Query 025418
Match_columns 253
No_of_seqs 188 out of 507
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11833 DUF3353: Protein of u 100.0 1.5E-58 3.2E-63 404.4 20.4 182 71-252 1-194 (194)
2 COG0484 DnaJ DnaJ-class molecu 99.4 2.5E-13 5.4E-18 129.4 6.4 53 59-111 1-61 (371)
3 KOG0713 Molecular chaperone (D 99.3 2.1E-12 4.6E-17 121.3 5.4 57 59-116 13-77 (336)
4 smart00271 DnaJ DnaJ molecular 99.2 9.2E-12 2E-16 87.7 5.2 48 62-109 1-57 (60)
5 PRK14296 chaperone protein Dna 99.2 9.5E-12 2.1E-16 118.3 6.4 52 59-110 1-59 (372)
6 PF00226 DnaJ: DnaJ domain; I 99.2 1.5E-11 3.2E-16 88.1 5.7 51 63-113 1-60 (64)
7 PRK14288 chaperone protein Dna 99.2 1.4E-11 3.1E-16 116.9 6.5 54 61-115 2-63 (369)
8 PTZ00037 DnaJ_C chaperone prot 99.2 1.4E-11 3E-16 119.3 6.3 60 55-115 21-84 (421)
9 PRK14299 chaperone protein Dna 99.2 2.6E-11 5.5E-16 111.7 6.5 53 59-111 1-60 (291)
10 PTZ00100 DnaJ chaperone protei 99.2 2E-11 4.3E-16 99.9 5.0 52 57-108 60-115 (116)
11 PRK14276 chaperone protein Dna 99.2 2.8E-11 6.1E-16 115.2 6.4 53 59-111 1-60 (380)
12 PRK09430 djlA Dna-J like membr 99.2 2.2E-11 4.8E-16 111.4 5.5 53 58-110 196-263 (267)
13 PRK14286 chaperone protein Dna 99.2 3E-11 6.5E-16 114.8 6.6 52 59-110 1-60 (372)
14 cd06257 DnaJ DnaJ domain or J- 99.2 2.4E-11 5.1E-16 84.0 4.3 46 63-108 1-54 (55)
15 PRK14282 chaperone protein Dna 99.2 2.8E-11 6.1E-16 114.7 6.4 56 59-115 1-65 (369)
16 PRK14287 chaperone protein Dna 99.2 3.3E-11 7.1E-16 114.5 6.4 56 59-115 1-63 (371)
17 PRK14279 chaperone protein Dna 99.2 3.9E-11 8.4E-16 114.9 6.3 56 59-115 6-69 (392)
18 PRK14283 chaperone protein Dna 99.2 4.6E-11 9.9E-16 113.7 6.3 56 59-115 2-64 (378)
19 PRK14280 chaperone protein Dna 99.1 5.7E-11 1.2E-15 113.0 6.5 52 59-110 1-59 (376)
20 PRK10767 chaperone protein Dna 99.1 7.1E-11 1.5E-15 111.9 6.6 53 59-111 1-61 (371)
21 PRK14295 chaperone protein Dna 99.1 6.4E-11 1.4E-15 113.3 6.1 51 60-110 7-65 (389)
22 KOG0721 Molecular chaperone (D 99.1 6.2E-11 1.3E-15 106.0 5.3 52 59-110 96-155 (230)
23 PRK14294 chaperone protein Dna 99.1 9.3E-11 2E-15 111.1 6.7 55 59-113 1-63 (366)
24 PRK14297 chaperone protein Dna 99.1 1.1E-10 2.3E-15 111.2 6.2 52 59-110 1-60 (380)
25 PRK14285 chaperone protein Dna 99.1 9.7E-11 2.1E-15 111.1 5.9 50 61-110 2-59 (365)
26 PRK14300 chaperone protein Dna 99.1 1.2E-10 2.6E-15 110.7 6.5 51 61-111 2-59 (372)
27 PRK14277 chaperone protein Dna 99.1 1.2E-10 2.6E-15 111.2 6.4 51 61-111 4-62 (386)
28 PRK14278 chaperone protein Dna 99.1 1.3E-10 2.8E-15 110.8 6.6 54 61-115 2-62 (378)
29 PRK14301 chaperone protein Dna 99.1 1.4E-10 3.1E-15 110.3 6.5 56 59-115 1-64 (373)
30 PRK14298 chaperone protein Dna 99.1 1.3E-10 2.9E-15 110.7 6.2 54 61-115 4-64 (377)
31 PRK10266 curved DNA-binding pr 99.1 1.6E-10 3.5E-15 107.0 6.6 51 59-109 1-58 (306)
32 PRK14291 chaperone protein Dna 99.1 2.3E-10 4.9E-15 109.1 6.4 50 61-110 2-58 (382)
33 PRK14281 chaperone protein Dna 99.0 2.7E-10 5.9E-15 109.2 6.6 54 61-115 2-63 (397)
34 PRK14289 chaperone protein Dna 99.0 2.7E-10 5.9E-15 108.6 6.4 52 59-110 2-61 (386)
35 KOG0715 Molecular chaperone (D 99.0 3E-10 6.5E-15 105.2 6.1 57 59-116 40-103 (288)
36 PRK14284 chaperone protein Dna 99.0 3.9E-10 8.4E-15 107.9 6.2 49 62-110 1-57 (391)
37 TIGR02349 DnaJ_bact chaperone 99.0 5.8E-10 1.3E-14 104.9 6.1 52 63-115 1-59 (354)
38 PRK14290 chaperone protein Dna 99.0 7.5E-10 1.6E-14 104.9 5.8 54 62-116 3-65 (365)
39 PRK14293 chaperone protein Dna 99.0 1.1E-09 2.3E-14 104.2 6.8 50 61-110 2-58 (374)
40 PRK14292 chaperone protein Dna 98.9 1E-09 2.2E-14 104.1 5.8 53 62-115 2-61 (371)
41 KOG0712 Molecular chaperone (D 98.9 1.3E-09 2.8E-14 103.1 6.3 50 60-109 2-56 (337)
42 PHA03102 Small T antigen; Revi 98.9 1.8E-09 3.8E-14 92.2 4.8 55 61-115 4-64 (153)
43 COG2214 CbpA DnaJ-class molecu 98.9 3.8E-09 8.3E-14 87.8 5.7 55 60-114 4-67 (237)
44 KOG0717 Molecular chaperone (D 98.7 8.8E-09 1.9E-13 100.5 4.7 54 60-113 6-68 (508)
45 KOG0719 Molecular chaperone (D 98.7 2.3E-08 4.9E-13 90.8 5.8 60 61-121 13-85 (264)
46 PTZ00341 Ring-infected erythro 98.6 5E-08 1.1E-12 102.4 6.4 56 60-115 571-633 (1136)
47 TIGR03835 termin_org_DnaJ term 98.6 6.1E-08 1.3E-12 99.7 6.1 51 62-112 2-59 (871)
48 KOG0716 Molecular chaperone (D 98.6 5E-08 1.1E-12 89.9 4.4 55 61-116 30-92 (279)
49 KOG0691 Molecular chaperone (D 98.6 7.3E-08 1.6E-12 90.0 5.2 55 61-115 4-66 (296)
50 PHA02624 large T antigen; Prov 98.5 9E-08 1.9E-12 96.8 4.6 58 59-116 8-71 (647)
51 COG5407 SEC63 Preprotein trans 98.4 2.1E-07 4.5E-12 91.3 4.4 55 60-114 96-163 (610)
52 KOG0718 Molecular chaperone (D 98.4 3.6E-07 7.8E-12 89.7 5.1 54 59-112 6-70 (546)
53 PRK05014 hscB co-chaperone Hsc 98.4 5.9E-07 1.3E-11 77.5 5.7 53 62-115 1-68 (171)
54 PRK00294 hscB co-chaperone Hsc 98.3 1.6E-06 3.6E-11 75.1 6.2 56 59-115 1-71 (173)
55 KOG0624 dsRNA-activated protei 98.3 8.1E-07 1.8E-11 85.3 4.4 58 61-119 393-463 (504)
56 PRK01356 hscB co-chaperone Hsc 98.2 2.1E-06 4.6E-11 73.9 5.8 53 62-115 2-67 (166)
57 PRK03578 hscB co-chaperone Hsc 98.1 4.7E-06 1E-10 72.4 6.3 53 62-115 6-73 (176)
58 KOG0720 Molecular chaperone (D 98.1 2.8E-06 6E-11 83.3 4.4 55 54-108 227-288 (490)
59 KOG0722 Molecular chaperone (D 98.0 3E-06 6.5E-11 78.3 1.8 48 61-108 32-86 (329)
60 KOG0714 Molecular chaperone (D 97.9 7.1E-06 1.5E-10 71.7 3.0 47 61-107 2-57 (306)
61 KOG0568 Molecular chaperone (D 97.8 3.5E-05 7.6E-10 70.7 5.8 52 63-114 48-106 (342)
62 KOG0550 Molecular chaperone (D 97.8 2E-05 4.2E-10 77.0 3.7 56 61-116 372-436 (486)
63 KOG0723 Molecular chaperone (D 97.6 8.3E-05 1.8E-09 60.5 4.0 54 56-109 50-107 (112)
64 KOG1789 Endocytosis protein RM 97.4 0.00023 4.9E-09 76.2 5.4 57 54-110 1273-1338(2235)
65 COG1076 DjlA DnaJ-domain-conta 97.3 0.00017 3.6E-09 62.1 3.0 46 62-107 113-173 (174)
66 KOG1150 Predicted molecular ch 97.3 0.00027 5.9E-09 63.6 4.2 56 61-116 52-116 (250)
67 PRK01773 hscB co-chaperone Hsc 97.1 0.001 2.2E-08 57.9 6.1 54 62-116 2-70 (173)
68 PF13446 RPT: A repeated domai 96.9 0.0015 3.3E-08 47.0 4.2 50 59-111 2-51 (62)
69 TIGR00714 hscB Fe-S protein as 96.6 0.0036 7.8E-08 53.4 5.0 41 74-115 3-56 (157)
70 PF03656 Pam16: Pam16; InterP 95.1 0.021 4.6E-07 47.6 3.4 57 58-115 54-114 (127)
71 COG5269 ZUO1 Ribosome-associat 94.5 0.041 8.9E-07 51.9 4.0 67 54-121 35-114 (379)
72 PF06570 DUF1129: Protein of u 92.8 5.9 0.00013 34.8 14.3 33 78-110 9-41 (206)
73 PRK07668 hypothetical protein; 82.6 41 0.00089 31.2 16.5 135 79-222 10-165 (254)
74 COG5552 Uncharacterized conser 77.2 6.4 0.00014 30.6 5.0 43 65-107 6-52 (88)
75 PLN00014 light-harvesting-like 74.4 10 0.00023 35.0 6.5 69 101-170 111-183 (250)
76 PF06738 DUF1212: Protein of u 69.8 69 0.0015 27.2 12.9 52 166-218 118-171 (193)
77 PF04341 DUF485: Protein of un 66.8 24 0.00053 27.3 6.3 62 190-251 10-72 (91)
78 PF10041 DUF2277: Uncharacteri 66.0 12 0.00025 29.1 4.2 25 68-92 9-33 (78)
79 PRK11427 multidrug efflux syst 63.1 52 0.0011 34.7 9.6 90 131-228 5-100 (683)
80 PRK11056 hypothetical protein; 60.7 62 0.0013 27.1 7.8 65 180-249 41-109 (120)
81 COG0109 CyoE Polyprenyltransfe 59.7 13 0.00028 35.5 4.2 62 176-247 125-188 (304)
82 PF11351 DUF3154: Protein of u 55.8 88 0.0019 25.6 8.0 56 83-141 3-62 (123)
83 PF05884 ZYG-11_interact: Inte 52.8 2.2E+02 0.0047 27.3 13.2 37 186-222 152-189 (299)
84 PF01988 VIT1: VIT family; In 51.6 1.7E+02 0.0037 25.7 12.3 23 194-216 190-212 (213)
85 KOG3442 Uncharacterized conser 50.5 29 0.00064 29.3 4.4 49 59-107 56-108 (132)
86 PF01102 Glycophorin_A: Glycop 49.9 25 0.00054 29.3 3.9 15 154-168 66-80 (122)
87 COG0141 HisD Histidinol dehydr 48.1 34 0.00073 34.2 5.1 37 74-118 61-97 (425)
88 PF07226 DUF1422: Protein of u 47.5 1E+02 0.0022 25.7 7.1 65 180-249 41-109 (117)
89 TIGR00069 hisD histidinol dehy 45.7 29 0.00063 34.3 4.3 38 74-119 33-70 (393)
90 cd06572 Histidinol_dh Histidin 45.5 28 0.00061 34.3 4.2 39 73-119 36-74 (390)
91 PTZ00352 60S ribosomal protein 45.2 34 0.00073 31.2 4.3 66 54-120 122-201 (212)
92 PF08006 DUF1700: Protein of u 44.3 1.7E+02 0.0037 24.9 8.4 7 104-110 29-35 (181)
93 PF00815 Histidinol_dh: Histid 44.1 31 0.00067 34.3 4.2 38 73-118 49-86 (412)
94 PF03729 DUF308: Short repeat 43.7 73 0.0016 22.1 5.1 59 156-214 3-70 (72)
95 TIGR01337 apcB allophycocyanin 43.3 33 0.00073 29.8 3.9 48 61-108 112-159 (167)
96 PRK00877 hisD bifunctional his 43.3 33 0.00071 34.2 4.2 39 73-119 64-102 (425)
97 PRK13770 histidinol dehydrogen 42.6 35 0.00075 34.0 4.3 37 74-118 57-93 (416)
98 PRK05771 V-type ATP synthase s 42.1 3E+02 0.0064 28.3 11.1 81 137-222 329-418 (646)
99 PRK12447 histidinol dehydrogen 41.4 38 0.00081 33.8 4.3 38 73-118 57-94 (426)
100 TIGR02230 ATPase_gene1 F0F1-AT 39.2 99 0.0021 24.9 5.7 30 185-217 61-90 (100)
101 PRK10692 hypothetical protein; 37.6 82 0.0018 25.1 4.9 48 201-249 12-60 (92)
102 PF10762 DUF2583: Protein of u 37.5 86 0.0019 24.9 4.9 48 201-249 12-60 (89)
103 PF07281 INSIG: Insulin-induce 37.5 2.7E+02 0.0058 24.8 8.7 56 146-203 78-137 (193)
104 PF07331 TctB: Tripartite tric 36.7 2.2E+02 0.0047 22.7 8.2 57 150-209 70-126 (141)
105 CHL00089 apcF allophycocyanin 35.6 50 0.0011 28.9 3.8 47 62-108 114-161 (169)
106 PF04932 Wzy_C: O-Antigen liga 34.9 1.2E+02 0.0025 24.2 5.7 32 163-194 6-37 (163)
107 KOG0431 Auxilin-like protein a 34.1 39 0.00084 33.8 3.2 31 65-95 391-421 (453)
108 PF04246 RseC_MucC: Positive r 33.3 2.5E+02 0.0054 22.7 7.4 22 197-218 96-117 (135)
109 cd03166 CD63_LEL Tetraspanin, 33.2 97 0.0021 23.1 4.7 29 75-107 7-35 (99)
110 PRK11677 hypothetical protein; 32.9 36 0.00078 28.7 2.4 20 202-221 4-23 (134)
111 cd02435 CCC1 CCC1. CCC1: This 32.6 3.9E+02 0.0084 24.4 12.1 17 89-105 94-110 (241)
112 COG4858 Uncharacterized membra 32.5 3.9E+02 0.0085 24.4 15.1 33 79-111 24-56 (226)
113 PLN02776 prenyltransferase 32.4 1.4E+02 0.0031 28.8 6.6 17 232-249 150-166 (341)
114 PF06781 UPF0233: Uncharacteri 32.1 97 0.0021 24.4 4.5 17 198-214 66-82 (87)
115 PF11368 DUF3169: Protein of u 31.8 1.1E+02 0.0024 27.5 5.5 27 193-219 4-30 (248)
116 KOG3767 Sideroflexin [General 31.5 40 0.00086 32.5 2.7 32 63-94 55-86 (328)
117 COG3167 PilO Tfp pilus assembl 30.9 86 0.0019 28.5 4.5 35 74-108 56-93 (211)
118 COG3763 Uncharacterized protei 30.7 61 0.0013 24.8 3.0 24 196-219 2-25 (71)
119 COG0597 LspA Lipoprotein signa 30.7 82 0.0018 27.4 4.3 20 175-194 73-92 (167)
120 PF11460 DUF3007: Protein of u 30.5 31 0.00066 28.2 1.5 52 198-253 4-56 (104)
121 PF05437 AzlD: Branched-chain 30.2 2.5E+02 0.0054 21.4 8.0 63 133-208 28-95 (99)
122 PF07709 SRR: Seven Residue Re 30.1 34 0.00074 17.9 1.2 12 96-107 2-13 (14)
123 PRK00523 hypothetical protein; 29.8 65 0.0014 24.7 3.1 23 197-219 4-26 (72)
124 COG1289 Predicted membrane pro 29.6 5.4E+02 0.012 26.6 10.7 14 208-221 410-423 (674)
125 PF13311 DUF4080: Protein of u 29.0 68 0.0015 28.0 3.5 32 60-92 9-42 (190)
126 COG2962 RarD Predicted permeas 29.0 2.1E+02 0.0046 27.3 7.0 45 154-198 129-173 (293)
127 PF14490 HHH_4: Helix-hairpin- 28.9 76 0.0016 24.4 3.4 46 61-110 41-86 (94)
128 PRK01844 hypothetical protein; 28.8 69 0.0015 24.5 3.1 23 197-219 3-25 (72)
129 PF09925 DUF2157: Predicted me 28.6 2.8E+02 0.0061 22.7 7.1 65 150-215 34-107 (145)
130 PF07784 DUF1622: Protein of u 27.8 2.6E+02 0.0057 21.3 6.2 29 192-220 23-51 (77)
131 PRK00907 hypothetical protein; 27.6 1E+02 0.0023 24.3 4.0 42 63-108 18-83 (92)
132 PF06181 DUF989: Protein of un 27.5 1.8E+02 0.0038 27.9 6.2 25 196-220 118-142 (300)
133 smart00150 SPEC Spectrin repea 27.4 1.9E+02 0.0041 20.5 5.3 16 92-107 49-64 (101)
134 KOG4452 Predicted membrane pro 26.2 72 0.0016 24.5 2.7 15 234-248 53-67 (79)
135 TIGR01191 ccmC heme exporter p 26.1 3.3E+02 0.0072 23.9 7.3 59 181-241 29-91 (184)
136 PRK07027 cobalamin biosynthesi 25.8 78 0.0017 25.9 3.2 31 68-98 8-38 (126)
137 PF12725 DUF3810: Protein of u 25.7 1.8E+02 0.0038 27.6 5.9 46 62-107 82-146 (318)
138 PRK11412 putative uracil/xanth 25.5 5E+02 0.011 25.8 9.2 41 176-217 172-212 (433)
139 PF06295 DUF1043: Protein of u 24.9 44 0.00095 27.5 1.5 18 204-221 2-19 (128)
140 PF13720 Acetyltransf_11: Udp 24.5 52 0.0011 25.1 1.8 18 91-108 27-44 (83)
141 cd03158 penumbra_like_LEL Tetr 24.2 1.5E+02 0.0033 23.1 4.5 30 74-107 6-35 (119)
142 TIGR03759 conj_TIGR03759 integ 24.1 1.3E+02 0.0027 27.3 4.4 44 62-107 37-81 (200)
143 PF06210 DUF1003: Protein of u 24.0 2E+02 0.0043 23.3 5.1 22 199-220 4-25 (108)
144 cd03151 CD81_like_LEL Tetraspa 24.0 85 0.0018 23.3 2.8 33 73-107 5-37 (84)
145 PF08876 DUF1836: Domain of un 23.5 67 0.0014 25.9 2.3 33 71-106 72-104 (105)
146 cd03152 CD9_LEL Tetraspanin, e 23.4 1E+02 0.0022 22.6 3.2 32 73-107 5-37 (84)
147 cd03159 TM4SF9_like_LEL Tetras 23.2 1.5E+02 0.0033 23.2 4.3 29 75-107 7-35 (121)
148 cd03154 TM4SF3_like_LEL Tetras 23.2 1.6E+02 0.0034 22.0 4.3 29 76-107 12-40 (100)
149 COG0670 Integral membrane prot 22.8 5.2E+02 0.011 23.5 8.2 38 181-218 129-166 (233)
150 PRK10582 cytochrome o ubiquino 22.6 4.2E+02 0.0092 21.5 7.2 33 186-218 62-96 (109)
151 COG1076 DjlA DnaJ-domain-conta 22.4 1.2E+02 0.0026 26.0 3.8 37 77-113 18-67 (174)
152 COG1289 Predicted membrane pro 22.4 7E+02 0.015 25.8 10.0 61 160-220 21-81 (674)
153 PF13105 DUF3959: Protein of u 22.3 1.7E+02 0.0037 26.6 4.8 29 194-222 122-150 (239)
154 cd03163 TM4SF8_like_LEL Tetras 21.8 1.7E+02 0.0036 22.1 4.2 28 76-107 9-36 (105)
155 PF09527 ATPase_gene1: Putativ 21.8 2.2E+02 0.0047 19.6 4.4 16 200-215 31-46 (55)
156 COG2921 Uncharacterized conser 21.7 1.2E+02 0.0026 24.2 3.3 41 63-107 16-80 (90)
157 PF14159 CAAD: CAAD domains of 21.6 2.5E+02 0.0055 21.9 5.2 57 191-252 12-68 (90)
158 cd03165 NET-5_like_LEL Tetrasp 21.4 1.8E+02 0.004 21.4 4.3 31 75-107 7-37 (98)
159 PF14235 DUF4337: Domain of un 21.3 2.3E+02 0.005 24.3 5.3 35 176-211 119-153 (157)
160 PF11947 DUF3464: Protein of u 21.2 3.2E+02 0.007 23.6 6.1 32 149-193 58-89 (153)
161 PRK14788 lipoprotein signal pe 21.0 1.5E+02 0.0032 26.5 4.2 11 211-221 95-105 (200)
162 PF06305 DUF1049: Protein of u 21.0 96 0.0021 21.9 2.5 18 201-218 21-38 (68)
163 TIGR03144 cytochr_II_ccsB cyto 20.9 6.1E+02 0.013 22.7 9.8 42 198-241 152-193 (243)
164 PF13042 DUF3902: Protein of u 20.9 5.7E+02 0.012 22.4 7.8 67 150-217 5-86 (161)
165 PF11833 DUF3353: Protein of u 20.9 5.9E+02 0.013 22.5 12.9 59 183-243 128-188 (194)
166 TIGR03580 EF_0832 conserved hy 20.8 1.1E+02 0.0023 27.8 3.2 59 195-253 146-205 (233)
167 PF05225 HTH_psq: helix-turn-h 20.4 2.3E+02 0.0049 19.1 4.1 41 75-120 1-41 (45)
168 cd03156 uroplakin_I_like_LEL T 20.3 1.5E+02 0.0033 22.3 3.7 29 76-107 10-38 (114)
169 COG3413 Predicted DNA binding 20.2 49 0.0011 29.0 1.0 55 36-93 159-213 (215)
170 PF02868 Peptidase_M4_C: Therm 20.1 1.8E+02 0.0039 24.9 4.4 39 69-107 123-162 (164)
No 1
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=100.00 E-value=1.5e-58 Score=404.44 Aligned_cols=182 Identities=41% Similarity=0.722 Sum_probs=175.4
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhcccchhhhhhhc------------ccCCChhhh
Q 025418 71 SPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKKQ------------VEESPPWFK 138 (253)
Q Consensus 71 s~~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki~v~~~ir~~------------~~~~p~W~~ 138 (253)
||||||||||+|||++.+||++|++++++||+|||+|+|+||++||+|||++++++|++ .++.|+|+|
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~~~~~~IEaAYD~ILM~rL~~Rq~Gki~v~~~ir~ad~~~~~~~~~~~~~~~p~wl~ 80 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDEKSREAIEAAYDAILMERLRQRQKGKIKVPERIRYADREEPKPPNPKPSNPSPPWLQ 80 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHhhhccccccCCCCCCccchHHH
Confidence 69999999999999999999999999999999999999999999999999999999942 246799999
Q ss_pred hhhccccCCChhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 025418 139 NLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 218 (253)
Q Consensus 139 ~ll~r~~~Ps~~~l~~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~l 218 (253)
++.++|++|++++|.+++++|++|++|+++++++++|+||||+|+++||||||||++++|||+++++|+|++||++|+++
T Consensus 81 ~~~~~~~~P~~~~l~~~~~~f~~L~~~~~~~~~~~~~~l~Lal~~~~~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l 160 (194)
T PF11833_consen 81 RLLPSFDTPSSQDLLIRAAAFGALGLWSLLFPAASGPGLQLALGLGACIYFLNRKERKLGRAFLWTLGGLVVGLILGSLL 160 (194)
T ss_pred hcccceeCCCcchHHHHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcccHHHHHHHHHHHHHHHhhhcC
Q 025418 219 VPMIPTVLIHPTWTLELLTSLVAYFFLFLACTFF 252 (253)
Q Consensus 219 ~~~i~~~~l~~~~s~e~i~sl~t~vlLwl~ssfL 252 (253)
++.+++.++++++|+|+++|+++|++||++|+||
T Consensus 161 ~~~l~~~~~p~~~s~~~~~sl~~~i~lwl~s~fL 194 (194)
T PF11833_consen 161 ASWLPVDIVPGPWSPEQLVSLFTYILLWLVSLFL 194 (194)
T ss_pred HhhcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999988888899999999999999999999997
No 2
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=2.5e-13 Score=129.44 Aligned_cols=53 Identities=32% Similarity=0.343 Sum_probs=47.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~ 111 (253)
|...|.|++|||+++||.||||+|||+|+.|||||. +++++|++|||.|...+
T Consensus 1 ~~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~e 61 (371)
T COG0484 1 MAKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61 (371)
T ss_pred CCccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHH
Confidence 567899999999999999999999999999999983 57899999999984433
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=2.1e-12 Score=121.29 Aligned_cols=57 Identities=28% Similarity=0.347 Sum_probs=50.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
...+|||++|||+++||+.|||+|||+|+.+||||+ +.+.+|++||+.+ .|.-++|+
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVL-sDpekRk~ 77 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVL-SDPEKRKH 77 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHh-cCHHHHHH
Confidence 357899999999999999999999999999999995 3799999999998 66666665
No 4
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.25 E-value=9.2e-12 Score=87.66 Aligned_cols=48 Identities=29% Similarity=0.273 Sum_probs=43.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHh
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLM 109 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm 109 (253)
.|||++|||+++++.+||++||+++.++||||. +.+.+|++||+.|..
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSD 57 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcC
Confidence 489999999999999999999999999999996 357799999999843
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.24 E-value=9.5e-12 Score=118.33 Aligned_cols=52 Identities=35% Similarity=0.329 Sum_probs=47.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~ 110 (253)
|...|+|++|||+++||.+|||+|||+|+.+||||. +++++|++|||.|...
T Consensus 1 m~~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~ 59 (372)
T PRK14296 1 MKKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDK 59 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCH
Confidence 556899999999999999999999999999999994 4788999999998544
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.24 E-value=1.5e-11 Score=88.13 Aligned_cols=51 Identities=35% Similarity=0.456 Sum_probs=45.1
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHh
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFR 113 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~ 113 (253)
|||++|||+++++.+||+++|++++++||||. +.++.|++||+.|....-|
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R 60 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERR 60 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHH
Confidence 69999999999999999999999999999985 4677999999999554443
No 7
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.22 E-value=1.4e-11 Score=116.91 Aligned_cols=54 Identities=20% Similarity=0.182 Sum_probs=47.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
..|+|++|||+++||.+|||+|||+|+.+||||. +++++|++|||.| .+..+++
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevL-sd~~kR~ 63 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVL-SDEKKRA 63 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHh-ccHHHHH
Confidence 4799999999999999999999999999999994 4688999999987 4444444
No 8
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.22 E-value=1.4e-11 Score=119.31 Aligned_cols=60 Identities=18% Similarity=0.141 Sum_probs=51.3
Q ss_pred CCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHHhhh
Q 025418 55 TFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 55 ~fp~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~Ilm~~l~~R 115 (253)
...+|...|+|++|||+++||.+|||+|||+|+.+||||+ +++++|++|||.|. +..+++
T Consensus 21 ~~~~~~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLs-D~~kR~ 84 (421)
T PTZ00037 21 RKREVDNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLS-DPEKRK 84 (421)
T ss_pred ccccccchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhc-cHHHHH
Confidence 4455778899999999999999999999999999999985 68999999999884 444333
No 9
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.19 E-value=2.6e-11 Score=111.69 Aligned_cols=53 Identities=25% Similarity=0.256 Sum_probs=47.2
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~ 111 (253)
|...|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.+....
T Consensus 1 m~~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 60 (291)
T PRK14299 1 MAYKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPE 60 (291)
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHH
Confidence 456899999999999999999999999999999994 46889999999985543
No 10
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.19 E-value=2e-11 Score=99.88 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=47.6
Q ss_pred CCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHH
Q 025418 57 SRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLL 108 (253)
Q Consensus 57 p~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~Il 108 (253)
..|+.+|+|++|||+++||.|||+++|++|+.+||||. +.+++|++|||.|+
T Consensus 60 ~~Ms~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 60 NPMSKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 35778999999999999999999999999999999994 47889999999985
No 11
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=2.8e-11 Score=115.23 Aligned_cols=53 Identities=26% Similarity=0.339 Sum_probs=47.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~ 111 (253)
|..+|+|++|||+++||.+||++|||+|+++||||. +++++|++|||.|....
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~ 60 (380)
T PRK14276 1 MNNTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQ 60 (380)
T ss_pred CCCCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHh
Confidence 456899999999999999999999999999999993 57889999999985544
No 12
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.18 E-value=2.2e-11 Score=111.40 Aligned_cols=53 Identities=25% Similarity=0.319 Sum_probs=48.0
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------------hhHHHHHHHHHHHHhH
Q 025418 58 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 58 ~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------------~~~~~IeaAYD~Ilm~ 110 (253)
.++.+|+|++|||+++||.+|||+|||+|+++||||+ +++.+|++|||.|..+
T Consensus 196 ~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~~ 263 (267)
T PRK09430 196 GPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKKQ 263 (267)
T ss_pred CCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4677999999999999999999999999999999996 3678999999999543
No 13
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=3e-11 Score=114.85 Aligned_cols=52 Identities=25% Similarity=0.260 Sum_probs=46.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
|...|+|++|||+++||.+||++|||+|+++||||. +++++|++|||.|...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (372)
T PRK14286 1 MSERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDP 60 (372)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccH
Confidence 456899999999999999999999999999999995 4688999999987443
No 14
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.18 E-value=2.4e-11 Score=84.00 Aligned_cols=46 Identities=35% Similarity=0.434 Sum_probs=42.2
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCChh--------hHHHHHHHHHHHH
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHER--------SEESIEAAFEKLL 108 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~--------~~~~IeaAYD~Il 108 (253)
|||++|||+++++.+||+++|++|.++||||.. .+.+|++||+.|.
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~ 54 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLS 54 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhc
Confidence 799999999999999999999999999999964 4679999999873
No 15
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.18 E-value=2.8e-11 Score=114.75 Aligned_cols=56 Identities=27% Similarity=0.341 Sum_probs=47.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
|...|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|. +..+++
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~-d~~kR~ 65 (369)
T PRK14282 1 REKKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLS-DPQKRA 65 (369)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhc-ChhhHH
Confidence 456899999999999999999999999999999985 36779999999874 444333
No 16
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.17 E-value=3.3e-11 Score=114.54 Aligned_cols=56 Identities=20% Similarity=0.294 Sum_probs=48.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
|...|+|++|||+++||.+|||+||++|+.+||||. +++++|++|||.|. +..+++
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~-d~~kR~ 63 (371)
T PRK14287 1 MSKRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLS-DPQKKA 63 (371)
T ss_pred CCCCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhC-cHhHHH
Confidence 456799999999999999999999999999999994 46889999999884 444443
No 17
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.16 E-value=3.9e-11 Score=114.89 Aligned_cols=56 Identities=27% Similarity=0.258 Sum_probs=47.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
+...|+|++|||+++||.+|||+|||+|+.+||||. +++++|++|||.|. |..+++
T Consensus 6 ~~~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLs-D~~KR~ 69 (392)
T PRK14279 6 WVEKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLS-DPAKRK 69 (392)
T ss_pred hcccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhc-chhhhh
Confidence 346899999999999999999999999999999984 46779999999984 444433
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.15 E-value=4.6e-11 Score=113.66 Aligned_cols=56 Identities=23% Similarity=0.284 Sum_probs=48.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
|.+.|+|++|||+++||.+||++||++|+.+||||. +++.+|++|||.| .+..+++
T Consensus 2 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~L-sd~~kR~ 64 (378)
T PRK14283 2 AEKRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVL-SDDEKRQ 64 (378)
T ss_pred CCcCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHh-chhHHHH
Confidence 457899999999999999999999999999999995 4788999999987 4554444
No 19
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.14 E-value=5.7e-11 Score=113.00 Aligned_cols=52 Identities=29% Similarity=0.305 Sum_probs=46.6
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~ 110 (253)
|...|+|++|||+++||.+|||+||++|+++||||. +++++|++|||.|...
T Consensus 1 ~~~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (376)
T PRK14280 1 MAKRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDD 59 (376)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccH
Confidence 445799999999999999999999999999999994 5788999999998543
No 20
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=7.1e-11 Score=111.92 Aligned_cols=53 Identities=30% Similarity=0.329 Sum_probs=46.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~ 111 (253)
|+..|+|++|||+++||.+|||+||++|+.+||||. +++++|++|||.|....
T Consensus 1 ~~~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~ 61 (371)
T PRK10767 1 MAKRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQ 61 (371)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchh
Confidence 456899999999999999999999999999999995 36779999999885443
No 21
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.13 E-value=6.4e-11 Score=113.27 Aligned_cols=51 Identities=27% Similarity=0.270 Sum_probs=46.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
...|+|++|||+++||.+||++|||+|+.+||||. +++++|++|||.|...
T Consensus 7 ~~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 65 (389)
T PRK14295 7 IEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDE 65 (389)
T ss_pred cccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCch
Confidence 36899999999999999999999999999999994 4788999999998543
No 22
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=6.2e-11 Score=106.05 Aligned_cols=52 Identities=33% Similarity=0.418 Sum_probs=47.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
+...||||+||++++||+.|||+|||+|..+||||+ +.+++|++||.++..+
T Consensus 96 ~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~ 155 (230)
T KOG0721|consen 96 RQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDK 155 (230)
T ss_pred hhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcch
Confidence 567899999999999999999999999999999997 3678999999998544
No 23
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.12 E-value=9.3e-11 Score=111.13 Aligned_cols=55 Identities=31% Similarity=0.264 Sum_probs=47.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFR 113 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~ 113 (253)
|...|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|.....|
T Consensus 1 ~~~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r 63 (366)
T PRK14294 1 MVKRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63 (366)
T ss_pred CCCCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHH
Confidence 556899999999999999999999999999999985 4678999999998554433
No 24
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.1e-10 Score=111.24 Aligned_cols=52 Identities=25% Similarity=0.268 Sum_probs=46.1
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
|...|+|++|||+++||.+||++|||+|+++||||. +++++|++|||.|...
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 60 (380)
T PRK14297 1 MASKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDP 60 (380)
T ss_pred CCCCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCH
Confidence 345799999999999999999999999999999994 3678999999988544
No 25
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=9.7e-11 Score=111.13 Aligned_cols=50 Identities=26% Similarity=0.264 Sum_probs=45.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
..|+|++|||+++||.+|||+|||+|+++||||. +++.+|++|||.|..+
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 59 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDD 59 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 4799999999999999999999999999999995 3588999999988543
No 26
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.2e-10 Score=110.66 Aligned_cols=51 Identities=27% Similarity=0.305 Sum_probs=45.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~ 111 (253)
.+|+|++|||+++||.+||++||++|+++||||. +++++|++|||.|..+.
T Consensus 2 ~~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~ 59 (372)
T PRK14300 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQ 59 (372)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHh
Confidence 3799999999999999999999999999999993 47889999999985443
No 27
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.2e-10 Score=111.17 Aligned_cols=51 Identities=29% Similarity=0.306 Sum_probs=45.6
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTS 111 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~ 111 (253)
..|+|++|||+++||.+||++|||+|+++||||. +++++|++|||.|....
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~ 62 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQ 62 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHH
Confidence 4799999999999999999999999999999994 36889999999985443
No 28
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.10 E-value=1.3e-10 Score=110.78 Aligned_cols=54 Identities=30% Similarity=0.306 Sum_probs=46.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
..|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.| .+..+++
T Consensus 2 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL-~d~~~r~ 62 (378)
T PRK14278 2 ARDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVL-SDPEKRR 62 (378)
T ss_pred CCCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHh-chhhhhh
Confidence 3799999999999999999999999999999994 3678999999987 4444444
No 29
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.09 E-value=1.4e-10 Score=110.26 Aligned_cols=56 Identities=30% Similarity=0.319 Sum_probs=47.8
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
|+..|+|++|||+++||.+||++|||+|+.+||||. +++++|++|||.|. +..+++
T Consensus 1 ~~~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~-d~~kr~ 64 (373)
T PRK14301 1 MSQRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLR-DAEKRA 64 (373)
T ss_pred CCCCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhc-chhhhh
Confidence 346899999999999999999999999999999995 36889999999984 444333
No 30
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.08 E-value=1.3e-10 Score=110.68 Aligned_cols=54 Identities=28% Similarity=0.297 Sum_probs=47.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
..|+|++|||+++||.+|||+||++|+++||||. +++++|++|||.| .+..+++
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL-~d~~kR~ 64 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVL-SDAEKRA 64 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHh-cchHhhh
Confidence 4799999999999999999999999999999995 4688999999987 4544444
No 31
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.08 E-value=1.6e-10 Score=106.97 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLM 109 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm 109 (253)
|+..|||++|||+++||.+|||+||++|+.+||||. +++++|++|||.+..
T Consensus 1 ~~~~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~ 58 (306)
T PRK10266 1 MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSD 58 (306)
T ss_pred CCcCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhh
Confidence 445899999999999999999999999999999993 368899999999843
No 32
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.06 E-value=2.3e-10 Score=109.15 Aligned_cols=50 Identities=28% Similarity=0.280 Sum_probs=45.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~ 110 (253)
.+|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|...
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~ 58 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDP 58 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCH
Confidence 4799999999999999999999999999999993 4788999999988443
No 33
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.05 E-value=2.7e-10 Score=109.18 Aligned_cols=54 Identities=28% Similarity=0.342 Sum_probs=46.7
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
..|+|++|||+++||.+|||+||++|+++||||. +++++|++|||.|. +..+++
T Consensus 2 ~~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~-d~~~r~ 63 (397)
T PRK14281 2 KRDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLS-NDDKRR 63 (397)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhh-hhhhhh
Confidence 4799999999999999999999999999999994 46789999999984 444433
No 34
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.04 E-value=2.7e-10 Score=108.55 Aligned_cols=52 Identities=23% Similarity=0.207 Sum_probs=46.9
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
|...|+|++|||+++||.|||++||++|+++||||. +++++|++|||.+..+
T Consensus 2 ~~~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~ 61 (386)
T PRK14289 2 AEKRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDP 61 (386)
T ss_pred CccCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCH
Confidence 346899999999999999999999999999999995 4688999999998655
No 35
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3e-10 Score=105.18 Aligned_cols=57 Identities=30% Similarity=0.325 Sum_probs=49.5
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhhh
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
+..+|||++|||+++|+..|||+||++|+++||||. +++.+|.+|||.| ++..++++
T Consensus 40 ~~~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiL-sd~eKR~~ 103 (288)
T KOG0715|consen 40 ISKEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEIL-SDEEKRQE 103 (288)
T ss_pred CCCcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHh-cCHHHHHH
Confidence 445599999999999999999999999999999994 4789999999998 55555554
No 36
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.01 E-value=3.9e-10 Score=107.85 Aligned_cols=49 Identities=31% Similarity=0.332 Sum_probs=44.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhH
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~ 110 (253)
.|+|++|||+++||.+|||+|||+|+++||||. +++++|++|||.|...
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~ 57 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDA 57 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCH
Confidence 489999999999999999999999999999994 3688999999999644
No 37
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=98.99 E-value=5.8e-10 Score=104.89 Aligned_cols=52 Identities=35% Similarity=0.400 Sum_probs=45.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
|+|++|||+++||.+|||+||++|+++||||. +++++|++|||.| .+..+++
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL-~d~~~R~ 59 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVL-SDPEKRA 59 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHh-hChHHHH
Confidence 78999999999999999999999999999995 3688999999987 4544443
No 38
>PRK14290 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=7.5e-10 Score=104.92 Aligned_cols=54 Identities=30% Similarity=0.346 Sum_probs=46.7
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHhhhh
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
.|+|++|||+++||.+||++|||+|+.+||||. +++++|++|||.| .+..+++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L-~d~~~r~~ 65 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVL-SDPQKRRQ 65 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHh-cChhhhhh
Confidence 699999999999999999999999999999984 3567999999998 45554443
No 39
>PRK14293 chaperone protein DnaJ; Provisional
Probab=98.96 E-value=1.1e-09 Score=104.18 Aligned_cols=50 Identities=26% Similarity=0.274 Sum_probs=45.2
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMT 110 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~ 110 (253)
..|+|++|||+++||.+||++||++|+++||||. +++++|++|||.|..+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~ 58 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDP 58 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhch
Confidence 3699999999999999999999999999999994 5788999999988544
No 40
>PRK14292 chaperone protein DnaJ; Provisional
Probab=98.94 E-value=1e-09 Score=104.08 Aligned_cols=53 Identities=28% Similarity=0.322 Sum_probs=46.2
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
.|+|++|||+++||.+||++||++|+++||||. +++++|++|||.| .+..+++
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL-~d~~~r~ 61 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVL-SDAEKRA 61 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHh-cchhhhh
Confidence 589999999999999999999999999999994 4678999999998 4444444
No 41
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.3e-09 Score=103.09 Aligned_cols=50 Identities=36% Similarity=0.353 Sum_probs=46.0
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHHHh
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLM 109 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-----~~~~~IeaAYD~Ilm 109 (253)
..+.-|.+|||+++||.+|||+|||+|+.+||||+ +++.+|.+|||.+..
T Consensus 2 ~~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd 56 (337)
T KOG0712|consen 2 KNTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSD 56 (337)
T ss_pred cccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcC
Confidence 35678999999999999999999999999999995 589999999999854
No 42
>PHA03102 Small T antigen; Reviewed
Probab=98.89 E-value=1.8e-09 Score=92.17 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~A--S~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~Ilm~~l~~R 115 (253)
.+..|++|||+++| |.+|||+||++++.+||||+ +++++|++||+.|.....+.+
T Consensus 4 ~~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~ 64 (153)
T PHA03102 4 SKELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLR 64 (153)
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcc
Confidence 45689999999999 99999999999999999985 589999999999955444444
No 43
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.85 E-value=3.8e-09 Score=87.80 Aligned_cols=55 Identities=31% Similarity=0.335 Sum_probs=47.9
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHhh
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRR 114 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~~ 114 (253)
...|+|++|||+++|+.+||++||++++.+||||. +++.+|++||+.+.....++
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~ 67 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRA 67 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHH
Confidence 46799999999999999999999999999999983 57889999999985554444
No 44
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=8.8e-09 Score=100.54 Aligned_cols=54 Identities=30% Similarity=0.269 Sum_probs=48.2
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHh
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFR 113 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~ 113 (253)
...+.|++|||.++|+.+||+++||+|+.|||||+ +++..|++|||+|-..+-|
T Consensus 6 ~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR 68 (508)
T KOG0717|consen 6 KKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQER 68 (508)
T ss_pred hhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhh
Confidence 35789999999999999999999999999999996 4799999999999655544
No 45
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.3e-08 Score=90.81 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=51.0
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhHHHhhh---hhcccc
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRR---KKEKIN 121 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~----------~~~~IeaAYD~Ilm~~l~~R---~~Gki~ 121 (253)
..|||++|||.++|++.||++||++|..+||||.. ++.+++.||..+ .|.-+++ +.|.|+
T Consensus 13 ~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iL-sDeekR~~YDetG~id 85 (264)
T KOG0719|consen 13 KKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQIL-SDEEKRAVYDETGSID 85 (264)
T ss_pred ccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHh-hHHHHHHHHhccCCCC
Confidence 45999999999999999999999999999999954 688999999988 4444444 478875
No 46
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=98.62 E-value=5e-08 Score=102.39 Aligned_cols=56 Identities=21% Similarity=0.108 Sum_probs=48.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhhh
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
...|+|++|||+++||.+|||+||++|+.+||||+ .++.+|..||+.+.....|++
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~ 633 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKM 633 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHH
Confidence 35799999999999999999999999999999995 478899999999865555443
No 47
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=98.59 E-value=6.1e-08 Score=99.70 Aligned_cols=51 Identities=27% Similarity=0.216 Sum_probs=45.5
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHH
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSF 112 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l 112 (253)
+|+|++|||+++|+.+|||+||++|+++||||. +++.+|+.||+.|.....
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~K 59 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKK 59 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHH
Confidence 699999999999999999999999999999996 357899999999854443
No 48
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5e-08 Score=89.89 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=48.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
..|-|.+||+.++|+.||||+|||+|+++||||. +++.+||.||..+ .++-++.-
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~IL-sD~~kR~~ 92 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAIL-SDPTKRNV 92 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHh-cChhhhhh
Confidence 5789999999999999999999999999999873 4899999999987 66666553
No 49
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.3e-08 Score=89.99 Aligned_cols=55 Identities=27% Similarity=0.216 Sum_probs=50.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh--------hhHHHHHHHHHHHHhHHHhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE--------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~--------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
+.|+|.+|||+++|+..||++||+.+..+||||+ ++|.++..||+.+....+|.+
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~ 66 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAA 66 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5799999999999999999999999999999985 378899999999988877776
No 50
>PHA02624 large T antigen; Provisional
Probab=98.50 E-value=9e-08 Score=96.84 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=49.9
Q ss_pred CCCCCcccccCCCCCC--CHHHHHHHHHHHHHHhCCC----hhhHHHHHHHHHHHHhHHHhhhh
Q 025418 59 IKVWDPYKRLGISPYA--SEEEIWGSRNFLLEQYTGH----ERSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~A--S~eEIk~A~~~L~~~y~~D----~~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
-+.++.|++|||+++| |.+|||+|||+++.+|||| ++++++|+.||+.+...--+.|.
T Consensus 8 ee~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 8 EESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 3567899999999999 9999999999999999988 46899999999999554444453
No 51
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=98.41 E-value=2.1e-07 Score=91.26 Aligned_cols=55 Identities=25% Similarity=0.355 Sum_probs=46.8
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHhh
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRR 114 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~~ 114 (253)
...||||+|||+.++|++|||++||+|.-+||||+. +-.+|++||..+..+.-|+
T Consensus 96 ~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~re 163 (610)
T COG5407 96 RGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRE 163 (610)
T ss_pred cCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 468999999999999999999999999999999952 4558999999986554333
No 52
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=3.6e-07 Score=89.69 Aligned_cols=54 Identities=20% Similarity=0.206 Sum_probs=46.7
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhHHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSF 112 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-----------~~~~~IeaAYD~Ilm~~l 112 (253)
.++.|-|..|+|++|||.|||++|||++.+-||||+ +.+.+|..|||.+...+-
T Consensus 6 ~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~k 70 (546)
T KOG0718|consen 6 LDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQK 70 (546)
T ss_pred cchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHH
Confidence 345689999999999999999999999999999984 357799999999865543
No 53
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=98.37 E-value=5.9e-07 Score=77.50 Aligned_cols=53 Identities=15% Similarity=0.259 Sum_probs=43.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHhhh
Q 025418 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 62 ~dPY~~LGVs~~--AS~eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (253)
.|+|++|||++. ++.++|+++|+++.++||||.- ....||.||+.+ ++.++++
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L-~dp~~Ra 68 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTL-KHPLKRA 68 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHH-CChhHHH
Confidence 489999999996 7889999999999999999951 345799999998 4444444
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=98.27 E-value=1.6e-06 Score=75.15 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=46.9
Q ss_pred CCCCCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHhhh
Q 025418 59 IKVWDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~--AS~eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (253)
|...|+|++||+++. .+.++|+++|++|.++||||.- ....||.||+.+ .+.+++.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L-~~p~~Ra 71 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTL-KSPPRRA 71 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHh-CChhhhH
Confidence 567899999999999 5579999999999999999952 356999999998 4555444
No 55
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=8.1e-07 Score=85.34 Aligned_cols=58 Identities=29% Similarity=0.304 Sum_probs=50.1
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-----------hhHHHHHHHHHHHHhHHHhhhh--hcc
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-----------RSEESIEAAFEKLLMTSFRRRK--KEK 119 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-----------~~~~~IeaAYD~Ilm~~l~~R~--~Gk 119 (253)
-.|.|++|||.++||.-||-+|||++++++|||. +++..|-+|-+.+ .+..++|| .|+
T Consensus 393 kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVL-sd~EkRrqFDnGe 463 (504)
T KOG0624|consen 393 KRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVL-SDPEKRRQFDNGE 463 (504)
T ss_pred cchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhh-cCHHHHhhccCCC
Confidence 5799999999999999999999999999999982 3566899999987 77777887 554
No 56
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=98.22 E-value=2.1e-06 Score=73.85 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=44.6
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-----------hHHHHHHHHHHHHhHHHhhh
Q 025418 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-----------SEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 62 ~dPY~~LGVs~~--AS~eEIk~A~~~L~~~y~~D~~-----------~~~~IeaAYD~Ilm~~l~~R 115 (253)
.|+|++|||+++ ++.++|+++|+++..+||||.- ....||.||+.+ .+.+++.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L-~dp~~Ra 67 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTL-KDALKRA 67 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHh-CCHHHHH
Confidence 689999999997 8899999999999999999952 235999999987 5555444
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=98.14 E-value=4.7e-06 Score=72.43 Aligned_cols=53 Identities=13% Similarity=0.159 Sum_probs=43.8
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHhhh
Q 025418 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 62 ~dPY~~LGVs~~--AS~eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~~R 115 (253)
.|+|++|||++. ++.++|+++|++|.++||||.- ....||.||+.+ .+.+++.
T Consensus 6 ~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL-~~p~~Ra 73 (176)
T PRK03578 6 DDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTL-RDPLKRA 73 (176)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHh-CChhhHH
Confidence 799999999995 6789999999999999999941 136999999998 4444433
No 58
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=2.8e-06 Score=83.29 Aligned_cols=55 Identities=15% Similarity=0.197 Sum_probs=48.7
Q ss_pred CCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHH
Q 025418 54 PTFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLL 108 (253)
Q Consensus 54 ~~fp~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Il 108 (253)
..++..+..|||.+|||..|.|.|+||+.||+++.--|||+ +.++.+..|||.|.
T Consensus 227 rl~re~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig 288 (490)
T KOG0720|consen 227 RLSRELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIG 288 (490)
T ss_pred hhhhhhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhc
Confidence 34555668999999999999999999999999999999995 47889999999984
No 59
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=3e-06 Score=78.31 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=42.9
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLL 108 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Il 108 (253)
.+|=|++|||+++|+..||.+||++|.++||||. +.+..|-.||+.+-
T Consensus 32 ~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilk 86 (329)
T KOG0722|consen 32 AENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILK 86 (329)
T ss_pred chhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhccccccc
Confidence 5789999999999999999999999999999994 35778889998874
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=7.1e-06 Score=71.72 Aligned_cols=47 Identities=36% Similarity=0.362 Sum_probs=39.4
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------hHHHHHHHHHHH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------SEESIEAAFEKL 107 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~---------~~~~IeaAYD~I 107 (253)
..|.|++|||.++|+.+||++||++++.+||+|+. ++.+|.+|||.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~l 57 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVL 57 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhcccccc
Confidence 47999999999999999999999999999999962 234555678743
No 61
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=3.5e-05 Score=70.65 Aligned_cols=52 Identities=23% Similarity=0.319 Sum_probs=47.4
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh-------hhHHHHHHHHHHHHhHHHhh
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE-------RSEESIEAAFEKLLMTSFRR 114 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~-------~~~~~IeaAYD~Ilm~~l~~ 114 (253)
.-|.+|||.++|+.+||+.||-.|+++||||. +.+.+|++||.+++.+.+.+
T Consensus 48 e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~k 106 (342)
T KOG0568|consen 48 ECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAK 106 (342)
T ss_pred HHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999983 57889999999999987765
No 62
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2e-05 Score=77.02 Aligned_cols=56 Identities=29% Similarity=0.154 Sum_probs=48.3
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh---------hhHHHHHHHHHHHHhHHHhhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE---------RSEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~---------~~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
-.|-|++|||+++||.+||++||+++...||||. .++.+|-+||..+-..--+.|+
T Consensus 372 Rkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ 436 (486)
T KOG0550|consen 372 RKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRF 436 (486)
T ss_pred hhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhc
Confidence 4689999999999999999999999999999994 3678999999998655555555
No 63
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=8.3e-05 Score=60.48 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=48.9
Q ss_pred CCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHh
Q 025418 56 FSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLM 109 (253)
Q Consensus 56 fp~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~Ilm 109 (253)
=|+|+....-.+|||+|.++.+-||+|.||..-..|||. --..+||+|+|.+-.
T Consensus 50 ~~kMsr~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~ 107 (112)
T KOG0723|consen 50 EPKMSRREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG 107 (112)
T ss_pred ccccchHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence 367999999999999999999999999999999999995 467899999999843
No 64
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.00023 Score=76.19 Aligned_cols=57 Identities=16% Similarity=0.081 Sum_probs=48.4
Q ss_pred CCCCCCCCCCcccccCCCCC----CCHHHHHHHHHHHHHHhCCCh-----hhHHHHHHHHHHHHhH
Q 025418 54 PTFSRIKVWDPYKRLGISPY----ASEEEIWGSRNFLLEQYTGHE-----RSEESIEAAFEKLLMT 110 (253)
Q Consensus 54 ~~fp~~~~~dPY~~LGVs~~----AS~eEIk~A~~~L~~~y~~D~-----~~~~~IeaAYD~Ilm~ 110 (253)
..++.|++++.||+|.|+-+ ...+.|+++|++|+.+||||+ +.+++|++|||.+-.+
T Consensus 1273 kKP~~mS~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~~~ 1338 (2235)
T KOG1789|consen 1273 KKPATMSVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLSSE 1338 (2235)
T ss_pred cCCCccchHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 66788999999999998743 334789999999999999996 4899999999998433
No 65
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.30 E-value=0.00017 Score=62.14 Aligned_cols=46 Identities=24% Similarity=0.297 Sum_probs=42.1
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------------hHHHHHHHHHHH
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------------SEESIEAAFEKL 107 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~---------------~~~~IeaAYD~I 107 (253)
.|+|++||+.+.++.++|+++|+.++.++|+|.. +.++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999999999999999999999853 677999999876
No 66
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00027 Score=63.56 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChh---------hHHHHHHHHHHHHhHHHhhhh
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHER---------SEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~---------~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
.-|||++|.|.|+.+.|+|++-|++|.---|||+. +++.|..||..+..+..++|-
T Consensus 52 nLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~ 116 (250)
T KOG1150|consen 52 NLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRC 116 (250)
T ss_pred ccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 35899999999999999999999999999999853 677899999998888877775
No 67
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=97.13 E-value=0.001 Score=57.87 Aligned_cols=54 Identities=9% Similarity=0.086 Sum_probs=46.1
Q ss_pred CCcccccCCCCC--CCHHHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHhhhh
Q 025418 62 WDPYKRLGISPY--ASEEEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFRRRK 116 (253)
Q Consensus 62 ~dPY~~LGVs~~--AS~eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~~R~ 116 (253)
.|+|+++|+++. .+..++++.|++|.+++|||.- .-..||.||.++ .+.+++.+
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tL-kdPl~RA~ 70 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQIL-KDPILRAE 70 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHH-CChHHHHH
Confidence 689999999998 8999999999999999999941 346999999998 66665553
No 68
>PF13446 RPT: A repeated domain in UCH-protein
Probab=96.88 E-value=0.0015 Score=47.04 Aligned_cols=50 Identities=14% Similarity=0.253 Sum_probs=42.4
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTS 111 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~ 111 (253)
|+.++.|+.|||+++.++|+|..+|+.... .|+.......+|-..|-+.|
T Consensus 2 ~~~~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~---~~P~~~~~~r~AL~~Ia~~R 51 (62)
T PF13446_consen 2 MDVEEAYEILGIDEDTDDDFIISAFQSKVN---DDPSQKDTLREALRVIAESR 51 (62)
T ss_pred CCHHHHHHHhCcCCCCCHHHHHHHHHHHHH---cChHhHHHHHHHHHHHHHHc
Confidence 677899999999999999999999998888 66777777888888885544
No 69
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=96.59 E-value=0.0036 Score=53.42 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=33.0
Q ss_pred CCHHHHHHHHHHHHHHhCCCh-------------hhHHHHHHHHHHHHhHHHhhh
Q 025418 74 ASEEEIWGSRNFLLEQYTGHE-------------RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D~-------------~~~~~IeaAYD~Ilm~~l~~R 115 (253)
-+.++|+++|+++.++||||. +....||.||+.+ .+.+++.
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L-~~p~~Ra 56 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTL-KDPLMRA 56 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHh-CChhhhH
Confidence 357899999999999999994 2457999999998 4555444
No 70
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=95.13 E-value=0.021 Score=47.63 Aligned_cols=57 Identities=16% Similarity=0.149 Sum_probs=41.3
Q ss_pred CCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHHHhHHHhhh
Q 025418 58 RIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKLLMTSFRRR 115 (253)
Q Consensus 58 ~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~Ilm~~l~~R 115 (253)
.|+.+...++|||+++.+-|||++.|++|....++++ --..+|..|.|.| ++.++.+
T Consensus 54 ~Mtl~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl-~~El~~~ 114 (127)
T PF03656_consen 54 GMTLDEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERL-EQELKEE 114 (127)
T ss_dssp ---HHHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHH-HHHHHHH
T ss_pred CCCHHHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHH-HHHHHHH
Confidence 5888899999999999999999999999999998763 3566999999998 4555444
No 71
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.041 Score=51.87 Aligned_cols=67 Identities=22% Similarity=0.155 Sum_probs=54.3
Q ss_pred CCCCCCCCCCcccccCCCC---CCCHHHHHHHHHHHHHHhCCChh----------hHHHHHHHHHHHHhHHHhhhhhccc
Q 025418 54 PTFSRIKVWDPYKRLGISP---YASEEEIWGSRNFLLEQYTGHER----------SEESIEAAFEKLLMTSFRRRKKEKI 120 (253)
Q Consensus 54 ~~fp~~~~~dPY~~LGVs~---~AS~eEIk~A~~~L~~~y~~D~~----------~~~~IeaAYD~Ilm~~l~~R~~Gki 120 (253)
..|-+-.-.|.|..||++. -|..+.|.+|.++.+-+||||.. .+.-|..|||.+ .++-+++|--..
T Consensus 35 ~d~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL-~D~~~R~qyDS~ 113 (379)
T COG5269 35 EDFKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVL-GDRKLRLQYDSN 113 (379)
T ss_pred hhhhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHh-ccHHHHhhcccc
Confidence 3444555689999999986 58899999999999999999975 578999999997 677777775443
Q ss_pred c
Q 025418 121 N 121 (253)
Q Consensus 121 ~ 121 (253)
+
T Consensus 114 d 114 (379)
T COG5269 114 D 114 (379)
T ss_pred c
Confidence 3
No 72
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=92.77 E-value=5.9 Score=34.79 Aligned_cols=33 Identities=27% Similarity=0.346 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhH
Q 025418 78 EIWGSRNFLLEQYTGHERSEESIEAAFEKLLMT 110 (253)
Q Consensus 78 EIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~ 110 (253)
=+.+..+.|.+.--+|++..+-+++..|.|+..
T Consensus 9 y~~~l~~~L~~~~~~e~~~e~~L~eil~~Llea 41 (206)
T PF06570_consen 9 YIFDLRKYLRSSGVSEEEIEELLEEILPHLLEA 41 (206)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 345566666444456666777777777777643
No 73
>PRK07668 hypothetical protein; Validated
Probab=82.64 E-value=41 Score=31.24 Aligned_cols=135 Identities=15% Similarity=0.203 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhcccchhhhhhhcccCCC-hhhhhhhccccCCC-hhhHHHHH
Q 025418 79 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKINLKSRLKKQVEESP-PWFKNLLNFVELPP-KDVIFRRL 156 (253)
Q Consensus 79 Ik~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki~v~~~ir~~~~~~p-~W~~~ll~r~~~Ps-~~~l~~~~ 156 (253)
+.+..+.|..+.-+|++..+-+++.-|.++.. -++|+- + ++--+.+| .|.+.+....+.+. ..-.....
T Consensus 10 l~~L~~yL~~~glseeeieeiL~Ei~~hLlEg----Qk~GkT-A----~~IfG~sPk~yA~EL~~~~~~~~~~~~~~l~~ 80 (254)
T PRK07668 10 LDDTRVYLIAKGIKEEDIESFLEDAELHLIEG----EKDGKT-V----EDIFGDSPKEYANELVKEMEVDRKENIKLILF 80 (254)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHcCCc-H----HHHhCCCHHHHHHHHhcccCCCcchHHHHHHH
Confidence 33444455444456666666666666666432 235553 1 11111123 23555553333333 33334556
Q ss_pred HHHHHHHHHHH---hccCCCCc-----------hHHHHHHHHHHHHHhhhh-----hhhHHHHHHHHHHHHHHHHHHhhh
Q 025418 157 FLFAFMGGWSI---MNSAEGGP-----------AFQVAVSLAACIYFLNEK-----TKSLARASIIGLGALASGWILGSV 217 (253)
Q Consensus 157 ~~f~~L~~~~l---~~~~~~~p-----------~lqLalsl~a~iYfL~~K-----~k~lgRA~ll~~g~L~~G~llGs~ 217 (253)
++-+.++.|++ ++++.+++ ++-+.++....+|++++- .++..+...+..+.+..+++++..
T Consensus 81 ~ii~~l~~~~i~~~~f~~~~~~~~~s~~~iig~~~~~~l~i~~~~~~~r~~~fk~~~~~~~~i~~~~~~~~p~~l~i~i~ 160 (254)
T PRK07668 81 IIIGILSFWIIANILFGNPNHPLTYSLIQLIGYPISLILTIIGLIFLLRMASFKSKLTEKWFLIIYLVILIPMLLIVAIM 160 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeehHHhhHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 66677888875 33331221 234444444444544432 344445555555666667777776
Q ss_pred hcccc
Q 025418 218 VVPMI 222 (253)
Q Consensus 218 l~~~i 222 (253)
+.+-.
T Consensus 161 ~l~k~ 165 (254)
T PRK07668 161 FLNKW 165 (254)
T ss_pred HHHhh
Confidence 65443
No 74
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=77.24 E-value=6.4 Score=30.62 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.6
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHh----CCChhhHHHHHHHHHHH
Q 025418 65 YKRLGISPYASEEEIWGSRNFLLEQY----TGHERSEESIEAAFEKL 107 (253)
Q Consensus 65 Y~~LGVs~~AS~eEIk~A~~~L~~~y----~~D~~~~~~IeaAYD~I 107 (253)
-+..|..|-|+.+||+.|-.+.+++. ||.+...+..|+|.|.|
T Consensus 6 k~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~PS~~n~~AFe~AV~~i 52 (88)
T COG5552 6 KELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVAEI 52 (88)
T ss_pred HHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCcchhhHHHHHHHHHHH
Confidence 35678899999999999988877776 45566667777777766
No 75
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=74.37 E-value=10 Score=35.04 Aligned_cols=69 Identities=14% Similarity=0.273 Sum_probs=43.4
Q ss_pred HHHHHHHHhHHHhhhhh--cccchhhhhhh--cccCCChhhhhhhccccCCChhhHHHHHHHHHHHHHHHHhcc
Q 025418 101 EAAFEKLLMTSFRRRKK--EKINLKSRLKK--QVEESPPWFKNLLNFVELPPKDVIFRRLFLFAFMGGWSIMNS 170 (253)
Q Consensus 101 eaAYD~Ilm~~l~~R~~--Gki~v~~~ir~--~~~~~p~W~~~ll~r~~~Ps~~~l~~~~~~f~~L~~~~l~~~ 170 (253)
+--||.++....++||- ..=..+.+... =+....||. .++.||..|..+.+-=|++..|+++++.+-..
T Consensus 111 ~~DWd~vIdaEv~rRK~LE~nPe~s~n~epv~FdtSiiPWW-aW~~rf~l~~aE~lNGR~AMiGFvaal~~E~~ 183 (250)
T PLN00014 111 KTDWDAVIDAEVVRRKWLEDNPETSSNDEPVLFDTSIIPWW-AWVKRFHLPEAELLNGRAAMVGFFMAYLVDSL 183 (250)
T ss_pred CcchHHHHHHHHHHHHHHhhCccccCCCCCceeecccccHH-HHHHhccCchhHhhhhHHHHHHHHHHHHHHHH
Confidence 34578888888888872 11101111110 112335776 57789999999999989988888887766443
No 76
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=69.75 E-value=69 Score=27.21 Aligned_cols=52 Identities=10% Similarity=-0.009 Sum_probs=30.9
Q ss_pred HHhccCCCCchHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHHHHHHhhhh
Q 025418 166 SIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLA--RASIIGLGALASGWILGSVV 218 (253)
Q Consensus 166 ~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lg--RA~ll~~g~L~~G~llGs~l 218 (253)
.++++ .++..+.++.-++.+++++.+...+.. .-+...++++++|.+...+.
T Consensus 118 a~lfg-g~~~~~~~a~i~g~~~~~~~~~~~r~~~~~~~~~~~aa~~~~~~a~~~~ 171 (193)
T PF06738_consen 118 ALLFG-GSWIDMIVAFILGLLVGLLRQLLSRRRLNSFIQEFIAAFLASLLAALLA 171 (193)
T ss_pred HHHHC-CCHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 33433 347778888778888888888765543 33444445555555444433
No 77
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=66.80 E-value=24 Score=27.31 Aligned_cols=62 Identities=21% Similarity=0.232 Sum_probs=43.0
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHhhhhcccc-ccccCCCcccHHHHHHHHHHHHHHHhhhc
Q 025418 190 LNEKTKSLARASIIGLGALASGWILGSVVVPMI-PTVLIHPTWTLELLTSLVAYFFLFLACTF 251 (253)
Q Consensus 190 L~~K~k~lgRA~ll~~g~L~~G~llGs~l~~~i-~~~~l~~~~s~e~i~sl~t~vlLwl~ssf 251 (253)
|.++.+++++.+.+.+..+-.|.++-....|-+ ..+..+++.|.-.+.++.-+++-|+.+-.
T Consensus 10 L~r~r~r~~~~l~~i~l~~y~~~~ll~a~~p~~m~~~v~~G~~t~g~~~g~~~~~~~~~l~~~ 72 (91)
T PF04341_consen 10 LVRRRRRLAWPLSAIFLVLYFGFVLLSAFAPELMATPVFPGSLTLGIVLGLGQIVFAWVLTWL 72 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHcCcccCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 456778888888887777777777777776433 22223245677888888888888887643
No 78
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=65.97 E-value=12 Score=29.06 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=20.1
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCC
Q 025418 68 LGISPYASEEEIWGSRNFLLEQYTG 92 (253)
Q Consensus 68 LGVs~~AS~eEIk~A~~~L~~~y~~ 92 (253)
-|..|-|++|||+.|-.+-+++-.|
T Consensus 9 ~~fePpaT~~EI~aAAlQyVRKvSG 33 (78)
T PF10041_consen 9 RNFEPPATDEEIRAAALQYVRKVSG 33 (78)
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHcc
Confidence 3567889999999998777777654
No 79
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=63.06 E-value=52 Score=34.72 Aligned_cols=90 Identities=13% Similarity=0.056 Sum_probs=47.9
Q ss_pred cCCChhhhhhhccc------cCCChhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Q 025418 131 EESPPWFKNLLNFV------ELPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIG 204 (253)
Q Consensus 131 ~~~p~W~~~ll~r~------~~Ps~~~l~~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lgRA~ll~ 204 (253)
++.|+=+++++..| ..|+..+...+..+-..|.+.+.+. =+.|-.-++ .+.+|+..|...---++-.+
T Consensus 5 ~~~p~~~~~~~~~~~~~~~~~~P~r~~~~~r~~~a~~L~l~i~~~--l~~P~~a~a---~~~vfivsqp~~g~t~~kai- 78 (683)
T PRK11427 5 NSLPLPVVRLLAFFHEELSERRPGRVPQTLQLWVGCLLVILISMT--FEIPFLALS---LAVLFYGIQSNAFYTKFVAI- 78 (683)
T ss_pred ccCChhHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH--cCCCHHHHH---HHHHHheeccchHHHHHHHH-
Confidence 34455455555433 3588888887777645554444332 223444444 56789999886544444433
Q ss_pred HHHHHHHHHHhhhhccccccccCC
Q 025418 205 LGALASGWILGSVVVPMIPTVLIH 228 (253)
Q Consensus 205 ~g~L~~G~llGs~l~~~i~~~~l~ 228 (253)
+.++|.++|..++-++.+..+.
T Consensus 79 --~r~vgt~lg~~~~vll~~~~v~ 100 (683)
T PRK11427 79 --LFVVATVLEIGSLFLIYKWSYG 100 (683)
T ss_pred --HHHHHHHHHHHHHHHHHHHhcc
Confidence 2345555555554333333333
No 80
>PRK11056 hypothetical protein; Provisional
Probab=60.65 E-value=62 Score=27.05 Aligned_cols=65 Identities=11% Similarity=0.156 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHH-HHHHHHHHhh
Q 025418 180 AVSLAACIYFLNEKTKSL---ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSL-VAYFFLFLAC 249 (253)
Q Consensus 180 alsl~a~iYfL~~K~k~l---gRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl-~t~vlLwl~s 249 (253)
.+++...+|-|+|+-.+- .-.-.++++|+++|.+..+.++-.=-|.+=+ +-+-++ ...+.+|++-
T Consensus 41 lIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraeyPeiGS-----NF~p~il~~~L~~Wi~~ 109 (120)
T PRK11056 41 LIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSAFVRAEYPEIGS-----NFFPAVLSVILVFWIGR 109 (120)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHhcCccccc-----chHHHHHHHHHHHHHHH
Confidence 457888899999883221 2234567888999999999996542232222 223333 3345678764
No 81
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=59.71 E-value=13 Score=35.51 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=31.8
Q ss_pred hHHHHHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHH
Q 025418 176 AFQVAVSLAA--CIYFLNEKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFL 247 (253)
Q Consensus 176 ~lqLalsl~a--~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t~vlLwl 247 (253)
++..+.+++. .+|.+.-|++.-- ..++|.+.|+.= +++-=..+.++.+.+-+. ++..+++|-
T Consensus 125 a~l~~~gi~~Yv~vYT~~lKR~T~~--------NiviGg~aGa~P-pliGwaAvtg~~~~~a~~-Lf~IiF~Wt 188 (304)
T COG0109 125 AVLGLFGIFFYVVVYTLWLKRRTPQ--------NIVIGGFAGAMP-PLIGWAAVTGSISLGAIL-LFAIIFLWT 188 (304)
T ss_pred HHHHHHHHHHHhhhhhhhccCCccc--------ceeeeecccccc-ccceeeeeeCCCCchHHH-HHHHHHHhc
Confidence 4444444443 5666655654432 144455555432 222112244555566665 888888884
No 82
>PF11351 DUF3154: Protein of unknown function (DUF3154); InterPro: IPR021497 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=55.82 E-value=88 Score=25.64 Aligned_cols=56 Identities=5% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHHHhHHHhh----hhhcccchhhhhhhcccCCChhhhhhh
Q 025418 83 RNFLLEQYTGHERSEESIEAAFEKLLMTSFRR----RKKEKINLKSRLKKQVEESPPWFKNLL 141 (253)
Q Consensus 83 ~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~----R~~Gki~v~~~ir~~~~~~p~W~~~ll 141 (253)
-..++.+.++|++..++.+.+....-+++..+ +.++..+ ...-..+..|+|++++-
T Consensus 3 v~~~~d~~~~~~e~~~~~~~~l~~~~~~~~~~e~~~~~~~~~~---~~~~eln~~~afv~rwR 62 (123)
T PF11351_consen 3 VGETIDVFRPDPEERAQAKAELQQAALEQFAAEFEAARRARFD---RMQAELNRADAFVRRWR 62 (123)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHhcCcccccccc
Confidence 35678888999988777777776665554222 2223321 12223455567876543
No 83
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=52.79 E-value=2.2e+02 Score=27.33 Aligned_cols=37 Identities=24% Similarity=0.349 Sum_probs=23.5
Q ss_pred HHHHhhhhhhhH-HHHHHHHHHHHHHHHHHhhhhcccc
Q 025418 186 CIYFLNEKTKSL-ARASIIGLGALASGWILGSVVVPMI 222 (253)
Q Consensus 186 ~iYfL~~K~k~l-gRA~ll~~g~L~~G~llGs~l~~~i 222 (253)
.-|.+|.+-+++ +.-+.+-+.+++=|.+.|..+.+..
T Consensus 152 ~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~ 189 (299)
T PF05884_consen 152 AYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLY 189 (299)
T ss_pred HHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 345666654444 3344455677888999999886643
No 84
>PF01988 VIT1: VIT family; InterPro: IPR008217 Proteins containing this entry have no known function and are predicted to be integral membrane proteins. They include the Ccc1 protein from Saccharomyces cerevisiae (Baker's yeast) (P47818 from SWISSPROT) that may have a role in regulating calcium levels [].
Probab=51.60 E-value=1.7e+02 Score=25.73 Aligned_cols=23 Identities=30% Similarity=0.323 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 025418 194 TKSLARASIIGLGALASGWILGS 216 (253)
Q Consensus 194 ~k~lgRA~ll~~g~L~~G~llGs 216 (253)
.++..|.+++++++.+++.++|.
T Consensus 190 ~~~~l~~~~~G~~aa~~~~~iG~ 212 (213)
T PF01988_consen 190 WRSGLEMLLIGLIAAAVTYLIGY 212 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 46667777788777777777775
No 85
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.45 E-value=29 Score=29.30 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=37.0
Q ss_pred CCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHHHHHHH
Q 025418 59 IKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHE----RSEESIEAAFEKL 107 (253)
Q Consensus 59 ~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~----~~~~~IeaAYD~I 107 (253)
|..+..-++|+|++.-+.|||.+-|.+|-+-....+ --..+|=.|-|.|
T Consensus 56 iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 56 ITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred ccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 778889999999999999999999999987653221 1234555565555
No 86
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.91 E-value=25 Score=29.28 Aligned_cols=15 Identities=20% Similarity=0.162 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHh
Q 025418 154 RRLFLFAFMGGWSIM 168 (253)
Q Consensus 154 ~~~~~f~~L~~~~l~ 168 (253)
+.+++||+|++.+..
T Consensus 66 i~~Ii~gv~aGvIg~ 80 (122)
T PF01102_consen 66 IIGIIFGVMAGVIGI 80 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeehhHHHHHHHHHH
Confidence 466788888776543
No 87
>COG0141 HisD Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=48.08 E-value=34 Score=34.17 Aligned_cols=37 Identities=24% Similarity=0.293 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhc
Q 025418 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (253)
.|.+||.+|++++ |++..+.|+.|++.| +++.++|+.
T Consensus 61 Vs~~ei~aA~~~v------~~~~~eai~~A~~~I--~~fH~~Q~p 97 (425)
T COG0141 61 VSAAEIDAAYQRL------DPEVKEALEVAAENI--EAFHEAQLP 97 (425)
T ss_pred cCHHHHHHHHHhC------CHHHHHHHHHHHHHH--HHHHHhhCC
Confidence 6889999999877 788899999999998 788888875
No 88
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=47.46 E-value=1e+02 Score=25.70 Aligned_cols=65 Identities=12% Similarity=0.189 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH-HHHHHHhh
Q 025418 180 AVSLAACIYFLNEKTKSL---ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA-YFFLFLAC 249 (253)
Q Consensus 180 alsl~a~iYfL~~K~k~l---gRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t-~vlLwl~s 249 (253)
.+++...+|-|+|+-.+- .-.-.++++|+++|.+..+.++-.--|..= .+-+-++++ .+++|++-
T Consensus 41 lIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA~vraqyPeiG-----SNFfp~il~l~L~~Wi~~ 109 (117)
T PF07226_consen 41 LIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSAFVRAQYPEIG-----SNFFPSILCLILVFWIGY 109 (117)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHhchhhh-----hhHHHHHHHHHHHHHHHH
Confidence 357788889998873221 233456788999999999999654222221 123333333 34567763
No 89
>TIGR00069 hisD histidinol dehydrogenase. This model describes a polypeptide sequence catalyzing the final step in histidine biosynthesis, found sometimes as an independent protein and sometimes as a part of a multifunctional protein.
Probab=45.67 E-value=29 Score=34.26 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhcc
Q 025418 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEK 119 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gk 119 (253)
-|.+||++||+++ |++..+.|+.|++.| +++.++|+.+
T Consensus 33 vs~~ei~~A~~~~------~~~~~~ai~~A~~~I--~~fh~~q~~~ 70 (393)
T TIGR00069 33 VSEEEIEAAYAAV------DPELKEALELAAENI--RAFHEAQLPR 70 (393)
T ss_pred cCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 4789999999875 888999999999999 6676776544
No 90
>cd06572 Histidinol_dh Histidinol dehydrogenase, HisD, E.C 1.1.1.23. Histidinol dehydrogenase catalyzes the last two steps in the L-histidine biosynthesis pathway, which is conserved in bacteria, archaea, fungi, and plants. These last two steps are (i) the NAD-dependent oxidation of L-histidinol to L-histidinaldehyde, and (ii) the NAD-dependent oxidation of L-histidinaldehyde to L-histidine. In most fungi and in the unicellular choanoflagellate Monosiga bevicollis, the HisD domain is fused with units that catalyze the second and third biosynthesis steps in this same pathway.
Probab=45.55 E-value=28 Score=34.27 Aligned_cols=39 Identities=31% Similarity=0.320 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhcc
Q 025418 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEK 119 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gk 119 (253)
--|.+||++|++.+ |++..+.|+.||+.| .++.++|..+
T Consensus 36 ~vs~~ei~~A~~~~------~~~~~~ai~~A~~nI--~~fh~~q~~~ 74 (390)
T cd06572 36 RVSEEEIDAAYAAV------DPELKEAIELAAENI--RAFHEAQLPK 74 (390)
T ss_pred ccCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 45789999999877 888999999999998 6777777654
No 91
>PTZ00352 60S ribosomal protein L13; Provisional
Probab=45.17 E-value=34 Score=31.16 Aligned_cols=66 Identities=21% Similarity=0.161 Sum_probs=43.3
Q ss_pred CCCCCCCCCCccc-ccCCCCCCCHHHHHH--HHHHHHHHhCCC----------h-hhHHHHHHHHHHHHhHHHhhhhhcc
Q 025418 54 PTFSRIKVWDPYK-RLGISPYASEEEIWG--SRNFLLEQYTGH----------E-RSEESIEAAFEKLLMTSFRRRKKEK 119 (253)
Q Consensus 54 ~~fp~~~~~dPY~-~LGVs~~AS~eEIk~--A~~~L~~~y~~D----------~-~~~~~IeaAYD~Ilm~~l~~R~~Gk 119 (253)
-.||+-.. -|=+ .=||+.|+|.||++. |-..+...+-|= + -..+.=-.||..|-+++...|..|.
T Consensus 122 vlFPrk~~-k~kkG~~gip~Dss~ee~~~~~a~~q~~g~vmPi~~~~~~~~~r~it~eek~~~Ay~tLR~aR~~ar~~G~ 200 (212)
T PTZ00352 122 VLFPRKGK-KPKKGFAGIPADTSKEEVVALPVKQNKNSEVIPFQRTPKREKARVITKEERAFNAYRTLRQAKLNAKFVGK 200 (212)
T ss_pred eeecCCCC-ccccCCCCCCCCCCHHHHHHHHHHHhhcCceecccccccccccccCCHHHHHhhHHHHHHHHHHHHHHhhH
Confidence 56887543 3333 358999999999998 654332121111 1 1233445899999999999999886
Q ss_pred c
Q 025418 120 I 120 (253)
Q Consensus 120 i 120 (253)
-
T Consensus 201 r 201 (212)
T PTZ00352 201 K 201 (212)
T ss_pred H
Confidence 3
No 92
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=44.28 E-value=1.7e+02 Score=24.86 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=2.5
Q ss_pred HHHHHhH
Q 025418 104 FEKLLMT 110 (253)
Q Consensus 104 YD~Ilm~ 110 (253)
||-...|
T Consensus 29 Y~e~f~d 35 (181)
T PF08006_consen 29 YEEYFDD 35 (181)
T ss_pred HHHHHHH
Confidence 3333333
No 93
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=44.15 E-value=31 Score=34.27 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhc
Q 025418 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (253)
.-|.+||++||+++ |++..+.|+.|+|.| .++.++|+.
T Consensus 49 ~Vs~~ei~~A~~~l------~~~~~~Ai~~A~~~I--~~fh~~q~~ 86 (412)
T PF00815_consen 49 RVSEEEIAAAYAKL------DPELREAIEQAAENI--RAFHEAQLP 86 (412)
T ss_dssp B--HHHHHHHHHHS-------HHHHHHHHHHHHHH--HHHHHTT--
T ss_pred EecHHHHHhhhhcC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 44789999999988 788999999999999 677777763
No 94
>PF03729 DUF308: Short repeat of unknown function (DUF308); InterPro: IPR005325 This represents a group of short repeats that occurs in a limited number of membrane proteins. It may divide further in short repeats of around 7-10 residues of the pattern G-#-X(2)-#(2)-X (#=hydrophobic).
Probab=43.66 E-value=73 Score=22.06 Aligned_cols=59 Identities=19% Similarity=0.236 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHH-------HHHHhhhhh--hhHHHHHHHHHHHHHHHHHH
Q 025418 156 LFLFAFMGGWSIMNSAEGGPAFQVAVSLAA-------CIYFLNEKT--KSLARASIIGLGALASGWIL 214 (253)
Q Consensus 156 ~~~f~~L~~~~l~~~~~~~p~lqLalsl~a-------~iYfL~~K~--k~lgRA~ll~~g~L~~G~ll 214 (253)
+.++.++|++.+..|......+...+|... .+...++|. +..++.++.++..+++|.++
T Consensus 3 Gil~iv~Gi~~l~~p~~~~~~~~~i~g~~~i~~Gi~~l~~~~~~~~~~~~~~~~l~~gi~~i~~Gi~~ 70 (72)
T PF03729_consen 3 GILFIVLGILLLFNPDASLAALAIILGIWLIISGIFQLISAFRRRKGSKGWWWSLLSGILSIVLGIIL 70 (72)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHH
Confidence 456677777777777653223333222221 112222332 36677777777777777653
No 95
>TIGR01337 apcB allophycocyanin, beta subunit. The alpha and beta subunits of allophycocyanin form heterodimers, six of which associate into larger aggregates as part of the phycobilisome, a light-harvesting complex of phycobiliproteins and linker proteins. This model describes allophycocyanin beta subunit. Other, homologous phyobiliproteins include allophycocyanin alpha chain and the phycocyanin and phycoerythrin alpha and beta chains.
Probab=43.32 E-value=33 Score=29.76 Aligned_cols=48 Identities=13% Similarity=0.223 Sum_probs=41.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLL 108 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Il 108 (253)
.++=|+.|||+-++.-+-|+.-++.-.+...++.+..++++..+|.++
T Consensus 112 lrE~y~~LgvP~~~~v~al~~mk~~~~~~~~~~~~~~~e~~~yFd~li 159 (167)
T TIGR01337 112 LKETYNSLGVPIGPTVRAIQIMKEVIISLVGPDNDAGKEIGEPFDYMC 159 (167)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcHhHHHHHHHHHHHHH
Confidence 357899999999999999998888888888887777789999999985
No 96
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=43.29 E-value=33 Score=34.24 Aligned_cols=39 Identities=31% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhcc
Q 025418 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEK 119 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gk 119 (253)
.-|.|||++||+++ |++..+.|+.||+.| +++.++|..+
T Consensus 64 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~~I--~~Fh~~q~~~ 102 (425)
T PRK00877 64 RVSEEEIEAAYERL------DPELREALEEAAENI--RAFHEAQKPE 102 (425)
T ss_pred eeCHHHHHHHHhcC------CHHHHHHHHHHHHHH--HHHHHHhCCC
Confidence 35789999999875 888999999999998 6777777653
No 97
>PRK13770 histidinol dehydrogenase; Provisional
Probab=42.64 E-value=35 Score=33.98 Aligned_cols=37 Identities=19% Similarity=0.475 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhc
Q 025418 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (253)
-|.+||++||+++ |++..+.|+.|++.| .++.++|+.
T Consensus 57 Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~ 93 (416)
T PRK13770 57 ISHEQIKAAFDTL------DEKTKQALQQSYERI--KAYQESIKQ 93 (416)
T ss_pred eCHHHHHHHHHcC------CHHHHHHHHHHHHHH--HHHHHHhCC
Confidence 4889999999876 788899999999999 666666654
No 98
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=42.12 E-value=3e+02 Score=28.34 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=42.0
Q ss_pred hhhhhccccCCChhhHHHHHH---HHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhh-hh----hhhHHHH-HHHHHHH
Q 025418 137 FKNLLNFVELPPKDVIFRRLF---LFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLN-EK----TKSLARA-SIIGLGA 207 (253)
Q Consensus 137 ~~~ll~r~~~Ps~~~l~~~~~---~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~-~K----~k~lgRA-~ll~~g~ 207 (253)
.+.+...+.+|..+++--+.. .|-++ +.+++++. |=++.+.+ ++..+... +| .+++++- +..++.+
T Consensus 329 FE~lv~mYg~P~Y~EiDPT~~~ai~f~lf--FGmM~gD~-GyGLil~l--~~~~l~~~~~k~~~~~~~~~~il~~~gi~s 403 (646)
T PRK05771 329 FESLTEMYSLPKYNEIDPTPFLAIFFPLF--FGMMLGDA-GYGLLLLL--IGLLLSFKLKKKSEGLKRLLKILIYLGIST 403 (646)
T ss_pred HHHHHHHcCCCCCCCcCCccHHHHHHHHH--HHHHHHhH-HHHHHHHH--HHHHHHHhcccccHHHHHHHHHHHHHHHHH
Confidence 334455667887777653332 22222 22333333 44555553 22222111 11 2444433 3467788
Q ss_pred HHHHHHHhhhhcccc
Q 025418 208 LASGWILGSVVVPMI 222 (253)
Q Consensus 208 L~~G~llGs~l~~~i 222 (253)
.+.|++-|+++...+
T Consensus 404 ii~G~lyG~fFG~~~ 418 (646)
T PRK05771 404 IIWGLLTGSFFGFSL 418 (646)
T ss_pred HHHHHHHHhHhcCcc
Confidence 999999999986554
No 99
>PRK12447 histidinol dehydrogenase; Reviewed
Probab=41.43 E-value=38 Score=33.83 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhc
Q 025418 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKE 118 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~G 118 (253)
.-|.+||++||+++ |++..+.|+.|++.| .++.++|..
T Consensus 57 ~Vs~~ei~~A~~~v------~~~~~~ai~~A~~nI--~~fh~~q~~ 94 (426)
T PRK12447 57 RLSAAEIDAAVAKV------PEQVKEDIRFAQDQV--RRFAEAQRD 94 (426)
T ss_pred ccCHHHHHHHHhhC------CHHHHHHHHHHHHHH--HHHHHHhcC
Confidence 35789999999875 888899999999999 666666654
No 100
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=39.16 E-value=99 Score=24.92 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=15.6
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 025418 185 ACIYFLNEKTKSLARASIIGLGALASGWILGSV 217 (253)
Q Consensus 185 a~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~ 217 (253)
+..++|-++... ...+++..+++|.++|-.
T Consensus 61 ~lG~WLD~~~~t---~~~~tl~~lllGv~~G~~ 90 (100)
T TIGR02230 61 AVGIWLDRHYPS---PFSWTLTMLIVGVVIGCL 90 (100)
T ss_pred HHHHHHHhhcCC---CcHHHHHHHHHHHHHHHH
Confidence 344556555432 234444556677666643
No 101
>PRK10692 hypothetical protein; Provisional
Probab=37.58 E-value=82 Score=25.13 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=28.8
Q ss_pred HHHHHHH-HHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhh
Q 025418 201 SIIGLGA-LASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLAC 249 (253)
Q Consensus 201 ~ll~~g~-L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t~vlLwl~s 249 (253)
++.++|- +-+|.+..+++..+ +...+|+..+--.+.++|.=.++|++.
T Consensus 12 ~lMglGmv~Mv~gigysi~~~i-~~L~Lp~~~~~gal~~IFiGAllWL~G 60 (92)
T PRK10692 12 VLMGLGLVVMVVGVGYSILNQL-PQLNLPQFFAHGALLSIFVGALLWLAG 60 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-ccCCchHHHHhhHHHHHHHHHHHHHhc
Confidence 3444443 33555666666443 555566555556777888888888864
No 102
>PF10762 DUF2583: Protein of unknown function (DUF2583) ; InterPro: IPR019698 Some members in this entry are annotated as YchH however currently no function is known.
Probab=37.55 E-value=86 Score=24.90 Aligned_cols=48 Identities=23% Similarity=0.274 Sum_probs=29.6
Q ss_pred HHHHHHH-HHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhh
Q 025418 201 SIIGLGA-LASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLAC 249 (253)
Q Consensus 201 ~ll~~g~-L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t~vlLwl~s 249 (253)
++.++|- +-+|.+..+++..+ |...+|+..+--.+.++|.=.++|++.
T Consensus 12 ~lMglGmv~Mv~gigysi~~~~-~~L~Lp~~~~~gal~~IFiGAllWL~G 60 (89)
T PF10762_consen 12 VLMGLGMVVMVGGIGYSILSQI-PQLGLPQFLAHGALFSIFIGALLWLVG 60 (89)
T ss_pred HHHHHhHHHHHHhHHHHHHHhc-ccCCCcHHHHhhHHHHHHHHHHHHHhc
Confidence 3444443 33555566666443 555566655566778888888889864
No 103
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=37.52 E-value=2.7e+02 Score=24.78 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=28.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH---HHHHhhhhhhh-HHHHHHH
Q 025418 146 LPPKDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAA---CIYFLNEKTKS-LARASII 203 (253)
Q Consensus 146 ~Ps~~~l~~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a---~iYfL~~K~k~-lgRA~ll 203 (253)
.|+-.++.+...+|..+...+-=.+=+ ..+|+++.++. ..|.+.|+.++ |+-+.+.
T Consensus 78 ~~~w~~v~R~i~~FvGi~~airkl~w~--s~~Q~s~~lalln~~LW~lfDrT~sGf~ls~~v 137 (193)
T PF07281_consen 78 KPDWSSVLRSIGAFVGISFAIRKLPWS--SSLQASITLALLNPGLWWLFDRTRSGFLLSTAV 137 (193)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 345566666666664443333211212 24665543332 77888888654 3333333
No 104
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=36.68 E-value=2.2e+02 Score=22.67 Aligned_cols=57 Identities=16% Similarity=0.108 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 025418 150 DVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALA 209 (253)
Q Consensus 150 ~~l~~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~L~ 209 (253)
.+..+-....+.+.++.++... -++.++..++..++...-..++..+..+++++.-+
T Consensus 70 ~~~~~~~~~~~~~~~y~~~~~~---lGf~~at~~~~~~~~~~~g~r~~~~~~~~s~~~~~ 126 (141)
T PF07331_consen 70 VDWKRVLLVLGLLVLYVLLLEY---LGFIIATFLFLFAFMLLLGERRWLRLLLISVVFAA 126 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 3333444444445455444332 24555544444444444444555555555543333
No 105
>CHL00089 apcF allophycocyanin beta 18 subunit
Probab=35.62 E-value=50 Score=28.87 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=40.6
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHHHHhC-CChhhHHHHHHHHHHHH
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLLEQYT-GHERSEESIEAAFEKLL 108 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~-~D~~~~~~IeaAYD~Il 108 (253)
++=|+.|||+.++.-+-|+.-++.-++.+. .|.+..+.|+.-+|.+.
T Consensus 114 rE~Y~~LgvP~~~~i~al~~mk~~~~~~~~~~~~~~~~~~~~yFd~l~ 161 (169)
T CHL00089 114 KDTYNSLGVPIAPTVRSIELLKEIIKEEIKSQNIDAHDYIDEPFQYMI 161 (169)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 468999999999999999999888888887 45577889999999984
No 106
>PF04932 Wzy_C: O-Antigen ligase; InterPro: IPR007016 This group of bacterial proteins are membrane proteins, which include O-antigen ligases (e.g. P26471 from SWISSPROT) and putative hydrogen carbonate transporters [].
Probab=34.86 E-value=1.2e+02 Score=24.23 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=14.4
Q ss_pred HHHHHhccCCCCchHHHHHHHHHHHHHhhhhh
Q 025418 163 GGWSIMNSAEGGPAFQVAVSLAACIYFLNEKT 194 (253)
Q Consensus 163 ~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~ 194 (253)
..+.++.....+.-+.+.+++...+++..++.
T Consensus 6 ~~~~i~~s~SR~~~i~~~~~~~~~~~~~~~~~ 37 (163)
T PF04932_consen 6 SLLAIFLSGSRGAWIALLIALILFLLLFYRKR 37 (163)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333333344455555555554444443
No 107
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=34.10 E-value=39 Score=33.79 Aligned_cols=31 Identities=0% Similarity=0.002 Sum_probs=26.9
Q ss_pred ccccCCCCCCCHHHHHHHHHHHHHHhCCChh
Q 025418 65 YKRLGISPYASEEEIWGSRNFLLEQYTGHER 95 (253)
Q Consensus 65 Y~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~ 95 (253)
.+-.+++.--+.++||+|||+-+.--|||+-
T Consensus 391 WqpVsltDLVtp~~VKKaYrKA~L~VHPDKl 421 (453)
T KOG0431|consen 391 WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKL 421 (453)
T ss_pred cccCchhhccCHHHHHHHHHhhhheeCcccc
Confidence 4556788889999999999999999999963
No 108
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=33.29 E-value=2.5e+02 Score=22.74 Aligned_cols=22 Identities=27% Similarity=0.265 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh
Q 025418 197 LARASIIGLGALASGWILGSVV 218 (253)
Q Consensus 197 lgRA~ll~~g~L~~G~llGs~l 218 (253)
-+.+++.+++++++|+++--.+
T Consensus 96 e~~~~l~~l~~l~~~~~~~~~~ 117 (135)
T PF04246_consen 96 ELWAILGGLLGLALGFLILRLF 117 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888887765544
No 109
>cd03166 CD63_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD63 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD63 is present in platelets, neutrophils, and endothelial cells, amongst others. In platelets it associates with the integrin alphaIIBbeta3 and may modulate alphaIIbbeta3-dependent cytoskeletal reorganization.
Probab=33.18 E-value=97 Score=23.12 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=21.4
Q ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 75 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 75 S~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
-.++|++..+..+++|+.|. .+..++|.|
T Consensus 7 v~~~i~~~l~~~~~~y~~~~----~~~~~~d~i 35 (99)
T cd03166 7 VMSEFNDSFNQMISNYNKTN----DFRKILDRM 35 (99)
T ss_pred HHHHHHHHHHHHHHHcCCCH----HHHHHHHHH
Confidence 35677777788888888762 467888887
No 110
>PRK11677 hypothetical protein; Provisional
Probab=32.91 E-value=36 Score=28.75 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhhccc
Q 025418 202 IIGLGALASGWILGSVVVPM 221 (253)
Q Consensus 202 ll~~g~L~~G~llGs~l~~~ 221 (253)
++++.+|++|.++|-+++-.
T Consensus 4 ~~a~i~livG~iiG~~~~R~ 23 (134)
T PRK11677 4 EYALIGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 56778899999999888654
No 111
>cd02435 CCC1 CCC1. CCC1: This domain is present in the CCC1, an iron and manganese transporter of Saccharomyces cerevisiae. CCC1 is a transmembrane protein that is located in the vacuole and transfers the iron and manganese ions from the cytosol to the vacuole. This domain may be unique to certain fungi and plants.
Probab=32.62 E-value=3.9e+02 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.079 Sum_probs=8.1
Q ss_pred HhCCChhhHHHHHHHHH
Q 025418 89 QYTGHERSEESIEAAFE 105 (253)
Q Consensus 89 ~y~~D~~~~~~IeaAYD 105 (253)
+..+|.++.+.+.+-|.
T Consensus 94 ~~~~~~E~~e~l~~~~~ 110 (241)
T cd02435 94 EASPSTEQEEIILYDLV 110 (241)
T ss_pred hhCcHHHHHHHHHHHHH
Confidence 33455555443444444
No 112
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=32.48 E-value=3.9e+02 Score=24.40 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHH
Q 025418 79 IWGSRNFLLEQYTGHERSEESIEAAFEKLLMTS 111 (253)
Q Consensus 79 Ik~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~ 111 (253)
|-.+-+++....+.|++...-+|++..+|+.++
T Consensus 24 vh~vtkqli~~gksdeeik~Il~e~ipqIleeQ 56 (226)
T COG4858 24 VHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQ 56 (226)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 344555666666788888888999999997654
No 113
>PLN02776 prenyltransferase
Probab=32.39 E-value=1.4e+02 Score=28.83 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=11.1
Q ss_pred cHHHHHHHHHHHHHHHhh
Q 025418 232 TLELLTSLVAYFFLFLAC 249 (253)
Q Consensus 232 s~e~i~sl~t~vlLwl~s 249 (253)
+++-+ -++..+++|-..
T Consensus 150 ~~~~~-~Lf~~~~~Wq~p 166 (341)
T PLN02776 150 DAGAM-VLAAALYFWQMP 166 (341)
T ss_pred CHHHH-HHHHHHHHHHHH
Confidence 34444 578888888763
No 114
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=32.07 E-value=97 Score=24.42 Aligned_cols=17 Identities=24% Similarity=0.583 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 025418 198 ARASIIGLGALASGWIL 214 (253)
Q Consensus 198 gRA~ll~~g~L~~G~ll 214 (253)
.|-+++|||.+++|.++
T Consensus 66 ~WN~~IGfg~~~~Gf~m 82 (87)
T PF06781_consen 66 NWNLAIGFGLMIVGFLM 82 (87)
T ss_pred chHHHHHHHHHHHHHHH
Confidence 46778888888888765
No 115
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=31.80 E-value=1.1e+02 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 025418 193 KTKSLARASIIGLGALASGWILGSVVV 219 (253)
Q Consensus 193 K~k~lgRA~ll~~g~L~~G~llGs~l~ 219 (253)
|.|+++|.+.+-+.|.++|.++|.+..
T Consensus 4 ~k~~~~~~~~~illg~~iGg~~G~~~~ 30 (248)
T PF11368_consen 4 KKKRILRFLLLILLGGLIGGFIGFFIG 30 (248)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999997777777777777664
No 116
>KOG3767 consensus Sideroflexin [General function prediction only]
Probab=31.49 E-value=40 Score=32.54 Aligned_cols=32 Identities=16% Similarity=0.475 Sum_probs=28.1
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE 94 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~ 94 (253)
.-|+.=.++++-+.||+++|++.....+|||-
T Consensus 55 ~~yk~G~~~p~~t~~~lW~Akkl~dS~~HPDT 86 (328)
T KOG3767|consen 55 EDYKAGKVPPGLTDDELWKAKKLYDSTFHPDT 86 (328)
T ss_pred HhhccCCcCCCCcHHHHHHHHHHHhcccCCCC
Confidence 34777788888999999999999999999994
No 117
>COG3167 PilO Tfp pilus assembly protein PilO [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.92 E-value=86 Score=28.45 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHHHHHHhCCC---hhhHHHHHHHHHHHH
Q 025418 74 ASEEEIWGSRNFLLEQYTGH---ERSEESIEAAFEKLL 108 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D---~~~~~~IeaAYD~Il 108 (253)
+.+||+|.+|+.+..+-..= +++..++|++||.++
T Consensus 56 ~eEe~LKs~~q~K~~~aanL~~lr~Ql~emee~~~~ll 93 (211)
T COG3167 56 AEEEELKSTYQQKAIQAANLEALRAQLAEMEERFDILL 93 (211)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHH
Confidence 67899999999988887643 457889999999983
No 118
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.73 E-value=61 Score=24.78 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhc
Q 025418 196 SLARASIIGLGALASGWILGSVVV 219 (253)
Q Consensus 196 ~lgRA~ll~~g~L~~G~llGs~l~ 219 (253)
+++-++++.+.||++|.+.|-+++
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fia 25 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888899999999998774
No 119
>COG0597 LspA Lipoprotein signal peptidase [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]
Probab=30.70 E-value=82 Score=27.38 Aligned_cols=20 Identities=15% Similarity=0.190 Sum_probs=10.4
Q ss_pred chHHHHHHHHHHHHHhhhhh
Q 025418 175 PAFQVAVSLAACIYFLNEKT 194 (253)
Q Consensus 175 p~lqLalsl~a~iYfL~~K~ 194 (253)
..+++++.++...|....+.
T Consensus 73 ~~i~~~vi~~l~~~l~~~~~ 92 (167)
T COG0597 73 LLIALLVILGLLYFLIRLKK 92 (167)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34566666555555544443
No 120
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=30.46 E-value=31 Score=28.18 Aligned_cols=52 Identities=23% Similarity=0.363 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcc-ccccccCCCcccHHHHHHHHHHHHHHHhhhcCC
Q 025418 198 ARASIIGLGALASGWILGSVVVP-MIPTVLIHPTWTLELLTSLVAYFFLFLACTFFK 253 (253)
Q Consensus 198 gRA~ll~~g~L~~G~llGs~l~~-~i~~~~l~~~~s~e~i~sl~t~vlLwl~ssfLr 253 (253)
+.++++++|.+++|-+++.++-. .+.+ .-.+.|++-.+ +..++-|+++-++|
T Consensus 4 ~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~-~~AGi~sq~~l---v~glvgW~~sYlfR 56 (104)
T PF11460_consen 4 IDVLLIGLGVFLLGGLLYGGLQAAGLDS-LSAGIWSQALL---VLGLVGWVSSYLFR 56 (104)
T ss_pred cceeeecHHHHHHHHHHHHHHHHcCCCc-hhhhHHHHHHH---HHHHHHHHhHHHhh
Confidence 34567888889999998888721 1111 11123433322 33348898887665
No 121
>PF05437 AzlD: Branched-chain amino acid transport protein (AzlD); InterPro: IPR008407 This family consists of a number of bacterial and archaeal branched-chain amino acid transport proteins. AzlD, a member of this group, has been shown by mutational analysis to be involved in branched-chain amino acid transport, and to be involved in conferring resistance to 4-azaleucine []. However, its exact role in these processes is not yet clear []. Based on its hydropathy profile, it has been suggested to be a membrane protein [].
Probab=30.20 E-value=2.5e+02 Score=21.40 Aligned_cols=63 Identities=19% Similarity=0.290 Sum_probs=33.7
Q ss_pred CChhhhhhhccccCCChhhHHHHHHHHHHHHHHHHhccCCC-----CchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 025418 133 SPPWFKNLLNFVELPPKDVIFRRLFLFAFMGGWSIMNSAEG-----GPAFQVAVSLAACIYFLNEKTKSLARASIIGLGA 207 (253)
Q Consensus 133 ~p~W~~~ll~r~~~Ps~~~l~~~~~~f~~L~~~~l~~~~~~-----~p~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~ 207 (253)
.|+|+++++ + ..+.+++++|.+-.++.+..+ +..-.++.. ....+..|.|+++.+++.|.++
T Consensus 28 ~~~~~~~~l---~-------~vp~avl~aLv~~~i~~~~~~~~~~~~~~~l~a~~---~~~~~~~~~~~~~~~v~~G~~~ 94 (99)
T PF05437_consen 28 LPPRVRRFL---R-------YVPPAVLAALVVPSIFFPTGSLELSLGNPYLIAAL---VAALVALRTRNLLLSVLAGVAA 94 (99)
T ss_pred CCHHHHHHH---H-------HhHHHHHHHHHHHHHccCccccccccchHHHHHHH---HHHHHHHHHcchHHHHHHHHHH
Confidence 477777666 1 123456677767777755432 222333322 2233334555788887776554
Q ss_pred H
Q 025418 208 L 208 (253)
Q Consensus 208 L 208 (253)
.
T Consensus 95 ~ 95 (99)
T PF05437_consen 95 F 95 (99)
T ss_pred H
Confidence 3
No 122
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=30.13 E-value=34 Score=17.94 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHH
Q 025418 96 SEESIEAAFEKL 107 (253)
Q Consensus 96 ~~~~IeaAYD~I 107 (253)
.+++|+.||+.|
T Consensus 2 ~~~~V~~aY~~l 13 (14)
T PF07709_consen 2 KFEKVKNAYEQL 13 (14)
T ss_pred cHHHHHHHHHhc
Confidence 356677777764
No 123
>PRK00523 hypothetical protein; Provisional
Probab=29.76 E-value=65 Score=24.67 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 025418 197 LARASIIGLGALASGWILGSVVV 219 (253)
Q Consensus 197 lgRA~ll~~g~L~~G~llGs~l~ 219 (253)
+|-++++++.+|++|.++|-+++
T Consensus 4 ~~l~I~l~i~~li~G~~~Gffia 26 (72)
T PRK00523 4 IGLALGLGIPLLIVGGIIGYFVS 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888999988887773
No 124
>COG1289 Predicted membrane protein [Function unknown]
Probab=29.59 E-value=5.4e+02 Score=26.60 Aligned_cols=14 Identities=29% Similarity=0.479 Sum_probs=7.4
Q ss_pred HHHHHHHhhhhccc
Q 025418 208 LASGWILGSVVVPM 221 (253)
Q Consensus 208 L~~G~llGs~l~~~ 221 (253)
.++|.++|.++.-.
T Consensus 410 Tllg~~~g~~~l~~ 423 (674)
T COG1289 410 TLLGLLLGLLVLLL 423 (674)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666655433
No 125
>PF13311 DUF4080: Protein of unknown function (DUF4080)
Probab=29.05 E-value=68 Score=27.98 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=25.6
Q ss_pred CCCCcccccCCCCCCCHHHHHHHHH--HHHHHhCC
Q 025418 60 KVWDPYKRLGISPYASEEEIWGSRN--FLLEQYTG 92 (253)
Q Consensus 60 ~~~dPY~~LGVs~~AS~eEIk~A~~--~L~~~y~~ 92 (253)
+..-||+||. ++.-|++||++-++ ++++.|-.
T Consensus 9 ~~~pPYEVL~-t~~Ls~~ei~~Lk~~e~~le~yyN 42 (190)
T PF13311_consen 9 SPYPPYEVLS-TKWLSFDEIQRLKRFEDMLEKYYN 42 (190)
T ss_pred CCCCCeeeee-CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 3456999998 77899999999876 77777743
No 126
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=29.03 E-value=2.1e+02 Score=27.31 Aligned_cols=45 Identities=18% Similarity=0.002 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhhhhhHH
Q 025418 154 RRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLA 198 (253)
Q Consensus 154 ~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lg 198 (253)
+-+.+.++.|+.....-..+-|=.-++++++...|++.||..+..
T Consensus 129 ~iAV~lA~~GV~~~~~~~g~lpwval~la~sf~~Ygl~RK~~~v~ 173 (293)
T COG2962 129 WIAVGLAAAGVLIQTWLLGSLPWVALALALSFGLYGLLRKKLKVD 173 (293)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHhcCCc
Confidence 445555666666665555667777888889999999999964443
No 127
>PF14490 HHH_4: Helix-hairpin-helix containing domain; PDB: 3GPL_A 3E1S_A 3GP8_A.
Probab=28.89 E-value=76 Score=24.39 Aligned_cols=46 Identities=13% Similarity=-0.017 Sum_probs=31.5
Q ss_pred CCCcccccCCCCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhH
Q 025418 61 VWDPYKRLGISPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMT 110 (253)
Q Consensus 61 ~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~ 110 (253)
.+|||..++-=++.+|+.+.+ ++++.+-+...-.+|.++-..++.+
T Consensus 41 ~~nPY~L~~~i~gi~F~~aD~----iA~~~g~~~~d~~Ri~A~i~~~L~~ 86 (94)
T PF14490_consen 41 KENPYRLIEDIDGIGFKTADK----IALKLGIEPDDPRRIRAAILYVLRE 86 (94)
T ss_dssp HH-STCCCB-SSSSBHHHHHH----HHHTTT--TT-HHHHHHHHHHHHHH
T ss_pred HHChHHHHHHccCCCHHHHHH----HHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 579999999558999988765 4445566666777888888888766
No 128
>PRK01844 hypothetical protein; Provisional
Probab=28.82 E-value=69 Score=24.53 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhc
Q 025418 197 LARASIIGLGALASGWILGSVVV 219 (253)
Q Consensus 197 lgRA~ll~~g~L~~G~llGs~l~ 219 (253)
+|-++++++.+|++|.++|-+++
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~a 25 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIA 25 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888889999998888773
No 129
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=28.63 E-value=2.8e+02 Score=22.73 Aligned_cols=65 Identities=15% Similarity=0.185 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHhccC-CC-CchHHHHH------HHHHHHHHhh-hhhhhHHHHHHHHHHHHHHHHHHh
Q 025418 150 DVIFRRLFLFAFMGGWSIMNSA-EG-GPAFQVAV------SLAACIYFLN-EKTKSLARASIIGLGALASGWILG 215 (253)
Q Consensus 150 ~~l~~~~~~f~~L~~~~l~~~~-~~-~p~lqLal------sl~a~iYfL~-~K~k~lgRA~ll~~g~L~~G~llG 215 (253)
..+..-++++.++|+.+++..+ ++ ++...+++ ++....+.+. ++.+.+++++++ ++++.+|..++
T Consensus 34 ~~l~~lGall~~~gii~fvA~nW~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~ga~ia 107 (145)
T PF09925_consen 34 RILLYLGALLLGLGIILFVAANWDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLL-LGAVLFGALIA 107 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHH-HHHHHHHHHHH
Confidence 3445555566666666655432 12 22233332 2333444444 444555555554 55555544443
No 130
>PF07784 DUF1622: Protein of unknown function (DUF1622); InterPro: IPR012427 This is a family of 14 highly conserved sequences, from hypothetical proteins expressed by both bacterial and archaeal species.
Probab=27.77 E-value=2.6e+02 Score=21.29 Aligned_cols=29 Identities=31% Similarity=0.454 Sum_probs=24.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhcc
Q 025418 192 EKTKSLARASIIGLGALASGWILGSVVVP 220 (253)
Q Consensus 192 ~K~k~lgRA~ll~~g~L~~G~llGs~l~~ 220 (253)
+-...+|+++++++-.++.+=++.|.+.|
T Consensus 23 ~iR~~lg~~l~lgLEfllaAdIl~Tv~~p 51 (77)
T PF07784_consen 23 RIRLELGRSLLLGLEFLLAADILRTVIAP 51 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 33578999999999999999999998743
No 131
>PRK00907 hypothetical protein; Provisional
Probab=27.60 E-value=1e+02 Score=24.27 Aligned_cols=42 Identities=19% Similarity=0.086 Sum_probs=31.3
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh------------------------hhHHHHHHHHHHHH
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE------------------------RSEESIEAAFEKLL 108 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~------------------------~~~~~IeaAYD~Il 108 (253)
=|||+.|... +++.++-...+++|.||- ...+++++-|..|.
T Consensus 18 fpiKVmG~a~----~~l~~~V~~vv~~h~p~~~~~~i~~r~Ss~GkY~Svtv~i~ats~eQld~iY~~L~ 83 (92)
T PRK00907 18 FELSAMGTAE----RGLETELPRLLAATGVELLQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQALR 83 (92)
T ss_pred CeEEEEEcCc----hhHHHHHHHHHHHhCCCCCcCcEEeccCCCCEEEEEEEEEEECCHHHHHHHHHHHh
Confidence 4999999876 677777777888888741 14778888887763
No 132
>PF06181 DUF989: Protein of unknown function (DUF989); InterPro: IPR010389 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.53 E-value=1.8e+02 Score=27.94 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcc
Q 025418 196 SLARASIIGLGALASGWILGSVVVP 220 (253)
Q Consensus 196 ~lgRA~ll~~g~L~~G~llGs~l~~ 220 (253)
+-+-|+++++|.|++||+++-++--
T Consensus 118 s~~~Ai~isl~~l~~gWlvYd~lCr 142 (300)
T PF06181_consen 118 SPWQAIAISLGSLVLGWLVYDGLCR 142 (300)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466778888888888888887754
No 133
>smart00150 SPEC Spectrin repeats.
Probab=27.39 E-value=1.9e+02 Score=20.54 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=6.7
Q ss_pred CChhhHHHHHHHHHHH
Q 025418 92 GHERSEESIEAAFEKL 107 (253)
Q Consensus 92 ~D~~~~~~IeaAYD~I 107 (253)
.....+..|+...+.+
T Consensus 49 ~~~~~v~~~~~~~~~L 64 (101)
T smart00150 49 AHEERVEALNELGEQL 64 (101)
T ss_pred HhHHHHHHHHHHHHHH
Confidence 3344444444444443
No 134
>KOG4452 consensus Predicted membrane protein [Function unknown]
Probab=26.17 E-value=72 Score=24.47 Aligned_cols=15 Identities=53% Similarity=0.580 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHh
Q 025418 234 ELLTSLVAYFFLFLA 248 (253)
Q Consensus 234 e~i~sl~t~vlLwl~ 248 (253)
|++.|+.+.++|=++
T Consensus 53 ELlIsl~aSvFlGFG 67 (79)
T KOG4452|consen 53 ELLISLTASVFLGFG 67 (79)
T ss_pred HHHHHHHHHHHHhhh
Confidence 444444444433333
No 135
>TIGR01191 ccmC heme exporter protein CcmC. This model describes the cyt c biogenesis protein encoded by ccmC in bacteria. It must be noted an arabidopsis, a tritcum and a piscum plant proteins were recognizable in the clade. Quite likely they are of organellar origin. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes, ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in the heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=26.11 E-value=3.3e+02 Score=23.95 Aligned_cols=59 Identities=20% Similarity=0.090 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH
Q 025418 181 VSLAACIYFLNEKTKSL----ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA 241 (253)
Q Consensus 181 lsl~a~iYfL~~K~k~l----gRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t 241 (253)
+++.+++.+|.+|.+.+ -++..+|+..+.+|++.|++=....= +-.=.|.|-+..++++
T Consensus 29 ~~~~~s~~yL~~~~~~~D~la~~~a~iGf~f~tl~LitGaiWak~~W--G~~W~WDpr~t~~lIl 91 (184)
T TIGR01191 29 MMAIASFIFLVWKHPLSDLAAKAAAPIGAVFTLIALVTGSLWGKPMW--GTWWVWDARLTSVLIL 91 (184)
T ss_pred HHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCChHHHHHHHH
Confidence 33455555555554433 34556777777788888876643211 1111456666665554
No 136
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=25.78 E-value=78 Score=25.88 Aligned_cols=31 Identities=16% Similarity=0.036 Sum_probs=26.4
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHhCCChhhHH
Q 025418 68 LGISPYASEEEIWGSRNFLLEQYTGHERSEE 98 (253)
Q Consensus 68 LGVs~~AS~eEIk~A~~~L~~~y~~D~~~~~ 98 (253)
.|-.++++.|+|.++.++.+++++-+++.+.
T Consensus 8 IGcr~~~~~e~i~~ai~~~L~~~~l~~~si~ 38 (126)
T PRK07027 8 IGCRRGVPAEQIEAAIRAALAQRPLASADVR 38 (126)
T ss_pred eccCCCCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence 5678999999999999999999987766544
No 137
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=25.74 E-value=1.8e+02 Score=27.63 Aligned_cols=46 Identities=26% Similarity=0.304 Sum_probs=34.7
Q ss_pred CCcccccCCCC-CCCHHHHHHHHHHHHHHhC-------CC-----------hhhHHHHHHHHHHH
Q 025418 62 WDPYKRLGISP-YASEEEIWGSRNFLLEQYT-------GH-----------ERSEESIEAAFEKL 107 (253)
Q Consensus 62 ~dPY~~LGVs~-~AS~eEIk~A~~~L~~~y~-------~D-----------~~~~~~IeaAYD~I 107 (253)
.+=++.||+++ +-|.||+++-.++++++-. .| ++-.+++..||+.+
T Consensus 82 ~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l 146 (318)
T PF12725_consen 82 PPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENL 146 (318)
T ss_pred cCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHH
Confidence 34578899998 8999999998887776642 33 23466888888887
No 138
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=25.51 E-value=5e+02 Score=25.76 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 025418 176 AFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSV 217 (253)
Q Consensus 176 ~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~ 217 (253)
.+.+++.+...++.++...|.+.|.+.+ +.++++||++...
T Consensus 172 ~~~~a~~~l~~il~~~~~~~g~~~~~sv-LiGiv~G~v~a~~ 212 (433)
T PRK11412 172 PFGLSVAVMCLVLAMIIFLPQRIARYSL-LVGTIVGWILWAF 212 (433)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHHHH
Confidence 4567777888888899888888877766 5668888887553
No 139
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.86 E-value=44 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHhhhhccc
Q 025418 204 GLGALASGWILGSVVVPM 221 (253)
Q Consensus 204 ~~g~L~~G~llGs~l~~~ 221 (253)
++.+|++|.++|-+++-.
T Consensus 2 ~~i~lvvG~iiG~~~~r~ 19 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRL 19 (128)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456778888888777544
No 140
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=24.48 E-value=52 Score=25.13 Aligned_cols=18 Identities=11% Similarity=0.156 Sum_probs=11.1
Q ss_pred CCChhhHHHHHHHHHHHH
Q 025418 91 TGHERSEESIEAAFEKLL 108 (253)
Q Consensus 91 ~~D~~~~~~IeaAYD~Il 108 (253)
+=+++.+..|.+||..|.
T Consensus 27 Gfs~~~i~~l~~ayr~l~ 44 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILF 44 (83)
T ss_dssp TS-HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 345566677777777774
No 141
>cd03158 penumbra_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), penumbra_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Human Penumbra exhibits growth-suppressive activity in vitro and has been associated with myeloid malignancies.
Probab=24.24 E-value=1.5e+02 Score=23.07 Aligned_cols=30 Identities=3% Similarity=0.028 Sum_probs=22.7
Q ss_pred CCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 74 ASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 74 AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
--.++|++..++.+++|+.| ..+.+++|.|
T Consensus 6 ~v~~~i~~~l~~~i~~y~~~----~~~~~~~d~l 35 (119)
T cd03158 6 QTIDLLEENIRKAIVHYYDD----LDLQNIIDFV 35 (119)
T ss_pred HHHHHHHHHHHHHHHHHccC----HHHHHHHHHH
Confidence 34577888888888888865 2478888887
No 142
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=24.07 E-value=1.3e+02 Score=27.29 Aligned_cols=44 Identities=23% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCcccccCCCCCCCHHHHHHHHHHHH-HHhCCChhhHHHHHHHHHHH
Q 025418 62 WDPYKRLGISPYASEEEIWGSRNFLL-EQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 62 ~dPY~~LGVs~~AS~eEIk~A~~~L~-~~y~~D~~~~~~IeaAYD~I 107 (253)
-||-..|||...- ||=++-|-.|. ++.+.+.++.-+-+.|||+-
T Consensus 37 LdPLtaLGIeArs--d~ERrryAEl~vk~E~~rvekeLA~qrayd~A 81 (200)
T TIGR03759 37 LDPLTALGIEARS--DEERRRYAELWVKQEAQRVEKELAFQRAYDAA 81 (200)
T ss_pred CChhhhhccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999997553 33355555553 44455566666778888876
No 143
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=24.02 E-value=2e+02 Score=23.29 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 025418 199 RASIIGLGALASGWILGSVVVP 220 (253)
Q Consensus 199 RA~ll~~g~L~~G~llGs~l~~ 220 (253)
|.|+++++.++++|++...+..
T Consensus 4 ~~Fi~~~~~~~~~Wi~~N~~~~ 25 (108)
T PF06210_consen 4 WTFIIIFTVFLAVWILLNILAP 25 (108)
T ss_pred HHHHHHHHHHHHHHHHHHhhcc
Confidence 6789999999999999887744
No 144
>cd03151 CD81_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD81_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD81, also referred to as Target for anti-proliferative antigen-1, TAPA-1, is found in virtually all tissues, may be involved in regulation of cell growth and has been described as a member of the CD19/CD21/Leu-13 signal transduction complex identified on B cells (the B-Cell co-receptor).
Probab=24.02 E-value=85 Score=23.34 Aligned_cols=33 Identities=12% Similarity=0.018 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 73 YASEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
+--.++|++.++....+|+.+... .++.++|.|
T Consensus 5 ~~v~~~i~~~l~~~~~~y~~~~~~--~~~~~~d~i 37 (84)
T cd03151 5 DQIIKEVQNFYDSAYQDAVTDTRS--KGTAVLKTF 37 (84)
T ss_pred HHHHHHHHHHHHHHHHHHccCcch--hHHHHHHHH
Confidence 344678888899999999875222 377888887
No 145
>PF08876 DUF1836: Domain of unknown function (DUF1836); InterPro: IPR014975 This group of proteins are functionally uncharacterised.
Probab=23.46 E-value=67 Score=25.92 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHH
Q 025418 71 SPYASEEEIWGSRNFLLEQYTGHERSEESIEAAFEK 106 (253)
Q Consensus 71 s~~AS~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~ 106 (253)
..--|.+||++..+.....+..++ ..++.|||.
T Consensus 72 K~vlsi~dI~~ll~~~~~~~~~~~---~~~~~~Y~~ 104 (105)
T PF08876_consen 72 KQVLSIDDIKKLLDLQFNNYEDDE---ISLEDAYNY 104 (105)
T ss_pred HccCCHHHHHHHHHHHHhcccccC---CCHHHHHhc
Confidence 455789999999999998887777 778888874
No 146
>cd03152 CD9_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), CD9 family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". CD9 is found in virtually all tissues and is potentially involved in developmental processes. It associates with the tetraspanins CD81 and CD63, as well as with some integrin, and has been shown to be involved in a variety of activation, adhesion, and cell motility functions, as well as cell-cell interactions - such as
Probab=23.42 E-value=1e+02 Score=22.63 Aligned_cols=32 Identities=6% Similarity=0.111 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHHHHHH
Q 025418 73 YASEEEIWGSRNFLLEQYTGH-ERSEESIEAAFEKL 107 (253)
Q Consensus 73 ~AS~eEIk~A~~~L~~~y~~D-~~~~~~IeaAYD~I 107 (253)
+--.++|++.++....+|+.+ ... .+.++|.|
T Consensus 5 ~~v~~~i~~~~~~~~~~y~~~~~~~---~~~~~d~i 37 (84)
T cd03152 5 DKVVKEVQTFYRQTYAKYKQSRDPP---LKETLKAI 37 (84)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHH---HHHHHHHH
Confidence 344677888888889999874 332 23477777
No 147
>cd03159 TM4SF9_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF9_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 9 (TM4SF9) or Tetraspanin-5 and related proteins. TM4SF9 is strongly expressed witin the central nervous system, and expression levels appear to correlate with differentiation status of particular neurons, hinting at a role in neuronal maturation.
Probab=23.22 E-value=1.5e+02 Score=23.16 Aligned_cols=29 Identities=10% Similarity=0.132 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 75 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 75 S~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
-.++|++..++.+++|++|+ .+.+|+|.|
T Consensus 7 v~~~i~~~l~~~i~~y~~~~----~~~~~~D~i 35 (121)
T cd03159 7 IKDQLTEFLNNNIRAYRDDI----DLQNLIDFL 35 (121)
T ss_pred HHHHHHHHHHHHHHHhccCH----HHHHHHHHH
Confidence 45778888888888898654 345788887
No 148
>cd03154 TM4SF3_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF3_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 3 (TM4SF3) or D6.1a and related proteins. D6.1a associates with alpha6beta4 integrin and supports cell motility, it has been ascribed a role in tumor progression and metastasis.
Probab=23.17 E-value=1.6e+02 Score=21.98 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 76 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 76 ~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
.++|++.+++.+++|+.| ...++.++|.|
T Consensus 12 ~~~i~~~~~~~i~~y~~~---~~~~~~~~d~l 40 (100)
T cd03154 12 ENELKEKNTKLLSLLGQN---AKSVKKSLEKF 40 (100)
T ss_pred HHHHHHHHHHHHHHcCCC---hHHHHHHHHHH
Confidence 456777778888888765 23467888887
No 149
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=22.82 E-value=5.2e+02 Score=23.51 Aligned_cols=38 Identities=16% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 025418 181 VSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVV 218 (253)
Q Consensus 181 lsl~a~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~l 218 (253)
.++.+.+|+-++...++|+.+..++-+++++.++.-++
T Consensus 129 ~~ls~~g~~tk~Dls~l~~~l~~aligLiiasvvn~Fl 166 (233)
T COG0670 129 GALSLYGYTTKRDLSSLGSFLFMALIGLIIASLVNIFL 166 (233)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566788888999999999999888888877666555
No 150
>PRK10582 cytochrome o ubiquinol oxidase subunit IV; Provisional
Probab=22.63 E-value=4.2e+02 Score=21.53 Aligned_cols=33 Identities=12% Similarity=0.138 Sum_probs=22.3
Q ss_pred HHHHhh--hhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 025418 186 CIYFLN--EKTKSLARASIIGLGALASGWILGSVV 218 (253)
Q Consensus 186 ~iYfL~--~K~k~lgRA~ll~~g~L~~G~llGs~l 218 (253)
.+|||+ ++.+.-+.-..+.|+.+++-.+++|.+
T Consensus 62 L~~FLHl~~~~~~~wn~~al~Ft~~i~~iiv~GSl 96 (109)
T PRK10582 62 LVCFLHMNTKSDEGWNMTAFVFTVLIIAILVVGSI 96 (109)
T ss_pred HHHHhcccCCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 467876 445556667777777777777766655
No 151
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=22.42 E-value=1.2e+02 Score=26.00 Aligned_cols=37 Identities=14% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhCCChh-------------hHHHHHHHHHHHHhHHHh
Q 025418 77 EEIWGSRNFLLEQYTGHER-------------SEESIEAAFEKLLMTSFR 113 (253)
Q Consensus 77 eEIk~A~~~L~~~y~~D~~-------------~~~~IeaAYD~Ilm~~l~ 113 (253)
+..+..|+.+.+.||+|.. ....++.||+.+...-++
T Consensus 18 ~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~r 67 (174)
T COG1076 18 DALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLR 67 (174)
T ss_pred hHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 4455668888999998842 466899999998544333
No 152
>COG1289 Predicted membrane protein [Function unknown]
Probab=22.40 E-value=7e+02 Score=25.77 Aligned_cols=61 Identities=11% Similarity=-0.049 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHhhhhcc
Q 025418 160 AFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEKTKSLARASIIGLGALASGWILGSVVVP 220 (253)
Q Consensus 160 ~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~L~~G~llGs~l~~ 220 (253)
+.+.+|.-+.-..+.|...+.++..++-=.+-....+..+-++.|+.|++++.+++..+.+
T Consensus 21 ~~la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~ 81 (674)
T COG1289 21 ACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQ 81 (674)
T ss_pred HHHHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4555555554455455565665544444344555666667777777777777777766643
No 153
>PF13105 DUF3959: Protein of unknown function (DUF3959)
Probab=22.35 E-value=1.7e+02 Score=26.61 Aligned_cols=29 Identities=31% Similarity=0.411 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhcccc
Q 025418 194 TKSLARASIIGLGALASGWILGSVVVPMI 222 (253)
Q Consensus 194 ~k~lgRA~ll~~g~L~~G~llGs~l~~~i 222 (253)
..++.-+=-+=+--|+.|+++||+++..+
T Consensus 122 m~sLmTs~~~YlllLvgGli~GGLlA~~~ 150 (239)
T PF13105_consen 122 MTSLMTSHYLYLLLLVGGLILGGLLAMLI 150 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333333444888999999987665
No 154
>cd03163 TM4SF8_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This subfamily contaions transmembrane 4 superfamily 8 (TM4SF8) or Tspan-3 and related proteins. Tspan-3 has been reported to form a complex with integrin beta1 and OSP/claudin-11, which may be involved in oligodendrocyte proliferation and migration.
Probab=21.85 E-value=1.7e+02 Score=22.09 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 76 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 76 ~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
.++|++..+..+.+|+.++ .+..++|.|
T Consensus 9 ~~~~~~~~~~~~~~y~~~~----~~~~~~d~i 36 (105)
T cd03163 9 EDELNPSIDKVFNKYNGTN----AESRAVDYL 36 (105)
T ss_pred HHHHHHHHHHHHHHhcCCc----HHHHHHHHH
Confidence 4677777777778887653 345788877
No 155
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=21.77 E-value=2.2e+02 Score=19.63 Aligned_cols=16 Identities=25% Similarity=0.204 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHh
Q 025418 200 ASIIGLGALASGWILG 215 (253)
Q Consensus 200 A~ll~~g~L~~G~llG 215 (253)
.-.+.+.++++|.+.|
T Consensus 31 ~p~~~~~g~llG~~~g 46 (55)
T PF09527_consen 31 SPWFTLIGLLLGIAAG 46 (55)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3444445555555544
No 156
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=21.66 E-value=1.2e+02 Score=24.19 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=30.6
Q ss_pred CcccccCCCCCCCHHHHHHHHHHHHHHhCCCh------------------------hhHHHHHHHHHHH
Q 025418 63 DPYKRLGISPYASEEEIWGSRNFLLEQYTGHE------------------------RSEESIEAAFEKL 107 (253)
Q Consensus 63 dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D~------------------------~~~~~IeaAYD~I 107 (253)
=||++.|....+=.|+|- +++++|.||. ..++++|++|..+
T Consensus 16 F~~KVmG~a~~~l~~~vv----~vvqr~ap~~~~~~~~~k~SSkGnY~svsI~i~A~~~EQ~e~ly~eL 80 (90)
T COG2921 16 FTYKVMGAAGPELEDQVV----EVVQRHAPGDYTPRVSWKPSSKGNYLSVSITIRATNIEQVEALYREL 80 (90)
T ss_pred ceeeehcccchhHHHHHH----HHHHHHCCcccCceeeeccCCCCceEEEEEEEEECCHHHHHHHHHHH
Confidence 499999988776666654 5677777652 1488999999887
No 157
>PF14159 CAAD: CAAD domains of cyanobacterial aminoacyl-tRNA synthetase
Probab=21.65 E-value=2.5e+02 Score=21.88 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=33.1
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHHHHHHHHhhhcC
Q 025418 191 NEKTKSLARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVAYFFLFLACTFF 252 (253)
Q Consensus 191 ~~K~k~lgRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t~vlLwl~ssfL 252 (253)
.++.+...+++++.+++++..++..+++-.+=..+.+++ ..| ++.+. ...|++..+|
T Consensus 12 ~~~~~~~~~~~~~ii~~iv~l~v~~~vl~aIn~iPll~~--llE-lvGlg--yt~wF~~ryL 68 (90)
T PF14159_consen 12 FDKYKRPLLTIGAIIAVIVALWVSAAVLDAINSIPLLPG--LLE-LVGLG--YTGWFVYRYL 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHH--HHH-HHHHH--HHhHHHHHHH
Confidence 456677788888888888888888777732211223443 123 33332 4567666554
No 158
>cd03165 NET-5_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". This sub-family contains proteins similar to human tetraspan NET-5.
Probab=21.39 E-value=1.8e+02 Score=21.42 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.3
Q ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 75 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 75 S~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
-.+.|++..+..+.+|+.+.. ..+..++|.|
T Consensus 7 ~~~~i~~~l~~~~~~y~~~~~--~~~~~~~d~~ 37 (98)
T cd03165 7 VDLTAKDDLKEGLELYGTRNN--RGLTNAWDIT 37 (98)
T ss_pred HHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHH
Confidence 356677777777888876432 2477788887
No 159
>PF14235 DUF4337: Domain of unknown function (DUF4337)
Probab=21.31 E-value=2.3e+02 Score=24.32 Aligned_cols=35 Identities=26% Similarity=0.130 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 025418 176 AFQVAVSLAACIYFLNEKTKSLARASIIGLGALASG 211 (253)
Q Consensus 176 ~lqLalsl~a~iYfL~~K~k~lgRA~ll~~g~L~~G 211 (253)
-||++|++ ++|-.|.+|.-=+.-+++++.+|+++|
T Consensus 119 ~lQIaI~L-asit~Lt~~~~l~~~~~~~g~~G~~~~ 153 (157)
T PF14235_consen 119 LLQIAIVL-ASITALTKKKWLWYASLGLGAVGVAFF 153 (157)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 37777764 445556654433344445544444444
No 160
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=21.16 E-value=3.2e+02 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=21.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHhhhh
Q 025418 149 KDVIFRRLFLFAFMGGWSIMNSAEGGPAFQVAVSLAACIYFLNEK 193 (253)
Q Consensus 149 ~~~l~~~~~~f~~L~~~~l~~~~~~~p~lqLalsl~a~iYfL~~K 193 (253)
.+-|.+|.++|.++ +..+.++++...|+|-.+
T Consensus 58 s~RM~rRm~~~~Gi-------------P~~lG~~~f~~~y~l~~~ 89 (153)
T PF11947_consen 58 SNRMLRRMAVFVGI-------------PTALGVAVFVVFYYLKSR 89 (153)
T ss_pred HHHHHHHHHHHhch-------------HHHHHHHHHHHHHHHHhc
Confidence 35677777665443 566777777778877765
No 161
>PRK14788 lipoprotein signal peptidase; Provisional
Probab=21.04 E-value=1.5e+02 Score=26.54 Aligned_cols=11 Identities=18% Similarity=0.308 Sum_probs=4.8
Q ss_pred HHHHhhhhccc
Q 025418 211 GWILGSVVVPM 221 (253)
Q Consensus 211 G~llGs~l~~~ 221 (253)
|+++||.+.|+
T Consensus 95 ~LIlGGAiGNl 105 (200)
T PRK14788 95 SLILAGAIGNI 105 (200)
T ss_pred HHHHHHHhhhh
Confidence 34444444333
No 162
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.97 E-value=96 Score=21.92 Aligned_cols=18 Identities=28% Similarity=0.349 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 025418 201 SIIGLGALASGWILGSVV 218 (253)
Q Consensus 201 ~ll~~g~L~~G~llGs~l 218 (253)
.++.++++++|.++|.++
T Consensus 21 ~l~il~~f~~G~llg~l~ 38 (68)
T PF06305_consen 21 GLLILIAFLLGALLGWLL 38 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345567778888888866
No 163
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=20.91 E-value=6.1e+02 Score=22.68 Aligned_cols=42 Identities=24% Similarity=0.210 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccCCCcccHHHHHHHHH
Q 025418 198 ARASIIGLGALASGWILGSVVVPMIPTVLIHPTWTLELLTSLVA 241 (253)
Q Consensus 198 gRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~~~s~e~i~sl~t 241 (253)
-|+..+|+..+.+|.+.|+.-+...-+. .=.|.|-.+.|+++
T Consensus 152 ~~~~~~Gf~~ltl~li~G~iWa~~~wg~--~w~wDpK~~~sli~ 193 (243)
T TIGR03144 152 YRTIAIGFPLLTIGIISGAVWANEAWGS--YWSWDPKETWALIT 193 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCCCHHHHHHHHH
Confidence 4778899999999999998775532221 11356666666654
No 164
>PF13042 DUF3902: Protein of unknown function (DUF3902)
Probab=20.91 E-value=5.7e+02 Score=22.39 Aligned_cols=67 Identities=22% Similarity=0.340 Sum_probs=36.8
Q ss_pred hhHHHHHHHHHHHHH-HHHh---ccCCC----CchHHHH-HHHHHHHHHhhhh------hhhHHHHHHHHHHHHHHHHHH
Q 025418 150 DVIFRRLFLFAFMGG-WSIM---NSAEG----GPAFQVA-VSLAACIYFLNEK------TKSLARASIIGLGALASGWIL 214 (253)
Q Consensus 150 ~~l~~~~~~f~~L~~-~~l~---~~~~~----~p~lqLa-lsl~a~iYfL~~K------~k~lgRA~ll~~g~L~~G~ll 214 (253)
+.+.+.. +|++.|. |.++ .+++| +-+..+| +|+++.+=..+++ -|-+-|+...+|..-+.|.++
T Consensus 5 ~~i~iS~-ifa~~G~~~llf~l~~g~~dwil~wvgvlmaylSL~~li~Ly~~~ty~k~~~k~l~kt~~iSF~~avLGiif 83 (161)
T PF13042_consen 5 KNIMISF-IFAVGGMIWLLFNLFMGGGDWILSWVGVLMAYLSLYILIDLYCKNTYDKKFSKVLIKTNVISFNFAVLGIIF 83 (161)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 5666663 3333 34555 3344444 4544444333333 144568888888888888877
Q ss_pred hhh
Q 025418 215 GSV 217 (253)
Q Consensus 215 Gs~ 217 (253)
|-.
T Consensus 84 gI~ 86 (161)
T PF13042_consen 84 GII 86 (161)
T ss_pred HHH
Confidence 753
No 165
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=20.90 E-value=5.9e+02 Score=22.55 Aligned_cols=59 Identities=15% Similarity=0.074 Sum_probs=37.3
Q ss_pred HHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHhhhhcc-ccccccCCCcccHHHHHHHHHHH
Q 025418 183 LAACIYFLNEK-TKSLARASIIGLGALASGWILGSVVVP-MIPTVLIHPTWTLELLTSLVAYF 243 (253)
Q Consensus 183 l~a~iYfL~~K-~k~lgRA~ll~~g~L~~G~llGs~l~~-~i~~~~l~~~~s~e~i~sl~t~v 243 (253)
+..+.+.=++| .+.++++++.=+.|+++|.++.+.+-+ ++| ....+. -...+.+.+.+.
T Consensus 128 ~iyfl~~K~~~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p-~~~s~~-~~~sl~~~i~lw 188 (194)
T PF11833_consen 128 CIYFLNRKERKLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP-GPWSPE-QLVSLFTYILLW 188 (194)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCCHH-HHHHHHHHHHHH
Confidence 45566654554 688999998888888888888877744 444 333322 345555555443
No 166
>TIGR03580 EF_0832 conserved hypothetical protein EF_0832/AHA_3913. Members of this family of relatively rare proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=20.82 E-value=1.1e+02 Score=27.80 Aligned_cols=59 Identities=24% Similarity=0.303 Sum_probs=38.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccccccccCCC-cccHHHHHHHHHHHHHHHhhhcCC
Q 025418 195 KSLARASIIGLGALASGWILGSVVVPMIPTVLIHP-TWTLELLTSLVAYFFLFLACTFFK 253 (253)
Q Consensus 195 k~lgRA~ll~~g~L~~G~llGs~l~~~i~~~~l~~-~~s~e~i~sl~t~vlLwl~ssfLr 253 (253)
..++-.++=+++-++.|=.+=+++..+++...+.. .|+--.=+-+.+.++||+.+.|.|
T Consensus 146 sG~w~Ti~GGla~liMGNavPG~VLGIlIGkgvdesGwnk~tk~m~~~ii~LFvlsgffR 205 (233)
T TIGR03580 146 SGFWGTIFGGLAQLIMGNAVPGVVLGILIGKGVDDSGWTKVTKGMLGAIILLFILSGFFR 205 (233)
T ss_pred cccHHHHHhhHHHHHhcCCCcceeeeeeecccccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 34555555666667776666666666666555443 455455556778889999999877
No 167
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=20.38 E-value=2.3e+02 Score=19.12 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=20.5
Q ss_pred CHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHhHHHhhhhhccc
Q 025418 75 SEEEIWGSRNFLLEQYTGHERSEESIEAAFEKLLMTSFRRRKKEKI 120 (253)
Q Consensus 75 S~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~Ilm~~l~~R~~Gki 120 (253)
|+|+|++|..... .+. ....+.-+.|..= ..-|.+|.+|+.
T Consensus 1 tee~l~~Ai~~v~---~g~-~S~r~AA~~ygVp-~sTL~~r~~g~~ 41 (45)
T PF05225_consen 1 TEEDLQKAIEAVK---NGK-MSIRKAAKKYGVP-RSTLRRRLRGKP 41 (45)
T ss_dssp -HHHHHHHHHHHH---TTS-S-HHHHHHHHT---HHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHH---hCC-CCHHHHHHHHCcC-HHHHHHHHcCCC
Confidence 4566776665544 222 5555555566553 445555555554
No 168
>cd03156 uroplakin_I_like_LEL Tetraspanin, extracellular domain or large extracellular loop (LEL), uroplakin_I_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model spans the extracellular domain between the 3rd and 4th trans-membrane segment. Tetraspanins are involved in diverse processes and their various functions may relate to their ability to act as molecular facilitators. Tetraspanins associate laterally with one another and cluster dynamically with numerous parnter domains in membrane microdomains, forming a network of multimolecular complexes, the "tetraspanin web". Uroplakin Ia and Ib are components of the 16nm protein particles, which are packed hexagonally to form 2D crystals of asymmetric unit membranes, and cover the apical surface of mammalian urothelium, contributing to the urinay bladder's permeability barrier function. Uroplakins Ia and Ib are ma
Probab=20.27 E-value=1.5e+02 Score=22.29 Aligned_cols=29 Identities=10% Similarity=0.240 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHHHH
Q 025418 76 EEEIWGSRNFLLEQYTGHERSEESIEAAFEKL 107 (253)
Q Consensus 76 ~eEIk~A~~~L~~~y~~D~~~~~~IeaAYD~I 107 (253)
.+.|++..++.+.+|..+ ...+..++|.|
T Consensus 10 ~~~~~~~l~~~~~~~~~~---~~~~~~~~d~i 38 (114)
T cd03156 10 EDSFKNLLKNNYGNYNST---GDAITSTWNRV 38 (114)
T ss_pred HHHHHHHHHHHHHhcccc---chHHHHHHHHH
Confidence 455566666666667654 23578888888
No 169
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=20.18 E-value=49 Score=28.98 Aligned_cols=55 Identities=27% Similarity=0.233 Sum_probs=40.9
Q ss_pred cccccccccccCCCCCCCCCCCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHhCCC
Q 025418 36 RSSKVARCAVDTPSGGNMPTFSRIKVWDPYKRLGISPYASEEEIWGSRNFLLEQYTGH 93 (253)
Q Consensus 36 ~~~~~~~~a~~~s~g~~~~~fp~~~~~dPY~~LGVs~~AS~eEIk~A~~~L~~~y~~D 93 (253)
|+...++-|-...|=+ .+-+.+.+|-=+.|||++.+-.|-+++|-++++..|-+|
T Consensus 159 rQ~~vL~~A~~~GYFd---~PR~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~~ 213 (215)
T COG3413 159 RQLEVLRLAYKMGYFD---YPRRVSLKDLAKELGISKSTLSEHLRRAERKLIEAYFDE 213 (215)
T ss_pred HHHHHHHHHHHcCCCC---CCccCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhc
Confidence 4445555555554432 233467788889999999999999999999999988665
No 170
>PF02868 Peptidase_M4_C: Thermolysin metallopeptidase, alpha-helical domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification. ; InterPro: IPR001570 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases that belong to the MEROPS peptidase family M4 (thermolysin family, clan MA(E)). The protein fold of the peptidase domain of thermolysin, is the type example for members of the clan MA. The thermolysin family is composed only of secreted eubacterial endopeptidases. The zinc-binding residues are H-142, H-146 and E-166, with E-143 acting as the catalytic residue. Thermolysin also contains 4 calcium-binding sites, which contribute to its unusual thermostability. The family also includes enzymes from a number of pathogens, including Legionella and Listeria, and the protein pseudolysin, all with a substrate specificity for an aromatic residue in the P1' position. Three-dimensional structure analysis has shown that the enzymes undergo a hinge-bend motion during catalysis. Pseudolysin has a broader specificity, acting on large molecules such as elastin and collagen, possibly due to its wider active site cleft []. This entry represents a domain found in the C-terminal of the peptidase M4 family members.; GO: 0004222 metalloendopeptidase activity; PDB: 3NQX_A 3NQZ_B 3NQY_B 1U4G_A 1EZM_A 3DBK_A 1LND_E 3T2I_E 3FOR_A 3FGD_A ....
Probab=20.08 E-value=1.8e+02 Score=24.86 Aligned_cols=39 Identities=5% Similarity=0.129 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHHh-CCChhhHHHHHHHHHHH
Q 025418 69 GISPYASEEEIWGSRNFLLEQY-TGHERSEESIEAAFEKL 107 (253)
Q Consensus 69 GVs~~AS~eEIk~A~~~L~~~y-~~D~~~~~~IeaAYD~I 107 (253)
-++++++|.+-+.+--+-+++. +.+....+.|.+|++.+
T Consensus 123 ~l~~~s~F~~~~~~~i~aA~~l~g~~s~~~~aV~~Aw~aV 162 (164)
T PF02868_consen 123 YLTPNSTFSDARRATIQAAKDLYGANSAEVKAVKDAWDAV 162 (164)
T ss_dssp TS-TT-BHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred hcCCCCCHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHc
Confidence 4688999999999887777775 55556788999999875
Done!