BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025419
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W56|B Chain B, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 132 AEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWR 191
A +L A T + + +D +Y D GGF +E++I C + EW
Sbjct: 27 AHLLSSEALTTSRYLVFNFRDKSYSA------DEGGFHPVEMAI--C-----QTSTGEWS 73
Query: 192 DEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSG 229
E + TD YM + PEL+ L F ++ V AY G
Sbjct: 74 IE-YITDFAYMGNYYPELERNLDFDFRVGQFFV-AYRG 109
>pdb|2W56|A Chain A, Structure Of The Hypothetical Protein Vc0508 From Vibrio
Cholerae Vsp-Ii Pathogenicity Island
Length = 147
Score = 34.7 bits (78), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)
Query: 132 AEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWR 191
A +L A T + + +D +Y D GGF +E++I C EW
Sbjct: 27 AHLLSSEALTTSRYLVFNFRDKSYSA------DEGGFHPVEMAI--CQTS-----TGEWS 73
Query: 192 DEDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSG 229
E + TD YM + PEL+ L F ++ V AY G
Sbjct: 74 IE-YITDFAYMGNYYPELERNLDFDFRVGQFFV-AYRG 109
>pdb|2IU7|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IU7|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMFRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IV1|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IV1|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMYQFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IVQ|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVQ|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 33.9 bits (76), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMYKFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IVG|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVG|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 33.9 bits (76), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IUO|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IUO|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 33.9 bits (76), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|2IVB|A Chain A, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|B Chain B, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|C Chain C, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|D Chain D, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|E Chain E, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|F Chain F, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|G Chain G, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|H Chain H, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|I Chain I, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
pdb|2IVB|J Chain J, Site Directed Mutagenesis Of Key Residues Involved In The
Catalytic Mechanism Of Cyanase
Length = 156
Score = 33.9 bits (76), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP + F EML+V TL L + D
Sbjct: 83 CIDDRIPTDPTMYRFYEMLQVYGTTLKALVHEKFGDG 119
>pdb|1OZ9|A Chain A, Crystal Structure Of Aq_1354, A Hypothetical Protein From
Aquifex Aeolicus
Length = 150
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 167 GFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
G ++ELS+ +++ IR+ NK +R +D TDVL
Sbjct: 37 GLNNVELSVYITDDQEIRELNKTYRKKDKPTDVL 70
>pdb|1DW9|A Chain A, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|B Chain B, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|C Chain C, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|D Chain D, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|E Chain E, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|F Chain F, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|G Chain G, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|H Chain H, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|I Chain I, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DW9|J Chain J, Structure Of Cyanase Reveals That A Novel Dimeric And
Decameric Arrangement Of Subunits Is Required For
Formation Of The Enzyme Active Site
pdb|1DWK|A Chain A, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|B Chain B, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|C Chain C, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|D Chain D, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|E Chain E, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|F Chain F, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|G Chain G, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|H Chain H, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|I Chain I, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
pdb|1DWK|J Chain J, Structure Of Cyanase With The Di-Anion Oxalate Bound At
The Enzyme Active Site
Length = 156
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 117 CIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDS 153
CI+D +P DP F E L+V TL L + D
Sbjct: 83 CIDDRIPTDPTXYRFYEXLQVYGTTLKALVHEKFGDG 119
>pdb|1H31|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|C Chain C, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|E Chain E, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H31|G Chain G, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H32|A Chain A, Reduced Soxax Complex From Rhodovulum Sulfidophilum
pdb|1H33|A Chain A, Oxidised Soxax Complex From Rhodovulum Sulfidophilum
pdb|2OZ1|A Chain A, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|C Chain C, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|E Chain E, The Soxax Complex Of Rhodovulum Sulfidophilum
pdb|2OZ1|G Chain G, The Soxax Complex Of Rhodovulum Sulfidophilum
Length = 261
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 123 PDDPEVLNFAEMLRVNAPTLMKLA--FDSLKDS-TYKTRDTAIEDAGGFES 170
PDDP V+N + APT LA FD ++ T++T DT + FE+
Sbjct: 2 PDDPLVINGEIEIVTRAPTPAHLADRFDEIRSGWTFRTDDTQALEMDDFEN 52
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,332,425
Number of Sequences: 62578
Number of extensions: 233431
Number of successful extensions: 487
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 13
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)