BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025419
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2ILG1|YBEY_ANADE Endoribonuclease YbeY OS=Anaeromyxobacter dehalogenans (strain
2CP-C) GN=ybeY PE=3 SV=1
Length = 193
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 167 GFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
G E ELSIL + IR N+EWR +D ATDVL
Sbjct: 31 GREDAELSILLVTDRRIRTLNREWRQKDQATDVL 64
>sp|A7HDW6|YBEY_ANADF Endoribonuclease YbeY OS=Anaeromyxobacter sp. (strain Fw109-5)
GN=ybeY PE=3 SV=1
Length = 192
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 167 GFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLC 218
G E+SIL + IR N+EWR +D ATDVL P PL+ +
Sbjct: 31 GRADAEISILLVGDRRIRALNREWRGKDAATDVLSFPLSEPPGSGPLLGDVV 82
>sp|Q8UID9|YBEY_AGRT5 Endoribonuclease YbeY OS=Agrobacterium tumefaciens (strain C58 /
ATCC 33970) GN=ybeY PE=3 SV=2
Length = 168
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 25/30 (83%)
Query: 171 IELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ELS++F ++E IR+ N EWRD+D AT+VL
Sbjct: 49 VELSLVFTDDENIREINAEWRDKDKATNVL 78
>sp|B8DE46|YBEY_LISMH Endoribonuclease YbeY OS=Listeria monocytogenes serotype 4a (strain
HCC23) GN=ybeY PE=3 SV=1
Length = 161
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ ELS+ F NE IR+ N+E+RD+D ATDV+
Sbjct: 38 QGTELSLTFTTNEGIREINREYRDKDQATDVI 69
>sp|Q8Y747|YBEY_LISMO Endoribonuclease YbeY OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=ybeY PE=3 SV=1
Length = 161
Score = 39.7 bits (91), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ ELS+ F NE IR+ N+E+RD+D ATDV+
Sbjct: 38 QGTELSLTFTTNEGIREINREYRDKDQATDVI 69
>sp|Q71ZK5|YBEY_LISMF Endoribonuclease YbeY OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=ybeY PE=3 SV=1
Length = 161
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ ELS+ F NE IR+ N+E+RD+D ATDV+
Sbjct: 38 QGTELSLTFTTNEGIREINREYRDKDQATDVI 69
>sp|C1KVB2|YBEY_LISMC Endoribonuclease YbeY OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=ybeY PE=3 SV=1
Length = 161
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ ELS+ F NE IR+ N+E+RD+D ATDV+
Sbjct: 38 QGTELSLTFTTNEGIREINREYRDKDQATDVI 69
>sp|B2V7H6|YBEY_SULSY Endoribonuclease YbeY OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=ybeY PE=3 SV=1
Length = 152
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 167 GFESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQ 204
++E+SI +NE IR+ NKEWR +D TDVL Q
Sbjct: 38 NLNNVEISITLTDNERIREINKEWRGKDKPTDVLSFPQ 75
>sp|A0AIR6|YBEY_LISW6 Endoribonuclease YbeY OS=Listeria welshimeri serovar 6b (strain
ATCC 35897 / DSM 20650 / SLCC5334) GN=ybeY PE=3 SV=1
Length = 161
Score = 38.9 bits (89), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E ELS+ F NE IR+ N+E+R++D ATDV+
Sbjct: 38 EGTELSLTFTTNEGIREINREYRNKDQATDVI 69
>sp|A9VHT0|YBEY_BACWK Endoribonuclease YbeY OS=Bacillus weihenstephanensis (strain KBAB4)
GN=ybeY PE=3 SV=1
Length = 156
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL-------------YMSQHVPELKLPLVF 215
E ELS+ F +NE IR+ N+++RD+D TDV+ + +P + L+
Sbjct: 37 EGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLII 96
Query: 216 SLCHAKYCVSAYS 228
S+ AK Y
Sbjct: 97 SIPRAKEQAEEYG 109
>sp|Q73NB3|YBEY_TREDE Endoribonuclease YbeY OS=Treponema denticola (strain ATCC 35405 /
CIP 103919 / DSM 14222) GN=ybeY PE=3 SV=1
Length = 155
Score = 38.1 bits (87), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQ 204
++S+LFC++ FI+ NK++RD D TDVL Q
Sbjct: 39 DISLLFCDDAFIQNLNKQYRDIDSPTDVLSFEQ 71
>sp|B2IIK7|YBEY_BEII9 Endoribonuclease YbeY OS=Beijerinckia indica subsp. indica (strain
ATCC 9039 / DSM 1715 / NCIB 8712) GN=ybeY PE=3 SV=1
Length = 205
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E+S+LFC++ FIR N +WR D T+VL
Sbjct: 51 EVSLLFCDDAFIRGLNHQWRGLDKPTNVL 79
>sp|Q97JI7|YBEY_CLOAB Endoribonuclease YbeY OS=Clostridium acetobutylicum (strain ATCC
824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787)
GN=ybeY PE=3 SV=1
Length = 166
Score = 37.7 bits (86), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 36/53 (67%)
Query: 148 DSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
++L+++ + D A+++ G S E+S++F +NE IR+ N+E R+ D TDVL
Sbjct: 15 ENLQNTIREVIDYALKEEGMKISYEVSVIFVDNETIREINRENREVDKVTDVL 67
>sp|B7HCS7|YBEY_BACC4 Endoribonuclease YbeY OS=Bacillus cereus (strain B4264) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.7 bits (86), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 162 IEDAGGFESIE----LSILFCNNEFIRKHNKEWRDEDHATDVL-------------YMSQ 204
+E A ESIE +S+ F +NE IR+ N+++RD+D TDV+ +
Sbjct: 26 LEKAAQMESIEDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGA 85
Query: 205 HVPELKLPLVFSLCHAKYCVSAYS 228
+P + L+ S+ AK Y
Sbjct: 86 EMPRMLGDLIISIPRAKEQAEEYG 109
>sp|B2RKT6|YBEY_PORG3 Endoribonuclease YbeY OS=Porphyromonas gingivalis (strain ATCC
33277 / DSM 20709 / JCM 12257) GN=ybeY PE=3 SV=1
Length = 151
Score = 37.4 bits (85), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E+S LFC++E+I K N+E+ D D+ TD++
Sbjct: 38 EISYLFCDDEYILKANQEFLDHDYYTDII 66
>sp|Q7MWS9|YBEY_PORGI Endoribonuclease YbeY OS=Porphyromonas gingivalis (strain ATCC
BAA-308 / W83) GN=ybeY PE=3 SV=1
Length = 151
Score = 37.4 bits (85), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E+S LFC++E+I K N+E+ D D+ TD++
Sbjct: 38 EISYLFCDDEYILKANQEFLDHDYYTDII 66
>sp|Q730N3|YBEY_BACC1 Endoribonuclease YbeY OS=Bacillus cereus (strain ATCC 10987)
GN=ybeY PE=3 SV=1
Length = 156
Score = 37.4 bits (85), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL-------------YMSQHVPELKLPLVF 215
+ ELS+ F +NE IR+ N+++RD+D TDV+ + +P + L+
Sbjct: 37 DGAELSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGAEMPRMLGDLII 96
Query: 216 SLCHAKYCVSAYS 228
S+ AK Y
Sbjct: 97 SIPRAKEQAEEYG 109
>sp|B8ETG9|YBEY_METSB Endoribonuclease YbeY OS=Methylocella silvestris (strain BL2 / DSM
15510 / NCIMB 13906) GN=ybeY PE=3 SV=1
Length = 176
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFSLCHA 220
E+SI+FC++ FI N++WR D T+VL P P++ + A
Sbjct: 44 EISIVFCDDAFIADLNRKWRGVDKPTNVLSFPSGGPIAVTPVLGDIVIA 92
>sp|Q92BP5|YBEY_LISIN Endoribonuclease YbeY OS=Listeria innocua serovar 6a (strain CLIP
11262) GN=ybeY PE=3 SV=1
Length = 161
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E ELS+ F NE I++ N+E+R++D ATDV+
Sbjct: 38 EGTELSLTFTTNEGIQEINREYRNKDQATDVI 69
>sp|Q38XA4|YBEY_LACSS Endoribonuclease YbeY OS=Lactobacillus sakei subsp. sakei (strain
23K) GN=ybeY PE=3 SV=1
Length = 158
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E E+S+ F NE IR+ N+E+R+ D ATDV+
Sbjct: 35 EDTEMSVTFVTNERIRQINQEYRNTDRATDVI 66
>sp|Q6HDL8|YBEY_BACHK Endoribonuclease YbeY OS=Bacillus thuringiensis subsp. konkukian
(strain 97-27) GN=ybeY PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|Q634N8|YBEY_BACCZ Endoribonuclease YbeY OS=Bacillus cereus (strain ZK / E33L) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|B9IY70|YBEY_BACCQ Endoribonuclease YbeY OS=Bacillus cereus (strain Q1) GN=ybeY PE=3
SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|B7HPK2|YBEY_BACC7 Endoribonuclease YbeY OS=Bacillus cereus (strain AH187) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|C1ESJ7|YBEY_BACC3 Endoribonuclease YbeY OS=Bacillus cereus (strain 03BB102) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|B7JN28|YBEY_BACC0 Endoribonuclease YbeY OS=Bacillus cereus (strain AH820) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|Q81LT4|YBEY_BACAN Endoribonuclease YbeY OS=Bacillus anthracis GN=ybeY PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|A0RIS3|YBEY_BACAH Endoribonuclease YbeY OS=Bacillus thuringiensis (strain Al Hakam)
GN=ybeY PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|C3L5Q6|YBEY_BACAC Endoribonuclease YbeY OS=Bacillus anthracis (strain CDC 684 / NRRL
3495) GN=ybeY PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|C3P8K9|YBEY_BACAA Endoribonuclease YbeY OS=Bacillus anthracis (strain A0248) GN=ybeY
PE=3 SV=1
Length = 156
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F +NE IR+ N+++RD+D TDV+
Sbjct: 40 ELSVTFVDNERIREINRDYRDKDQPTDVI 68
>sp|B1YL70|YBEY_EXIS2 Endoribonuclease YbeY OS=Exiguobacterium sibiricum (strain DSM
17290 / JCM 13490 / 255-15) GN=ybeY PE=3 SV=1
Length = 158
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS+ F N+ I++ N+EWR +D ATDV+
Sbjct: 38 ELSVTFVTNDEIQQINREWRGKDQATDVI 66
>sp|Q92SI5|YBEY_RHIME Endoribonuclease YbeY OS=Rhizobium meliloti (strain 1021) GN=ybeY
PE=3 SV=1
Length = 168
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
++ ELS++F +++ IR N EWR +D AT+VL
Sbjct: 47 QAAELSLVFTDDQSIRAINAEWRGQDKATNVL 78
>sp|B5RQN9|YBEY_BORRA Endoribonuclease YbeY OS=Borrelia recurrentis (strain A1) GN=ybeY
PE=3 SV=1
Length = 148
Score = 36.6 bits (83), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS++ CNNE+I+K N E+R + TDVL
Sbjct: 38 ELSVILCNNEYIQKLNGEFRQKPEPTDVL 66
>sp|B7IYF4|YBEY_BACC2 Endoribonuclease YbeY OS=Bacillus cereus (strain G9842) GN=ybeY
PE=3 SV=1
Length = 156
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 162 IEDAGGFESIE----LSILFCNNEFIRKHNKEWRDEDHATDVL-------------YMSQ 204
+E A E+IE +S+ F +NE IR+ N+++RD+D TDV+ +
Sbjct: 26 LEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGA 85
Query: 205 HVPELKLPLVFSLCHAKYCVSAYS 228
+P + L+ S+ AK Y
Sbjct: 86 EMPRMLGDLIISIPRAKEQAEEYG 109
>sp|Q1D375|YBEY_MYXXD Endoribonuclease YbeY OS=Myxococcus xanthus (strain DK 1622)
GN=ybeY PE=3 SV=1
Length = 294
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 168 FESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ELS+ ++ IR+ N+ WR +D ATDVL
Sbjct: 164 LSGVELSLSLVDDRAIRRLNRTWRKKDKATDVL 196
>sp|Q812T1|YBEY_BACCR Endoribonuclease YbeY OS=Bacillus cereus (strain ATCC 14579 / DSM
31) GN=ybeY PE=3 SV=1
Length = 156
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 162 IEDAGGFESIE----LSILFCNNEFIRKHNKEWRDEDHATDVL-------------YMSQ 204
+E A E+IE +S+ F +NE IR+ N+++RD+D TDV+ +
Sbjct: 26 LEKAAQMENIEDGAEVSVTFVDNERIREINRDYRDKDQPTDVISFAMEEMGEGEMEIVGA 85
Query: 205 HVPELKLPLVFSLCHAKYCVSAYS 228
+P + L+ S+ AK Y
Sbjct: 86 EMPRMLGDLIISIPRAKEQAEEYG 109
>sp|Q65H70|YBEY_BACLD Endoribonuclease YbeY OS=Bacillus licheniformis (strain DSM 13 /
ATCC 14580) GN=ybeY PE=3 SV=1
Length = 158
Score = 36.2 bits (82), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 161 AIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
A + G + E+S+ NNE I+K NKE+R +D+ TDV+
Sbjct: 29 AAAEEGVADGAEVSVTIVNNEEIQKINKEYRGKDYPTDVI 68
>sp|B2TM06|YBEY_CLOBB Endoribonuclease YbeY OS=Clostridium botulinum (strain Eklund 17B /
Type B) GN=ybeY PE=3 SV=1
Length = 166
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 148 DSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
D + K + A+++ G S E+S+LF +NE IR+ N E R+ D ATDVL
Sbjct: 15 DEFTNHLEKVIEFALKEEGVNISSEISLLFVDNEEIREINNETRNIDRATDVL 67
>sp|B5RKV9|YBEY_BORDL Endoribonuclease YbeY OS=Borrelia duttonii (strain Ly) GN=ybeY PE=3
SV=1
Length = 148
Score = 36.2 bits (82), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS++ CNNE+I+K N E+R + TDVL
Sbjct: 38 ELSVILCNNEYIQKLNGEFRQKPEPTDVL 66
>sp|A8IG05|YBEY_AZOC5 Endoribonuclease YbeY OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=ybeY PE=3 SV=1
Length = 159
Score = 36.2 bits (82), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL-YMSQHVPELKLP 212
E E+SI ++ IR N+EWRD+D T+VL + + +PE +P
Sbjct: 39 EGAEMSITLTDDARIRVLNREWRDKDKPTNVLSFPAAELPEGVVP 83
>sp|Q7VE08|YBEY_PROMA Endoribonuclease YbeY OS=Prochlorococcus marinus (strain SARG /
CCMP1375 / SS120) GN=ybeY PE=3 SV=1
Length = 195
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 173 LSILFCNNEFIRKHNKEWRDEDHATDVL 200
+ +LF N+ IR+ NKEWR +D +TDVL
Sbjct: 76 MGLLFTNDLSIRQMNKEWRKKDESTDVL 103
>sp|B2G6Z1|YBEY_LACRJ Endoribonuclease YbeY OS=Lactobacillus reuteri (strain JCM 1112)
GN=ybeY PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E+ E+S+ F NN I+K N ++R+ D ATDVL
Sbjct: 36 ENTEMSLTFVNNPEIKKLNAQYRNVDRATDVL 67
>sp|A5VJH6|YBEY_LACRD Endoribonuclease YbeY OS=Lactobacillus reuteri (strain DSM 20016)
GN=ybeY PE=3 SV=1
Length = 159
Score = 35.8 bits (81), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
E+ E+S+ F NN I+K N ++R+ D ATDVL
Sbjct: 36 ENTEMSLTFVNNPEIKKLNAQYRNVDRATDVL 67
>sp|A1QYL0|YBEY_BORT9 Endoribonuclease YbeY OS=Borrelia turicatae (strain 91E135) GN=ybeY
PE=3 SV=1
Length = 148
Score = 35.8 bits (81), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 22/29 (75%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS++ CNNE+I+K N ++R + TDVL
Sbjct: 38 ELSVILCNNEYIQKLNSQFRQKSEPTDVL 66
>sp|C3MF10|YBEY_RHISN Endoribonuclease YbeY OS=Rhizobium sp. (strain NGR234) GN=ybeY PE=3
SV=1
Length = 173
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 172 ELSILFCNNEFIRKHNKEWRDEDHATDVL 200
ELS++F +++ IR+ N EWR++D T+VL
Sbjct: 50 ELSLVFTDDQSIREINAEWRNQDKPTNVL 78
>sp|B0TAE8|YBEY_HELMI Endoribonuclease YbeY OS=Heliobacterium modesticaldum (strain ATCC
51547 / Ice1) GN=ybeY PE=3 SV=1
Length = 166
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 11/59 (18%)
Query: 142 LMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
L +LAF L++ Y DT E+S++ N+E IR+ N E+R+ D TDVL
Sbjct: 26 LEQLAFACLEEVGYPLEDT-----------EISLVLTNDEKIRRLNAEYRNIDQPTDVL 73
>sp|B0K706|YBEY_THEPX Endoribonuclease YbeY OS=Thermoanaerobacter sp. (strain X514)
GN=ybeY PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 149 SLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+L++ K T +E +++E+S+ F +NE IRK NK +R D TDVL
Sbjct: 16 NLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVL 67
>sp|B0KA56|YBEY_THEP3 Endoribonuclease YbeY OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=ybeY PE=3 SV=1
Length = 159
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 149 SLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
+L++ K T +E +++E+S+ F +NE IRK NK +R D TDVL
Sbjct: 16 NLEELVEKVIKTVLEVEEVIDNVEVSVSFVDNEEIRKLNKYYRGIDKPTDVL 67
>sp|Q5KX10|YBEY_GEOKA Endoribonuclease YbeY OS=Geobacillus kaustophilus (strain HTA426)
GN=ybeY PE=3 SV=1
Length = 156
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMS--------QHVPELKLP-----LVF 215
+ E+S+ F +NE IR N+++R +D TDVL + H+ +P +V
Sbjct: 37 DGAEVSVTFVDNERIRAMNRDYRGKDAPTDVLSFALEEEGEEEVHIVGADMPPVLGDIVI 96
Query: 216 SLCHAKYCVSAYS 228
S+ AK +AY
Sbjct: 97 SIPKAKEQAAAYG 109
>sp|A4XKI9|YBEY_CALS8 Endoribonuclease YbeY OS=Caldicellulosiruptor saccharolyticus
(strain ATCC 43494 / DSM 8903) GN=ybeY PE=3 SV=1
Length = 158
Score = 35.4 bits (80), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
Query: 150 LKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDEDHATDVL 200
++DS T ++D E+ E+S++ +N+FI++ NK +R D TDVL
Sbjct: 22 IEDSVLNTLKIFMDD----ENYEISVMIVDNQFIKELNKHYRSIDKETDVL 68
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,276,415
Number of Sequences: 539616
Number of extensions: 3526221
Number of successful extensions: 10033
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 9875
Number of HSP's gapped (non-prelim): 204
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)