Query 025419
Match_columns 253
No_of_seqs 215 out of 1188
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 05:36:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025419.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025419hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02887 hydrolase family prot 100.0 6.3E-48 1.4E-52 379.4 14.7 194 38-238 29-234 (580)
2 COG0319 Predicted metal-depend 99.9 1.9E-23 4.2E-28 177.1 10.7 61 169-229 36-102 (153)
3 PRK13963 unkown domain/putativ 99.9 5E-23 1.1E-27 187.1 11.0 101 106-237 108-218 (258)
4 PF02130 UPF0054: Uncharacteri 99.9 3.5E-22 7.6E-27 166.3 8.0 59 171-229 35-102 (145)
5 PRK00016 metal-binding heat sh 99.9 1.3E-21 2.8E-26 165.7 11.0 72 169-240 36-119 (159)
6 TIGR00043 metalloprotein, YbeY 99.9 4.5E-22 9.7E-27 159.8 6.9 70 171-240 1-79 (110)
7 PLN02887 hydrolase family prot 96.9 0.00049 1.1E-08 69.4 2.1 74 19-104 1-78 (580)
8 cd06399 PB1_P40 The PB1 domain 38.6 45 0.00098 27.1 3.6 70 114-204 16-85 (92)
9 COG5639 Uncharacterized conser 33.8 15 0.00033 28.9 0.2 17 85-101 54-70 (77)
10 COG5149 TOA1 Transcription ini 26.6 44 0.00094 31.8 2.0 29 178-206 30-58 (293)
No 1
>PLN02887 hydrolase family protein
Probab=100.00 E-value=6.3e-48 Score=379.36 Aligned_cols=194 Identities=51% Similarity=0.817 Sum_probs=166.4
Q ss_pred hhcccCCCCcccccCCCCCCC----CCCCCCcccccccccccccccccccchhhHhhhhhccccccCCC-ccccccceEE
Q 025419 38 AISFLNSPSISFKTHRLDASS----PSKSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYRKVRRRV-AKSKQKELEL 112 (253)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~a~~r~~rk~r~~~-~~~~~~~l~l 112 (253)
+..++.++++||.++.+-..+ +++.++ |.+|||.+++++.| +|+||++|||||.|+|| |++|+.+++|
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (580)
T PLN02887 29 ARLLLQPSSLSFSPKTSNFNRLDVTSTEFSS-FRKGFHAFRSTKPR------GRVWAAHRGYRKIRRRAPPPKKEQELEL 101 (580)
T ss_pred hhhhcCccccccCCCCCCCccccCCCCchhh-HHHHHHHHhhcCcc------ccchhhhccCccccCCCCCCCcccceee
Confidence 334455556666553332211 123333 99999999999988 89999999999999985 7789999999
Q ss_pred EEEEeecCCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHHhC
Q 025419 113 NVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD 192 (253)
Q Consensus 113 ~vqi~vE~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eYRg 192 (253)
.|+|+||+++|+|+++.+++|+||+|+|+||+.|++++++|+|||||+.|++.++....||+|+||||++|++||++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~elsv~~~~d~~i~~LN~~yr~ 181 (580)
T PLN02887 102 SVSICIEEDLPDDPEILNIAELLRLNVPMAMKLAFDGLKDSKYKTRDTDISDVGGYDSVELSVMLCNDDFIRKLNKEWRG 181 (580)
T ss_pred eEEEeeccCCCCCHHHHHHHHHHhhccHHHHHHHhhhcccccccccchHHHhcCCCCceEEEEEEECHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcEeeecCCCC------CCcccEEEeHHHHHHHHHhhCCCC-ccchhhh
Q 025419 193 EDHATDVLYMSQHVP------ELKLPLVFSLCHAKYCVSAYSGVW-GGVEKIV 238 (253)
Q Consensus 193 kD~pTDVLSFP~~ep------~lLGDIvIs~e~v~rQA~eY~~~~-~~~~~i~ 238 (253)
||+||||||||++++ .+|||||||+++|++||++|++.+ .++-.+.
T Consensus 182 ~d~~TDVLSF~~~~~~~~~~~~~lGDIvIs~~~~~~qA~e~~~s~~~el~~l~ 234 (580)
T PLN02887 182 EDHATDVLSMSQHVPGLKLPVLMLGDIVISVETAARQAEERGHTLLDEIRILV 234 (580)
T ss_pred CCCCCcEEeccCcCCCCCCCCccceEEEEeHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999998642 369999999999999999999543 3444333
No 2
>COG0319 Predicted metal-dependent hydrolase [General function prediction only]
Probab=99.90 E-value=1.9e-23 Score=177.14 Aligned_cols=61 Identities=28% Similarity=0.325 Sum_probs=56.9
Q ss_pred ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC------CCcccEEEeHHHHHHHHHhhCC
Q 025419 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP------ELKLPLVFSLCHAKYCVSAYSG 229 (253)
Q Consensus 169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep------~lLGDIvIs~e~v~rQA~eY~~ 229 (253)
...||||+||||++||+||++|||||+||||||||++++ .+|||||||.++|++||++||+
T Consensus 36 ~~~elsv~~vdd~ei~eLN~~yR~kD~pTDVLSFp~~e~~~~~~~~~LGDIvI~~~~~~~qA~e~g~ 102 (153)
T COG0319 36 STAELSVVLVDDAEIRELNLEYRGKDKPTDVLSFPYNEPGEAGEPPLLGDIVICPEVAEEQAKEQGH 102 (153)
T ss_pred CCceEEEEEeCHHHHHHHHHHHcCCCCCCceEEecCCCCCCCCCCccceeeEEcHHHHHHHHHHhCC
Confidence 468999999999999999999999999999999999753 3799999999999999999885
No 3
>PRK13963 unkown domain/putative metalloprotease fusion protein; Provisional
Probab=99.89 E-value=5e-23 Score=187.12 Aligned_cols=101 Identities=21% Similarity=0.227 Sum_probs=81.8
Q ss_pred cccceEEEEEEeec------CCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeC
Q 025419 106 KQKELELNVSICIE------DELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCN 179 (253)
Q Consensus 106 ~~~~l~l~vqi~vE------~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVD 179 (253)
..+.++|+||+..+ ..||+...+..|++ .++. ...||+|+|||
T Consensus 108 ~~~~l~l~vq~~~~~~~~~~~~lp~~~~i~~~i~-------~al~------------------------~~~eLsv~fVd 156 (258)
T PRK13963 108 REPELDLTVQYGDEIGGAQRKALPKRKLIAEWIE-------PALF------------------------ADAQLTVRFVG 156 (258)
T ss_pred ccCceEEEEEeecccccccccCCCCHHHHHHHHH-------HHhC------------------------cCceEEEEEEC
Confidence 45568889998864 25888888888888 4431 24799999999
Q ss_pred HHHHHHHHHHHhCCCCCCcEeeecCCCC---CCcccEEEeHHHHHHHHHhhCC-CCccchhh
Q 025419 180 NEFIRKHNKEWRDEDHATDVLYMSQHVP---ELKLPLVFSLCHAKYCVSAYSG-VWGGVEKI 237 (253)
Q Consensus 180 d~eIr~LN~eYRgkD~pTDVLSFP~~ep---~lLGDIvIs~e~v~rQA~eY~~-~~~~~~~i 237 (253)
+++|++||++|||||+||||||||++++ .+|||||||.++|++||++|++ ++.++..+
T Consensus 157 deeir~LN~~YR~kD~pTDVLSFp~~e~~~~~~LGDIvIc~e~v~rqA~e~~~sl~~El~~L 218 (258)
T PRK13963 157 EEEGRTLNRGYRGKDYATNVLTFAYAEEPDGPVIGDLVLCCPVVEKEAREQGKPLEAHYAHL 218 (258)
T ss_pred HHHHHHHHHHHcCCCCCCeEEeecCCCCCCCCcceeEEEEHHHHHHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999753 4799999999999999999984 33344333
No 4
>PF02130 UPF0054: Uncharacterized protein family UPF0054; InterPro: IPR002036 These, as yet, uncharacterised proteins are of 17 to 21 kDa. They contain a conserved region with three histidines at the C terminus. The protein family is represented by a single member sequence only in nearly every bacterium. The crystal structure of the protein from the hyperthermophilic bacteria Aquifex aeolicus has been determined. The overall fold consists of one central alpha-helix surrounded by a four-stranded beta-sheet and four other alpha-helices. Structure-based homology analysis reveals a good resemblance to the metal-dependent proteinases such as collagenases and gelatinases. However, experimental tests for collagenase and gelatinase-type function show no detectable activity under standard assay conditions [].; GO: 0046872 metal ion binding; PDB: 1TVI_A 1OZ9_A 1XM5_A 1XAX_A.
Probab=99.86 E-value=3.5e-22 Score=166.26 Aligned_cols=59 Identities=36% Similarity=0.451 Sum_probs=49.8
Q ss_pred eeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCCC---------CcccEEEeHHHHHHHHHhhCC
Q 025419 171 IELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPE---------LKLPLVFSLCHAKYCVSAYSG 229 (253)
Q Consensus 171 ~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep~---------lLGDIvIs~e~v~rQA~eY~~ 229 (253)
.+|+|+|||+++|++||++|||+|+||||||||+.++. .|||||||+++|.+||++|+.
T Consensus 35 ~el~i~fv~~~~i~~LN~~yr~~d~pTDVLSFp~~~~~~~~~~~~~~~lGdI~Is~~~~~~qA~e~~~ 102 (145)
T PF02130_consen 35 FELSIVFVDDEEIRELNKQYRGKDYPTDVLSFPYDEPEEPISPLPFEYLGDIFISPDTAERQAEEYGH 102 (145)
T ss_dssp CEEEEEEE-HHHHHHHHHHHHS-SSS-SEEEEE--SSSTTEE-E---EEEEEEEEHHHHHHHHHHCTS
T ss_pred CeEEEEEECHHHHHHHHHHHcCCCCCCeEEeECCCCCcccccccccccCceEEECHHHHHHHHHHccC
Confidence 39999999999999999999999999999999997632 299999999999999999983
No 5
>PRK00016 metal-binding heat shock protein; Provisional
Probab=99.86 E-value=1.3e-21 Score=165.71 Aligned_cols=72 Identities=25% Similarity=0.216 Sum_probs=61.4
Q ss_pred ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC-----------CCcccEEEeHHHHHHHHHhhCCC-Cccchh
Q 025419 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP-----------ELKLPLVFSLCHAKYCVSAYSGV-WGGVEK 236 (253)
Q Consensus 169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep-----------~lLGDIvIs~e~v~rQA~eY~~~-~~~~~~ 236 (253)
...+|+|+|||+++|++||++|||||+||||||||+++. ..|||||||+++|.+||++|++. +.++-.
T Consensus 36 ~~~ev~i~~v~~~~i~~lN~~yr~~d~~TDVLSFp~~~~~~~~~~~~~~~~~LGDI~Is~~~~~~qa~~~~~s~~~e~~~ 115 (159)
T PRK00016 36 PEAELSIRLVDNEEIRELNLEYRGKDKPTDVLSFPMDELPLLEDDGEEGPAYLGDIVICPEVAEEQAEEQGHSLERELAH 115 (159)
T ss_pred CCeeEEEEEECcHHHHHHHHHHcCCCCCCcEEeccccccCccccccccCCcCceeEEEcHHHHHHHHHHcCCCHHHHHHH
Confidence 468999999999999999999999999999999999541 26999999999999999999844 445554
Q ss_pred hhhc
Q 025419 237 IVLE 240 (253)
Q Consensus 237 i~l~ 240 (253)
+..|
T Consensus 116 l~iH 119 (159)
T PRK00016 116 LTVH 119 (159)
T ss_pred HHHH
Confidence 4444
No 6
>TIGR00043 metalloprotein, YbeY/UPF0054 family. This minimally protein family is represented by a single member sequence only in nearly every bacterium. Crystallography demonstrates metal-binding activity, possibly to nickel. It is a predicted to be a metallohydrolase, and somewhat more weakly to be a metalloproteinase.
Probab=99.86 E-value=4.5e-22 Score=159.83 Aligned_cols=70 Identities=33% Similarity=0.409 Sum_probs=60.5
Q ss_pred eeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCCC--------CCcccEEEeHHHHHHHHHhhC-CCCccchhhhhc
Q 025419 171 IELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHVP--------ELKLPLVFSLCHAKYCVSAYS-GVWGGVEKIVLE 240 (253)
Q Consensus 171 ~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep--------~lLGDIvIs~e~v~rQA~eY~-~~~~~~~~i~l~ 240 (253)
.+|+|+|||+++|++||++|||||+||||||||++++ ..||||+||+++|.+||.+|+ .++.++-.+..|
T Consensus 1 ~~vsi~~v~~~~i~~lN~~yr~~d~~TDVLSF~~~~~~~~~~~~~~~lGdI~Is~~~~~~qa~~~~~~~~~e~~~l~iH 79 (110)
T TIGR00043 1 GELSLLFVDDEEIQELNREYRDKDYPTDVLSFPYEEEEPPDGFPEEVLGDIVISLEVAKEQAKEYGHSLERELAHLTVH 79 (110)
T ss_pred CEEEEEEECHHHHHHHHHHHhCCCCCCceEeecccCCcccccCCCCcceeEEEcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3799999999999999999999999999999999652 269999999999999999999 455555555544
No 7
>PLN02887 hydrolase family protein
Probab=96.87 E-value=0.00049 Score=69.37 Aligned_cols=74 Identities=24% Similarity=0.130 Sum_probs=53.0
Q ss_pred HHHHhhhcC-CCCCCCCcchhhcccCCCCcccccCCCCCCCCC-CCCCcccccccccccccccccccchhhHhhhhhccc
Q 025419 19 MARIISRAT-PLPLTRTSSAAISFLNSPSISFKTHRLDASSPS-KSSSLFGRGFRVLCRREEESVVRSSRKVFAEQRGYR 96 (253)
Q Consensus 19 mar~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~~a~~r~~r 96 (253)
|++.+||++ |+|...++++++ . +.|+++... ..++|.|++|+ .+.++.+.++++|.||+++.|.||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (580)
T PLN02887 1 MLPMLSRVSLPLRLPRLFPAAA-----R------EMPPAARLLLQPSSLSFSPKT-SNFNRLDVTSTEFSSFRKGFHAFR 68 (580)
T ss_pred CCccccccCCCCCCCCCCcccc-----C------CCChhhhhhcCccccccCCCC-CCCccccCCCCchhhHHHHHHHHh
Confidence 455667776 446666666665 1 333444333 34567999999 889999999999999999999999
Q ss_pred --cccCCCcc
Q 025419 97 --KVRRRVAK 104 (253)
Q Consensus 97 --k~r~~~~~ 104 (253)
|.|++.-.
T Consensus 69 ~~~~~~~~~~ 78 (580)
T PLN02887 69 STKPRGRVWA 78 (580)
T ss_pred hcCccccchh
Confidence 77776433
No 8
>cd06399 PB1_P40 The PB1 domain is essential part of the p40 adaptor protein which plays an important role in activating phagocyte NADPH oxidase during phagocytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes , such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domain of p40 represents a type I PB1 domain which interacts with the PB1 domain of oxidase activator p67 w
Probab=38.62 E-value=45 Score=27.11 Aligned_cols=70 Identities=19% Similarity=0.271 Sum_probs=45.9
Q ss_pred EEEeecCCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHHhCC
Q 025419 114 VSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRDE 193 (253)
Q Consensus 114 vqi~vE~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eYRgk 193 (253)
=+|+||+++...|.++.+...+|...+.. ..|+. | || .+++ -|++.||+.+.=+=++=||.
T Consensus 16 rdi~vee~l~~~P~~kdLl~lmr~~f~~~-dIaLN------Y--rD---------~EGD-LIRllddeDv~LMV~~~r~~ 76 (92)
T cd06399 16 RDIAVEEDLSSTPLLKDLLELTRREFQRE-DIALN------Y--RD---------AEGD-LIRLLSDEDVALMVRQSRGL 76 (92)
T ss_pred cceEeecccccCccHHHHHHHHHHHhchh-heeee------e--ec---------CCCC-EEEEcchhhHHHHHHHHhcC
Confidence 47899998887777777777555332211 22222 2 11 2333 48999999999999999988
Q ss_pred CCCCcEeeecC
Q 025419 194 DHATDVLYMSQ 204 (253)
Q Consensus 194 D~pTDVLSFP~ 204 (253)
..+-+ =||.
T Consensus 77 ~~~k~--~fPW 85 (92)
T cd06399 77 PSQKR--LFPW 85 (92)
T ss_pred CCccc--ccce
Confidence 76654 5553
No 9
>COG5639 Uncharacterized conserved small protein [Function unknown]
Probab=33.77 E-value=15 Score=28.87 Aligned_cols=17 Identities=29% Similarity=0.622 Sum_probs=15.3
Q ss_pred hhhHhhhhhccccccCC
Q 025419 85 SRKVFAEQRGYRKVRRR 101 (253)
Q Consensus 85 ~~~~~a~~r~~rk~r~~ 101 (253)
..+|+|+-|||+|.|.-
T Consensus 54 Le~Fla~DR~F~kark~ 70 (77)
T COG5639 54 LEAFLAGDRGFAKARKK 70 (77)
T ss_pred HHHHHhccHHHHHHHHh
Confidence 47999999999999985
No 10
>COG5149 TOA1 Transcription initiation factor IIA, large chain [Transcription]
Probab=26.55 E-value=44 Score=31.75 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=27.0
Q ss_pred eCHHHHHHHHHHHhCCCCCCcEeeecCCC
Q 025419 178 CNNEFIRKHNKEWRDEDHATDVLYMSQHV 206 (253)
Q Consensus 178 VDd~eIr~LN~eYRgkD~pTDVLSFP~~e 206 (253)
|||+..|+|-.-|..|--.|||-+||...
T Consensus 30 vdd~tlrelqnlwq~kl~~t~vatf~w~~ 58 (293)
T COG5149 30 VDDATLRELQNLWQSKLVATDVATFPWAQ 58 (293)
T ss_pred ccHHHHHHHHHHHHHhhhhheeeecchhh
Confidence 69999999999999999999999999753
Done!