Query 025419
Match_columns 253
No_of_seqs 215 out of 1188
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:53:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025419.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025419hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xm5_A Hypothetical UPF0054 pr 99.9 4.1E-25 1.4E-29 186.0 11.9 94 109-230 3-103 (155)
2 1xax_A Hypothetical UPF0054 pr 99.9 4.3E-25 1.5E-29 185.7 12.0 94 109-230 3-103 (154)
3 1oz9_A Hypothetical protein AQ 99.9 1.1E-24 3.7E-29 182.1 10.1 61 169-229 39-103 (150)
4 1tvi_A Hypothetical UPF0054 pr 99.9 4.3E-25 1.5E-29 189.3 6.0 88 114-229 24-112 (172)
5 1oey_J P40-PHOX, neutrophil cy 12.8 2.9E+02 0.01 21.9 4.8 73 111-204 18-90 (107)
6 3i5c_A Fusion of general contr 6.6 4.7E+02 0.016 19.8 3.9 20 171-190 60-79 (206)
7 4fp5_D LT-IIB, heat-labIle ent 6.1 63 0.0022 25.0 -1.5 13 191-203 51-63 (98)
8 3kqr_A Serum amyloid P-compone 6.0 2.2E+02 0.0074 23.5 1.6 42 172-216 156-199 (204)
9 1qb5_D Protein (heat labIle en 6.0 65 0.0022 25.0 -1.5 13 191-203 51-63 (99)
10 3qyy_A Response regulator; C-D 5.9 4.2E+02 0.014 19.5 3.1 19 172-190 42-60 (167)
No 1
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Probab=99.92 E-value=4.1e-25 Score=185.95 Aligned_cols=94 Identities=20% Similarity=0.264 Sum_probs=80.0
Q ss_pred ceEEEEEEeecC--CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHH
Q 025419 109 ELELNVSICIED--ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKH 186 (253)
Q Consensus 109 ~l~l~vqi~vE~--~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~L 186 (253)
++.++||+.++. .||++..+..|++ .|+... ....||+|+||||++|++|
T Consensus 3 ~~~l~iqi~~~~~~~~~~~~~~~~~~~-------~~l~~~---------------------~~~~elsv~~vdd~~i~~L 54 (155)
T 1xm5_A 3 QVILDLQLACEDNSGLPEESQFQTWLN-------AVIPQF---------------------QEESEVTIRVVDTAESHSL 54 (155)
T ss_dssp EEEEEEEECSSSCCSCCCHHHHHHHHH-------TTSHHH---------------------HSEEEEEEEEECHHHHHHH
T ss_pred ceEEEEEEecccccCCCCHHHHHHHHH-------HHHHhc---------------------CCCcEEEEEEECHHHHHHH
Confidence 367889998875 6898888998888 544431 0368999999999999999
Q ss_pred HHHHhCCCCCCcEeeecCCCC-----CCcccEEEeHHHHHHHHHhhCCC
Q 025419 187 NKEWRDEDHATDVLYMSQHVP-----ELKLPLVFSLCHAKYCVSAYSGV 230 (253)
Q Consensus 187 N~eYRgkD~pTDVLSFP~~ep-----~lLGDIvIs~e~v~rQA~eY~~~ 230 (253)
|++|||||+||||||||++++ .+|||||||.++|++||++||+-
T Consensus 55 N~~yr~~d~pTDVLSFp~~~~~~~~~~~LGDIvIs~~~v~~qA~e~g~s 103 (155)
T 1xm5_A 55 NLTYRGKDKPTNVLSFPFEVPPGMEMSLLGDLVICRQVVEKEAQEQGKP 103 (155)
T ss_dssp HHHHHCCSSCCSEEEEECCCCSSCCCCEEEEEEEEHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCeEEeECCCCCCCCCcccCccEEEcHHHHHHHHHHcCCC
Confidence 999999999999999999764 35999999999999999999843
No 2
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=99.92 E-value=4.3e-25 Score=185.66 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=79.5
Q ss_pred ceEEEEEEeecC--CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHH
Q 025419 109 ELELNVSICIED--ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKH 186 (253)
Q Consensus 109 ~l~l~vqi~vE~--~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~L 186 (253)
.+.++||+.++. .||++..+..|++ .|++. . ....||+|+||||++|++|
T Consensus 3 ~~~l~i~i~~~~~~~~~~~~~~~~~~~-------~~l~~-------------------~--~~~~elsv~~vdd~~i~~L 54 (154)
T 1xax_A 3 SVLVDLQIATENIEGLPTEEQIVQWAT-------GAVQP-------------------E--GNEVEMTVRIVDEAESHEL 54 (154)
T ss_dssp CEEEEEEECCSSCSSCCTHHHHHHHHH-------HHHSS-------------------S--CCCEEEEEEECCHHHHHHH
T ss_pred ceEEEEEEecCcccCCCCHHHHHHHHH-------HHHHh-------------------c--CCCcEEEEEEECHHHHHHH
Confidence 367888988875 6888888888888 54331 1 2468999999999999999
Q ss_pred HHHHhCCCCCCcEeeecCCCC-----CCcccEEEeHHHHHHHHHhhCCC
Q 025419 187 NKEWRDEDHATDVLYMSQHVP-----ELKLPLVFSLCHAKYCVSAYSGV 230 (253)
Q Consensus 187 N~eYRgkD~pTDVLSFP~~ep-----~lLGDIvIs~e~v~rQA~eY~~~ 230 (253)
|++|||||+||||||||++++ .+|||||||.++|++||++||+-
T Consensus 55 N~~yr~~d~pTDVLSFp~~~~~~~~~~~LGDIvIs~~~~~~qA~e~g~s 103 (154)
T 1xax_A 55 NLTYRGKDRPTNVLSFPFECPDEVELPLLGDLVICRQVVEREASEQEKP 103 (154)
T ss_dssp HHHHTCCCSSCSEEEECCCCSSCCCCCCCBEEEECHHHHHHHHHHHTSC
T ss_pred HHHHhCCCCCCeEEeECCCCCCCCCcccCccEEEcHHHHHHHHHHcCCC
Confidence 999999999999999999763 36999999999999999999843
No 3
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=99.91 E-value=1.1e-24 Score=182.12 Aligned_cols=61 Identities=26% Similarity=0.314 Sum_probs=57.1
Q ss_pred ceeeEEEEEeCHHHHHHHHHHHhCCCCCCcEeeecCCC----CCCcccEEEeHHHHHHHHHhhCC
Q 025419 169 ESIELSILFCNNEFIRKHNKEWRDEDHATDVLYMSQHV----PELKLPLVFSLCHAKYCVSAYSG 229 (253)
Q Consensus 169 ~~~ELSI~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~e----p~lLGDIvIs~e~v~rQA~eY~~ 229 (253)
...||+|+||||++|++||++|||||+||||||||+++ +.+|||||||+++|++||++||+
T Consensus 39 ~~~elsv~~vdd~~i~~LN~~yR~~d~pTDVLSFp~~e~~~~~~~LGDIvIs~~~v~~qA~e~g~ 103 (150)
T 1oz9_A 39 NNVELSVYITDDQEIRELNKTYRKKDKPTDVLSFPMGEEFGGYKILGDVVISQDTAERQARELGH 103 (150)
T ss_dssp CSEEEEEEEECHHHHHHHHHHHHSCCSCCSEEEEECCCEETTEEEEEEEEEEHHHHHHHHHHHTS
T ss_pred CceEEEEEEECHHHHHHHHHHHhCCCCCCcEEeecCCCCCCCCcCceeEEEcHHHHHHHHHHhCC
Confidence 57899999999999999999999999999999999976 24799999999999999999985
No 4
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed 4-stranded beta sheet, four helix bundle, structural genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15
Probab=99.91 E-value=4.3e-25 Score=189.32 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=72.4
Q ss_pred EEEeecC-CCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHHhC
Q 025419 114 VSICIED-ELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEWRD 192 (253)
Q Consensus 114 vqi~vE~-~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eYRg 192 (253)
|+|.++. +||....+..|++ .+++. + + ...||+|+||||++|++||++|||
T Consensus 24 i~i~~e~~~~~~~~~~~~~i~-------~~l~~----~---------------~--~~~Elsv~~vdd~~i~~LN~~yR~ 75 (172)
T 1tvi_A 24 IRILGEGKGSKLLENLKEKLE-------EIVKK----E---------------I--GDVHVNVILVSEDEIKELNQQFRG 75 (172)
T ss_dssp CEEEECSTTHHHHHHSHHHHH-------HHHHH----H---------------T--SCCCCEEEECCHHHHHHHHHTTTC
T ss_pred eEEeecCCCccHHHHHHHHHH-------HHHHh----c---------------C--CCcEEEEEEECHHHHHHHHHHHhC
Confidence 5666666 6665556666666 44332 2 2 468999999999999999999999
Q ss_pred CCCCCcEeeecCCCCCCcccEEEeHHHHHHHHHhhCC
Q 025419 193 EDHATDVLYMSQHVPELKLPLVFSLCHAKYCVSAYSG 229 (253)
Q Consensus 193 kD~pTDVLSFP~~ep~lLGDIvIs~e~v~rQA~eY~~ 229 (253)
||+||||||||++++++|||||||+++|++||++|++
T Consensus 76 kD~pTDVLSFp~~e~~~LGDIvIs~e~v~rqA~e~g~ 112 (172)
T 1tvi_A 76 QDRPTDVLTFPLMEEDVYGEIYVCPLIVEENAREFNN 112 (172)
T ss_dssp CCCCCSEECCCCCSSSCCSEEEECHHHHHHHHHHTTC
T ss_pred CCCCCeEEEecCCCCCCceeEEEcHHHHHHHHHHhCC
Confidence 9999999999998767999999999999999999985
No 5
>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=12.76 E-value=2.9e+02 Score=21.94 Aligned_cols=73 Identities=15% Similarity=0.235 Sum_probs=47.0
Q ss_pred EEEEEEeecCCCCCcHHHHHHHHHhccChHHHHHHHHhhcccccccccchhhhhcCCCceeeEEEEEeCHHHHHHHHHHH
Q 025419 111 ELNVSICIEDELPDDPEVLNFAEMLRVNAPTLMKLAFDSLKDSTYKTRDTAIEDAGGFESIELSILFCNNEFIRKHNKEW 190 (253)
Q Consensus 111 ~l~vqi~vE~~~P~~~~l~~~~e~Lr~~~~~Al~~Al~~l~~s~yktrdt~i~~~~~~~~~ELSI~fVDd~eIr~LN~eY 190 (253)
...-+|+||+++...|.+..++.++| ..++. +.+. =+| ||. +++ -|++.||+.+.-+=++=
T Consensus 18 ~~irdI~veedl~~~P~ykdLl~lmr----~~F~~--~DIa-LNY--rD~---------eGD-LIrilddeDv~lmi~~s 78 (107)
T 1oey_J 18 STIKDIAVEEDLSSTPLLKDLLELTR----REFQR--EDIA-LNY--RDA---------EGD-LVRLLSDEDVALMVRQA 78 (107)
T ss_dssp EEEEEEEECSCTTCCCCHHHHHHHHH----HHHCC--SSEE-EEE--ECT---------TSC-EEECCSHHHHHHHHHHC
T ss_pred ceeeeEEEccccccCCCHHHHHHHHH----HHhcc--ccee-eee--ecC---------CCC-EEEEcchHHHHHHHHHh
Confidence 35578999998877777777777555 33321 0000 012 222 233 48899999999999988
Q ss_pred hCCCCCCcEeeecC
Q 025419 191 RDEDHATDVLYMSQ 204 (253)
Q Consensus 191 RgkD~pTDVLSFP~ 204 (253)
|+....-+ =||.
T Consensus 79 r~~~s~k~--~FPW 90 (107)
T 1oey_J 79 RGLPSQKR--LFPW 90 (107)
T ss_dssp CCCCCTTC--BCSS
T ss_pred hcCccccc--ccce
Confidence 88766665 5664
No 6
>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*
Probab=6.64 E-value=4.7e+02 Score=19.83 Aligned_cols=20 Identities=20% Similarity=0.511 Sum_probs=14.8
Q ss_pred eeEEEEEeCHHHHHHHHHHH
Q 025419 171 IELSILFCNNEFIRKHNKEW 190 (253)
Q Consensus 171 ~ELSI~fVDd~eIr~LN~eY 190 (253)
..++|+++|-+..+.+|..|
T Consensus 60 ~~~~l~~idid~f~~in~~~ 79 (206)
T 3i5c_A 60 SQLSLLMIDVDYFKSYNDTF 79 (206)
T ss_dssp CCEEEEEEEETTHHHHHHHH
T ss_pred CcEEEEEEECcchhHHHhcc
Confidence 34788888877778888655
No 7
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=6.14 E-value=63 Score=25.01 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.7
Q ss_pred hCCCCCCcEeeec
Q 025419 191 RDEDHATDVLYMS 203 (253)
Q Consensus 191 RgkD~pTDVLSFP 203 (253)
|++|||-||||=.
T Consensus 51 ~~~dypdn~~s~e 63 (98)
T 4fp5_D 51 RAKDYPDNVMTAE 63 (98)
T ss_dssp CCSSTTHHHHHHH
T ss_pred CCCCCChhhhhHH
Confidence 6899999998754
No 8
>3kqr_A Serum amyloid P-component; glycoprotein, disulfide bond, lectin, metal-binding secreted; HET: NAG; 1.50A {Homo sapiens} SCOP: b.29.1.5 PDB: 1lgn_A* 1gyk_A 2a3w_A* 2a3x_A* 2a3y_A* 1sac_A* 3d5o_A* 2w08_A*
Probab=6.02 E-value=2.2e+02 Score=23.54 Aligned_cols=42 Identities=12% Similarity=0.108 Sum_probs=29.1
Q ss_pred eEEE--EEeCHHHHHHHHHHHhCCCCCCcEeeecCCCCCCcccEEEe
Q 025419 172 ELSI--LFCNNEFIRKHNKEWRDEDHATDVLYMSQHVPELKLPLVFS 216 (253)
Q Consensus 172 ELSI--~fVDd~eIr~LN~eYRgkD~pTDVLSFP~~ep~lLGDIvIs 216 (253)
+|.| +..+++||+.+ +.+.+..-|||++....-.+-|+++|-
T Consensus 156 ~v~iW~~aLs~~eI~~l---~~~~~~~Gnv~~W~~~~~~~~G~v~~~ 199 (204)
T 3kqr_A 156 DLYMWDSVLPPENILSA---YQGTPLPANILDWQALNYEIRGYVIIK 199 (204)
T ss_dssp EEEEESSCCCHHHHHHH---HHTCCCCCSSEETTSCEEEEESSCEEE
T ss_pred eEEEECccCCHHHHHHH---HhCCCCCCCEEecccCEEEeeeeEEEe
Confidence 4444 45678899887 455566789999976444567777764
No 9
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=6.00 E-value=65 Score=24.98 Aligned_cols=13 Identities=23% Similarity=0.371 Sum_probs=10.7
Q ss_pred hCCCCCCcEeeec
Q 025419 191 RDEDHATDVLYMS 203 (253)
Q Consensus 191 RgkD~pTDVLSFP 203 (253)
|++|||-||||=.
T Consensus 51 ~~~dypdn~~s~e 63 (99)
T 1qb5_D 51 RAKDYPDNVMTAE 63 (99)
T ss_dssp CCSSTTHHHHHHH
T ss_pred CCCCCChhhhhHH
Confidence 6899999998754
No 10
>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}
Probab=5.85 E-value=4.2e+02 Score=19.52 Aligned_cols=19 Identities=5% Similarity=0.256 Sum_probs=13.5
Q ss_pred eEEEEEeCHHHHHHHHHHH
Q 025419 172 ELSILFCNNEFIRKHNKEW 190 (253)
Q Consensus 172 ELSI~fVDd~eIr~LN~eY 190 (253)
.++|+++|-+..+.+|..|
T Consensus 42 ~~~l~~idid~f~~in~~~ 60 (167)
T 3qyy_A 42 PFVLFVLDMDNLKPINDRF 60 (167)
T ss_dssp CCEEEEEEESSHHHHHHHH
T ss_pred cEEEEEEechhhhHHHhhc
Confidence 4677888777777777655
Done!