Your job contains 1 sequence.
>025421
MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG
NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI
PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF
ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE
AGQGKTPLGALGL
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 025421
(253 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2036209 - symbol:LHCB6 "light harvesting compl... 1094 8.7e-111 1
TAIR|locus:2202150 - symbol:Lhca6 "photosystem I light ha... 345 2.0e-31 1
TAIR|locus:2825741 - symbol:Lhca5 "photosystem I light ha... 324 3.4e-29 1
TAIR|locus:2082767 - symbol:LHCA2 "photosystem I light ha... 313 5.0e-28 1
TAIR|locus:2079117 - symbol:LHCA4 "light-harvesting chlor... 252 1.5e-26 2
TAIR|locus:2047751 - symbol:LHCB4.3 "light harvesting com... 137 8.8e-25 3
TAIR|locus:2082717 - symbol:LHCA1 "photosystem I light ha... 201 1.0e-23 2
UNIPROTKB|Q93WD2 - symbol:Lhcb4 "Chlorophyll a-b binding ... 136 1.2e-23 3
TAIR|locus:2149765 - symbol:LHCB4.1 "light harvesting com... 134 4.1e-17 2
TAIR|locus:2162540 - symbol:LHCB3 "light-harvesting chlor... 139 1.2e-16 3
TAIR|locus:2200868 - symbol:LHCA3 "photosystem I light ha... 205 1.4e-16 1
TAIR|locus:2097608 - symbol:LHCB4.2 "light harvesting com... 137 2.1e-16 2
TAIR|locus:2019287 - symbol:CAB3 "chlorophyll A/B binding... 198 7.7e-16 1
TAIR|locus:2019372 - symbol:CAB2 "chlorophyll A/B-binding... 198 7.7e-16 1
TAIR|locus:2122794 - symbol:LHCB5 "light harvesting compl... 155 1.2e-15 2
UNIPROTKB|P12331 - symbol:CAB2R "Chlorophyll a-b binding ... 194 2.0e-15 1
TAIR|locus:2040934 - symbol:LHB1B2 "photosystem II light ... 194 2.0e-15 1
TAIR|locus:2040944 - symbol:LHB1B1 "light-harvesting chlo... 194 2.0e-15 1
TAIR|locus:2019322 - symbol:CAB1 "chlorophyll A/B binding... 193 2.6e-15 1
UNIPROTKB|P12330 - symbol:CAB1R "Chlorophyll a-b binding ... 189 6.9e-15 1
TAIR|locus:2011691 - symbol:AT1G76570 species:3702 "Arabi... 136 7.5e-15 2
TAIR|locus:2044988 - symbol:LHCB2.2 "photosystem II light... 183 3.0e-14 1
TAIR|locus:2042148 - symbol:LHCB2.1 "photosystem II light... 183 3.0e-14 1
TAIR|locus:2089139 - symbol:LHCB2.3 "photosystem II light... 182 3.8e-14 1
TAIR|locus:2056815 - symbol:AT2G03850 "AT2G03850" species... 127 9.7e-07 1
TAIR|locus:2044194 - symbol:AT2G03740 "AT2G03740" species... 110 0.00018 1
>TAIR|locus:2036209 [details] [associations]
symbol:LHCB6 "light harvesting complex photosystem II
subunit 6" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0015979
"photosynthesis" evidence=IMP;NAS] [GO:0009783 "photosystem II
antenna complex" evidence=NAS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0010196 "nonphotochemical quenching"
evidence=IMP] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0035304 "regulation of protein dephosphorylation"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 EMBL:AC034256 HOGENOM:HOG000238033 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009783 GO:GO:0010196
UniGene:At.25300 EMBL:AF332425 EMBL:AY065113 EMBL:AY081644
IPI:IPI00524194 PIR:F86292 RefSeq:NP_173034.1 UniGene:At.15569
UniGene:At.72611 UniGene:At.74824 UniGene:At.74983
ProteinModelPortal:Q9LMQ2 SMR:Q9LMQ2 STRING:Q9LMQ2 PaxDb:Q9LMQ2
PRIDE:Q9LMQ2 DNASU:838151 EnsemblPlants:AT1G15820.1 GeneID:838151
KEGG:ath:AT1G15820 TAIR:At1g15820 eggNOG:NOG277110
InParanoid:Q9LMQ2 KO:K08917 OMA:SWIPAFK PhylomeDB:Q9LMQ2
ProtClustDB:PLN00170 ArrayExpress:Q9LMQ2 Genevestigator:Q9LMQ2
Uniprot:Q9LMQ2
Length = 258
Score = 1094 (390.2 bits), Expect = 8.7e-111, P = 8.7e-111
Identities = 205/258 (79%), Positives = 221/258 (85%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-----GTNRVTXXXXXXXXXXLPPKKSWIPA 55
MA A SGAVL+GLGSSF+ GGK+ LA G RV PKKSWIPA
Sbjct: 1 MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFAN TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>TAIR|locus:2202150 [details] [associations]
symbol:Lhca6 "photosystem I light harvesting complex gene
6" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0019761
"glucosinolate biosynthetic process" evidence=RCA] [GO:0030003
"cellular cation homeostasis" evidence=RCA] [GO:0070838 "divalent
metal ion transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GO:GO:0009507 GO:GO:0016020 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 KO:K08908 EMBL:AY086461 EMBL:BT020322
EMBL:BT020554 IPI:IPI00532569 RefSeq:NP_173349.1 UniGene:At.359
ProteinModelPortal:Q8LCQ4 SMR:Q8LCQ4 STRING:Q8LCQ4 PRIDE:Q8LCQ4
DNASU:838498 EnsemblPlants:AT1G19150.1 GeneID:838498
KEGG:ath:AT1G19150 TAIR:At1g19150 InParanoid:Q8LCQ4 OMA:WFAQAEL
PhylomeDB:Q8LCQ4 ProtClustDB:PLN00098 Genevestigator:Q8LCQ4
Uniprot:Q8LCQ4
Length = 270
Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
Identities = 83/200 (41%), Positives = 109/200 (54%)
Query: 46 LPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWA 104
LPP + W P G + PEWLDGSLPGD+GFDPLGLG DP LKW+ +AELIH RWA
Sbjct: 61 LPPDRPLWFP----GSS--PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWA 114
Query: 105 MAAVVGIFVGQAWSGIPWFE--AGADPGAIAPFSFGS-LLGTQLLLMGWVESKRWVDFFN 161
M AV GI + + + + E + D G+ F+ + L Q++LMGW E +RW D
Sbjct: 115 MLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIK 174
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
P S +E P N + GYPGG +FD + + V + L+
Sbjct: 175 PGSVDIEPKYPHK------VNPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRT 220
Query: 222 AEIKHARLAMVAMLIFYFEA 241
EIK+ RLAM+A L F F+A
Sbjct: 221 KEIKNGRLAMLAFLGFCFQA 240
>TAIR|locus:2825741 [details] [associations]
symbol:Lhca5 "photosystem I light harvesting complex gene
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009782 "photosystem I
antenna complex" evidence=IDA] [GO:0031409 "pigment binding"
evidence=IDA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=IGI] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009657 "plastid organization" evidence=RCA]
[GO:0010027 "thylakoid membrane organization" evidence=RCA]
[GO:0010207 "photosystem II assembly" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684 EMBL:AC083835
GO:GO:0009535 GO:GO:0031409 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 GO:GO:0009768
UniGene:At.52042 EMBL:AY062097 EMBL:AY090263 EMBL:AK221694
IPI:IPI00542586 PIR:F96510 RefSeq:NP_175137.1 RefSeq:NP_849778.1
UniGene:At.20798 ProteinModelPortal:Q9C639 SMR:Q9C639 STRING:Q9C639
PRIDE:Q9C639 EnsemblPlants:AT1G45474.1 EnsemblPlants:AT1G45474.2
GeneID:841099 KEGG:ath:AT1G45474 TAIR:At1g45474 InParanoid:Q9C639
KO:K08911 OMA:VQASVTH PhylomeDB:Q9C639 ProtClustDB:PLN00147
Genevestigator:Q9C639 GO:GO:0009782 Uniprot:Q9C639
Length = 256
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 88/210 (41%), Positives = 118/210 (56%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P + P +LDG+L GDYGFDPLGLG+DP LKWY +AEL+H R+AM V
Sbjct: 46 RATWLPGLNP------PPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGV 99
Query: 109 VGIFVGQAW--SGI---P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
GI +GI P W+EAGA A S +L+ Q LLMG+ E+KR++DF +P
Sbjct: 100 AGILFTDLLRTTGIRNLPVWYEAGAVKFDFA--STKTLIVVQFLLMGFAETKRYMDFVSP 157
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
SQ+ E + + A A E GYPGG +PL LA D + K+
Sbjct: 158 GSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLK 205
Query: 223 EIKHARLAMVAMLIFYFEAGQGKT-PLGAL 251
EIK+ RLAM+AML F+ +A T P+ L
Sbjct: 206 EIKNGRLAMMAMLGFFVQASVTHTGPIDNL 235
>TAIR|locus:2082767 [details] [associations]
symbol:LHCA2 "photosystem I light harvesting complex gene
2" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0009768 "photosynthesis, light harvesting in
photosystem I" evidence=TAS] [GO:0009782 "photosystem I antenna
complex" evidence=TAS] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 EMBL:CP002686 GO:GO:0009535 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
TCDB:5.B.4.1.1 UniGene:At.46743 UniGene:At.55066 KO:K08908
EMBL:AF134120 EMBL:AY054670 EMBL:AY065429 EMBL:AY072483
EMBL:BT002070 IPI:IPI00543126 PIR:T50550 RefSeq:NP_191706.2
ProteinModelPortal:Q9SYW8 SMR:Q9SYW8 STRING:Q9SYW8 PRIDE:Q9SYW8
EnsemblPlants:AT3G61470.1 GeneID:825320 KEGG:ath:AT3G61470
TAIR:At3g61470 InParanoid:Q9SYW8 OMA:SWYTAGE PhylomeDB:Q9SYW8
ProtClustDB:CLSN2696878 ArrayExpress:Q9SYW8 Genevestigator:Q9SYW8
Uniprot:Q9SYW8
Length = 257
Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
Identities = 89/244 (36%), Positives = 120/244 (49%)
Query: 6 SGAVLNGLGSSFINGGK---KSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNL 62
S A+ SF+ G K K + + +R P + W P G+
Sbjct: 8 SSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRAVAAD--PDRPIWFP-----GST 60
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GI 120
PEWLDGSLPGD+GFDPLGL DP LKW +AE++H RWAM GIF+ + + GI
Sbjct: 61 -PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGI 119
Query: 121 ---P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
P W+ AG + L +L+L+GW E +RW D P S + + P
Sbjct: 120 LNTPSWYTAGEQEYFTDKTT---LFVVELILIGWAEGRRWADIIKPGSVNTDPVFP---- 172
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
N T + GYPGG +FDPL G G P KL L+ EIK+ RLAM+A++
Sbjct: 173 -NNKLTGT-DVGYPGGLWFDPL---GW---GSGSP--AKLKELRTKEIKNGRLAMLAVMG 222
Query: 237 FYFE 240
+F+
Sbjct: 223 AWFQ 226
>TAIR|locus:2079117 [details] [associations]
symbol:LHCA4 "light-harvesting chlorophyll-protein
complex I subunit A4" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;NAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0080167 "response to karrikin" evidence=IEP] [GO:0019344
"cysteine biosynthetic process" evidence=RCA] [GO:0030003 "cellular
cation homeostasis" evidence=RCA] [GO:0070838 "divalent metal ion
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0009941 GO:GO:0080167 GO:GO:0018298 GO:GO:0009535
GO:GO:0010287 EMBL:AL132955 EMBL:M63931 EMBL:AY093080 EMBL:BT000093
EMBL:AY086470 IPI:IPI00523187 PIR:T45707 RefSeq:NP_190331.3
UniGene:At.21346 UniGene:At.27524 UniGene:At.35504 UniGene:At.35803
UniGene:At.66361 UniGene:At.68076 UniGene:At.71101
ProteinModelPortal:P27521 SMR:P27521 STRING:P27521 PaxDb:P27521
PRIDE:P27521 EnsemblPlants:AT3G47470.1 GeneID:823901
KEGG:ath:AT3G47470 TAIR:At3g47470 eggNOG:NOG249845
HOGENOM:HOG000238033 InParanoid:P27521 KO:K08910 OMA:WFVQAEL
PhylomeDB:P27521 ProtClustDB:PLN00101 Genevestigator:P27521
GermOnline:AT3G47470 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
Uniprot:P27521
Length = 251
Score = 252 (93.8 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 64/161 (39%), Positives = 92/161 (57%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P++L GSL GD GFDPLGL +DP LKW+ +AEL++GRWAM V
Sbjct: 54 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGV 107
Query: 109 VGIFVGQAWS--GI---P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ GI P W++AG + A S +L + +L +VE +RW D NP
Sbjct: 108 AGMLLPEVFTKIGIINVPEWYDAGKEQ-YFA--SSSTLFVIEFILFHYVEIRRWQDIKNP 164
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGT 203
S + + P + ++ GE GYPGG F+PL A T
Sbjct: 165 GSVNQD---P---IFKQYSLPKGEVGYPGG-IFNPLNFAPT 198
Score = 62 (26.9 bits), Expect = 1.5e-26, Sum P(2) = 1.5e-26
Identities = 24/64 (37%), Positives = 29/64 (45%)
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-Q 243
GE GYPGG F+PL A T K E+ + RLAM+A L F +
Sbjct: 181 GEVGYPGG-IFNPLNFAPT-------------QEAKEKELANGRLAMLAFLGFVVQHNVT 226
Query: 244 GKTP 247
GK P
Sbjct: 227 GKGP 230
>TAIR|locus:2047751 [details] [associations]
symbol:LHCB4.3 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0046872 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 HOGENOM:HOG000238033
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915
OMA:TTLIWIE ProtClustDB:PLN00187 EMBL:AF134128 EMBL:AY070392
EMBL:AY096735 EMBL:AY088398 IPI:IPI00538445 PIR:T52316
RefSeq:NP_181539.1 UniGene:At.24469 ProteinModelPortal:Q9S7W1
SMR:Q9S7W1 PaxDb:Q9S7W1 PRIDE:Q9S7W1 EnsemblPlants:AT2G40100.1
GeneID:818599 KEGG:ath:AT2G40100 TAIR:At2g40100 InParanoid:Q9S7W1
PhylomeDB:Q9S7W1 Genevestigator:Q9S7W1 GermOnline:AT2G40100
Uniprot:Q9S7W1
Length = 276
Score = 137 (53.3 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 36/64 (56%), Positives = 41/64 (64%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 247
YPGG +FDPL LA D EKLD LK+AEIKH+RLAMVA LIF +A GK P
Sbjct: 218 YPGG-YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGP 267
Query: 248 LGAL 251
+ L
Sbjct: 268 VSFL 271
Score = 123 (48.4 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 29/81 (35%), Positives = 46/81 (56%)
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQ 144
+RE ELIHGRWAM +G +A +GI W +AG G PFS +L+ +
Sbjct: 137 FRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIE 196
Query: 145 LLLMGWVESKRWVDFFNPESQ 165
+L++G++E +R + +PE +
Sbjct: 197 VLVVGYIEFQRNSEL-DPEKR 216
Score = 108 (43.1 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 26/52 (50%), Positives = 31/52 (59%)
Query: 47 PPKKSWIPAVKGGGNLI-----NP-EWLDGSLPGDYGFDPLGLGKDPAFLKW 92
PPKKS G L+ NP EWLDGS+ GD GFDP GLGK +L++
Sbjct: 43 PPKKSR-QVQDDGDRLVWFPGANPPEWLDGSMIGDRGFDPFGLGKPAEYLQY 93
Score = 40 (19.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 204 IKDGVYIPDTEK--LDRLKVAEIKHARLAMVAML 235
IK + P TE + R + E+ H R AM+ L
Sbjct: 120 IKPTPFQPYTEVFGIQRFRECELIHGRWAMLGTL 153
>TAIR|locus:2082717 [details] [associations]
symbol:LHCA1 "photosystem I light harvesting complex gene
1" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009768 "photosynthesis, light harvesting in photosystem I"
evidence=IMP] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL049655
GO:GO:0046872 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:M85150 EMBL:X56062
EMBL:AF324692 EMBL:AF325016 EMBL:AF326866 EMBL:AF339688
EMBL:AF361847 EMBL:AY070473 EMBL:AY094437 EMBL:BT000852
EMBL:AK317555 IPI:IPI00516813 PIR:S25435 RefSeq:NP_191049.1
UniGene:At.23982 UniGene:At.67867 PDB:2O01 PDB:2WSC PDB:2WSE
PDB:2WSF PDBsum:2O01 PDBsum:2WSC PDBsum:2WSE PDBsum:2WSF
ProteinModelPortal:Q01667 SMR:Q01667 DIP:DIP-59003N STRING:Q01667
PaxDb:Q01667 PRIDE:Q01667 ProMEX:Q01667 EnsemblPlants:AT3G54890.1
GeneID:824654 KEGG:ath:AT3G54890 TAIR:At3g54890 eggNOG:NOG263751
InParanoid:Q01667 KO:K08907 OMA:LAIEFLA PhylomeDB:Q01667
ProtClustDB:PLN00099 EvolutionaryTrace:Q01667 Genevestigator:Q01667
GO:GO:0009768 Uniprot:Q01667
Length = 241
Score = 201 (75.8 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 51/112 (45%), Positives = 69/112 (61%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 125 A---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQ 165
A A PG A P +G+L L + L + +VE +R ++ +PE +
Sbjct: 115 AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-DPEKK 165
Score = 86 (35.3 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 28/62 (45%), Positives = 35/62 (56%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE--AGQGKT 246
YPGG F DPL G Y D +KL+ LKV EIK+ RLA++A + F + A G
Sbjct: 167 YPGGAF-DPL---G------YSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTG 216
Query: 247 PL 248
PL
Sbjct: 217 PL 218
>UNIPROTKB|Q93WD2 [details] [associations]
symbol:Lhcb4 "Chlorophyll a-b binding protein CP29"
species:3055 "Chlamydomonas reinhardtii" [GO:0009503 "thylakoid
light-harvesting complex" evidence=IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=NAS] [GO:0016168
"chlorophyll binding" evidence=NAS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 GO:GO:0010287
GO:GO:0009522 GO:GO:0009523 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:AB051207 EMBL:AB051211
EMBL:AY171230 RefSeq:XP_001697193.1 UniGene:Cre.4370
ProteinModelPortal:Q93WD2 DIP:DIP-48401N STRING:Q93WD2 PRIDE:Q93WD2
GeneID:5722671 KEGG:cre:CHLREDRAFT_184810 eggNOG:NOG319330
KO:K08915 OMA:TTLIWIE ProtClustDB:CLSN2922608
BioCyc:MetaCyc:CHLREDRAFT_184810-MONOMER GO:GO:0009503
Uniprot:Q93WD2
Length = 280
Score = 136 (52.9 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 33/80 (41%), Positives = 46/80 (57%)
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA---DPGAIA----PFSFGSLLGTQL 145
+RE ELIHGRWAM A +G V +A +G+ W EAG D + A PFS L+ ++
Sbjct: 133 FRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEV 192
Query: 146 LLMGWVESKRWVDFFNPESQ 165
+L+G E R + NPE +
Sbjct: 193 ILVGGAEFYRNSET-NPEKR 211
Score = 117 (46.2 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 23/39 (58%), Positives = 25/39 (64%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
W+P N PEWLDGSLPGD GFDPLGL K F+
Sbjct: 53 WLP------NTTRPEWLDGSLPGDRGFDPLGLSKPSEFV 85
Score = 105 (42.0 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 31/64 (48%), Positives = 37/64 (57%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTP 247
YPGG FDPL LA D E+ RLK AEIKHARLAMV+ + +A G+
Sbjct: 213 YPGG-VFDPLKLASE--------DEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGA 263
Query: 248 LGAL 251
LG+L
Sbjct: 264 LGSL 267
Score = 39 (18.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 216 LDRLKVAEIKHARLAMVAML 235
L R + E+ H R AM+A L
Sbjct: 130 LARFRECELIHGRWAMLACL 149
>TAIR|locus:2149765 [details] [associations]
symbol:LHCB4.1 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046872
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0018298
GO:GO:0009535 GO:GO:0010287 HOGENOM:HOG000238033 GO:GO:0009522
GO:GO:0009523 GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 eggNOG:NOG319330 KO:K08915 EMBL:X71878
EMBL:AL161946 EMBL:AF370474 EMBL:AY048262 EMBL:AY048300
EMBL:AY057641 EMBL:AY059861 EMBL:AY081680 EMBL:AY092980
EMBL:AY133566 EMBL:BT000363 IPI:IPI00542715 PIR:S33443
RefSeq:NP_195773.1 UniGene:At.23015 UniGene:At.23659
UniGene:At.23691 UniGene:At.24017 UniGene:At.75201
ProteinModelPortal:Q07473 SMR:Q07473 IntAct:Q07473 STRING:Q07473
PaxDb:Q07473 PRIDE:Q07473 EnsemblPlants:AT5G01530.1 GeneID:830325
KEGG:ath:AT5G01530 TAIR:At5g01530 InParanoid:Q07473 OMA:PLHTTIF
PhylomeDB:Q07473 ProtClustDB:PLN00187 Genevestigator:Q07473
GermOnline:AT5G01530 Uniprot:Q07473
Length = 290
Score = 134 (52.2 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 35/61 (57%), Positives = 39/61 (63%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQ-GKTP 247
YPGGKFFDPL LA D EK +L++AEIKHARLAMVA L F +A GK P
Sbjct: 217 YPGGKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGP 267
Query: 248 L 248
L
Sbjct: 268 L 268
Score = 133 (51.9 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 42/117 (35%), Positives = 59/117 (50%)
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG----ADP----GAIAPFSFGSLLGTQ 144
+RE ELIHGRWAM A +G + +G+ W +AG D G PFS +L+ +
Sbjct: 136 FRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIE 195
Query: 145 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
+L++G++E +R N E S + + YPGGKFFDPL LA
Sbjct: 196 VLVIGYIEFQR-----NAELDSEK------------------RLYPGGKFFDPLGLA 229
Score = 129 (50.5 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 53/174 (30%), Positives = 74/174 (42%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNL 62
AATS A +S I G + + + G+ R T P KKS V L
Sbjct: 2 AATSAAAA---AASSIMGTRVAPGIHPGSGRFTAVFGFGKKKAAP-KKSAKKTVTTDRPL 57
Query: 63 -----INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
I+P+WLDGSL GDYGFDP GLGK +L++ + + + A + G +G
Sbjct: 58 WYPGAISPDWLDGSLVGDYGFDPFGLGKPAEYLQF--DIDSLDQNLAKN-LAGDVIGTRT 114
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 171
+A + P P+S + G Q + RW + SVEW T
Sbjct: 115 EAA---DAKSTP--FQPYS--EVFGIQRFRECELIHGRWAMLATLGALSVEWLT 161
>TAIR|locus:2162540 [details] [associations]
symbol:LHCB3 "light-harvesting chlorophyll B-binding
protein 3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS;IMP] [GO:0016020 "membrane" evidence=IEA] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0005198 "structural
molecule activity" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002688 GO:GO:0005198
EMBL:AB010695 GO:GO:0009535 UniGene:At.49175 GO:GO:0015979
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.32199 UniGene:At.66422
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.70236
UniGene:At.21173 EMBL:AF134126 EMBL:AF143691 EMBL:AF361858
EMBL:AF372917 EMBL:AY057735 IPI:IPI00532626 PIR:T52318
RefSeq:NP_200238.1 ProteinModelPortal:Q9S7M0 SMR:Q9S7M0
STRING:Q9S7M0 PRIDE:Q9S7M0 EnsemblPlants:AT5G54270.1 GeneID:835515
KEGG:ath:AT5G54270 TAIR:At5g54270 InParanoid:Q9S7M0 KO:K08914
OMA:ADDPVTF PhylomeDB:Q9S7M0 Genevestigator:Q9S7M0 Uniprot:Q9S7M0
Length = 265
Score = 139 (54.0 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 34/72 (47%), Positives = 40/72 (55%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDP-AFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP AF K R E+IHGRWAM G V Q W +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPEAFAK-NRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 121 ----P-WFEAGA 127
P WF+AG+
Sbjct: 123 DFKEPVWFKAGS 134
Score = 101 (40.6 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 29/65 (44%), Positives = 35/65 (53%)
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
G YPGG++FDPL LA D LKV EIK+ RLAM +M F+ +A
Sbjct: 184 GNDLYPGGQYFDPLGLAD---------DPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVT 234
Query: 244 GKTPL 248
GK PL
Sbjct: 235 GKGPL 239
Score = 46 (21.3 bits), Expect = 1.2e-16, Sum P(3) = 1.2e-16
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKR 155
+P + S ++LG Q++LMG VE R
Sbjct: 147 NPNLVHAQSILAVLGFQVILMGLVEGFR 174
>TAIR|locus:2200868 [details] [associations]
symbol:LHCA3 "photosystem I light harvesting complex gene
3" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009534 "chloroplast thylakoid"
evidence=IDA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002684
GO:GO:0009535 GO:GO:0010287 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 PDB:2O01 PDBsum:2O01 UniGene:At.2877 EMBL:AC005850
UniGene:At.21403 EMBL:AY059879 EMBL:AY093370 IPI:IPI00532189
PIR:E96640 RefSeq:NP_001185280.1 RefSeq:NP_176347.1
UniGene:At.20472 UniGene:At.71924 UniGene:At.71944
ProteinModelPortal:Q9SY97 SMR:Q9SY97 STRING:Q9SY97 PRIDE:Q9SY97
ProMEX:Q9SY97 EnsemblPlants:AT1G61520.1 EnsemblPlants:AT1G61520.3
GeneID:842446 KEGG:ath:AT1G61520 TAIR:At1g61520 InParanoid:Q9SY97
KO:K08909 OMA:LMGFAEH PhylomeDB:Q9SY97 ProtClustDB:PLN00048
ArrayExpress:Q9SY97 Genevestigator:Q9SY97 Uniprot:Q9SY97
Length = 273
Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
Identities = 73/222 (32%), Positives = 105/222 (47%)
Query: 49 KKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKDP----AFL--KWY 93
K + P VK G N P W LDGSLPGDYGFDPLGL DP F+ +W
Sbjct: 40 KAAATPPVKQGAN--RPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWL 96
Query: 94 REAELIHGRWAMAAVVGIF----VGQAW-----SGIPWFEAGADPGAIAPFSFGSLLGTQ 144
E+I+GR+AM G +G+A + +PWF+ G P A +++ + T
Sbjct: 97 AYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA-GTYTYWADNYTL 155
Query: 145 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN------ATGEQGYPGGKFFDPL 198
+L + + F + +W P S + F +G YPGG FF+PL
Sbjct: 156 FVL------EMALMGFAEHRRLQDWYNPGSMGKQYFLGLEKGLAGSGNPAYPGGPFFNPL 209
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G KD + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 210 ---GFGKD------EKSLKELKLKEVKNGRLAMLAILGYFIQ 242
>TAIR|locus:2097608 [details] [associations]
symbol:LHCB4.2 "light harvesting complex photosystem II"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0009941 "chloroplast
envelope" evidence=IDA] [GO:0009535 "chloroplast thylakoid
membrane" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009637 "response to blue light" evidence=IEP;RCA] [GO:0010114
"response to red light" evidence=IEP;RCA] [GO:0010218 "response to
far red light" evidence=IEP;RCA] [GO:0009534 "chloroplast
thylakoid" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=RCA] [GO:0009644 "response to high light intensity"
evidence=RCA] [GO:0009744 "response to sucrose stimulus"
evidence=RCA] [GO:0010155 "regulation of proton transport"
evidence=RCA] [GO:0015979 "photosynthesis" evidence=RCA]
[GO:0019344 "cysteine biosynthetic process" evidence=RCA]
[GO:0019684 "photosynthesis, light reaction" evidence=RCA]
[GO:0035304 "regulation of protein dephosphorylation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 GO:GO:0016021 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0046872 GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0018298 EMBL:AC010871
GO:GO:0009535 HOGENOM:HOG000238033 GO:GO:0009522 GO:GO:0009523
GO:GO:0016168 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08915
ProtClustDB:PLN00187 EMBL:AF134127 EMBL:AY065140 EMBL:AY081608
IPI:IPI00521901 IPI:IPI00542269 PIR:T52317 RefSeq:NP_187506.1
RefSeq:NP_850545.1 UniGene:At.21828 UniGene:At.22485
UniGene:At.6984 ProteinModelPortal:Q9XF88 SMR:Q9XF88 STRING:Q9XF88
PaxDb:Q9XF88 PRIDE:Q9XF88 ProMEX:Q9XF88 EnsemblPlants:AT3G08940.2
GeneID:820043 KEGG:ath:AT3G08940 TAIR:At3g08940 eggNOG:NOG330021
InParanoid:Q9XF88 OMA:TRFTAWF PhylomeDB:Q9XF88
Genevestigator:Q9XF88 GermOnline:AT3G08940 Uniprot:Q9XF88
Length = 287
Score = 137 (53.3 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 43/120 (35%), Positives = 61/120 (50%)
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG----ADP----GAIAPFSFGSLL 141
L+ +RE ELIHGRWAM A +G + +G+ W +AG D G PFS +L+
Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLI 189
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
++L++G++E +R N E S + + YPGGKFFDPL LA
Sbjct: 190 WIEVLVIGYIEFQR-----NAELDSEK------------------RLYPGGKFFDPLGLA 226
Score = 122 (48.0 bits), Expect = 2.1e-16, Sum P(2) = 2.1e-16
Identities = 33/61 (54%), Positives = 37/61 (60%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQ-GKTP 247
YPGGKFFDPL LA D K +L++AEIKHARLAMV L F +A GK P
Sbjct: 214 YPGGKFFDPLGLAS---------DPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGP 264
Query: 248 L 248
L
Sbjct: 265 L 265
Score = 113 (44.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 37/121 (30%), Positives = 54/121 (44%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 111
W P K +PE+LDGSL GDYGFDP GLGK +L++ + + + A + G
Sbjct: 55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQF--DLDSLDQNLAKN-LYGE 105
Query: 112 FVGQAWSGIPWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWA 170
+G + DP + PF + + G Q + RW + +VEW
Sbjct: 106 VIGTRTEAV-------DPKS-TPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWL 157
Query: 171 T 171
T
Sbjct: 158 T 158
>TAIR|locus:2019287 [details] [associations]
symbol:CAB3 "chlorophyll A/B binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GO:GO:0005739 GO:GO:0046872
GO:GO:0018298 GO:GO:0009535 UniGene:At.49175 GO:GO:0010287
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
IPI:IPI00527705 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 KO:K08912
EMBL:X03908 EMBL:AY065165 EMBL:AY114594 ProteinModelPortal:Q8VZ87
SMR:Q8VZ87 IntAct:Q8VZ87 STRING:Q8VZ87 PaxDb:Q8VZ87 PRIDE:Q8VZ87
TAIR:At1g29910 eggNOG:NOG327854 PhylomeDB:Q8VZ87
Genevestigator:Q8VZ87 GermOnline:AT1G29910 Uniprot:Q8VZ87
Length = 267
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 82/263 (31%), Positives = 111/263 (42%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPA--VKG 58
MAA+T +N + +L G+ RVT P W + VK
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVL-GSGRVTMRKTVAKPKG-PSGSPWYGSDRVKY 58
Query: 59 GGNLI--NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G +P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 118
Query: 116 -AWSGIP-----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
A +G+ WF+AG+ G + SL+ Q +L W + + + E
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIW--ATQVILMGAVEGYR 176
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
V P AE+ YPGG F DPL LA D E LKV E+K+
Sbjct: 177 VAGNGPLGE-AEDLL-------YPGGSF-DPLGLA---------TDPEAFAELKVKELKN 218
Query: 227 ARLAMVAMLIFYFEA-GQGKTPL 248
RLAM +M F+ +A GK P+
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPI 241
>TAIR|locus:2019372 [details] [associations]
symbol:CAB2 "chlorophyll A/B-binding protein 2"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS]
[GO:0016020 "membrane" evidence=IEA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009750
"response to fructose stimulus" evidence=IEP] [GO:0005794 "Golgi
apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
GO:GO:0048046 GO:GO:0009750 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 EMBL:X03907
EMBL:AY052237 EMBL:AY054198 EMBL:AY060500 EMBL:AY062814
EMBL:AY081572 EMBL:AY128345 EMBL:BT000726 EMBL:AY086905
IPI:IPI00527705 PIR:A29280 RefSeq:NP_564339.1 RefSeq:NP_564340.1
UniGene:At.10812 UniGene:At.24351 UniGene:At.27031 UniGene:At.32199
UniGene:At.43708 UniGene:At.66422 UniGene:At.70617 UniGene:At.71449
UniGene:At.71528 UniGene:At.71547 ProteinModelPortal:P0CJ48
SMR:P0CJ48 IntAct:P0CJ48 PRIDE:P0CJ48 DNASU:839869 DNASU:839870
EnsemblPlants:AT1G29910.1 EnsemblPlants:AT1G29920.1 GeneID:839869
GeneID:839870 KEGG:ath:AT1G29910 KEGG:ath:AT1G29920 TAIR:At1g29920
HOGENOM:HOG000238032 KO:K08912 PhylomeDB:P0CJ48 Uniprot:P0CJ48
Length = 267
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 82/263 (31%), Positives = 111/263 (42%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPA--VKG 58
MAA+T +N + +L G+ RVT P W + VK
Sbjct: 1 MAASTMALSSPAFAGKAVNLSPAASEVL-GSGRVTMRKTVAKPKG-PSGSPWYGSDRVKY 58
Query: 59 GGNLI--NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G +P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 59 LGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEL 118
Query: 116 -AWSGIP-----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
A +G+ WF+AG+ G + SL+ Q +L W + + + E
Sbjct: 119 LARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIW--ATQVILMGAVEGYR 176
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
V P AE+ YPGG F DPL LA D E LKV E+K+
Sbjct: 177 VAGNGPLGE-AEDLL-------YPGGSF-DPLGLA---------TDPEAFAELKVKELKN 218
Query: 227 ARLAMVAMLIFYFEA-GQGKTPL 248
RLAM +M F+ +A GK P+
Sbjct: 219 GRLAMFSMFGFFVQAIVTGKGPI 241
>TAIR|locus:2122794 [details] [associations]
symbol:LHCB5 "light harvesting complex of photosystem II
5" species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009533 "chloroplast stromal thylakoid"
evidence=IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0015979 "photosynthesis" evidence=ISS;IMP]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0009783 "photosystem II antenna complex"
evidence=IMP] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0010196
"nonphotochemical quenching" evidence=IMP] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0010218 "response to far red light"
evidence=IEP;RCA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009644 "response
to high light intensity" evidence=RCA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0010155 "regulation of proton
transport" evidence=RCA] [GO:0019344 "cysteine biosynthetic
process" evidence=RCA] [GO:0009517 "PSII associated
light-harvesting complex II" evidence=IDA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0009637 GO:GO:0010218 GO:GO:0010114
GO:GO:0018298 GO:GO:0010287 GO:GO:0015979 EMBL:AL049488
EMBL:AL161517 GO:GO:0009522 GO:GO:0016168 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
EMBL:AF134129 EMBL:AF326900 EMBL:AF339718 EMBL:AF424597
EMBL:AF380631 EMBL:AY054126 EMBL:AY087939 IPI:IPI00535216
PIR:T04049 RefSeq:NP_192772.1 UniGene:At.23060
ProteinModelPortal:Q9XF89 SMR:Q9XF89 DIP:DIP-59004N STRING:Q9XF89
PaxDb:Q9XF89 PRIDE:Q9XF89 EnsemblPlants:AT4G10340.1 GeneID:826626
KEGG:ath:AT4G10340 TAIR:At4g10340 eggNOG:NOG321165
InParanoid:Q9XF89 KO:K08916 OMA:EGPVENL PhylomeDB:Q9XF89
ProtClustDB:CLSN2685679 Genevestigator:Q9XF89 GermOnline:AT4G10340
GO:GO:0009783 GO:GO:0009517 GO:GO:0010196 Uniprot:Q9XF89
Length = 280
Score = 155 (59.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 33/77 (42%), Positives = 44/77 (57%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G + GDYG+DP GLGK P Y+ ELIH RWAM G + +A + +
Sbjct: 82 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK---YG 138
Query: 125 AGADPGAIAPFSFGSLL 141
A P A+ F G+LL
Sbjct: 139 ANCGPEAVW-FKTGALL 154
Score = 89 (36.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 30/59 (50%), Positives = 36/59 (61%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA---GQG 244
+PGG F DPL LA KD P+ L LKV EIK+ RLAM AML F+ +A G+G
Sbjct: 201 HPGGPF-DPLGLA---KD----PEQGAL--LKVKEIKNGRLAMFAMLGFFIQAYVTGEG 249
>UNIPROTKB|P12331 [details] [associations]
symbol:CAB2R "Chlorophyll a-b binding protein 2,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511 KO:K08912
OMA:SSGIEFY ProtClustDB:PLN00025 eggNOG:NOG322441 EMBL:X13909
EMBL:AP003278 EMBL:AK121563 PIR:S03706 RefSeq:NP_001043493.1
UniGene:Os.79136 ProteinModelPortal:P12331 SMR:P12331 STRING:P12331
EnsemblPlants:LOC_Os01g41710.1 GeneID:4324599
KEGG:dosa:Os01t0600900-02 KEGG:dosa:Os03t0165375-00
KEGG:dosa:Os06t0484450-00 KEGG:osa:4324599 Gramene:P12331
Uniprot:P12331
Length = 261
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 86/263 (32%), Positives = 107/263 (40%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPA--VKG 58
MAAAT L S + G K+ A + G R+T W A V
Sbjct: 1 MAAATMA-----LSSPALAG--KAAAKVFGEGRITMRKSAAKPKPAASGSPWYGADRVLY 53
Query: 59 GGNLIN--PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G L P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 54 LGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 113
Query: 116 -AWSGIP-----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
A +G+ WF+AG+ G + SL+ Q +L W V
Sbjct: 114 LARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ---VVLMG----- 165
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
A R A + YPGG F DPL LA D E LKV EIK+
Sbjct: 166 ---AVEGYRIAGGPLGEVVDPLYPGGSF-DPLGLAD---------DPEAFAELKVKEIKN 212
Query: 227 ARLAMVAMLIFYFEA-GQGKTPL 248
RLAM +M F+ +A GK PL
Sbjct: 213 GRLAMFSMFGFFVQAIVTGKGPL 235
>TAIR|locus:2040934 [details] [associations]
symbol:LHB1B2 "photosystem II light harvesting complex
gene B1B2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0009769 "photosynthesis, light
harvesting in photosystem II" evidence=TAS] [GO:0016020 "membrane"
evidence=IEA;IDA] [GO:0016168 "chlorophyll binding"
evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0015979 "photosynthesis" evidence=ISS] [GO:0010287
"plastoglobule" evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA]
[GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.32199
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025
UniGene:At.23647 UniGene:At.27457 UniGene:At.24064 UniGene:At.24888
EMBL:AF372886 EMBL:AY039561 EMBL:AY045806 EMBL:AF428397
EMBL:AF419548 EMBL:AF419587 EMBL:AY065125 EMBL:AY079101
EMBL:AY079110 EMBL:AY081587 EMBL:AY142513 EMBL:AK229627 EMBL:X64460
IPI:IPI00530785 PIR:S23546 RefSeq:NP_565786.1 UniGene:At.71003
UniGene:At.71384 ProteinModelPortal:Q39141 SMR:Q39141 IntAct:Q39141
STRING:Q39141 PRIDE:Q39141 EnsemblPlants:AT2G34420.1 GeneID:818005
KEGG:ath:AT2G34420 TAIR:At2g34420 InParanoid:Q39141
PhylomeDB:Q39141 ArrayExpress:Q39141 Genevestigator:Q39141
Uniprot:Q39141
Length = 265
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 68/195 (34%), Positives = 89/195 (45%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
WF+AG+ G + SL+ Q +L W + + + E V P
Sbjct: 125 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIW--ATQVILMGAVEGYRVAGDGPLG 182
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
AE+ YPGG F DPL LA D E LKV E+K+ RLAM +M
Sbjct: 183 E-AEDLL-------YPGGSF-DPLGLA---------TDPEAFAELKVKELKNGRLAMFSM 224
Query: 235 LIFYFEA-GQGKTPL 248
F+ +A GK PL
Sbjct: 225 FGFFVQAIVTGKGPL 239
>TAIR|locus:2040944 [details] [associations]
symbol:LHB1B1 "light-harvesting chlorophyll-protein
complex II subunit B1" species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0009769
"photosynthesis, light harvesting in photosystem II" evidence=TAS]
[GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168 "chlorophyll
binding" evidence=ISS;TAS] [GO:0030076 "light-harvesting complex"
evidence=ISS] [GO:0042651 "thylakoid membrane" evidence=TAS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009535
"chloroplast thylakoid membrane" evidence=IDA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0010287 "plastoglobule"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] InterPro:IPR001344 Pfam:PF00504 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009535 GO:GO:0010287
EMBL:AC004077 EMBL:AC004481 GO:GO:0009765 Gene3D:1.10.3460.10
InterPro:IPR022796 InterPro:IPR023329 PANTHER:PTHR21649
SUPFAM:SSF103511 UniGene:At.10812 UniGene:At.24351 UniGene:At.66422
UniGene:At.71449 UniGene:At.71528 HOGENOM:HOG000238032 KO:K08912
ProtClustDB:PLN00025 UniGene:At.22980 UniGene:At.71384
EMBL:AF326864 EMBL:AF339687 EMBL:AY120776 EMBL:BT002103 EMBL:X64459
IPI:IPI00535697 PIR:S25677 RefSeq:NP_565787.1 UniGene:At.67299
UniGene:At.71696 ProteinModelPortal:Q39142 SMR:Q39142 STRING:Q39142
PRIDE:Q39142 EnsemblPlants:AT2G34430.1 GeneID:818006
KEGG:ath:AT2G34430 TAIR:At2g34430 InParanoid:Q39142 OMA:RITMRKA
PhylomeDB:Q39142 ArrayExpress:Q39142 Genevestigator:Q39142
Uniprot:Q39142
Length = 266
Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 68/195 (34%), Positives = 89/195 (45%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
WF+AG+ G + SL+ Q +L W + + + E V P
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIW--ATQVILMGAVEGYRVAGDGPLG 183
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
AE+ YPGG F DPL LA D E LKV E+K+ RLAM +M
Sbjct: 184 E-AEDLL-------YPGGSF-DPLGLA---------TDPEAFAELKVKELKNGRLAMFSM 225
Query: 235 LIFYFEA-GQGKTPL 248
F+ +A GK PL
Sbjct: 226 FGFFVQAIVTGKGPL 240
>TAIR|locus:2019322 [details] [associations]
symbol:CAB1 "chlorophyll A/B binding protein 1"
species:3702 "Arabidopsis thaliana" [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0009765 "photosynthesis, light harvesting"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS;TAS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009535 "chloroplast
thylakoid membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0015979
"photosynthesis" evidence=ISS] InterPro:IPR001344 Pfam:PF00504
GO:GO:0016021 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0046872
UniGene:At.23809 GO:GO:0018298 GO:GO:0009535 UniGene:At.49175
EMBL:AC008030 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
UniGene:At.10812 UniGene:At.24351 UniGene:At.32199 UniGene:At.43708
UniGene:At.66422 UniGene:At.71449 UniGene:At.71528
HOGENOM:HOG000238032 KO:K08912 eggNOG:NOG327854
GermOnline:AT1G29910 EMBL:X03909 EMBL:AF428359 EMBL:AY045673
EMBL:AY050935 EMBL:AY058180 EMBL:AY091169 EMBL:X15221 EMBL:X15222
EMBL:Z17799 IPI:IPI00547631 PIR:A86423 RefSeq:NP_174286.1
UniGene:At.19140 UniGene:At.48174 UniGene:At.71551
ProteinModelPortal:P04778 SMR:P04778 IntAct:P04778 STRING:P04778
PaxDb:P04778 PRIDE:P04778 ProMEX:P04778 EnsemblPlants:AT1G29930.1
GeneID:839871 KEGG:ath:AT1G29930 TAIR:At1g29930 InParanoid:P04778
OMA:SSGIEFY PhylomeDB:P04778 ProtClustDB:PLN00025
Genevestigator:P04778 Uniprot:P04778
Length = 267
Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
Identities = 67/196 (34%), Positives = 90/196 (45%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
WF+AG+ G + SL+ Q +L W + + + E V P
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIW--ATQVILMGAVEGYRVAGNGPL 183
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
AE+ YPGG F DPL LA D E LKV E+K+ RLAM +
Sbjct: 184 GE-AEDLL-------YPGGSF-DPLGLA---------TDPEAFAELKVKELKNGRLAMFS 225
Query: 234 MLIFYFEA-GQGKTPL 248
M F+ +A GK P+
Sbjct: 226 MFGFFVQAIVTGKGPI 241
>UNIPROTKB|P12330 [details] [associations]
symbol:CAB1R "Chlorophyll a-b binding protein 1,
chloroplastic" species:39947 "Oryza sativa Japonica Group"
[GO:0009535 "chloroplast thylakoid membrane" evidence=ISS]
[GO:0015979 "photosynthesis" evidence=ISS] InterPro:IPR001344
Pfam:PF00504 GO:GO:0016021 GO:GO:0005739 GO:GO:0046872
GO:GO:0048046 GO:GO:0009941 GO:GO:0009637 GO:GO:0010218
GO:GO:0010114 GO:GO:0018298 GO:GO:0009535 GO:GO:0010287
GO:GO:0015979 GO:GO:0009522 GO:GO:0009523 GO:GO:0016168
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 KO:K08912 ProtClustDB:PLN00025 EMBL:X13908
EMBL:D00641 EMBL:AP005313 EMBL:AP005700 EMBL:AK060851 PIR:A44956
PIR:S03705 RefSeq:NP_001062939.1 UniGene:Os.7941
ProteinModelPortal:P12330 SMR:P12330 STRING:P12330
EnsemblPlants:LOC_Os09g17740.1 GeneID:4346803
KEGG:dosa:Os09t0346500-04 KEGG:osa:4346803 Gramene:P12330
eggNOG:NOG322441 OMA:GEARITM Uniprot:P12330
Length = 265
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 68/195 (34%), Positives = 85/195 (43%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGAD---PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
WF+AG+ G + SL+ Q +L W V A
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQ---VVLMG--------AVEGY 174
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
R A + YPGG F DPL LA D E LKV EIK+ RLAM +M
Sbjct: 175 RIAGGPLGEVVDPLYPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSM 224
Query: 235 LIFYFEA-GQGKTPL 248
F+ +A GK PL
Sbjct: 225 FGFFVQAIVTGKGPL 239
>TAIR|locus:2011691 [details] [associations]
symbol:AT1G76570 species:3702 "Arabidopsis thaliana"
[GO:0009507 "chloroplast" evidence=ISM] [GO:0009765
"photosynthesis, light harvesting" evidence=IEA] [GO:0015979
"photosynthesis" evidence=ISS] [GO:0016020 "membrane" evidence=IEA]
[GO:0016168 "chlorophyll binding" evidence=ISS] [GO:0030076
"light-harvesting complex" evidence=ISS] [GO:0009637 "response to
blue light" evidence=IEP] [GO:0010218 "response to far red light"
evidence=IEP] [GO:0010264 "myo-inositol hexakisphosphate
biosynthetic process" evidence=RCA] [GO:0015996 "chlorophyll
catabolic process" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009507 GO:GO:0016020
GO:GO:0009637 GO:GO:0010218 EMBL:AC015450 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
IPI:IPI00528080 PIR:G96793 RefSeq:NP_177783.1 UniGene:At.34640
ProteinModelPortal:Q9C9K1 SMR:Q9C9K1 PaxDb:Q9C9K1 PRIDE:Q9C9K1
EnsemblPlants:AT1G76570.1 GeneID:843990 KEGG:ath:AT1G76570
TAIR:At1g76570 eggNOG:NOG237807 InParanoid:Q9C9K1 KO:K14172
OMA:DYGFDIA PhylomeDB:Q9C9K1 ProtClustDB:PLN00171
Genevestigator:Q9C9K1 Uniprot:Q9C9K1
Length = 327
Score = 136 (52.9 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 25/53 (47%), Positives = 32/53 (60%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
P +L G LPGDYGFD GLGKD Y E++H RWAM A +G + + +
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVF 175
Score = 111 (44.1 bits), Expect = 7.5e-15, Sum P(2) = 7.5e-15
Identities = 32/65 (49%), Positives = 38/65 (58%)
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-Q 243
G+ YPGG FDPL L+ +D V D LKV EIK+ RLAMVA L FY +A
Sbjct: 251 GDINYPGGTLFDPLNLS---EDPVAFED------LKVKEIKNGRLAMVAWLGFYAQAAFT 301
Query: 244 GKTPL 248
GK P+
Sbjct: 302 GKGPV 306
>TAIR|locus:2044988 [details] [associations]
symbol:LHCB2.2 "photosystem II light harvesting complex
gene 2.2" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009534 "chloroplast thylakoid" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] InterPro:IPR001344
Pfam:PF00504 GO:GO:0005774 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0009941 GO:GO:0009535 GO:GO:0010287 GO:GO:0009765
Gene3D:1.10.3460.10 InterPro:IPR022796 InterPro:IPR023329
PANTHER:PTHR21649 SUPFAM:SSF103511 HOGENOM:HOG000238032
ProtClustDB:PLN00025 EMBL:AC007211 EMBL:AF134123 EMBL:AY054218
EMBL:AY062563 EMBL:AY066036 EMBL:AY093372 IPI:IPI00542481
PIR:T52324 RefSeq:NP_178582.1 UniGene:At.48420 UniGene:At.63397
UniGene:At.72525 ProteinModelPortal:Q9S7J7 SMR:Q9S7J7 IntAct:Q9S7J7
STRING:Q9S7J7 PaxDb:Q9S7J7 PRIDE:Q9S7J7 ProMEX:Q9S7J7
EnsemblPlants:AT2G05070.1 GeneID:815055 KEGG:ath:AT2G05070
TAIR:At2g05070 eggNOG:NOG312402 InParanoid:Q9S7J7 KO:K08913
OMA:AFATKYT PhylomeDB:Q9S7J7 ArrayExpress:Q9S7J7
Genevestigator:Q9S7J7 Uniprot:Q9S7J7
Length = 265
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 59/185 (31%), Positives = 78/185 (42%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S +
Sbjct: 66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS-----K 120
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
G G F GS Q+ G ++ + + +S WA F
Sbjct: 121 NGVKFGEAVWFKAGS----QIFSEGGLDYLGNPNLIHAQSILAIWAV--QVVLMGFIEGY 174
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
G P G+ DPL G D E LKV E+K+ RLAM +M F+ +A
Sbjct: 175 RIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVT 234
Query: 244 GKTPL 248
GK P+
Sbjct: 235 GKGPI 239
>TAIR|locus:2042148 [details] [associations]
symbol:LHCB2.1 "photosystem II light harvesting complex
gene 2.1" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0010287 "plastoglobule" evidence=IDA] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009637 "response to blue light"
evidence=IEP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0005794
"Golgi apparatus" evidence=RCA] InterPro:IPR001344 Pfam:PF00504
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009941 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 GO:GO:0009535 GO:GO:0010287
GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.48420
UniGene:At.63397 KO:K08913 EMBL:AC007443 EMBL:AY052275
EMBL:AY052348 EMBL:BT001933 IPI:IPI00535929 RefSeq:NP_178585.1
ProteinModelPortal:Q9SHR7 SMR:Q9SHR7 STRING:Q9SHR7 PRIDE:Q9SHR7
EnsemblPlants:AT2G05100.1 GeneID:815058 KEGG:ath:AT2G05100
TAIR:At2g05100 InParanoid:Q9SHR7 OMA:MAASAIQ PhylomeDB:Q9SHR7
ArrayExpress:Q9SHR7 Genevestigator:Q9SHR7 Uniprot:Q9SHR7
Length = 265
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 59/185 (31%), Positives = 78/185 (42%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S +
Sbjct: 66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS-----K 120
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
G G F GS Q+ G ++ + + +S WA F
Sbjct: 121 NGVKFGEAVWFKAGS----QIFSEGGLDYLGNPNLIHAQSILAIWAV--QVVLMGFIEGY 174
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
G P G+ DPL G D E LKV E+K+ RLAM +M F+ +A
Sbjct: 175 RIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVT 234
Query: 244 GKTPL 248
GK P+
Sbjct: 235 GKGPI 239
>TAIR|locus:2089139 [details] [associations]
symbol:LHCB2.3 "photosystem II light harvesting complex
gene 2.3" species:3702 "Arabidopsis thaliana" [GO:0009507
"chloroplast" evidence=ISM] [GO:0009765 "photosynthesis, light
harvesting" evidence=IEA] [GO:0015979 "photosynthesis"
evidence=ISS] [GO:0016020 "membrane" evidence=IEA] [GO:0016168
"chlorophyll binding" evidence=ISS] [GO:0030076 "light-harvesting
complex" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009535 "chloroplast thylakoid membrane"
evidence=IDA] [GO:0009579 "thylakoid" evidence=IDA] [GO:0009637
"response to blue light" evidence=IEP;RCA] [GO:0010114 "response to
red light" evidence=IEP;RCA] [GO:0010218 "response to far red
light" evidence=IEP;RCA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009644 "response to high light intensity" evidence=RCA]
[GO:0009744 "response to sucrose stimulus" evidence=RCA]
[GO:0010155 "regulation of proton transport" evidence=RCA]
[GO:0042631 "cellular response to water deprivation" evidence=RCA]
InterPro:IPR001344 Pfam:PF00504 EMBL:CP002686 GO:GO:0009941
GO:GO:0009637 GO:GO:0010218 GO:GO:0010114 GO:GO:0009535
EMBL:AB018114 GO:GO:0009765 Gene3D:1.10.3460.10 InterPro:IPR022796
InterPro:IPR023329 PANTHER:PTHR21649 SUPFAM:SSF103511
HOGENOM:HOG000238032 ProtClustDB:PLN00025 UniGene:At.63397
KO:K08913 EMBL:AF134125 EMBL:AF370557 EMBL:BT006298 IPI:IPI00549108
PIR:T52322 RefSeq:NP_189406.1 UniGene:At.71997 UniGene:At.8025
ProteinModelPortal:Q9XF87 SMR:Q9XF87 STRING:Q9XF87 PRIDE:Q9XF87
EnsemblPlants:AT3G27690.1 GeneID:822391 KEGG:ath:AT3G27690
TAIR:At3g27690 InParanoid:Q9XF87 OMA:QHSSFAG PhylomeDB:Q9XF87
Genevestigator:Q9XF87 Uniprot:Q9XF87
Length = 266
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 59/185 (31%), Positives = 78/185 (42%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S +
Sbjct: 67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS-----K 121
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
G G F GS Q+ G ++ + + +S WA F
Sbjct: 122 NGVKFGEAVWFKAGS----QIFSEGGLDYLGNPNLIHAQSILAIWAC--QVVLMGFIEGY 175
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
G P G+ DPL G D E LKV E+K+ RLAM +M F+ +A
Sbjct: 176 RIGGGPLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVT 235
Query: 244 GKTPL 248
GK P+
Sbjct: 236 GKGPI 240
>TAIR|locus:2056815 [details] [associations]
symbol:AT2G03850 "AT2G03850" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009793 "embryo development ending
in seed dormancy" evidence=ISS] EMBL:CP002685
GenomeReviews:CT485783_GR EMBL:AC007196 HOGENOM:HOG000093206
ProtClustDB:CLSN2683926 EMBL:BT003719 EMBL:AK118520 IPI:IPI00524779
PIR:A84453 RefSeq:NP_565306.1 UniGene:At.41366 PaxDb:Q9SI55
PRIDE:Q9SI55 EnsemblPlants:AT2G03850.1 GeneID:814911
KEGG:ath:AT2G03850 TAIR:At2g03850 eggNOG:NOG250037 OMA:MAMSISG
PhylomeDB:Q9SI55 ArrayExpress:Q9SI55 Genevestigator:Q9SI55
Uniprot:Q9SI55
Length = 191
Score = 127 (49.8 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 35/73 (47%), Positives = 42/73 (57%)
Query: 1 MAAATSGAVLNGLGSSF-INGGKKSQALLAGTNRVTXXXXXXXXXXLPP-KKSWIP-AVK 57
MA + SGAV NGLGSSF I+ GK+S G V P KKSW+P AVK
Sbjct: 1 MAMSISGAVFNGLGSSFLISRGKRSGV---GLGVVAMRVGRKNVITSPKCKKSWVPTAVK 57
Query: 58 GGGNL-INPEWLD 69
G GN ++P+WLD
Sbjct: 58 GDGNSKLDPKWLD 70
>TAIR|locus:2044194 [details] [associations]
symbol:AT2G03740 "AT2G03740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] [GO:0009793 "embryo development ending
in seed dormancy" evidence=ISS] [GO:0010584 "pollen exine
formation" evidence=RCA] EMBL:CP002685 EMBL:AC006836
ProtClustDB:CLSN2683926 EMBL:AY087757 EMBL:DQ446464 EMBL:BT025749
IPI:IPI00527273 PIR:G84451 RefSeq:NP_178469.1 UniGene:At.41376
PRIDE:Q9ZPQ7 EnsemblPlants:AT2G03740.1 GeneID:814901
KEGG:ath:AT2G03740 TAIR:At2g03740 OMA:MERAKDY PhylomeDB:Q9ZPQ7
ArrayExpress:Q9ZPQ7 Genevestigator:Q9ZPQ7 Uniprot:Q9ZPQ7
Length = 189
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 32/67 (47%), Positives = 39/67 (58%)
Query: 6 SGAVLNGLGSSF-INGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPA-VKGGGNLI 63
SGAVL+GLG SF I+GGK+S + G +V KKSW+ A VKG GN
Sbjct: 4 SGAVLSGLGPSFLISGGKRS-GVGGGAMKVGRKNVIIAPQR---KKSWVSAAVKGAGNSP 59
Query: 64 N-PEWLD 69
N P+WLD
Sbjct: 60 NDPKWLD 66
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.139 0.448 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 253 243 0.00097 113 3 11 22 0.45 33
32 0.45 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 612 (65 KB)
Total size of DFA: 202 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.01u 0.11s 19.12t Elapsed: 00:00:01
Total cpu time: 19.01u 0.11s 19.12t Elapsed: 00:00:01
Start: Fri May 10 08:12:59 2013 End: Fri May 10 08:13:00 2013