BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025421
(253 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|270308992|dbj|BAI52949.1| light-harvesting complex II protein [Citrullus lanatus subsp.
vulgaris]
Length = 255
Score = 449 bits (1155), Expect = e-124, Method: Compositional matrix adjust.
Identities = 224/254 (88%), Positives = 234/254 (92%), Gaps = 3/254 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTN---RVTSSKKSVVVAALPPKKSWIPAVKGG 59
AATSG VLNGLGS F+ GG ++Q LLAG V S+K VVVAA PKKSWIPAVKGG
Sbjct: 2 AATSGTVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVVVAAAQPKKSWIPAVKGG 61
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
GNLI+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 62 GNLIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121
Query: 120 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ+VEWATPW RTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQAVEWATPWLRTAEN 181
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
FAN TGEQGYPGGKFFDPL AGTIKDGVYIPDTEKL+RLK+AEIKHAR+AM+AMLIFYF
Sbjct: 182 FANTTGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFYF 241
Query: 240 EAGQGKTPLGALGL 253
EAGQGKTPLGALGL
Sbjct: 242 EAGQGKTPLGALGL 255
>gi|255585659|ref|XP_002533515.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526625|gb|EEF28871.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 256
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 227/257 (88%), Positives = 239/257 (92%), Gaps = 5/257 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA--GTNRVTS--SKKSVVVAALPPKKSWIPAV 56
MAAATSGAVLNGLGSSF+ G K+S ALL+ G NR S S K VV+AA PKKSWIPAV
Sbjct: 1 MAAATSGAVLNGLGSSFLRGPKRSHALLSAIGANRTASGASTKFVVMAA-QPKKSWIPAV 59
Query: 57 KGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
KGGGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 60 KGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVIGIFVGQA 119
Query: 117 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
WSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRWVDFFNP+SQSVEWATPWSRT
Sbjct: 120 WSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSRT 179
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
+ENFANATGEQGYPGGKFFDPL AGT+KDGVYIPD EKL+RLKVAEIKHARLAM+AMLI
Sbjct: 180 SENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLAMLAMLI 239
Query: 237 FYFEAGQGKTPLGALGL 253
FYFEAGQGKTPLGALGL
Sbjct: 240 FYFEAGQGKTPLGALGL 256
>gi|356525886|ref|XP_003531552.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Glycine max]
Length = 261
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/261 (84%), Positives = 241/261 (92%), Gaps = 8/261 (3%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-------GTNRVT-SSKKSVVVAALPPKKSW 52
MAAATSGAVLNGLGSSF++GG +SQ LLA G VT S ++ +VVAA PKKSW
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKSW 60
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 120
Query: 113 VGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
VGQAWSG+PWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFFNP+SQSVEWATP
Sbjct: 121 VGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATP 180
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
WSRT+ENFANATGEQGYPGGKFFDPL LAGTIKDGVYIPDTEKL+RLK+AEIKHAR+AM+
Sbjct: 181 WSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIKHARIAML 240
Query: 233 AMLIFYFEAGQGKTPLGALGL 253
AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261
>gi|224054274|ref|XP_002298178.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118486723|gb|ABK95197.1| unknown [Populus trichocarpa]
gi|222845436|gb|EEE82983.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/256 (87%), Positives = 240/256 (93%), Gaps = 5/256 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLA-GTNRVTS----SKKSVVVAALPPKKSWIPAVK 57
AAT+GAVLNGLGSSF+ GGK++QALL G +R S ++K VVVAA PKKSWIPAVK
Sbjct: 2 AATAGAVLNGLGSSFLCGGKRNQALLGIGASRTGSFPVGTRKLVVVAAAQPKKSWIPAVK 61
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGG+L++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 62 GGGSLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 121
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS+TA
Sbjct: 122 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTA 181
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
ENFANATG+QGYPGGKFFDPL AGT+KDGVYIPD EKL+RLKVAEIKHARLAMVAMLIF
Sbjct: 182 ENFANATGDQGYPGGKFFDPLGFAGTLKDGVYIPDVEKLERLKVAEIKHARLAMVAMLIF 241
Query: 238 YFEAGQGKTPLGALGL 253
YFEAGQGKTPLGALGL
Sbjct: 242 YFEAGQGKTPLGALGL 257
>gi|110377772|gb|ABG73416.1| chloroplast pigment-binding protein CP24 [Nicotiana tabacum]
Length = 257
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 221/256 (86%), Positives = 234/256 (91%), Gaps = 5/256 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALL-----AGTNRVTSSKKSVVVAALPPKKSWIPAVK 57
A TS AVLNGL SSF+ GGK SQALL A + + K+ +V AA PKKSWIPAVK
Sbjct: 2 ATTSAAVLNGLSSSFLTGGKNSQALLGAPVAARIGGLATPKRCIVAAAAAPKKSWIPAVK 61
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 62 GGGNLLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 121
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS+TA
Sbjct: 122 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSKTA 181
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
ENFAN TGEQGYPGGKFFDPL LAGT++DGVYIPDTEKL+RLKVAEIKHARLAM+AMLIF
Sbjct: 182 ENFANFTGEQGYPGGKFFDPLSLAGTLQDGVYIPDTEKLERLKVAEIKHARLAMLAMLIF 241
Query: 238 YFEAGQGKTPLGALGL 253
YFEAGQGKTPLGALGL
Sbjct: 242 YFEAGQGKTPLGALGL 257
>gi|449446427|ref|XP_004140973.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
gi|449497079|ref|XP_004160305.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Cucumis sativus]
Length = 255
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 219/254 (86%), Positives = 233/254 (91%), Gaps = 3/254 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTN---RVTSSKKSVVVAALPPKKSWIPAVKGG 59
AATSGAVL GLGS F+ G +++ LLAG V SS K V+VAA PKKSW+P V+GG
Sbjct: 2 AATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRGG 61
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
GNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG
Sbjct: 62 GNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 121
Query: 120 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN
Sbjct: 122 IPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 181
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
FANATGEQGYPGGKFFDPL AGT+KDGVYI DTEKL+RLK+AEIKHAR+AM+AMLIFYF
Sbjct: 182 FANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYF 241
Query: 240 EAGQGKTPLGALGL 253
EAGQGKTPLGALGL
Sbjct: 242 EAGQGKTPLGALGL 255
>gi|8954298|gb|AAD27882.2|AF139470_1 chlorophyll a/b-binding protein CP24 precursor [Vigna radiata]
Length = 258
Score = 442 bits (1138), Expect = e-122, Method: Compositional matrix adjust.
Identities = 217/258 (84%), Positives = 238/258 (92%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGT-----NRVTSSKKSVVVAALPPKKSWIPA 55
MAAATSGAVLNGLGSSF++GG +SQ LLA + S ++ +VVAA PKKSWIP
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGSRSQTLLATSIGGKVGVAVSPRRLIVVAAAAPKKSWIPG 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
V+GGGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 61 VRGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQL+LMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 121 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFANATGEQGYPGGKFFDPL AGT+KDGVYIPDTEKL+RLK+AEIKHAR+AM+AML
Sbjct: 181 TAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|224070503|ref|XP_002303160.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
gi|118487218|gb|ABK95437.1| unknown [Populus trichocarpa]
gi|118489807|gb|ABK96703.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222840592|gb|EEE78139.1| light-harvesting complex II protein Lhcb6 [Populus trichocarpa]
Length = 257
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/256 (84%), Positives = 235/256 (91%), Gaps = 5/256 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLA-GTNRVTS----SKKSVVVAALPPKKSWIPAVK 57
AA SGAVLNGLGSSF+ GGK+S+AL G + S ++K +VAA PKKSWIPAVK
Sbjct: 2 AAASGAVLNGLGSSFLCGGKRSRALSGIGATGIGSCSVGARKLTIVAAAQPKKSWIPAVK 61
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW
Sbjct: 62 GGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 121
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
SGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRWVDFFNPESQSVEWATPWS+TA
Sbjct: 122 SGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPESQSVEWATPWSKTA 181
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
ENFANATG+QGYPGGKFFDPL AGT+K+GVYIPD EKL+RLK+AEIKHARLAM+AMLIF
Sbjct: 182 ENFANATGDQGYPGGKFFDPLGFAGTLKNGVYIPDEEKLERLKLAEIKHARLAMIAMLIF 241
Query: 238 YFEAGQGKTPLGALGL 253
YFEAGQGKTPLGALGL
Sbjct: 242 YFEAGQGKTPLGALGL 257
>gi|357445799|ref|XP_003593177.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
gi|355482225|gb|AES63428.1| Chloroplast chlorophyll a/b-binding protein CP24 [Medicago
truncatula]
Length = 261
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/261 (83%), Positives = 238/261 (91%), Gaps = 8/261 (3%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGT------NRVTSSKKSVVVAALP--PKKSW 52
MAAATSGAVLNGLGSSF++GGK+SQ LLA T S K ++VAA PKKSW
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGKRSQTLLATTAIGAKVGVAAGSPKRLIVAAAASAPKKSW 60
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
IP V+ GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF
Sbjct: 61 IPGVRFGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 120
Query: 113 VGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
VGQAWSG+PWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFFNP+SQS+EWATP
Sbjct: 121 VGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSIEWATP 180
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
WS+TAENFANATGEQGYPGGKFFDPL LAGTI++GVYIPDTEKL+RLK+AEIKHARLAM+
Sbjct: 181 WSKTAENFANATGEQGYPGGKFFDPLSLAGTIENGVYIPDTEKLERLKLAEIKHARLAML 240
Query: 233 AMLIFYFEAGQGKTPLGALGL 253
AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261
>gi|356524850|ref|XP_003531041.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 1 [Glycine max]
gi|356524852|ref|XP_003531042.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like isoform 2 [Glycine max]
Length = 258
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/258 (82%), Positives = 230/258 (89%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGT-----NRVTSSKKSVVVAALPPKKSWIPA 55
MAAATS AVLNG GS F+ GGK+S ALLA + S K+ +V A PKKSWIPA
Sbjct: 1 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGG+ I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQ
Sbjct: 61 VKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 121 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENF N+TGEQGYPGGKFFDPL AG IKDGVYIPD +KL+RLK+AEIKHAR+AM+AML
Sbjct: 181 TAENFGNSTGEQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAMLAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|356512075|ref|XP_003524746.1| PREDICTED: LOW QUALITY PROTEIN: chlorophyll a-b binding protein
CP24 10A, chloroplastic-like [Glycine max]
Length = 258
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/258 (83%), Positives = 230/258 (89%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAG-----TNRVTSSKKSVVVAALPPKKSWIPA 55
MAAATS AVLNG GS F+ GGK+S ALLA V S + +V A PKKSWIPA
Sbjct: 1 MAAATSSAVLNGFGSHFLCGGKRSHALLAAGIGGKVGAVVSPXRVIVAVAAAPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGN I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQ
Sbjct: 61 VKGGGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWSR
Sbjct: 121 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSR 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENF N+TGEQGYPGGKFFDPL AGTIKDGVYIPDT+KL+RLK+ EIKHAR+AM+AML
Sbjct: 181 TAENFGNSTGEQGYPGGKFFDPLGFAGTIKDGVYIPDTDKLERLKLTEIKHARIAMLAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|388506818|gb|AFK41475.1| unknown [Lotus japonicus]
Length = 260
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/258 (83%), Positives = 233/258 (90%), Gaps = 6/258 (2%)
Query: 2 AAATSGAVLNGLGSSFINGGKKSQALLAGTNR------VTSSKKSVVVAALPPKKSWIPA 55
AAATSGAVLNGLGSSF+ GG +SQ LLA V+ + V AA PKKSWIPA
Sbjct: 3 AAATSGAVLNGLGSSFLCGGNRSQTLLASAAGAKAGAAVSPKRLIVAAAAAAPKKSWIPA 62
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 63 VKGGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 122
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQL+LMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 123 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPWSK 182
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFAN TG+QGYPGGKFFDPL LAGT++DGVYIPD EKL+RLK+AEIKHARLAM+AML
Sbjct: 183 TAENFANYTGDQGYPGGKFFDPLALAGTLQDGVYIPDKEKLERLKLAEIKHARLAMLAML 242
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 243 IFYFEAGQGKTPLGALGL 260
>gi|255646598|gb|ACU23773.1| unknown [Glycine max]
Length = 258
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/258 (81%), Positives = 228/258 (88%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGT-----NRVTSSKKSVVVAALPPKKSWIPA 55
MAAATS AVLNG GS F+ GGK+S ALLA + S K+ +V A PKKSWIPA
Sbjct: 1 MAAATSSAVLNGFGSHFLCGGKRSHALLAASIGGKVGASVSPKRVIVAVAAAPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGG+ I+PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQ
Sbjct: 61 VKGGGSFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+S SVEWATPWS+
Sbjct: 121 AWSGVPWFEAGADPNAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSLSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENF N+TGEQGYPGGKFFDPL AG IKDGVYIPD +KL+RLK+AEIKHAR+AM+AML
Sbjct: 181 TAENFGNSTGEQGYPGGKFFDPLGFAGAIKDGVYIPDADKLERLKLAEIKHARIAMLAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGA GL
Sbjct: 241 IFYFEAGQGKTPLGAFGL 258
>gi|115834|sp|P27525.1|CB4B_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10B,
chloroplastic; Short=CAB-10B; Short=LHCP; Flags:
Precursor
gi|170400|gb|AAA34146.1| chlorophyll b-binding protein [Solanum lycopersicum]
Length = 256
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/256 (82%), Positives = 234/256 (91%), Gaps = 3/256 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTSSKK-SVVVAALPPKKSWIPAVK 57
M ++ AVLNGL SSF+ GGKK+QALL T RVT+ K+ V AA+ PKKSWIPAVK
Sbjct: 1 MTTTSATAVLNGLSSSFLTGGKKTQALLGAHVTARVTTPKRFVVAAAAVAPKKSWIPAVK 60
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 61 SGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 120
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+TA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKTA 180
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
ENFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLK+AEIKH+RLAM+AMLIF
Sbjct: 181 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLIF 240
Query: 238 YFEAGQGKTPLGALGL 253
YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 256
>gi|115833|sp|P27524.1|CB4A_SOLLC RecName: Full=Chlorophyll a-b binding protein CP24 10A,
chloroplastic; Short=CAB-10A; Short=LHCP; Flags:
Precursor
gi|170394|gb|AAA34143.1| a-binding protein [Solanum lycopersicum]
Length = 256
Score = 422 bits (1085), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/255 (83%), Positives = 231/255 (90%), Gaps = 4/255 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTN--RV--TSSKKSVVVAALPPKKSWIPAVKG 58
A TS AVLNGL SSF+ GG KSQALLA RV ++ K V A KKSWIPAV+G
Sbjct: 2 ATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRG 61
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
GGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWS
Sbjct: 62 GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 121
Query: 119 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
GIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TAE
Sbjct: 122 GIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTAE 181
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
NFAN TGEQGYPGGKFFDPL LAGT+ +GVY+PDTEKL+RLKVAEIKHARLAM+AMLIFY
Sbjct: 182 NFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIFY 241
Query: 239 FEAGQGKTPLGALGL 253
FEAGQGKTPLGALGL
Sbjct: 242 FEAGQGKTPLGALGL 256
>gi|255629343|gb|ACU15016.1| unknown [Glycine max]
Length = 247
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/247 (83%), Positives = 227/247 (91%), Gaps = 8/247 (3%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-------GTNRVT-SSKKSVVVAALPPKKSW 52
MAAATSGAVLNGLGSSF++GG +SQ LLA G VT S ++ +VVAA PKKSW
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAAVTVSPRRLIVVAAAAPKKSW 60
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF
Sbjct: 61 LPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIF 120
Query: 113 VGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
VGQAWSG+PWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFFNP+SQSVEWATP
Sbjct: 121 VGQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATP 180
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
WSRT+ENFANATGEQGYPGGKFFDPL LAGTIKDGVYIPDTEKL+RLK+AEIKHAR+AM+
Sbjct: 181 WSRTSENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDTEKLERLKLAEIKHARIAML 240
Query: 233 AMLIFYF 239
AMLIFYF
Sbjct: 241 AMLIFYF 247
>gi|297850008|ref|XP_002892885.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
gi|297338727|gb|EFH69144.1| Lhcb6 protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/255 (81%), Positives = 224/255 (87%), Gaps = 5/255 (1%)
Query: 4 ATSGAVLNGLGSSFINGGKKSQALL-----AGTNRVTSSKKSVVVAALPPKKSWIPAVKG 58
A SGAVL+GLGSSF+ GGK+S L G RV VV AA PKKSWIPAVKG
Sbjct: 2 AVSGAVLSGLGSSFLTGGKRSSTALGNGVGTGAQRVGRKTLIVVAAAAQPKKSWIPAVKG 61
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
GGN ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWS
Sbjct: 62 GGNFLDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 121
Query: 119 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
G+PWFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWSRTAE
Sbjct: 122 GVPWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAE 181
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
NFAN TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAM+AMLIFY
Sbjct: 182 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDVEKLERLKLAEIKHSRLAMLAMLIFY 241
Query: 239 FEAGQGKTPLGALGL 253
FEAGQGKTPLGALGL
Sbjct: 242 FEAGQGKTPLGALGL 256
>gi|351728089|ref|NP_001236415.1| uncharacterized protein LOC100527463 [Glycine max]
gi|255632410|gb|ACU16555.1| unknown [Glycine max]
Length = 259
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/260 (80%), Positives = 230/260 (88%), Gaps = 8/260 (3%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-------GTNRVTSSKKSVVVAALPPKKSWI 53
MAAATSGAVLNGLGSSF++GG +SQ LLA G + ++ +VVAA PKKSW+
Sbjct: 1 MAAATSGAVLNGLGSSFLSGGNRSQTLLATAIGGKVGAAVTVNPRRLIVVAAAAPKKSWL 60
Query: 54 PAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
P V+GGGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFV
Sbjct: 61 PGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFV 120
Query: 114 GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
GQAWSG+PWFEAGADP AIAPFSFG+LLGTQL+LMGWVESKRWVDFFNP+SQSVEWATPW
Sbjct: 121 GQAWSGVPWFEAGADPNAIAPFSFGTLLGTQLILMGWVESKRWVDFFNPDSQSVEWATPW 180
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
SRTAENFANA+GE GYPGGKFFDPL AGTIKDGVYIPDTEKL+RLK+AEIKHAR+AM+A
Sbjct: 181 SRTAENFANASGEHGYPGGKFFDPLSFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLA 240
Query: 234 MLIFYFEAGQGKTPLGALGL 253
MLI + KTPLGALGL
Sbjct: 241 MLISTLSWTR-KTPLGALGL 259
>gi|312281533|dbj|BAJ33632.1| unnamed protein product [Thellungiella halophila]
Length = 258
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/258 (81%), Positives = 232/258 (89%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSS---KKSVVVAAL--PPKKSWIPA 55
MA A SGAVL+GLGSSF+ GGK+S A L ++ +K+++VAA PKKSWIPA
Sbjct: 1 MAMAVSGAVLSGLGSSFLAGGKRSAAALGSGVGAGAARAGRKTLIVAAAAAQPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGNL++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 61 VKGGGNLLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+PWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWSR
Sbjct: 121 AWSGVPWFEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSR 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFAN TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKTRDGVYEPDREKLERLKLAEIKHSRLAMVAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|15218330|ref|NP_173034.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
gi|8927661|gb|AAF82152.1|AC034256_16 Identical to Lhcb6 protein from Arabidopsis thaliana gb|AF134130
and is a member of the Chlorophyll A-B binding proteins
PF|00504. ESTs gb|AI100562, gb|AI999227, gb|AA067457,
gb|BE037598, gb|BE039058, gb|BE038945, gb|BE038657,
gb|BE038604, gb|H76294, gb|H77256, gb|N65776, gb|N38000,
gb|R90377, gb|R90578, gb|R90082, gb|T44923, gb|T76598,
gb|T04144, gb|T43786, gb|T76834, gb|T04153, gb|T45475,
gb|T76179, gb|T46781, gb|T45938, gb|T45430, gb|W43165,
gb|Z18774 come from this gene [Arabidopsis thaliana]
gi|12083258|gb|AAG48788.1|AF332425_1 putative chlorophyll binding protein [Arabidopsis thaliana]
gi|17473665|gb|AAL38289.1| Lhcb6 protein [Arabidopsis thaliana]
gi|20148631|gb|AAM10206.1| chlorophyll A-B binding protein [Arabidopsis thaliana]
gi|332191248|gb|AEE29369.1| light harvesting complex photosystem II subunit 6 [Arabidopsis
thaliana]
Length = 258
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/258 (80%), Positives = 224/258 (86%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-----GTNRVTSSKKSVVVAALPPKKSWIPA 55
MA A SGAVL+GLGSSF+ GGK+ LA G RV V AA PKKSWIPA
Sbjct: 1 MAMAVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFAN TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|4741960|gb|AAD28777.1|AF134130_1 Lhcb6 protein [Arabidopsis thaliana]
Length = 258
Score = 415 bits (1067), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/258 (80%), Positives = 224/258 (86%), Gaps = 5/258 (1%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLA-----GTNRVTSSKKSVVVAALPPKKSWIPA 55
MA A SGAVL+G+GSSF+ GGK+ LA G RV V AA PKKSWIPA
Sbjct: 1 MAMAVSGAVLSGIGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPA 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
VKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQ
Sbjct: 61 VKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQ 120
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
AWSG+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+
Sbjct: 121 AWSGVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSK 180
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TAENFAN TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAMVAML
Sbjct: 181 TAENFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAML 240
Query: 236 IFYFEAGQGKTPLGALGL 253
IFYFEAGQGKTPLGALGL
Sbjct: 241 IFYFEAGQGKTPLGALGL 258
>gi|50313237|gb|AAT74560.1| Lhcb6 protein [Brassica rapa subsp. pekinensis]
Length = 254
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/251 (81%), Positives = 225/251 (89%), Gaps = 5/251 (1%)
Query: 8 AVLNGLGSSFINGGKKSQALL---AGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNL 62
AVL+GLGSSF+ GGK+S L GT +K+++VAA PKKSWIPAVKGGGN
Sbjct: 4 AVLSGLGSSFLPGGKRSITALGSGVGTGAARFGRKTLIVAAAAAQPKKSWIPAVKGGGNF 63
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 122
++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSG+PW
Sbjct: 64 LDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGVPW 123
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
FEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWSRTAENFAN
Sbjct: 124 FEAGADPRAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSRTAENFAN 183
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG 242
TG+QGYPGG+FFDPL LAG +DGVY PD EKL+RLK+AEIKH+RLAM+AMLIFYFEAG
Sbjct: 184 YTGDQGYPGGRFFDPLGLAGKTRDGVYEPDREKLERLKLAEIKHSRLAMLAMLIFYFEAG 243
Query: 243 QGKTPLGALGL 253
QGKTPLGALGL
Sbjct: 244 QGKTPLGALGL 254
>gi|242074752|ref|XP_002447312.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
gi|241938495|gb|EES11640.1| hypothetical protein SORBIDRAFT_06g032690 [Sorghum bicolor]
Length = 255
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/213 (90%), Positives = 202/213 (94%)
Query: 41 VVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIH 100
VVVAA+ PKKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIH
Sbjct: 43 VVVAAVAPKKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIH 102
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 160
GRWAMAAV+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF
Sbjct: 103 GRWAMAAVLGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 162
Query: 161 NPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLK 220
NP+SQSVEWATPWSRTAENFAN TGEQGYPGGKFFDPL LAGT+KDGVYIPD +KL+RLK
Sbjct: 163 NPDSQSVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLK 222
Query: 221 VAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
+AEIKHARLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 223 LAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 255
>gi|225447745|ref|XP_002263201.1| PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic
[Vitis vinifera]
gi|147804704|emb|CAN71620.1| hypothetical protein VITISV_015544 [Vitis vinifera]
Length = 257
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 214/256 (83%), Positives = 231/256 (90%), Gaps = 5/256 (1%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSK-----KSVVVAALPPKKSWIPAVK 57
AATS AVLNGLGS F+ GGK+SQ+LL+ + + ++V A PKKSW+P VK
Sbjct: 2 AATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAAPKKSWLPGVK 61
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW
Sbjct: 62 AGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 121
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
SGIPWFEAGA PGA+APFSFG+LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA
Sbjct: 122 SGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 181
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
ENFANATGEQGYPGGKFFDPL LAGTIKDGVYIPD EKL+RLK+AEIKHAR+AM+AMLIF
Sbjct: 182 ENFANATGEQGYPGGKFFDPLSLAGTIKDGVYIPDVEKLERLKLAEIKHARIAMLAMLIF 241
Query: 238 YFEAGQGKTPLGALGL 253
YFEAGQGKTPLGALGL
Sbjct: 242 YFEAGQGKTPLGALGL 257
>gi|543939|sp|P36494.1|CB4_SPIOL RecName: Full=Chlorophyll a-b binding protein CP24, chloroplastic;
Flags: Precursor
gi|437991|emb|CAA81105.1| 20 kDa protein of CP24 precursor protein [Spinacia oleracea]
Length = 261
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 212/261 (81%), Positives = 235/261 (90%), Gaps = 8/261 (3%)
Query: 1 MAAATSG-AVLNGLGSSFINGGKKS-QALLAGTNRV------TSSKKSVVVAALPPKKSW 52
MAAATS A++NG S F++GGKKS Q+LL ++V TS K VV AA PKKSW
Sbjct: 1 MAAATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSW 60
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
IPAVKGGGN ++PEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIF
Sbjct: 61 IPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIF 120
Query: 113 VGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
VGQAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATP
Sbjct: 121 VGQAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATP 180
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
WSRTAENF+N+TGEQGYPGGKFFDPL LAGTI +GVY PDT+KL+RLK+AEIKHARLAM+
Sbjct: 181 WSRTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAML 240
Query: 233 AMLIFYFEAGQGKTPLGALGL 253
AMLIFYFEAGQGKTPLGALGL
Sbjct: 241 AMLIFYFEAGQGKTPLGALGL 261
>gi|195617280|gb|ACG30470.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|195639966|gb|ACG39451.1| chlorophyll a-b binding protein CP24 [Zea mays]
Length = 244
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/251 (77%), Positives = 215/251 (85%), Gaps = 10/251 (3%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNL 62
A TS AVL + F+ G +++ A + + V+ AA KKSWIPA+K +
Sbjct: 4 APTSAAVLK---TPFL-GARRALA------KPAPRRALVIAAAAAAKKSWIPAIKSDAEI 53
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 122
+NP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWSGIPW
Sbjct: 54 VNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGIPW 113
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
FEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQ+VEWATPWSRTAENFAN
Sbjct: 114 FEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVEWATPWSRTAENFAN 173
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG 242
TGEQGYPGGKFFDPL LAGT+KDGVYIPD +KL+RLK+AEIKHAR+AM+AML FYFEAG
Sbjct: 174 FTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEAG 233
Query: 243 QGKTPLGALGL 253
QGKTPLGALGL
Sbjct: 234 QGKTPLGALGL 244
>gi|226501904|ref|NP_001141632.1| uncharacterized protein LOC100273752 [Zea mays]
gi|226531392|ref|NP_001148406.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|194705338|gb|ACF86753.1| unknown [Zea mays]
gi|195619056|gb|ACG31358.1| chlorophyll a-b binding protein CP24 [Zea mays]
gi|414584819|tpg|DAA35390.1| TPA: chlorophyll a-b binding protein CP24 isoform 1 [Zea mays]
gi|414584820|tpg|DAA35391.1| TPA: chlorophyll a-b binding protein CP24 isoform 2 [Zea mays]
Length = 253
Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/205 (89%), Positives = 195/205 (95%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV
Sbjct: 49 KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVE
Sbjct: 109 LGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVE 168
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTAENFAN TG+QGYPGGKFFDPL LAGT+KDGVY+PD EKL+RLK+AEIKHAR
Sbjct: 169 WATPWSRTAENFANFTGDQGYPGGKFFDPLGLAGTVKDGVYVPDVEKLERLKLAEIKHAR 228
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
+AM+AML+FYFEAGQGKTPLGALGL
Sbjct: 229 IAMLAMLVFYFEAGQGKTPLGALGL 253
>gi|115458738|ref|NP_001052969.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|21740892|emb|CAD40888.1| OSJNBa0036B21.6 [Oryza sativa Japonica Group]
gi|113564540|dbj|BAF14883.1| Os04g0457000 [Oryza sativa Japonica Group]
gi|125548549|gb|EAY94371.1| hypothetical protein OsI_16135 [Oryza sativa Indica Group]
gi|125548552|gb|EAY94374.1| hypothetical protein OsI_16138 [Oryza sativa Indica Group]
gi|215740813|dbj|BAG96969.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 252
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/218 (84%), Positives = 201/218 (92%), Gaps = 3/218 (1%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYRE 95
+ ++++VV+A KKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYRE
Sbjct: 38 APRRALVVSA---KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYRE 94
Query: 96 AELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 155
AELIHGRWAMAAV+GIFVGQAWSG+PWFEAGA P AIAPFSFGSLLGTQLLLMGWVESKR
Sbjct: 95 AELIHGRWAMAAVLGIFVGQAWSGVPWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKR 154
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
WVDFFNP+SQ+VEWATPWSRTAENF+NATGEQGYPGGKFFDPL L G +DGVYIPDT+K
Sbjct: 155 WVDFFNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDK 214
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
LDRLK+AEIKHARLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 215 LDRLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 252
>gi|413919930|gb|AFW59862.1| chlorophyll a/b-binding apoprotein CP24 Precursor [Zea mays]
Length = 248
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 182/205 (88%), Positives = 195/205 (95%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSWIPA+K ++NP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV
Sbjct: 44 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 103
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVGQAWSGIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQ+VE
Sbjct: 104 LGIFVGQAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVE 163
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTAENFAN TGEQGYPGGKFFDPL LAGT+KDGVYIPD +KL+RLK+AEIKHAR
Sbjct: 164 WATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLKLAEIKHAR 223
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
+AM+AML FYFEAGQGKTPLGALGL
Sbjct: 224 IAMLAMLAFYFEAGQGKTPLGALGL 248
>gi|116309995|emb|CAH67022.1| H0523F07.10 [Oryza sativa Indica Group]
Length = 252
Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/216 (85%), Positives = 199/216 (92%), Gaps = 3/216 (1%)
Query: 38 KKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAE 97
++++VV+A KKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAE
Sbjct: 40 RRALVVSA---KKSWIPAFKSDAEFINPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREAE 96
Query: 98 LIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
LIHGRWAMAAV+GIFVGQAWSG+PWFEAGA P AIAPFS GSLLGTQLLLMGWVESKRWV
Sbjct: 97 LIHGRWAMAAVLGIFVGQAWSGVPWFEAGAQPEAIAPFSSGSLLGTQLLLMGWVESKRWV 156
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
DFFNP+SQSVEWATPWSRTAENF+NATGEQGYPGGKFFDPL L G +DGVYIPDT+KLD
Sbjct: 157 DFFNPDSQSVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLD 216
Query: 218 RLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
RLK+AEIKHARLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 217 RLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 252
>gi|326487444|dbj|BAJ89706.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493456|dbj|BAJ85189.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326529461|dbj|BAK04677.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust.
Identities = 181/205 (88%), Positives = 192/205 (93%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV
Sbjct: 51 KKSWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 110
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIF+GQA+SG+PWFEAGA PGA+APFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVE
Sbjct: 111 LGIFIGQAYSGVPWFEAGAQPGAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVE 170
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTAENFAN TGEQGYPGGKFFDPL L G KDG+YIPDTEKL+RLKVAEIKH+R
Sbjct: 171 WATPWSRTAENFANFTGEQGYPGGKFFDPLGLGGETKDGIYIPDTEKLERLKVAEIKHSR 230
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
LAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 231 LAMLAMLIFYFEAGQGKTPLGALGL 255
>gi|357163903|ref|XP_003579885.1| PREDICTED: chlorophyll a-b binding protein CP24 10A,
chloroplastic-like [Brachypodium distachyon]
Length = 256
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 179/205 (87%), Positives = 193/205 (94%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSWIPA K INP WLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV
Sbjct: 52 KKSWIPAFKSDAEFINPSWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 111
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVGQA+SG+PWFEAGA PGA+APFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQ+VE
Sbjct: 112 LGIFVGQAYSGVPWFEAGAQPGAVAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVE 171
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTA+NFAN+TG+QGYPGGKFFDPL L G KDGVYIPDT+KL+RLK+AEIKHAR
Sbjct: 172 WATPWSRTADNFANSTGDQGYPGGKFFDPLGLGGDTKDGVYIPDTDKLERLKLAEIKHAR 231
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
LAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 232 LAMLAMLIFYFEAGQGKTPLGALGL 256
>gi|162461245|ref|NP_001105375.1| light harvesting chlorophyll a/b binding protein6 precursor [Zea
mays]
gi|733458|gb|AAA64416.1| chlorophyll a/b-binding apoprotein CP24 precursor [Zea mays]
Length = 247
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 177/205 (86%), Positives = 192/205 (93%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSWIPA+K ++NP WLDGSLPGD+GFDPLGLGKDPAFLKWYREA++IHGRWAMAAV
Sbjct: 43 KKSWIPAIKSDAEIVNPPWLDGSLPGDFGFDPLGLGKDPAFLKWYREADVIHGRWAMAAV 102
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVGQAWSGIPWFEAGADP IAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQ+VE
Sbjct: 103 LGIFVGQAWSGIPWFEAGADPTRIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQAVE 162
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTAENFAN TGEQGYPGGKFFDPL LAGT +DGVYIPD +KL+RLK+AEIKHAR
Sbjct: 163 WATPWSRTAENFANFTGEQGYPGGKFFDPLALAGTSRDGVYIPDVDKLERLKLAEIKHAR 222
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
+AM+AML FYFEAGQGKT LGALGL
Sbjct: 223 IAMLAMLAFYFEAGQGKTRLGALGL 247
>gi|168009690|ref|XP_001757538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168009894|ref|XP_001757640.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691232|gb|EDQ77595.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691334|gb|EDQ77697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 219
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/218 (82%), Positives = 196/218 (89%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYRE 95
++KK A KKSWIPAVKGGGNL +PEWLDGSLPGDYGFDPLGLG+DPA LKWYRE
Sbjct: 2 ATKKVSARPAAGGKKSWIPAVKGGGNLTDPEWLDGSLPGDYGFDPLGLGRDPAALKWYRE 61
Query: 96 AELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 155
AELIHGRWAMAAVVGIFVGQ WSG+PWFEAGADP A+APFSFGSLLGTQLLLMGWVE+KR
Sbjct: 62 AELIHGRWAMAAVVGIFVGQGWSGVPWFEAGADPAALAPFSFGSLLGTQLLLMGWVETKR 121
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W+DF NP +QSVEWATPWSRTAENF N+TG QGYPGGKFFDPL LAG+++ G Y+PD K
Sbjct: 122 WIDFLNPGTQSVEWATPWSRTAENFNNSTGLQGYPGGKFFDPLALAGSVQGGQYVPDFSK 181
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
L+RL++AEIKHARLAMVAMLIFYFEAGQG TPLGALGL
Sbjct: 182 LERLQLAEIKHARLAMVAMLIFYFEAGQGFTPLGALGL 219
>gi|365268963|gb|AEW70714.1| light harvesting chlorophyll a-b binding protein 6 [Phyllostachys
edulis]
Length = 250
Score = 355 bits (912), Expect = 7e-96, Method: Compositional matrix adjust.
Identities = 178/205 (86%), Positives = 193/205 (94%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSW+PAVK INP WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM+AV
Sbjct: 46 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 105
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVGQAWSG+PWFEAGA PGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVE
Sbjct: 106 LGIFVGQAWSGVPWFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSPDSQSVE 165
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTA+NFANATGEQGYPGGKFFDPL L G +DGVYIPD +KL+RLK+AEIKHAR
Sbjct: 166 WATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLAEIKHAR 225
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
+AM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 226 VAMLAMLIFYFEAGQGKTPLGALGL 250
>gi|167966192|gb|ACA13177.1| chloroplast a/b binding protein cab-PhE11 [Phyllostachys edulis]
Length = 252
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 177/205 (86%), Positives = 193/205 (94%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
KKSW+PAVK INP WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM+AV
Sbjct: 48 KKSWVPAVKSDAEFINPPWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMSAV 107
Query: 109 VGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GIFVG+AWSG+PWFEAGA PGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVE
Sbjct: 108 LGIFVGRAWSGVPWFEAGAQPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFSPDSQSVE 167
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
WATPWSRTA+NFANATGEQGYPGGKFFDPL L G +DGVYIPD +KL+RLK+AEIKHAR
Sbjct: 168 WATPWSRTADNFANATGEQGYPGGKFFDPLGLGGITQDGVYIPDADKLERLKLAEIKHAR 227
Query: 229 LAMVAMLIFYFEAGQGKTPLGALGL 253
+AM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 228 VAMLAMLIFYFEAGQGKTPLGALGL 252
>gi|302808848|ref|XP_002986118.1| light-harvesting complex [Selaginella moellendorffii]
gi|302815978|ref|XP_002989669.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142640|gb|EFJ09339.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146266|gb|EFJ12937.1| light-harvesting complex [Selaginella moellendorffii]
Length = 259
Score = 350 bits (899), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 184/242 (76%), Positives = 207/242 (85%), Gaps = 8/242 (3%)
Query: 17 FINGGKKSQALLA-----GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
F++G S ALL+ G + + + + KKSW+P V+GGG+L++PEWLDGS
Sbjct: 21 FVSG---SNALLSHCPSNGARVMAMATRKISAKPASGKKSWLPGVRGGGDLVDPEWLDGS 77
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 131
LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA PGA
Sbjct: 78 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAAPGA 137
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
+APFSFGSLLGTQLLLMGWVESKR+VDFF P +Q+VEWATPWSRTA NFAN+TG QGYPG
Sbjct: 138 VAPFSFGSLLGTQLLLMGWVESKRYVDFFEPNTQAVEWATPWSRTAVNFANSTGLQGYPG 197
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGAL 251
GKFFDPL LAG++K G Y+PD +KL RL++AEIKHARLAMVAMLIFYFEAGQG TPLGAL
Sbjct: 198 GKFFDPLRLAGSMKGGDYVPDFDKLQRLQLAEIKHARLAMVAMLIFYFEAGQGLTPLGAL 257
Query: 252 GL 253
GL
Sbjct: 258 GL 259
>gi|403241542|gb|AFR32945.1| light-harvesting complex photosystem II, partial [Selaginella
martensii]
Length = 226
Score = 342 bits (877), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 173/224 (77%), Positives = 196/224 (87%)
Query: 30 GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF 89
G V + K + KKSW+P V+ GG+L++P WLDGSLPGDYGFDPLGLGKDPAF
Sbjct: 3 GARVVAMATKKISAKPSSGKKSWLPGVRAGGDLVDPSWLDGSLPGDYGFDPLGLGKDPAF 62
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMG 149
LKWYREAE+IHGRWAMAAV+GIFVGQAWSG+PWFEAGA PGA+APFSFGSLLGTQLLLMG
Sbjct: 63 LKWYREAEIIHGRWAMAAVLGIFVGQAWSGVPWFEAGAAPGAVAPFSFGSLLGTQLLLMG 122
Query: 150 WVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVY 209
WVESKR+VDFF+P +Q++EWATPWSRTA NF N+TG QGYPGGKFFDPL LAG +K G Y
Sbjct: 123 WVESKRYVDFFDPGTQALEWATPWSRTASNFGNSTGLQGYPGGKFFDPLRLAGEMKGGDY 182
Query: 210 IPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
+PD EKL+RL++AEIKHARLAM+AMLIFYFEAGQG TPLGALGL
Sbjct: 183 VPDFEKLERLQLAEIKHARLAMLAMLIFYFEAGQGLTPLGALGL 226
>gi|125590602|gb|EAZ30952.1| hypothetical protein OsJ_15029 [Oryza sativa Japonica Group]
Length = 236
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 162/215 (75%), Positives = 176/215 (81%), Gaps = 19/215 (8%)
Query: 39 KSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
+++VV+A KKSWIPA K INP WLDGS G G+ L
Sbjct: 41 RALVVSA---KKSWIPAFKSDAEFINPPWLDGSRSSS------GTGRR----------SL 81
Query: 99 IHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 158
IHGRWAMAAV+GIFVGQAWSG+PWFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVD
Sbjct: 82 IHGRWAMAAVLGIFVGQAWSGVPWFEAGAQPEAIAPFSFGSLLGTQLLLMGWVESKRWVD 141
Query: 159 FFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDR 218
FFNP+SQ+VEWATPWSRTAENF+NATGEQGYPGGKFFDPL L G +DGVYIPDT+KLDR
Sbjct: 142 FFNPDSQAVEWATPWSRTAENFSNATGEQGYPGGKFFDPLGLGGETRDGVYIPDTDKLDR 201
Query: 219 LKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
LK+AEIKHARLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 202 LKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 236
>gi|192764579|gb|ACF05833.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764581|gb|ACF05834.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764583|gb|ACF05835.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764585|gb|ACF05836.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764587|gb|ACF05837.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764589|gb|ACF05838.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764601|gb|ACF05844.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764605|gb|ACF05846.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764607|gb|ACF05847.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764609|gb|ACF05848.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764611|gb|ACF05849.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764613|gb|ACF05850.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764615|gb|ACF05851.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764619|gb|ACF05853.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764621|gb|ACF05854.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 151/168 (89%), Positives = 161/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA
Sbjct: 7 ARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764577|gb|ACF05832.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/173 (86%), Positives = 161/173 (93%)
Query: 32 NRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+R ++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDP FLK
Sbjct: 2 SRSVGARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLK 61
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 151
WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA ADPGAIAPFSFGSLLGTQL+LMGWV
Sbjct: 62 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEACADPGAIAPFSFGSLLGTQLILMGWV 121
Query: 152 ESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
ESKRWVDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 122 ESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764617|gb|ACF05852.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 160/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA
Sbjct: 7 ARKLTIVATAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764599|gb|ACF05843.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764603|gb|ACF05845.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 313 bits (802), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 160/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDP FLKWYREA
Sbjct: 7 ARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764591|gb|ACF05839.1| chloroplast light-harvesting complex II protein [Populus tremula]
gi|192764593|gb|ACF05840.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 313 bits (801), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 160/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA
Sbjct: 7 ARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVV IFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVSIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764575|gb|ACF05831.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 312 bits (800), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 160/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA
Sbjct: 7 ARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVVGIFVGQAWSGIPWFEA ADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVGIFVGQAWSGIPWFEACADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764597|gb|ACF05842.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 311 bits (798), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 150/168 (89%), Positives = 160/168 (95%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA
Sbjct: 7 ARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 66
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQL+LMGWVESKRW
Sbjct: 67 ELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLILMGWVESKRW 126
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
VDFFNPESQSVEWA PWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 127 VDFFNPESQSVEWAPPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|192764595|gb|ACF05841.1| chloroplast light-harvesting complex II protein [Populus tremula]
Length = 174
Score = 311 bits (797), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 149/173 (86%), Positives = 160/173 (92%)
Query: 32 NRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+R ++K +VAA PKKSWIPAVKGGG+ ++PEWLDGSLPGDYGFDPLGLGKDP FLK
Sbjct: 2 SRSVGARKLTIVAAAQPKKSWIPAVKGGGSFVDPEWLDGSLPGDYGFDPLGLGKDPTFLK 61
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 151
WYREAELIHGRWAMAAVV IFVGQAWSGIPWFEA ADPGAIAPFSFGSLLGTQL+LMGWV
Sbjct: 62 WYREAELIHGRWAMAAVVSIFVGQAWSGIPWFEACADPGAIAPFSFGSLLGTQLILMGWV 121
Query: 152 ESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
ESKRWVDFFNPESQSVEWATPWS+TAENFANATG+QGYPGGKFFDPL AGT+
Sbjct: 122 ESKRWVDFFNPESQSVEWATPWSKTAENFANATGDQGYPGGKFFDPLGFAGTL 174
>gi|375152108|gb|AFA36512.1| chloroplast a/b binding protein cab-PhE11, partial [Lolium perenne]
Length = 160
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 143/160 (89%), Positives = 153/160 (95%)
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVES 153
REAELIHGRWAMAAV+GIFVGQA+SG+ WFEAGA PGA+APFSFGSLLGTQLLLMGWVES
Sbjct: 1 REAELIHGRWAMAAVLGIFVGQAYSGVAWFEAGAQPGAVAPFSFGSLLGTQLLLMGWVES 60
Query: 154 KRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDT 213
KRWVDFFNP+SQSVEWATPWSRTAENF+N+TGEQGYPGGKFFDPL L G KDGVYIPD
Sbjct: 61 KRWVDFFNPDSQSVEWATPWSRTAENFSNSTGEQGYPGGKFFDPLGLGGDTKDGVYIPDA 120
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
+KLDRLK+AEIKHARLAM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 121 DKLDRLKLAEIKHARLAMLAMLIFYFEAGQGKTPLGALGL 160
>gi|194689410|gb|ACF78789.1| unknown [Zea mays]
gi|413919931|gb|AFW59863.1| hypothetical protein ZEAMMB73_098595 [Zea mays]
gi|413919932|gb|AFW59864.1| hypothetical protein ZEAMMB73_098595 [Zea mays]
Length = 149
Score = 280 bits (715), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 135/149 (90%), Positives = 144/149 (96%)
Query: 105 MAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
MAAV+GIFVGQAWSGIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+S
Sbjct: 1 MAAVLGIFVGQAWSGIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDS 60
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
Q+VEWATPWSRTAENFAN TGEQGYPGGKFFDPL LAGT+KDGVYIPD +KL+RLK+AEI
Sbjct: 61 QAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDGVYIPDVDKLERLKLAEI 120
Query: 225 KHARLAMVAMLIFYFEAGQGKTPLGALGL 253
KHAR+AM+AML FYFEAGQGKTPLGALGL
Sbjct: 121 KHARIAMLAMLAFYFEAGQGKTPLGALGL 149
>gi|60549178|gb|AAX23999.1| chloroplast chlorophyll a/b-binding protein CP24 precursor, partial
[Fragaria x ananassa]
Length = 147
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/147 (88%), Positives = 142/147 (96%)
Query: 88 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLL 147
AFLKWYREAELIHGRWAM AVVGIFVGQAWSG+PWF+AGADP A+APFSFG+LLGTQLLL
Sbjct: 1 AFLKWYREAELIHGRWAMTAVVGIFVGQAWSGVPWFQAGADPSAVAPFSFGTLLGTQLLL 60
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MGWVESKRWVDF+NPESQSVEWATPWS+TAENF+N TGEQGYPGGKFFDPL AGTIKDG
Sbjct: 61 MGWVESKRWVDFYNPESQSVEWATPWSKTAENFSNFTGEQGYPGGKFFDPLGFAGTIKDG 120
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAM 234
VYIPDTEKL+RL++AEIKH+RLAM+AM
Sbjct: 121 VYIPDTEKLERLQLAEIKHSRLAMLAM 147
>gi|296081542|emb|CBI20065.3| unnamed protein product [Vitis vinifera]
Length = 198
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/159 (77%), Positives = 136/159 (85%), Gaps = 5/159 (3%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSK-----KSVVVAALPPKKSWIPAVK 57
AATS AVLNGLGS F+ GGK+SQ+LL+ + + ++V A PKKSW+P VK
Sbjct: 2 AATSAAVLNGLGSPFLTGGKRSQSLLSAGVAAKAGAAVPAPRRLIVVAAAPKKSWLPGVK 61
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
GGNL++PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW
Sbjct: 62 AGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 121
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
SGIPWFEAGA PGA+APFSFG+LLGTQLLLMGWVESKRW
Sbjct: 122 SGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRW 160
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/28 (92%), Positives = 28/28 (100%)
Query: 226 HARLAMVAMLIFYFEAGQGKTPLGALGL 253
HAR+AM+AMLIFYFEAGQGKTPLGALGL
Sbjct: 171 HARIAMLAMLIFYFEAGQGKTPLGALGL 198
>gi|195640768|gb|ACG39852.1| hypothetical protein [Zea mays]
Length = 106
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 94/106 (88%), Positives = 102/106 (96%)
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MGWVESKRWVDFFNP+SQ+VEWATPWSRTAENFAN TGEQGYPGGKFFDPL LAGT+KDG
Sbjct: 1 MGWVESKRWVDFFNPDSQAVEWATPWSRTAENFANFTGEQGYPGGKFFDPLGLAGTVKDG 60
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPLGALGL 253
VYIPD +KL+RLK+AEIKHAR+AM+AML FYFEAGQGKTPLGALGL
Sbjct: 61 VYIPDVDKLERLKLAEIKHARIAMLAMLAFYFEAGQGKTPLGALGL 106
>gi|154101549|gb|ABS58590.1| chloroplast light-harvesting complex b6 [Scutellaria baicalensis]
Length = 125
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 114/125 (91%), Positives = 121/125 (96%)
Query: 103 WAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
WAMAAV GIFVGQAWSGIPWFEAGA PGA+APFSFG+LLGTQLLLMGWVESKRWVDFFNP
Sbjct: 1 WAMAAVFGIFVGQAWSGIPWFEAGAAPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFNP 60
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
ESQSVEWATPWS+TAENFANATGEQGYPGGKFFDPL AGT+KDGVYIPD+EKL+RLK+A
Sbjct: 61 ESQSVEWATPWSKTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDSEKLERLKLA 120
Query: 223 EIKHA 227
EIKHA
Sbjct: 121 EIKHA 125
>gi|115448873|ref|NP_001048216.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|46805727|dbj|BAD17114.1| putative light-harvesting chlorophyll-a/b protein of photosystem I
[Oryza sativa Japonica Group]
gi|113537747|dbj|BAF10130.1| Os02g0764500 [Oryza sativa Japonica Group]
gi|215694704|dbj|BAG89895.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222623725|gb|EEE57857.1| hypothetical protein OsJ_08493 [Oryza sativa Japonica Group]
Length = 261
Score = 151 bits (381), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 135/252 (53%), Gaps = 35/252 (13%)
Query: 1 MAAATSGAVLNG--LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKG 58
+ A + G VL+ L + +S A + G + S + + V A + +W+P
Sbjct: 4 LGANSHGRVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLPG--- 60
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW- 117
L P LDG+LPGD+GFDPLGLG++PA LKWY +AEL+H R+AMA V GI
Sbjct: 61 ---LDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDLIR 117
Query: 118 -SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
SGI WFEAGA F F + L QLLLMG+ E+KR++DF NP SQ+ E
Sbjct: 118 VSGINNLPVWFEAGA-----TKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEE- 171
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229
+ A A + GYPGG F+PL LA D E D K+ EIK+ RL
Sbjct: 172 ---GTFLGIEAALAGSQPGYPGGPLFNPLGLAK---------DIENADEAKLKEIKNGRL 219
Query: 230 AMVAMLIFYFEA 241
AMVAML F +A
Sbjct: 220 AMVAMLGFIVQA 231
>gi|218191630|gb|EEC74057.1| hypothetical protein OsI_09055 [Oryza sativa Indica Group]
Length = 261
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 104/252 (41%), Positives = 135/252 (53%), Gaps = 35/252 (13%)
Query: 1 MAAATSGAVLNG--LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKG 58
+ A + G VL+ L + +S A + G + S + + V A + +W+P
Sbjct: 4 LGANSHGRVLHTCTLSPKPVTALSRSMAAIPGHHVFQSPRARIAVRASTERATWLPG--- 60
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--A 116
L P LDG+LPGD+GFDPLGLG++PA LKWY +AEL+H R+AMA V GI
Sbjct: 61 ---LDPPPHLDGTLPGDFGFDPLGLGEEPANLKWYVQAELVHCRFAMAGVAGILATDFIR 117
Query: 117 WSGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
SGI WFEAGA F F + L QLLLMG+ E+KR++DF NP SQ+ E
Sbjct: 118 VSGINNLPVWFEAGA-----TKFDFANTTALFFVQLLLMGFAETKRYMDFINPGSQAEE- 171
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229
+ A A + GYPGG F+PL LA D E D K+ EIK+ RL
Sbjct: 172 ---GTFLGIEAALAGSQPGYPGGPLFNPLGLAK---------DIENADEAKLKEIKNGRL 219
Query: 230 AMVAMLIFYFEA 241
AMVAML F +A
Sbjct: 220 AMVAMLGFIVQA 231
>gi|356556398|ref|XP_003546513.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 98/254 (38%), Positives = 129/254 (50%), Gaps = 36/254 (14%)
Query: 1 MAAATSGAVLNGLGSSFINGG---KKSQALLAGTNRVTSSKK---SVVVAALPPKKS-WI 53
MA A S L+ L + I ++ L+ T R + S V LPP + W
Sbjct: 1 MALALSSTALSSLPNREIRQKGFPDRTPTCLSLTRRTVAYATKGVSAVCEPLPPDRPLWF 60
Query: 54 PAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM AV GI V
Sbjct: 61 PGSS------PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHARWAMLAVFGILV 114
Query: 114 GQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ I W++AGA + P +L Q+ LMGWVE +RW D NP S +
Sbjct: 115 PELLEKIGYIENFSWYDAGAREYFVDP---TTLFVVQMGLMGWVEGRRWADMVNPGSVDI 171
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
E P + N + GYPGG +FDP+ + V + L+ EIK+
Sbjct: 172 EPKVP------HITNPKPDVGYPGGLWFDPMMWGRGSPEPVMV--------LRTKEIKNG 217
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A + F+F+A
Sbjct: 218 RLAMLAFVGFWFQA 231
>gi|356530445|ref|XP_003533791.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Glycine max]
Length = 260
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/254 (38%), Positives = 130/254 (51%), Gaps = 36/254 (14%)
Query: 1 MAAATSGAVLNGLGSSFINGG---KKSQALLAGTNRVTSSKK---SVVVAALPPKKS-WI 53
MA A S L+ L + I +++ L+ T R ++ S V LPP + W
Sbjct: 1 MALALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWF 60
Query: 54 PAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM AV GI V
Sbjct: 61 PGSS------PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILV 114
Query: 114 GQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ I W++AG + P +L Q+ LMGWVE +RW D NP S +
Sbjct: 115 PELLERIGYIENFSWYDAGTREYFVDP---TTLFVVQMGLMGWVEGRRWADIVNPGSVDI 171
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
E P + N + GYPGG +FDP+ + V + L+ EIK+
Sbjct: 172 EPKVP------HVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV--------LRTKEIKNG 217
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A + F+F+A
Sbjct: 218 RLAMLAFVGFWFQA 231
>gi|255646839|gb|ACU23891.1| unknown [Glycine max]
Length = 260
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 129/254 (50%), Gaps = 36/254 (14%)
Query: 1 MAAATSGAVLNGLGSSFINGG---KKSQALLAGTNRVTSSKK---SVVVAALPPKKS-WI 53
MA A S L+ L + I +++ L+ T R ++ S V LPP + W
Sbjct: 1 MALALSSTALSSLPNREIRQKGFPERTPTCLSLTRRTIANATKGVSAVCEPLPPDRPLWF 60
Query: 54 PAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM AV GI V
Sbjct: 61 PGSS------PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVFGILV 114
Query: 114 GQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ I W++AG + P +L Q+ LMGWVE +RW D NP S +
Sbjct: 115 PELLERIGYIENFSWYDAGTREYFVDP---TTLFVVQMGLMGWVEGRRWADIVNPGSVDI 171
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
E P + N + GYPGG +FDP+ + V + L+ EIK+
Sbjct: 172 EPKVP------HVTNPKPDVGYPGGLWFDPMMWGRGSPEPVMV--------LRTKEIKNG 217
Query: 228 RLAMVAMLIFYFEA 241
LAM+A + F+F+A
Sbjct: 218 GLAMLAFVGFWFQA 231
>gi|388508808|gb|AFK42470.1| unknown [Lotus japonicus]
Length = 259
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 102/262 (38%), Positives = 132/262 (50%), Gaps = 45/262 (17%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGT-----NRV-TSSKKSV--VVAALPPKKS- 51
MA + S L S+F N K+ + T R+ T++KK V V LPP +
Sbjct: 1 MALSISSTAL----STFPNTEKRHKVFPERTATWLPRRIHTNAKKGVSDVCEPLPPDRPL 56
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 111
W P PEWLDGSLPGD+GFDP+GLG DP LKW +AEL+H RWAM V GI
Sbjct: 57 WFPGSS------PPEWLDGSLPGDFGFDPIGLGSDPELLKWLAQAELMHARWAMLGVSGI 110
Query: 112 FVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ + + W+EAG P +L QL LMGWVE +RW D NP S
Sbjct: 111 LIPELLEKMGYVENYSWYEAGTQEYFADP---TTLFIVQLALMGWVEGRRWADLVNPGSV 167
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+E P N N + GYPGG +FDP+ + V + L+ EIK
Sbjct: 168 DIEPKLP------NRPNPKPDVGYPGGLWFDPMMWGRGSPEPVMV--------LRTKEIK 213
Query: 226 HARLAMVAMLIFYFEA---GQG 244
+ RLAM+A + F+F+A GQG
Sbjct: 214 NGRLAMLAFVGFWFQAIYTGQG 235
>gi|225444667|ref|XP_002277280.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738533|emb|CBI27778.3| unnamed protein product [Vitis vinifera]
Length = 259
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 90/228 (39%), Positives = 118/228 (51%), Gaps = 31/228 (13%)
Query: 22 KKSQALLAGTNRVTSSK-KSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFD 79
+K L G R+ ++K S V LPP + W P PEWLDGSLPGD+GFD
Sbjct: 25 RKLTTWLPGRVRLNATKGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFD 78
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIA 133
PLGLG DP L+W+ +AEL+H RWAM AV GI + + + W++AGA
Sbjct: 79 PLGLGSDPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFAD 138
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
P +L QL LMGWVE +RW D NP ++ P N A + GYPGG
Sbjct: 139 P---TTLFVVQLALMGWVEGRRWADLINPGCVDIQLTFP------NKAKPKPDVGYPGGL 189
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+FDP + V + L+ EIK+ RLAM+A + F F+A
Sbjct: 190 WFDPFMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGFCFQA 229
>gi|147795581|emb|CAN69989.1| hypothetical protein VITISV_024400 [Vitis vinifera]
Length = 229
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 88/222 (39%), Positives = 115/222 (51%), Gaps = 31/222 (13%)
Query: 28 LAGTNRVTSSK-KSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
+ G R+ ++K S V LPP + W P PEWLDGSLPGD+GFDPLGLG
Sbjct: 1 MVGRVRLNATKGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGS 54
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQAW------SGIPWFEAGADPGAIAPFSFGS 139
DP L+W+ +AEL+H RWAM AV GI + + W++AGA P +
Sbjct: 55 DPELLRWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAQEFFADP---TT 111
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L QL LMGWVE +RW D NP ++ P N A + GYPGG +FDP
Sbjct: 112 LFVVQLALMGWVEGRRWADLINPGCVDIQLTFP------NKAKPKPDVGYPGGLWFDPFM 165
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ V + L+ EIK+ RLAM+A + F F+A
Sbjct: 166 WGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGFCFQA 199
>gi|242066618|ref|XP_002454598.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
gi|241934429|gb|EES07574.1| hypothetical protein SORBIDRAFT_04g034130 [Sorghum bicolor]
Length = 266
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/202 (46%), Positives = 115/202 (56%), Gaps = 33/202 (16%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P LDG+LPGD+GFDPLGLG+DPA LKWY +AEL+H R+AMA V
Sbjct: 59 RPTWLPG------LDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGV 112
Query: 109 VGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
GI S +P WFEAGA A F F + L QLLLMG+ E+KR++DF
Sbjct: 113 AGILFTDLLRVSGNSDLPVWFEAGA-----AKFEFANTTALFFVQLLLMGFAETKRYMDF 167
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
NP SQ+ E + A A + GYPGG F+PL LA D E
Sbjct: 168 KNPGSQAEE----GTFIGLEAALAGQQPGYPGGPLFNPLGLAK---------DIENAHEE 214
Query: 220 KVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML F +A
Sbjct: 215 KLKEIKNGRLAMVAMLGFMVQA 236
>gi|449452592|ref|XP_004144043.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 119/222 (53%), Gaps = 33/222 (14%)
Query: 33 RVTSSKKSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+ S S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LK
Sbjct: 43 KAAKSGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPETLK 96
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQL 145
W+ +AEL+H RWAM AV GI + + + + W++AG+ P +LL QL
Sbjct: 97 WFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADP---TTLLVAQL 153
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LMGWVE +RW D NP S V+ P + A+ + GYPGG +FDP+
Sbjct: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKKKAK------ADVGYPGGFWFDPMMWGRGSP 207
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA---GQG 244
+ V + L+ EIK+ RLAM+A + +F+A GQG
Sbjct: 208 EPVMV--------LRTKEIKNGRLAMLAFVGLWFQAIYTGQG 241
>gi|357137970|ref|XP_003570571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 259
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 92/203 (45%), Positives = 118/203 (58%), Gaps = 35/203 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P +LDG+LPGDYGFDPLGLG++PA LKWY +AEL+H R+AMA V
Sbjct: 52 RATWLPG------LDPPPYLDGTLPGDYGFDPLGLGEEPADLKWYVQAELVHCRFAMAGV 105
Query: 109 VGIF-----VGQAWSGIP-WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
GI S +P WFEAGA F F + L QLLLMG+VE+KR++D
Sbjct: 106 AGILGTDLIRVSGISNLPVWFEAGA-----TKFDFANTTALFFVQLLLMGFVETKRYMDI 160
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQ-GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDR 218
NP SQ+ E A+ G Q GYPGG F+P+ LA IK+
Sbjct: 161 VNPGSQAEEGTFLGIE-----ASLEGLQPGYPGGPLFNPMGLAKDIKNA---------HE 206
Query: 219 LKVAEIKHARLAMVAMLIFYFEA 241
+K+ EIK+ RLAMVAML F+ +A
Sbjct: 207 VKLKEIKNGRLAMVAMLGFFVQA 229
>gi|449500520|ref|XP_004161120.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/222 (40%), Positives = 118/222 (53%), Gaps = 33/222 (14%)
Query: 33 RVTSSKKSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+ S S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LK
Sbjct: 43 KAAKSGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPETLK 96
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQL 145
W+ +AEL+H RWAM AV GI + + + + W++AG+ P +LL QL
Sbjct: 97 WFAQAELMHARWAMLAVAGILLPEWFESLGLIQNFSWYDAGSREYFADP---TTLLVAQL 153
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LMGWVE +RW D NP S V+ P + A + GYPGG +FDP+
Sbjct: 154 ALMGWVEGRRWADLVNPGSVDVDLKLPHKK------KAMADVGYPGGFWFDPMMWGRGSP 207
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA---GQG 244
+ V + L+ EIK+ RLAM+A + +F+A GQG
Sbjct: 208 EPVMV--------LRTKEIKNGRLAMLAFVGLWFQAIYTGQG 241
>gi|326496799|dbj|BAJ98426.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509469|dbj|BAJ91651.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326509647|dbj|BAJ87039.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 257
Score = 140 bits (354), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/220 (43%), Positives = 122/220 (55%), Gaps = 35/220 (15%)
Query: 32 NRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+ S + V A+ + +W+P L P +LDG+LPGDYGFDPLGLG+ P LK
Sbjct: 33 HHAESPRARFAVRAIAERATWLPG------LDPPAYLDGTLPGDYGFDPLGLGEQPEDLK 86
Query: 92 WYREAELIHGRWAMAAVVGIFVGQ--AWSGI----PWFEAGADPGAIAPFSFGS---LLG 142
WY +AEL+H R+AMA V GI SGI WFEAGA F F + L
Sbjct: 87 WYVQAELVHCRFAMAGVAGILGTDLIRVSGIGNLPVWFEAGA-----TKFDFANTTALFF 141
Query: 143 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ-GYPGGKFFDPLCLA 201
QLLLMG+VE+KR++DF +P SQ+ E A+ G Q GYPGG F+P+ LA
Sbjct: 142 VQLLLMGFVETKRYMDFVSPGSQAKEGTFLGIE-----ASLEGLQPGYPGGPLFNPMGLA 196
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D E + +K+ EIK+ RLAMVAML F +A
Sbjct: 197 K---------DIENANEVKLKEIKNGRLAMVAMLGFIVQA 227
>gi|255550389|ref|XP_002516245.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223544731|gb|EEF46247.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 297
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 87/209 (41%), Positives = 109/209 (52%), Gaps = 30/209 (14%)
Query: 40 SVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL
Sbjct: 82 STVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPELLKWFAQAEL 135
Query: 99 IHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVE 152
+H RWAM AV GI + + + WF+AGA P +L QL+LMGWVE
Sbjct: 136 MHSRWAMLAVAGILIPEWLESLGFIENYNWFDAGAREYFADP---TTLFIVQLVLMGWVE 192
Query: 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPD 212
+RW D P +E P N + GYPGG +FDPL + V +
Sbjct: 193 GRRWADMIKPGCVDIEPTLP------NKTKPKPDVGYPGGLWFDPLMWGRGSPEPVMV-- 244
Query: 213 TEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
L+ EIK+ RLAM+A + F F+A
Sbjct: 245 ------LRTKEIKNGRLAMLAFVGFCFQA 267
>gi|388513951|gb|AFK45037.1| unknown [Medicago truncatula]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/222 (41%), Positives = 114/222 (51%), Gaps = 42/222 (18%)
Query: 34 VTSSKKSV--VVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
+ ++KK V V LPP + W P PEWLDGSLPGD+GFDPLGLG DP L
Sbjct: 44 IRNAKKGVSDVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPELL 97
Query: 91 KWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG-----ADPGAIAPFSFGS 139
KW +AEL+H RWAM V GI + + I W+ AG ADP +
Sbjct: 98 KWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADP--------TT 149
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L QL LMGWVE +RW D NP S +E P N N + GYPGG +FDP+
Sbjct: 150 LFIVQLALMGWVEGRRWADIVNPGSVDIEPKLP------NRPNPKPDVGYPGGLWFDPMQ 203
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ V + L+ EIK+ RLAM+A L F F+A
Sbjct: 204 WGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 237
>gi|384247025|gb|EIE20513.1| light-harvesting complex I protein [Coccomyxa subellipsoidea C-169]
Length = 259
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/238 (39%), Positives = 126/238 (52%), Gaps = 35/238 (14%)
Query: 26 ALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
A +G R + V + ++ W P GN P LDGSLPGD+GFDPL LG
Sbjct: 22 AAFSGKARTARVQARFVAVSAADRQVWFP-----GNAPAPH-LDGSLPGDFGFDPLSLGS 75
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-----GIP-WFEAGA-----DPGAIAP 134
DP LKW+++AEL+HGR AM AV GI + IP W++AG+ +P
Sbjct: 76 DPQLLKWFQQAELVHGRTAMTAVAGILFPAVATKAGVVNIPQWYDAGSVWVQNNPN---- 131
Query: 135 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKF 194
F F +LL Q++L GWVE+KRW+DF NP SQ+ + + AN GYPGGK
Sbjct: 132 FPFAALLFIQIILTGWVETKRWLDFKNPGSQADGSFLGVTDDFKGVAN-----GYPGGKL 186
Query: 195 FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
FDP L+ + +L + + EIK+ RLAMVA L F + A GK P+ L
Sbjct: 187 FDPFGLSRGSEG--------QLQKYQENEIKNGRLAMVAFLGFIAQHAATGKGPIDNL 236
>gi|388518909|gb|AFK47516.1| unknown [Lotus japonicus]
Length = 266
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 122/216 (56%), Gaps = 33/216 (15%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYR 94
T+ + + AA+ P+ +W+P L P +LDG+L GDYGFDPLGLG+DP L+WY
Sbjct: 43 TTPRCRQICAAMQPRPTWLPG------LDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYV 96
Query: 95 EAELIHGRWAMAAVVGIFVGQ-----AWSGIP-WFEAGADPGAIAPFSFG---SLLGTQL 145
+AEL+H R+AM V GI V S IP WFEAGA + F +L+ QL
Sbjct: 97 QAELVHARFAMLGVFGILVTDLLRVTGLSKIPVWFEAGA-----VKYEFTNTQTLIIVQL 151
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LLMG+ E+KR++DF P SQ+ E + + +F E GYPGG +PL LA IK
Sbjct: 152 LLMGFAETKRYMDFIGPGSQAKEGS--FFGLEASFEGL--EPGYPGGPLLNPLGLAKDIK 207
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ K+ EIK+ RLAMVA+L + +A
Sbjct: 208 NA---------RESKLKEIKNGRLAMVAILGIFVQA 234
>gi|326489913|dbj|BAJ94030.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 95/232 (40%), Positives = 123/232 (53%), Gaps = 33/232 (14%)
Query: 30 GTNRV--TSSKKSVVVAAL-PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKD 86
G++R T S S V L P + W P P WLDGSLPGD+GFDPLG G +
Sbjct: 46 GSHRTGATKSSLSTVCEPLGPDRPVWFPGTA------PPPWLDGSLPGDFGFDPLGFGSE 99
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFVG---QAW---SGIPWFEAGADPGAIAPFSFGSL 140
P L+W+ +AEL+HGRWAM AV GI + Q W W+ AG P+ +L
Sbjct: 100 PESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPW---TL 156
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
TQ+ LMGWVE +RW+D+ NP S +E P N N T + GYPGG +FD
Sbjct: 157 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFP------NRKNPTPDVGYPGGLWFD---- 206
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
G G E + L+ EIK+ RLAM+A + F+F+ G+ PLG L
Sbjct: 207 WGNWGRG----SPEPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLGNL 254
>gi|357450129|ref|XP_003595341.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355484389|gb|AES65592.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 91/222 (40%), Positives = 114/222 (51%), Gaps = 42/222 (18%)
Query: 34 VTSSKKSV--VVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
+ ++KK V V LPP + W P PEWLDGSLPG++GFDPLGLG DP L
Sbjct: 44 IRNAKKGVSDVCEPLPPDRPLWFPGSS------PPEWLDGSLPGNFGFDPLGLGSDPELL 97
Query: 91 KWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG-----ADPGAIAPFSFGS 139
KW +AEL+H RWAM V GI + + I W+ AG ADP +
Sbjct: 98 KWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADP--------TT 149
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L QL LMGWVE +RW D NP S +E P N N + GYPGG +FDP+
Sbjct: 150 LFIVQLALMGWVEGRRWADIVNPGSVDIEPKLP------NRPNPKPDVGYPGGLWFDPMQ 203
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ V + L+ EIK+ RLAM+A L F F+A
Sbjct: 204 WGRGSPEPVMV--------LRTKEIKNGRLAMLAFLGFCFQA 237
>gi|413939030|gb|AFW73581.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 315
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 114/202 (56%), Gaps = 33/202 (16%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P +LDG+LPGD+GFDPLGLG++P LKWY +AEL+H R+AMA V
Sbjct: 108 RATWLPG------LDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGV 161
Query: 109 VGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
GI S +P WFEAGA A F F + L QL LMG+ E+KR++DF
Sbjct: 162 AGILFTDLLRVSGNSDLPVWFEAGA-----AKFDFANTTALFFVQLFLMGFAETKRYMDF 216
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
NP SQ+ E + A A + GYPGG F+PL LA D E
Sbjct: 217 KNPGSQAEE----GTFIGLEAALAGQQPGYPGGPLFNPLGLAK---------DIENAHDE 263
Query: 220 KVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML F +A
Sbjct: 264 KLKEIKNGRLAMVAMLGFMVQA 285
>gi|194704284|gb|ACF86226.1| unknown [Zea mays]
Length = 269
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 114/202 (56%), Gaps = 33/202 (16%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P +LDG+LPGD+GFDPLGLG++P LKWY +AEL+H R+AMA V
Sbjct: 62 RATWLPG------LDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGV 115
Query: 109 VGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
GI S +P WFEAGA A F F + L QL LMG+ E+KR++DF
Sbjct: 116 AGILFTDLLRVSGNSDLPVWFEAGA-----AKFDFANTTALFFVQLFLMGFAETKRYMDF 170
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
NP SQ+ E + A A + GYPGG F+PL LA D E
Sbjct: 171 KNPGSQAEE----GTFIGLEAALAGQQPGYPGGPLFNPLGLAK---------DIENAHDE 217
Query: 220 KVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML F +A
Sbjct: 218 KLKEIKNGRLAMVAMLGFMVQA 239
>gi|226498858|ref|NP_001148187.1| LOC100281795 [Zea mays]
gi|195616580|gb|ACG30120.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 269
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 90/202 (44%), Positives = 114/202 (56%), Gaps = 33/202 (16%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P +LDG+LPGD+GFDPLGLG++P LKWY +AEL+H R+AMA V
Sbjct: 62 RATWLPG------LDPPPYLDGTLPGDFGFDPLGLGEEPEALKWYVQAELVHCRFAMAGV 115
Query: 109 VGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDF 159
GI S +P WFEAGA A F F + L QL LMG+ E+KR++DF
Sbjct: 116 AGILFTDLLRVSGNSDLPVWFEAGA-----AKFDFANTTALFFVQLFLMGFAETKRYMDF 170
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
NP SQ+ E + A A + GYPGG F+PL LA D E
Sbjct: 171 KNPGSQAEE----GTFIGLEAALAGQQPGYPGGPLFNPLGLAK---------DIENAHDE 217
Query: 220 KVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML F +A
Sbjct: 218 KLKEIKNGRLAMVAMLGFMVQA 239
>gi|357465507|ref|XP_003603038.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355492086|gb|AES73289.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 267
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/219 (42%), Positives = 123/219 (56%), Gaps = 29/219 (13%)
Query: 29 AGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPA 88
AGT K+ + AA + +W+P L P +LDG+LPGD+GFDPLGLG+DP
Sbjct: 40 AGTGVTPRCKQ--ICAAAQQRPTWLPG------LDPPTYLDGTLPGDFGFDPLGLGEDPE 91
Query: 89 FLKWYREAELIHGRWAMAAVVGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGSLLG 142
LKWY +AEL+H R+AM V+GI V + IP WFEAGA A + G+L+
Sbjct: 92 SLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNSIPIWFEAGAVKYEFA--NTGTLVV 149
Query: 143 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAG 202
QLLLMG+ E++R++DF +P SQ+ E S + E GYPGG +PL LA
Sbjct: 150 VQLLLMGYAETRRYMDFVSPGSQAKE----GSFFGLEASLGGLEPGYPGGPLLNPLGLAK 205
Query: 203 TIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
IK K+ EIK+ RLAMVA+L + +A
Sbjct: 206 DIKSA---------REWKLKEIKNGRLAMVAILGIFVQA 235
>gi|326523021|dbj|BAJ88556.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 270
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 94/232 (40%), Positives = 122/232 (52%), Gaps = 33/232 (14%)
Query: 30 GTNRV--TSSKKSVVVAAL-PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKD 86
G++R T S S V L P + W P P WLDGSLPGD+GFDPLG G +
Sbjct: 43 GSHRTGATKSSLSTVCEPLGPDRPVWFPGTA------PPPWLDGSLPGDFGFDPLGFGSE 96
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFVG---QAW---SGIPWFEAGADPGAIAPFSFGSL 140
P L+W+ +AEL+HGRWAM AV GI + Q W W+ AG P+ +L
Sbjct: 97 PESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPW---TL 153
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
TQ+ LMGWVE +RW+D+ NP S +E P N N T + GYPGG +FD
Sbjct: 154 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFP------NRKNPTPDVGYPGGLWFD---- 203
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
G G E + L+ EIK+ RLAM+A + F+F+ G+ PL L
Sbjct: 204 WGNWGRG----SPEPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQGPLDNL 251
>gi|326508082|dbj|BAJ86784.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326526845|dbj|BAK00811.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 273
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 93/227 (40%), Positives = 120/227 (52%), Gaps = 35/227 (15%)
Query: 30 GTNRV--TSSKKSVVVAAL-PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKD 86
G++R T S S V L P + W P P WLDGSLPGD+GFDPLG G +
Sbjct: 46 GSHRTGATKSSLSTVCEPLGPDRPVWFPGTA------PPPWLDGSLPGDFGFDPLGFGSE 99
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFVG---QAW---SGIPWFEAGADPGAIAPFSFGSL 140
P L+W+ +AEL+HGRWAM AV GI + Q W W+ AG P+ +L
Sbjct: 100 PESLRWFAQAELMHGRWAMLAVAGILIPEILQKWGFMEEFSWYTAGEREYFADPW---TL 156
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
TQ+ LMGWVE +RW+D+ NP S +E P N N T + GYPGG +FD
Sbjct: 157 FVTQMALMGWVEGRRWMDYLNPGSVDIEPRFP------NRKNPTPDVGYPGGLWFD---- 206
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE---AGQG 244
G G E + L+ EIK+ RLAM+A + F+F+ GQG
Sbjct: 207 WGNWGRG----SPEPVMVLRTKEIKNGRLAMLAFVGFWFQVVYTGQG 249
>gi|302851787|ref|XP_002957416.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300257220|gb|EFJ41471.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 241
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 107/193 (55%), Gaps = 19/193 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV----GQAWSGI 120
P LDGSL GDYGFDPL LG++P LKWY +AEL+HGR+AM GI + + G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 121 P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
P W++AG F +LL TQL LMGW E+KRW DF NP SQ ++ +
Sbjct: 100 PEWYDAGKVVVEKNNIDFPTLLITQLYLMGWAETKRWYDFKNPGSQGDGSFLGFTDEFKG 159
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
E GYPGG+FFDP+ L+ D +K K EIK+ RLAM+A L F
Sbjct: 160 L-----ENGYPGGRFFDPMGLSRG--------DADKYKEYKQKEIKNGRLAMIACLGFAA 206
Query: 240 E-AGQGKTPLGAL 251
+ A GK PL L
Sbjct: 207 QYAATGKGPLDNL 219
>gi|297844880|ref|XP_002890321.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
gi|297336163|gb|EFH66580.1| hypothetical protein ARALYDRAFT_472139 [Arabidopsis lyrata subsp.
lyrata]
Length = 269
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 88/236 (37%), Positives = 119/236 (50%), Gaps = 33/236 (13%)
Query: 13 LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGS 71
+ S+ GG+ S+ L+ + S V LPP + W P PEWLDGS
Sbjct: 30 VASASPTGGRMSERLVVAR---AGKEVSSVCEPLPPDRPLWFPGSA------PPEWLDGS 80
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD+GFDPLGLG DP LKW+ +AELIH RWAM AV GI + + + W+EA
Sbjct: 81 LPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWAMLAVTGILIPECLERLGFIENFSWYEA 140
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G+ +L Q++LMGW E +RW D P S +E P + N
Sbjct: 141 GSREYFA---DSTTLFVAQMVLMGWAEGRRWADLIKPGSVDIEPKYP------HKVNPKP 191
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ GYPGG +FD + + V + L+ EIK+ RLAM+A + F F+A
Sbjct: 192 DVGYPGGLWFDFMMWGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGFCFQA 239
>gi|388510254|gb|AFK43193.1| unknown [Lotus japonicus]
Length = 213
Score = 133 bits (334), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 87/205 (42%), Positives = 117/205 (57%), Gaps = 33/205 (16%)
Query: 46 LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 105
+ P+ +W+P L P +LDG+L GDYGFDPLGLG+DP L+WY +AEL+H R+AM
Sbjct: 1 MQPRPTWLPG------LDPPAYLDGTLAGDYGFDPLGLGEDPESLRWYVQAELVHARFAM 54
Query: 106 AAVVGIFVGQ-----AWSGIP-WFEAGADPGAIAPFSFG---SLLGTQLLLMGWVESKRW 156
V GI V S IP WFEAGA + F +L+ QLLLMG+ E+KR+
Sbjct: 55 LGVFGILVTDLLRVTGLSKIPVWFEAGA-----VKYEFTNTQTLIIVQLLLMGFAETKRY 109
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+DF +P SQ+ E + + +F E GYPGG +PL LA IK+
Sbjct: 110 MDFISPGSQAKEGS--FFGLEASFEGL--EPGYPGGPLLNPLGLAKDIKNA--------- 156
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVA+L + +A
Sbjct: 157 RESKLKEIKNGRLAMVAILGIFVQA 181
>gi|27754356|gb|AAO22627.1| putative light-harvesting chlorophyll a/b binding protein
[Arabidopsis thaliana]
Length = 270
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 110/206 (53%), Gaps = 24/206 (11%)
Query: 40 SVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL
Sbjct: 55 SSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAEL 108
Query: 99 IHGRWAMAAVVGIFVGQAWSGIPWFEAGA--DPGAIAPFSFG-SLLGTQLLLMGWVESKR 155
IH RWAM AV GI + + + + E + D G+ F+ +L Q++LMGW E +R
Sbjct: 109 IHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W D P S +E P + N + GYPGG +FD + + V +
Sbjct: 169 WADLIKPGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV----- 217
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
L+ EIK+ RLAM+A L F F+A
Sbjct: 218 ---LRTKEIKNGRLAMLAFLGFCFQA 240
>gi|15221956|ref|NP_173349.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
gi|21554357|gb|AAM63464.1| PSI type II chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
gi|56381917|gb|AAV85677.1| At1g19150 [Arabidopsis thaliana]
gi|58331805|gb|AAW70400.1| At1g19150 [Arabidopsis thaliana]
gi|332191690|gb|AEE29811.1| light-harvesting complex I chlorophyll a/b binding protein 2
[Arabidopsis thaliana]
Length = 270
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 110/206 (53%), Gaps = 24/206 (11%)
Query: 40 SVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL
Sbjct: 55 SSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAEL 108
Query: 99 IHGRWAMAAVVGIFVGQAWSGIPWFEAGA--DPGAIAPFSFG-SLLGTQLLLMGWVESKR 155
IH RWAM AV GI + + + + E + D G+ F+ +L Q++LMGW E +R
Sbjct: 109 IHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W D P S +E P + N + GYPGG +FD + + V +
Sbjct: 169 WADLIKPGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV----- 217
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
L+ EIK+ RLAM+A L F F+A
Sbjct: 218 ---LRTKEIKNGRLAMLAFLGFCFQA 240
>gi|8954053|gb|AAF82226.1|AC069143_2 Contains similarity to a chlorophyll a/b-binding protein type II
from Arabidopsis thaliana gi|S46295 and contains a
chlorophyll A-B binding proteins PF|00504 domain
[Arabidopsis thaliana]
Length = 267
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 84/206 (40%), Positives = 110/206 (53%), Gaps = 24/206 (11%)
Query: 40 SVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
S V LPP + W P PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL
Sbjct: 55 SSVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAEL 108
Query: 99 IHGRWAMAAVVGIFVGQAWSGIPWFEAGA--DPGAIAPFSFG-SLLGTQLLLMGWVESKR 155
IH RWAM AV GI + + + + E + D G+ F+ +L Q++LMGW E +R
Sbjct: 109 IHSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRR 168
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W D P S +E P + N + GYPGG +FD + + V +
Sbjct: 169 WADLIKPGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV----- 217
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
L+ EIK+ RLAM+A L F F+A
Sbjct: 218 ---LRTKEIKNGRLAMLAFLGFCFQA 240
>gi|224069184|ref|XP_002326295.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
gi|222833488|gb|EEE71965.1| light-harvesting complex I protein Lhca6 [Populus trichocarpa]
Length = 261
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 119/235 (50%), Gaps = 36/235 (15%)
Query: 16 SFINGGKKSQALLAGTNRVTSSK-KSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLP 73
S + +K QA+ RV ++K S V LPP + W P PEWLDGSLP
Sbjct: 24 SLLGKIEKCQAVKV---RVNATKGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLP 74
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW-------SGIPWFEAG 126
GD+GFDPLGLG DP LKW+ +AELIHGRWAM A GI + + W WF+AG
Sbjct: 75 GDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPE-WLERLGFIDNFNWFDAG 133
Query: 127 ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
P +L QL+LMGW+E +RW D P ++ P + +
Sbjct: 134 TREYFADP---TTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLP------HKTKPKPD 184
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
GYPGG +FDP E + ++ EIK+ RLAM+A + F+F+A
Sbjct: 185 VGYPGGLWFDPWNWGRG--------SPEPVMAIRTKEIKNGRLAMLAFVGFWFQA 231
>gi|118489607|gb|ABK96605.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 261
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 119/235 (50%), Gaps = 36/235 (15%)
Query: 16 SFINGGKKSQALLAGTNRVTSSK-KSVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLP 73
S + +K QA+ RV ++K S V LPP + W P PEWLDGSLP
Sbjct: 24 SLLGKIEKCQAVKV---RVNATKGVSSVCEPLPPDRPLWFPGSS------PPEWLDGSLP 74
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW-------SGIPWFEAG 126
GD+GFDPLGLG DP LKW+ +AELIHGRWAM A GI + + W WF+AG
Sbjct: 75 GDFGFDPLGLGSDPESLKWFAQAELIHGRWAMLAAAGILIPE-WLERLGFIDNFNWFDAG 133
Query: 127 ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
P +L QL+LMGW+E +RW D P ++ P + +
Sbjct: 134 TREYFADP---TTLFVVQLILMGWIEGRRWADMIKPGCVDIDPKLP------HKTKPKPD 184
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
GYPGG +FDP E + ++ EIK+ RLAM+A + F+F+A
Sbjct: 185 IGYPGGLWFDPWNWGRG--------SPEPVMAIRTKEIKNGRLAMLAFVGFWFQA 231
>gi|21593722|gb|AAM65689.1| light-harvesting complex protein [Arabidopsis thaliana]
Length = 256
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 136/258 (52%), Gaps = 41/258 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVK 57
MA G + G F++ + + +++ T R++S K + + + +W+P +
Sbjct: 1 MAVVLRGGITGG----FLHHRRDASSVI--TRRISSVKAAGGGINPTVAVERATWLPGLN 54
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
P +LDG+L GDYGFDPLGLG+DP LKWY +AEL+H R+AM V GI
Sbjct: 55 ------PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 118 --SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GI W+EAGA F F S L+ Q LLMG+ E+KR++DF +P SQ+ E
Sbjct: 109 RTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKE 163
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ + A A E GYPGG +PL LA +K+ K+ EIK+ R
Sbjct: 164 GSFFFGIEA---ALEGLEPGYPGGPLLNPLGLAKDVKNA---------HDWKLKEIKNGR 211
Query: 229 LAMVAMLIFYFEAGQGKT 246
LAM+AML F+ +A T
Sbjct: 212 LAMMAMLGFFVQASVTHT 229
>gi|225458605|ref|XP_002284724.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|302142320|emb|CBI19523.3| unnamed protein product [Vitis vinifera]
Length = 264
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/214 (43%), Positives = 119/214 (55%), Gaps = 35/214 (16%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
S +VV A P +W+P L P +L+G+L GD+GFDPLGLG+DP L+WY +A
Sbjct: 46 SHGTVVQAQQRP--TWLPG------LDPPPYLNGTLAGDFGFDPLGLGEDPENLRWYVQA 97
Query: 97 ELIHGRWAMAAVVGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGS---LLGTQLLL 147
EL+H R+AMA V GI V S +P W+EAGA F F S L QL+L
Sbjct: 98 ELVHARFAMAGVAGILVTDLLRVTGISNLPVWYEAGA-----VKFEFASTEALFIVQLIL 152
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MG+VE+KR++DF NP SQ+ E S A E GYPGG +PL LA IK+
Sbjct: 153 MGFVETKRYMDFTNPGSQAKE----GSFFGLEAALEGLEPGYPGGPLLNPLGLARDIKNA 208
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML + +A
Sbjct: 209 ---------HDWKLKEIKNGRLAMVAMLGVFVQA 233
>gi|15220077|ref|NP_175137.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|30693978|ref|NP_849778.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|19699116|gb|AAL90924.1| At1g45474/F2G19.4 [Arabidopsis thaliana]
gi|62320735|dbj|BAD95402.1| light-harvesting complex protein [Arabidopsis thaliana]
gi|332193996|gb|AEE32117.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
gi|332193997|gb|AEE32118.1| photosystem I light harvesting complex protein 5 [Arabidopsis
thaliana]
Length = 256
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 135/258 (52%), Gaps = 41/258 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVK 57
MA G + G F++ + + +++ T R++S K + + + +W+P +
Sbjct: 1 MAVVLRGGITGG----FLHHRRDASSVI--TRRISSVKAAGGGINPTVAVERATWLPGLN 54
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
P +LDG+L GDYGFDPLGLG+DP LKWY +AEL+H R+AM V GI
Sbjct: 55 ------PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 118 --SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GI W+EAGA F F S L+ Q LLMG+ E+KR++DF +P SQ+ E
Sbjct: 109 RTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKE 163
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ + A A E GYPGG +PL LA D + K+ EIK+ R
Sbjct: 164 GSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGR 211
Query: 229 LAMVAMLIFYFEAGQGKT 246
LAM+AML F+ +A T
Sbjct: 212 LAMMAMLGFFVQASVTHT 229
>gi|224137478|ref|XP_002327136.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
gi|222835451|gb|EEE73886.1| light-harvesting complex I protein Lhca5 [Populus trichocarpa]
Length = 266
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/216 (41%), Positives = 119/216 (55%), Gaps = 33/216 (15%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYR 94
+S++ + VV + +W+P L P +LDG+L GD+GFDPLGLG+DP LKWY
Sbjct: 43 SSTRCTPVVVHAQQRPTWLPG------LDPPPYLDGTLAGDFGFDPLGLGEDPQSLKWYV 96
Query: 95 EAELIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGS---LLGTQL 145
+AEL+H R+AMA V GI +GI W+EAGA F F S L+ QL
Sbjct: 97 QAELVHARFAMAGVAGILFTDLLRVTGIRKLPVWYEAGA-----VKFEFASTRTLIVVQL 151
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LLMG+ E+KR++DF +P SQ+ E S A E GYPGG +PL LA
Sbjct: 152 LLMGFAETKRYMDFVSPGSQAKE----GSFFGLESALEGLEPGYPGGPLLNPLGLAR--- 204
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D E K+ EIK+ RLAMVAM+ + +A
Sbjct: 205 ------DIENAHVWKLKEIKNGRLAMVAMVGIFVQA 234
>gi|115472983|ref|NP_001060090.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|34393511|dbj|BAC83072.1| putative photosystem I antenna protein [Oryza sativa Japonica
Group]
gi|113611626|dbj|BAF22004.1| Os07g0577600 [Oryza sativa Japonica Group]
gi|125558916|gb|EAZ04452.1| hypothetical protein OsI_26600 [Oryza sativa Indica Group]
gi|125600834|gb|EAZ40410.1| hypothetical protein OsJ_24861 [Oryza sativa Japonica Group]
gi|215678915|dbj|BAG96345.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679008|dbj|BAG96438.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679048|dbj|BAG96478.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686399|dbj|BAG87660.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737439|dbj|BAG96569.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737698|dbj|BAG96828.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737734|dbj|BAG96864.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767334|dbj|BAG99562.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 263
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 87/234 (37%), Positives = 118/234 (50%), Gaps = 30/234 (12%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVV-AALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
SSF+ G +S LL +S++ S V AA P + W P P WLDGSLP
Sbjct: 23 SSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFPGST------PPPWLDGSLP 76
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGA 127
GD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 77 GDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 136
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+L +L+L+GW E +RW D P + + P N +
Sbjct: 137 QQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDV 187
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +F+A
Sbjct: 188 GYPGGLWFDPL--------GWGTGSPEKIKELRTKEIKNGRLAMLAVMGAWFQA 233
>gi|159467559|ref|XP_001691959.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278686|gb|EDP04449.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 288
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV----GQAWSGI 120
P LDGSL GDYGFDPL LG++P LKWY +AEL+HGR+AM GI + + G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 121 P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
P W++AG F +L+ Q LMGW E+KRW DF NP SQ+ ++ +
Sbjct: 100 PEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKG 159
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
E GYPGG+FFDP+ G+ D K K E+K+ RLAM+A L F
Sbjct: 160 L-----ENGYPGGRFFDPM--------GLSRGDAAKYQEYKQKEVKNGRLAMIACLGFAA 206
Query: 240 E-AGQGKTPLGAL 251
+ A GK PL L
Sbjct: 207 QYAATGKGPLDNL 219
>gi|4741942|gb|AAD28768.1|AF134121_1 Lhca5 protein [Arabidopsis thaliana]
Length = 256
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/258 (36%), Positives = 135/258 (52%), Gaps = 41/258 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVK 57
MA G + G F++ + + +++ T R++S K + + + +W+P +
Sbjct: 1 MAVVLRGGITGG----FLHHRRDASSVI--TRRISSVKAAGGGINPTVAVERATWLPGLN 54
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
P +LDG+L GDYGFDPLGLG+DP LKWY +AEL+H R+AM V GI
Sbjct: 55 ------PPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 118 --SGIP----WFEAGADPGAIAPFSFG---SLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GI W+EAGA F F +L+ Q LLMG+ E+KR++DF +P SQ+ E
Sbjct: 109 RTTGIRNLPVWYEAGA-----VKFDFACTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKE 163
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ + A A E GYPGG +PL LA D + K+ EIK+ R
Sbjct: 164 GSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGR 211
Query: 229 LAMVAMLIFYFEAGQGKT 246
LAM+AML F+ +A T
Sbjct: 212 LAMMAMLGFFVQASVTHT 229
>gi|302828616|ref|XP_002945875.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902596|gb|AAD55568.1|AF110786_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300268690|gb|EFJ52870.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 243
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 130/228 (57%), Gaps = 28/228 (12%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R S+K+VV ++SW+P + +L +P L ++ G++GFDPLGLGKD L+W
Sbjct: 13 RPAVSRKAVVTCV--ARQSWLPGSEIPKHLDSPAAL--AMAGNFGFDPLGLGKDAEALRW 68
Query: 93 YREAELIHGRWAMAAVVGIFV------GQAWSGIPWFEAG--ADPGAIAPFSFGSLLGTQ 144
Y++AEL+H R AM AV GI + A + W++AG A + AP FG+LL Q
Sbjct: 69 YQQAELVHARTAMTAVAGILIPGLLTKAGALNVPEWYDAGKVAIESSFAP--FGALLAVQ 126
Query: 145 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTI 204
L L G+VE+KRW DF P SQ+ + + TA FA TG+ GYPGG FDPL L+
Sbjct: 127 LFLTGFVEAKRWQDFKKPGSQAEKGSFLGFETA--FAG-TGDNGYPGG-IFDPLGLS--- 179
Query: 205 KDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
D +KL K+ EIK+ RLAMVA L F + GK P+ L
Sbjct: 180 ------KDADKLADWKLKEIKNGRLAMVAFLGFTAQKFATGKGPIDNL 221
>gi|297846882|ref|XP_002891322.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
gi|297337164|gb|EFH67581.1| light-harvesting complex protein [Arabidopsis lyrata subsp. lyrata]
Length = 256
Score = 131 bits (329), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/258 (36%), Positives = 135/258 (52%), Gaps = 41/258 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVK 57
MA G + G F++ + + +++ T R++S + + + + +W+P
Sbjct: 1 MAVVLRGGITGG----FLHQRRDTSSVI--TRRISSVRAAGGGINPTVAVERATWLPG-- 52
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 117
L P +LDG L GDYGFDPLGLG+DP L+WY +AEL+H R+AM V GI
Sbjct: 53 ----LDPPPYLDGKLAGDYGFDPLGLGEDPESLRWYVQAELVHSRFAMLGVAGILFTDLL 108
Query: 118 --SGIP----WFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+GI W+EAGA F F S L+ Q LLMG+ E+KR+VD+ +P SQ+ E
Sbjct: 109 RTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRYVDYVSPGSQAKE 163
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ + A A E GYPGG +PL LA IK+ K+ EIK+ R
Sbjct: 164 GSFFFGIEA---ALEGLEPGYPGGPLLNPLGLAKDIKNA---------HDWKLKEIKNGR 211
Query: 229 LAMVAMLIFYFEAGQGKT 246
LAM+AML F+ +A T
Sbjct: 212 LAMMAMLGFFVQASVTHT 229
>gi|222423311|dbj|BAH19631.1| AT1G45474 [Arabidopsis thaliana]
Length = 248
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 91/242 (37%), Positives = 130/242 (53%), Gaps = 37/242 (15%)
Query: 17 FINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
F++ + + +++ T R++S K + + + +W+P + P +LDG+L
Sbjct: 5 FLHHRRDASSVI--TRRISSVKAAGGGINPTVAVERATWLPGLN------PPPYLDGNLA 56
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP----WFEAGA 127
GDYGFDPLGLG+DP LKWY +AEL+H R+AM V GI +GI W+EAGA
Sbjct: 57 GDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGILFTDLLRTTGIRNLPVWYEAGA 116
Query: 128 DPGAIAPFSFGS---LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
F F S L+ Q LLMG+ E+KR++DF +P SQ+ E + + A A
Sbjct: 117 -----VKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFFGLEA---ALEG 168
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQG 244
E GYPGG +PL LA D + K+ EIK+ RLAM+AML F+ +A
Sbjct: 169 LEPGYPGGPLLNPLGLA---------KDVQNAHDWKLKEIKNGRLAMMAMLGFFVQASVT 219
Query: 245 KT 246
T
Sbjct: 220 HT 221
>gi|27542569|gb|AAO16495.1| light-harvesting complex I protein [Chlamydomonas reinhardtii]
Length = 241
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV----GQAWSGI 120
P LDGSL GDYGFDPL LG++P LKWY +AEL+HGR+AM GI + + G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 121 P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
P W++AG F +L+ Q LMGW E+KRW DF NP SQ+ ++ +
Sbjct: 100 PEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKG 159
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
E GYPGG+FFDP+ L+ D K K E+K+ RLAM+A L F
Sbjct: 160 L-----ENGYPGGRFFDPMGLSRG--------DAAKYQEYKQKEVKNGRLAMIACLGFAA 206
Query: 240 E-AGQGKTPLGAL 251
+ A GK PL L
Sbjct: 207 QYAATGKGPLDNL 219
>gi|40714521|dbj|BAD06924.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 241
Score = 130 bits (328), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/193 (42%), Positives = 105/193 (54%), Gaps = 19/193 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV----GQAWSGI 120
P LDGSL GDYGFDPL LG++P LKWY +AEL+HGR+AM GI + + G
Sbjct: 40 PAHLDGSLAGDYGFDPLFLGQEPQTLKWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 121 P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
P W++AG F +L+ Q LMGW E+KRW DF NP SQ+ ++ +
Sbjct: 100 PEWYDAGKVVVEKNNIDFPTLMVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKG 159
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
E GYPGG+FFDP+ L+ D K K E+K+ RLAM+A L F
Sbjct: 160 L-----ENGYPGGRFFDPMGLSRG--------DAAKYQEYKQKEVKNGRLAMIACLGFAA 206
Query: 240 E-AGQGKTPLGAL 251
+ A GK PL L
Sbjct: 207 QYAATGKGPLDNL 219
>gi|124388816|gb|ABN10530.1| Lhca5 protein [Gentiana lutea]
Length = 272
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/252 (36%), Positives = 125/252 (49%), Gaps = 42/252 (16%)
Query: 8 AVLNGLGSSFINGGKKSQALLAGTNRVTS------------SKKSVVVAALPPKKSWIPA 55
+ L S F N Q L N+VTS ++ V + +W+P
Sbjct: 13 SALKDSSSIFTNNINTYQTL--SLNKVTSLPAKSRGIFHSHGRRLCTVVRAQQRPTWLPG 70
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
+ P +LDG+L GD+GFDPLGLG+DP LKWY +AEL+H R+AMA V GI
Sbjct: 71 LDP------PPYLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTD 124
Query: 116 -----AWSGIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
S +P W+EAGA A + +L Q+LLMG+VE+KR++DF NP SQ
Sbjct: 125 LLRTTGLSNLPVWYEAGATKFQFA--NTTTLFIVQMLLMGFVETKRYMDFKNPGSQGEAS 182
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229
E E GYPGG +PL +A IK+ K+ EIK+ RL
Sbjct: 183 FFGLEAALEGL-----EPGYPGGPILNPLGIAKDIKNA---------PEWKLKEIKNGRL 228
Query: 230 AMVAMLIFYFEA 241
AMVA+L + +A
Sbjct: 229 AMVAILGIFVQA 240
>gi|115479363|ref|NP_001063275.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|51091350|dbj|BAD36085.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|51091400|dbj|BAD36143.1| putative chlorophyll a/b-binding protein type II [Oryza sativa
Japonica Group]
gi|113631508|dbj|BAF25189.1| Os09g0439500 [Oryza sativa Japonica Group]
gi|215695401|dbj|BAG90592.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 264
Score = 130 bits (327), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 80/183 (43%), Positives = 103/183 (56%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA---W---S 118
P WLDGSLPGD+GFDPLGLG DP L+W+ +AEL+H RWAM AV GI V + W
Sbjct: 69 PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFME 128
Query: 119 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W +AGA P+ +L +Q+ LMGW E +RW D+ NP +VE P
Sbjct: 129 DYSWIDAGARDYFADPW---TLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLP------ 179
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N N + GYPGG +FD G G E + L+ EIK+ RLAM+A + F+
Sbjct: 180 NRRNPVPDVGYPGGLWFD----WGNWGRG----SPEPVMVLRTKEIKNGRLAMLAFVGFW 231
Query: 239 FEA 241
F+A
Sbjct: 232 FQA 234
>gi|357153802|ref|XP_003576571.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 272
Score = 130 bits (326), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 85/207 (41%), Positives = 110/207 (53%), Gaps = 32/207 (15%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W P P WLDGSLPGD+GFDPLGLG +P L+W+ +AEL+H RWAM
Sbjct: 65 PDRPVWFPGTS------PPPWLDGSLPGDFGFDPLGLGSEPETLRWFAQAELMHSRWAML 118
Query: 107 AVVGIFVG---QAW---SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 160
AV GI + Q W W+ AG P+ +L Q+ LMGW E +RW+D+
Sbjct: 119 AVAGILIPEILQKWGFMEEFSWYTAGEREYFADPW---TLFIAQMALMGWAEGRRWMDYL 175
Query: 161 NPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLK 220
NP S +E P N N T + GYPGG +FD G G E + L+
Sbjct: 176 NPGSVDIEPRFP------NRKNPTPDVGYPGGLWFD----WGNWGRG----SPEPVMVLR 221
Query: 221 VAEIKHARLAMVAMLIFYFEA---GQG 244
EIK+ RLAM+A + F+F+A GQG
Sbjct: 222 TKEIKNGRLAMLAFVGFWFQAVYTGQG 248
>gi|414589586|tpg|DAA40157.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 232
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 117/228 (51%), Gaps = 36/228 (15%)
Query: 30 GTNRVTSSKK--SVVVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKD 86
G R ++K S V L P + W P P WLDGSLPGD+GFDPLGLG +
Sbjct: 4 GRRRANATKGGVSTVCEPLGPDRPIWFPGSS------PPPWLDGSLPGDFGFDPLGLGSE 57
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGADPGAIAPFSFGS 139
P L+W+ +AEL+HGRWAM A GI V G +G WF+AG+ P+ +
Sbjct: 58 PELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFIDAGFSWFDAGSREYFADPW---T 114
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L +Q+ LMGW E +RW D+ P +E P N N + GYPGG +FD
Sbjct: 115 LFVSQMALMGWAEGRRWADYLRPGCVDIEPRFP------NRKNPVPDVGYPGGLWFDWAN 168
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA---GQG 244
+ V + L+ EIK+ RLAM+A + F+F+A GQG
Sbjct: 169 WGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGFWFQAVYTGQG 208
>gi|168052237|ref|XP_001778557.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670011|gb|EDQ56587.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 273
Score = 129 bits (324), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/262 (34%), Positives = 130/262 (49%), Gaps = 36/262 (13%)
Query: 1 MAAATSGAVLNGLGSSFI--NGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKG 58
+ A+++ AV+ G +S + + G +LLAG R + +AA P ++ +PA
Sbjct: 5 VCASSNVAVVAGPSTSKVVNSAGPARTSLLAGRVR-----RVTRIAASPQAEAPVPAQPS 59
Query: 59 GGNLINP---------EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVV 109
N P EWLDGSLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM
Sbjct: 60 LPNNDRPLWFPGSQPPEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAA 119
Query: 110 GIFVGQAWS-----GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
GIF+ +A + P + D + +L +++L W E +RW D NP
Sbjct: 120 GIFIPEALTKAGILNTPSWTVAGDQQYFTDAT--TLFVIEIILFAWAEGRRWADIINPGC 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+V+ P ++ + GYPGG +FDPL T D KL L+ EI
Sbjct: 178 VNVDPVFPNNKLTGT------DVGYPGGLWFDPLGWGQT-------GDAAKLKDLRTREI 224
Query: 225 KHARLAMVAMLIFYFEAGQGKT 246
K+ RLAM+A+L +A T
Sbjct: 225 KNGRLAMLAVLGAVVQANYTHT 246
Score = 37.7 bits (86), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 69 DGSLPGDYGFDPLGLGK--DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PW 122
D PG FDPLG G+ D A LK R E+ +GR AM AV+G V ++
Sbjct: 193 DVGYPGGLWFDPLGWGQTGDAAKLKDLRTREIKNGRLAMLAVLGAVVQANYTHTGPIDNL 252
Query: 123 FEAGADPGAIAPFSFGSLLG 142
ADPG F+ +L+G
Sbjct: 253 LAHLADPGHNTIFALSNLVG 272
>gi|226495517|ref|NP_001141336.1| uncharacterized protein LOC100273427 [Zea mays]
gi|194704056|gb|ACF86112.1| unknown [Zea mays]
Length = 271
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 105/190 (55%), Gaps = 27/190 (14%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P WLDGSLPGD+GFDPLGLG +P L+W+ +AEL+HGRWAM A GI V G
Sbjct: 75 PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFID 134
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
+G WF+AG+ P+ +L +Q+ LMGW E +RW D+ P +E P
Sbjct: 135 AGFSWFDAGSREYFADPW---TLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFP----- 186
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
N N + GYPGG +FD + V + L+ EIK+ RLAM+A + F
Sbjct: 187 -NRRNPVPDVGYPGGLWFDWANWGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGF 237
Query: 238 YFEA---GQG 244
+F+A GQG
Sbjct: 238 WFQAVYTGQG 247
>gi|414589583|tpg|DAA40154.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
gi|414589584|tpg|DAA40155.1| TPA: hypothetical protein ZEAMMB73_160322 [Zea mays]
Length = 271
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 105/190 (55%), Gaps = 27/190 (14%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P WLDGSLPGD+GFDPLGLG +P L+W+ +AEL+HGRWAM A GI V G
Sbjct: 75 PPWLDGSLPGDFGFDPLGLGSEPELLRWFAQAELMHGRWAMLAAAGILVPDLLARWGFID 134
Query: 118 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
+G WF+AG+ P+ +L +Q+ LMGW E +RW D+ P +E P
Sbjct: 135 AGFSWFDAGSREYFADPW---TLFVSQMALMGWAEGRRWADYLRPGCVDIEPRFP----- 186
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
N N + GYPGG +FD + V + L+ EIK+ RLAM+A + F
Sbjct: 187 -NRKNPVPDVGYPGGLWFDWANWGRGSPEPVMV--------LRTKEIKNGRLAMLAFVGF 237
Query: 238 YFEA---GQG 244
+F+A GQG
Sbjct: 238 WFQAVYTGQG 247
>gi|168060917|ref|XP_001782439.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666110|gb|EDQ52774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 210
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/200 (39%), Positives = 104/200 (52%), Gaps = 26/200 (13%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 111
W P K PEWLDGSLPGD+GFDPLGLG DP LKW+ +AEL+H RWAM GI
Sbjct: 5 WFPGSKA------PEWLDGSLPGDFGFDPLGLGSDPELLKWFVQAELVHCRWAMLGAAGI 58
Query: 112 FVGQAWS-----GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
F+ +A + P + D A + +L +L+L W E +RW D NP +
Sbjct: 59 FIPEALTKAGILNTPSWNVAGDQQYFADPT--TLFVIELILFAWAEGRRWADIVNPGCVN 116
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
V+ P ++ + GYPGG +FDPL T D +KL L+ EIK+
Sbjct: 117 VDPVFPNNKLTGT------DVGYPGGLWFDPLGWGQT-------KDAKKLKELRTKEIKN 163
Query: 227 ARLAMVAMLIFYFEAGQGKT 246
RLAM+A+L +A T
Sbjct: 164 GRLAMLAVLGAVVQANYTHT 183
Score = 37.0 bits (84), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 69 DGSLPGDYGFDPLGLG--KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PW 122
D PG FDPLG G KD LK R E+ +GR AM AV+G V ++
Sbjct: 130 DVGYPGGLWFDPLGWGQTKDAKKLKELRTKEIKNGRLAMLAVLGAVVQANYTHTGPIDNL 189
Query: 123 FEAGADPGAIAPFSFGSLLG 142
ADPG F+ +L+G
Sbjct: 190 LAHLADPGHNTIFALSNLVG 209
>gi|218202214|gb|EEC84641.1| hypothetical protein OsI_31519 [Oryza sativa Indica Group]
Length = 264
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 79/183 (43%), Positives = 102/183 (55%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA---W---S 118
P WLDGSLPGD+GFDPLGLG DP L+W+ +AEL+H RWAM A GI V + W
Sbjct: 69 PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAAAGILVPEVLEKWGFME 128
Query: 119 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W +AGA P+ +L +Q+ LMGW E +RW D+ NP +VE P
Sbjct: 129 DYSWIDAGARDYFADPW---TLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLP------ 179
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N N + GYPGG +FD G G E + L+ EIK+ RLAM+A + F+
Sbjct: 180 NRRNPVPDVGYPGGLWFD----WGNWGRG----SPEPVMVLRTKEIKNGRLAMLAFVGFW 231
Query: 239 FEA 241
F+A
Sbjct: 232 FQA 234
>gi|115765|sp|P10708.1|CB12_SOLLC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCI type II CAB-7; Flags: Precursor
gi|19180|emb|CAA32197.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|170431|gb|AAA34159.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|226546|prf||1601518A chlorophyll a/b binding protein II
Length = 270
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 120/241 (49%), Gaps = 30/241 (12%)
Query: 6 SGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINP 65
+G+++ +SF+ GG++ + T S +V VAA P + W P P
Sbjct: 23 NGSIVGTTKASFL-GGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGST------PP 75
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120
WLDGSLPGD+GFDPLGL DP L+W ++AEL+H RWAM GIF+ + + I
Sbjct: 76 PWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNT 135
Query: 121 -PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
W+ AG +L +L+L+GW E +RW D P + + P N
Sbjct: 136 PSWYTAGEQEYFT---DTTTLFIVELVLIGWAEGRRWADIIKPGCVNTDPIFP------N 186
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
+ GYPGG +FDPL G K+ L+ EIK+ RLAM+A++ +F
Sbjct: 187 NKLTGTDVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWF 238
Query: 240 E 240
+
Sbjct: 239 Q 239
Score = 37.4 bits (85), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G PA +K R E+ +GR AM AV+G + ++G F
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 252
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 253 AHLADPGHATIFA 265
>gi|168057356|ref|XP_001780681.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667846|gb|EDQ54465.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 208
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/188 (45%), Positives = 105/188 (55%), Gaps = 21/188 (11%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-----GQAWSG 119
P LDG+L GD+GFDPLGLG+DP L+WY +AEL+H R+AMA V GI +
Sbjct: 12 PAHLDGTLAGDFGFDPLGLGQDPQDLRWYVQAELVHSRFAMAGVAGILFTDLLRASGRTD 71
Query: 120 IP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
IP WFEAGA A + +L QL+LMG+VE+KRW+D P SQ+ E S
Sbjct: 72 IPVWFEAGATKFDFADTT--TLFVVQLILMGFVETKRWMDIVKPGSQAAE----DSFFGF 125
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
A E GYPGG F+PL A D K L+ EIK+ RLAMVAM+ F
Sbjct: 126 EAAFEGLETGYPGGPLFNPLGFAN---------DPTKPQPLRWKEIKNGRLAMVAMVGFM 176
Query: 239 FEAGQGKT 246
+A KT
Sbjct: 177 VQAYVTKT 184
>gi|541565|gb|AAA57542.1| PSI type II chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 271
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 80/205 (39%), Positives = 109/205 (53%), Gaps = 22/205 (10%)
Query: 40 SVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELI 99
S V LPP + + G ++ WLDGSLPGD+GFDP GLG DP LKW+ +AELI
Sbjct: 56 SSVCEPLPPDRPY-----GSLVALHLNWLDGSLPGDFGFDPFGLGSDPDTLKWFAQAELI 110
Query: 100 HGRWAMAAVVGIFVGQAWSGIPWFEAGA--DPGAIAPFSFG-SLLGTQLLLMGWVESKRW 156
H RWAM AV GI + + + + E + D G+ F+ +L Q++LMGW E +RW
Sbjct: 111 HSRWAMLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRW 170
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
D P S +E P + N + GYPGG +FD + + V +
Sbjct: 171 ADLIKPGSVDIEPKYP------HKVNPKPDAGYPGGLWFDFMMWGRGSPEPVMV------ 218
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEA 241
L+ EIK+ RLAM+A L F F+A
Sbjct: 219 --LRTKEIKNGRLAMLAFLGFCFQA 241
>gi|118487549|gb|ABK95601.1| unknown [Populus trichocarpa]
Length = 269
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 33/242 (13%)
Query: 6 SGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINP 65
+G+++ +SF+ G K L T+ + +V VAA P + W P P
Sbjct: 23 TGSLVGSTKASFLRG--KKLRLRTYTSPTAARSVTVCVAADPDRPLWFPGST------PP 74
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120
WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 75 PWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNT 134
Query: 121 -PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 135 PSWYSA----GEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFP------ 184
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +
Sbjct: 185 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 236
Query: 239 FE 240
F+
Sbjct: 237 FQ 238
>gi|255547714|ref|XP_002514914.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545965|gb|EEF47468.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 270
Score = 126 bits (317), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 126/247 (51%), Gaps = 34/247 (13%)
Query: 2 AAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKS-WIPAVKGGG 60
++ +G+ + +SF++G K + T+ V +S+ V A P + W P
Sbjct: 19 SSQINGSTVGATKASFLSG--KRLTVRKHTSPVVASRSVTVCAVADPDRPLWFPGST--- 73
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
P WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 74 ---PPPWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKI 130
Query: 121 ------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
W++A G + F+ +L +L+ +GW E +RW D P + + P
Sbjct: 131 GILNTPSWYDA----GKLEYFTDTTTLFIIELIFIGWAEGRRWADILKPGCVNTDPIFPN 186
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
+R + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A
Sbjct: 187 NRLTGT------DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 234 MLIFYFE 240
++ +F+
Sbjct: 233 VMGAWFQ 239
>gi|224072580|ref|XP_002303791.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222841223|gb|EEE78770.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 269
Score = 126 bits (317), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 121/242 (50%), Gaps = 33/242 (13%)
Query: 6 SGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINP 65
+G+++ +SF+ G K L T+ + +V VAA P + W P P
Sbjct: 23 TGSLVGSTKASFLRGEKLR--LRTYTSPTAARSVTVCVAADPDRPLWFPGST------PP 74
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120
WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 75 PWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNT 134
Query: 121 -PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 135 PSWYSA----GEVEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFP------ 184
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +
Sbjct: 185 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 236
Query: 239 FE 240
F+
Sbjct: 237 FQ 238
>gi|551047|emb|CAA55864.1| type II LHCI [Lolium temulentum]
Length = 253
Score = 126 bits (316), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 111/229 (48%), Gaps = 29/229 (12%)
Query: 19 NGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGF 78
NG ++ GT + + V A P + W P P WLDGSLPGD+GF
Sbjct: 18 NGLAGARTSFLGTGKAATRSSFTVRTAAPERPIWFPGST------PPPWLDGSLPGDFGF 71
Query: 79 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAI 132
DP GLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 72 DPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT 131
Query: 133 APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGG 192
+L +L+L+GW E +RW D P S + + P N + GYPGG
Sbjct: 132 ---DTTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFP------NNKLTGTDVGYPGG 182
Query: 193 KFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+FDPL G EKL L+ EIK+ RLAM+A++ +F+A
Sbjct: 183 LWFDPL--------GYGNGSPEKLKELRTKEIKNGRLAMLAVMGAWFQA 223
>gi|302756045|ref|XP_002961446.1| light-harvesting complex [Selaginella moellendorffii]
gi|302776390|ref|XP_002971365.1| light-harvesting complex [Selaginella moellendorffii]
gi|300161347|gb|EFJ27963.1| light-harvesting complex [Selaginella moellendorffii]
gi|300170105|gb|EFJ36706.1| light-harvesting complex [Selaginella moellendorffii]
Length = 250
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 106/193 (54%), Gaps = 31/193 (16%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P+ LDGSL GD+GFDPL LGKDP L+WY +AEL+H R+AMA + GI V +
Sbjct: 53 PQHLDGSLAGDFGFDPLELGKDPETLRWYVQAELVHSRFAMAGIAGILVTDLLRTVGGRD 112
Query: 121 --PWFEAGADPGAIAPFSFG---SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
W+EAGA F F +L QL+LMG+ E++R+ D+ +P SQ+ +
Sbjct: 113 LPVWYEAGA-----TEFEFADTRTLFVVQLILMGYAETRRYYDYISPGSQAAQ------D 161
Query: 176 TAENFANATG--EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
T F +A + GYPGG FFDP L I + LK E+K+ RLAMVA
Sbjct: 162 TFLGFEDALAGLQSGYPGGPFFDPAGLGRDINNA---------RTLKEKELKNGRLAMVA 212
Query: 234 MLIFYFEAGQGKT 246
+L + +A KT
Sbjct: 213 ILGVFVQAFFTKT 225
>gi|268612159|pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612177|pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
gi|268612195|pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 11 NGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDG 70
+G +F+ K + A +RV S+ +V A P + W P P WLDG
Sbjct: 27 SGTSKAFLGRKLKVNSSTASPSRVRSTS-TVCTVAEPDRPLWFPGS------TPPPWLDG 79
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFE 124
SLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + + W+
Sbjct: 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
AG +L +L+ +GW E +RW D NP + + P N
Sbjct: 140 AGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTG 190
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 191 TDVGYPGGLWFDPL--------GWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238
>gi|602359|emb|CAA57492.1| Type II chlorophyll a/b binding protein from photosystem I [Pisum
sativum]
Length = 269
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 11 NGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDG 70
+G +F+ K + A +RV S+ +V A P + W P P WLDG
Sbjct: 27 SGTSKAFLGRKLKVNSSTASPSRVRSTS-TVCTVAEPDRPLWFPGS------TPPPWLDG 79
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFE 124
SLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + + W+
Sbjct: 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
AG +L +L+ +GW E +RW D NP + + P N
Sbjct: 140 AGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTG 190
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 191 TDVGYPGGLWFDPL--------GWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238
>gi|358346569|ref|XP_003637339.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503274|gb|AES84477.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 268
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 115/235 (48%), Gaps = 30/235 (12%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
G +F+ K + +A RV S+ +V AA P + W P P WLDGS
Sbjct: 27 GTSKAFLGRKLKVNSNIAAPVRVRSTT-TVCAAAEPDRPLWFPGST------PPPWLDGS 79
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD+GFDPLGL DP LKW +AEL+H RWAM GIF+ + + I W+ A
Sbjct: 80 LPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA 139
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G +L +L+ +GW E +RW D NP + + P N
Sbjct: 140 GEQEYFT---DTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTGT 190
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 191 DVGYPGGLWFDPL--------GWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQ 237
>gi|388505428|gb|AFK40780.1| unknown [Medicago truncatula]
Length = 230
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 101/197 (51%), Gaps = 34/197 (17%)
Query: 34 VTSSKKSV--VVAALPPKKS-WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
+ ++KK V V LPP + W P PEWLDGSLPGD+GFDPLGLG DP L
Sbjct: 44 IRNAKKGVSDVCEPLPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPELL 97
Query: 91 KWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG-----ADPGAIAPFSFGS 139
KW +AEL+H RWAM V GI + + I W+ AG ADP +
Sbjct: 98 KWLAQAELMHARWAMLGVSGILIPEILEKIGYVKNFSWYNAGSVEYFADP--------TT 149
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L QL LMGWVE +RW D NP S +E P N N + GYPGG +FDP+
Sbjct: 150 LFIVQLALMGWVEGRRWADIVNPGSVDIEPKLP------NRPNPKPDVGYPGGLWFDPMQ 203
Query: 200 LAGTIKDGVYIPDTEKL 216
+ V + T++L
Sbjct: 204 WGRGSPEPVMVLRTKRL 220
>gi|384253051|gb|EIE26526.1| hypothetical protein COCSUDRAFT_52367 [Coccomyxa subellipsoidea
C-169]
Length = 246
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 92/229 (40%), Positives = 124/229 (54%), Gaps = 38/229 (16%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
S+ +S V + SW+P G+ I P +L G LPGD+GFDPL LG+DPA LKWY
Sbjct: 23 TVSAARSARVVVRAERASWLP-----GSEI-PSYLKGELPGDFGFDPLRLGEDPAALKWY 76
Query: 94 REAELIHGRWAMAAVVGIF---------VGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQ 144
++AEL +GRWAM A GI G + PWF+A +D AP S +L +
Sbjct: 77 QQAELQNGRWAMLAAAGILFVDLLGHLGAGGPAAATPWFKA-SDFTYFAPTS--TLFIVE 133
Query: 145 LLLMGWVESKRWVDFFNPESQSVE-WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGT 203
LLL WVE +R+ D P S + + + +S + N E GYPGG FDPL +
Sbjct: 134 LLLFAWVEVRRYQDMVKPGSTNQDPIFSQYSLPSGN------EPGYPGG-IFDPLGYS-- 184
Query: 204 IKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ LK+ EIK+ARLAM+A+L F+ +A GKTPL +L
Sbjct: 185 ---------KGNMAELKLKEIKNARLAMLAVLGFFVQAKTTGKTPLDSL 224
>gi|74272669|gb|ABA01130.1| chloroplast light harvesting complex I protein [Chlamydomonas
incerta]
Length = 241
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 79/193 (40%), Positives = 104/193 (53%), Gaps = 19/193 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV----GQAWSGI 120
P LDG+L GDYGFDPL LG++ L+WY +AEL+HGR+AM GI + + G
Sbjct: 40 PAHLDGTLAGDYGFDPLFLGQEKETLRWYVQAELVHGRFAMLGAAGIILTSIGAKVGLGF 99
Query: 121 P-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
P W++AG F +L+ Q LMGW E+KRW DF NP SQ+ ++ +
Sbjct: 100 PEWYDAGKVVVEKNNIDFPTLIVIQFYLMGWAETKRWYDFKNPGSQADGSFLGFTEEFKG 159
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
E GYPGG+FFDP+ L+ D K K E+K+ RLAM+A L F
Sbjct: 160 L-----ENGYPGGRFFDPMGLSRG--------DAAKYAEYKQKEVKNGRLAMIACLGFAA 206
Query: 240 E-AGQGKTPLGAL 251
+ A GK PL L
Sbjct: 207 QYAATGKGPLDNL 219
>gi|356519222|ref|XP_003528272.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Glycine max]
Length = 263
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 85/199 (42%), Positives = 111/199 (55%), Gaps = 27/199 (13%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P LDG+L GD+GFDPLGL +DPA L+WY +AEL+H R+AM V
Sbjct: 54 RPTWLPG------LDPPPHLDGTLAGDFGFDPLGLAEDPASLRWYVQAELVHCRFAMLGV 107
Query: 109 VGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
GI V S IP WFEAGA A + +L QL+LMG+VE+KR++DF +P
Sbjct: 108 FGILVTDLLRVTGISKIPVWFEAGAVKYDFA--NTKTLFLVQLVLMGFVETKRYMDFVSP 165
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
SQ+ E S + E GYPGG +PL LA I + K+
Sbjct: 166 GSQAKE----GSFFGLEASLKGLEPGYPGGPLLNPLGLAKDINNA---------HDWKLK 212
Query: 223 EIKHARLAMVAMLIFYFEA 241
EIK+ RLAMVAML + +A
Sbjct: 213 EIKNGRLAMVAMLGIFVQA 231
>gi|384247027|gb|EIE20515.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 255
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 109/203 (53%), Gaps = 30/203 (14%)
Query: 51 SWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG 110
+W+P K P +L+ LPG YGFDPL LG+DPA LKWY ++EL+H R+AMAAV G
Sbjct: 37 NWLPGSK------TPAYLE-DLPGSYGFDPLKLGEDPASLKWYVQSELVHSRFAMAAVAG 89
Query: 111 IFVGQAWS-----GIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
I + + +P W+EAG +P F +L+ ++ +VE KRW DF P S
Sbjct: 90 ILIPEVLKAFGAVNLPVWYEAGKYAQESSPIPFNTLIALEIFAFNFVEIKRWQDFKKPGS 149
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
Q E + E F TGE GYPGG FDPL L+ + +K+ EI
Sbjct: 150 QGEEGSF---VGLEGFFKGTGENGYPGG-VFDPLGLS----------KGPGYEAMKLREI 195
Query: 225 KHARLAMVAMLIF---YFEAGQG 244
K+ RLAM+A + F Y G+G
Sbjct: 196 KNGRLAMLAFIGFASQYLATGKG 218
>gi|145079153|tpg|DAA05901.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca6 [Acetabularia acetabulum]
Length = 201
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 85/197 (43%), Positives = 105/197 (53%), Gaps = 26/197 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-----G 119
P LDGSLP DYGFDPL LG DP L W R+AEL+H RWAM V GI V +
Sbjct: 9 PAHLDGSLPADYGFDPLSLGSDPDMLAWMRQAELMHCRWAMMGVAGILVPALLTKLGAMN 68
Query: 120 IP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ---SVEWATPWSR 175
+P WFEAG + F +LL + L MG+VE+KRW D +P SQ S+ T
Sbjct: 69 VPVWFEAGKVANDNSSVPFSALLMVEFLAMGFVETKRWYDIKSPGSQGDGSIFGIT---- 124
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
++F + GYPGG FFDP G E L+V EI + RLAMVAM+
Sbjct: 125 --DDFKGKS--VGYPGGTFFDPF--------GFSKGSEESYKTLQVKEIANGRLAMVAMV 172
Query: 236 IFYFE-AGQGKTPLGAL 251
F+ + A GK P+ L
Sbjct: 173 GFWAQYAATGKGPVDNL 189
>gi|225425420|ref|XP_002277906.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic [Vitis
vinifera]
gi|297738455|emb|CBI27656.3| unnamed protein product [Vitis vinifera]
Length = 271
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/247 (35%), Positives = 125/247 (50%), Gaps = 39/247 (15%)
Query: 6 SGAVLNGLGSSFINGG----KKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGN 61
+G+V+ +SF+ G KK A AGT T S AA P + W P
Sbjct: 23 TGSVVGATKASFLGGKRLSLKKFTAPAAGTRSFTVS----AAAADPNRPLWFPGST---- 74
Query: 62 LINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI- 120
P WLDGSLPGD+GFDPLGLG DP LKW ++E++H RWAM GIF+ + + I
Sbjct: 75 --PPPWLDGSLPGDFGFDPLGLGSDPETLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIG 132
Query: 121 -----PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
W+ A G + F+ +L +++ +GW E +RW D P + + P +
Sbjct: 133 ILNTPSWYTA----GELEYFTDKTTLFIVEMIFIGWAEGRRWADIIKPGCVNTDPIFPNN 188
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
+ + GYPGG +FDPL G PD K+ L+ EIK+ RLAM+A+
Sbjct: 189 KLTGT------DVGYPGGLWFDPLGW------GSGSPD--KIKELRTKEIKNGRLAMLAV 234
Query: 235 LIFYFEA 241
+ +F+A
Sbjct: 235 MGAWFQA 241
>gi|666054|emb|CAA59049.1| LHCI-680, photosystem I antenna protein [Hordeum vulgare subsp.
vulgare]
gi|326493584|dbj|BAJ85253.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 255
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 82/227 (36%), Positives = 109/227 (48%), Gaps = 29/227 (12%)
Query: 21 GKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDP 80
G ++ L A S V AA P + W P P WLDGSLPGD+GFDP
Sbjct: 22 GARTSFLGAAGKAAASRTSFAVRAAAPERPIWFPGST------PPPWLDGSLPGDFGFDP 75
Query: 81 LGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAP 134
GLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 76 WGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFT-- 133
Query: 135 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKF 194
+L +L+L+GW E +RW D P + + P N + GYPGG +
Sbjct: 134 -DTTTLFIVELILIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLW 186
Query: 195 FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
FDPL G EKL L+ EIK+ RLAM+A++ +F+A
Sbjct: 187 FDPL--------GYGTGSPEKLKELRTKEIKNGRLAMLAVMGAWFQA 225
>gi|224057740|ref|XP_002299309.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
gi|222846567|gb|EEE84114.1| light-harvesting complex I protein Lhca2 [Populus trichocarpa]
Length = 272
Score = 124 bits (311), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 120/242 (49%), Gaps = 33/242 (13%)
Query: 6 SGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINP 65
+G ++ +SF++G K L T + +V VAA P + W P P
Sbjct: 26 TGFLVGSTKASFLSG--KKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGST------PP 77
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120
WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 78 PWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNT 137
Query: 121 -PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 138 PSWYTA----GELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFP------ 187
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +
Sbjct: 188 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 239
Query: 239 FE 240
F+
Sbjct: 240 FQ 241
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P +K R E+ +GR AM AV+G + ++G F
Sbjct: 195 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 254
Query: 124 EAGADPGAIAPFS 136
ADPG FS
Sbjct: 255 AHLADPGHATVFS 267
>gi|118487538|gb|ABK95596.1| unknown [Populus trichocarpa]
Length = 269
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 120/242 (49%), Gaps = 33/242 (13%)
Query: 6 SGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINP 65
+G ++ +SF++G K L T + +V VAA P + W P P
Sbjct: 23 TGFLVGSTKASFLSG--KKLRLKKYTAPTAARSVTVCVAADPDRPLWFPGST------PP 74
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120
WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 75 PWLDGSLPGDFGFDPLGLGSDPETLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNT 134
Query: 121 -PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 135 PSWYTA----GELEYFTDTTTLFIVELFFIGWAEGRRWADILKPGCVNTDPIFP------ 184
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +
Sbjct: 185 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 236
Query: 239 FE 240
F+
Sbjct: 237 FQ 238
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P +K R E+ +GR AM AV+G + ++G F
Sbjct: 192 DVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251
Query: 124 EAGADPGAIAPFS 136
ADPG FS
Sbjct: 252 AHLADPGHATVFS 264
>gi|255538312|ref|XP_002510221.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223550922|gb|EEF52408.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 269
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 87/214 (40%), Positives = 116/214 (54%), Gaps = 29/214 (13%)
Query: 39 KSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
++VV A P +W+P L +P +LDG+L GDYGFDPLGLG+DP LKWY +AEL
Sbjct: 52 RAVVRAQQRP--TWLPG------LDSPPYLDGTLAGDYGFDPLGLGEDPESLKWYVQAEL 103
Query: 99 IHGRWAMAAVVGIFVGQAW--SGIP----WFEAGADPGAIAPFSFGSLLGTQLLLMGWVE 152
+H R+AM + GI +GI W+EAGA A S +LL QLL MG+ E
Sbjct: 104 VHARFAMLGIAGILFTDLLRVTGIRKLPVWYEAGAVKYEFA--STRTLLVVQLLWMGYAE 161
Query: 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPD 212
++R++D+ +P SQ+ E S A E GYPGG +P LA I+
Sbjct: 162 TRRYMDYVSPGSQNKE----GSFFGMEAALEGLEPGYPGGPLLNPFGLAKDIRSA----- 212
Query: 213 TEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKT 246
K+ EIK+ RLAMVAML + +A T
Sbjct: 213 ----RDWKLKEIKNGRLAMVAMLGIFVQAAVTHT 242
>gi|388495628|gb|AFK35880.1| unknown [Medicago truncatula]
Length = 268
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 114/235 (48%), Gaps = 30/235 (12%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
G +F K + +A RV S+ +V AA P + W P P WLDGS
Sbjct: 27 GTSKAFPGRKLKVNSNIAAPVRVRSTT-TVCAAAEPDRPLWFPGS------TPPPWLDGS 79
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD+GFDPLGL DP LKW +AEL+H RWAM GIF+ + + I W+ A
Sbjct: 80 LPGDFGFDPLGLSSDPESLKWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA 139
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G +L +L+ +GW E +RW D NP + + P N
Sbjct: 140 GEQEYFT---DTTTLFIVELIFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTGT 190
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 191 DVGYPGGLWFDPL--------GWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQ 237
>gi|449466336|ref|XP_004150882.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
gi|449522610|ref|XP_004168319.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Cucumis sativus]
Length = 259
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 86/215 (40%), Positives = 123/215 (57%), Gaps = 29/215 (13%)
Query: 35 TSSKKSVVVAALPP--KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
+ S++++++A +++W+P L P LDG+L GD+GFDPLGLG+DP LKW
Sbjct: 34 SPSRRTLLIAHAQSEHRQTWLPG------LDPPPHLDGTLAGDFGFDPLGLGEDPQSLKW 87
Query: 93 YREAELIHGRWAMAAVVGIFVGQAW-----SGIP-WFEAGADPGAIAPFSFGSLLGTQLL 146
Y +AEL+H R+AM V G+ + S +P W+ AGA A + +L QLL
Sbjct: 88 YVQAELVHCRFAMLGVSGVLLTDLLRVTGISELPVWYNAGAVEYGFA--NKRTLFIVQLL 145
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LMG+VE+KR++DF +P SQ+ E T + A A E GYPGG +PL +A IK+
Sbjct: 146 LMGFVETKRYMDFKSPGSQAQE-GTFFGLEA---AFKGLEPGYPGGPLLNPLGIAKDIKN 201
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
K+ EIK+ RLAMVAML + +A
Sbjct: 202 A---------HDWKLKEIKNGRLAMVAMLGIFVQA 227
>gi|398313941|emb|CCI55397.1| PSI antenna protein Lhca2 [Marchantia polymorpha]
Length = 267
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 102/183 (55%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PEWLDGSLPGD+GFDPLGLG +P LKW+ +AE++H RWAM GIF+ + + I
Sbjct: 71 PEWLDGSLPGDFGFDPLGLGSEPELLKWFVQAEIVHCRWAMLGAAGIFIPELLTKIGILN 130
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG + A + +L +LL MGW E +RW D P S + + P ++
Sbjct: 131 TPSWYTAG-EQTYFADQT--TLFIVELLFMGWAEGRRWADILKPGSVNTDPVFPNNKLTG 187
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
+ GYPGG +FDPL G K+ L+ EIK+ RLAM+A++ +
Sbjct: 188 T------DVGYPGGFWFDPL--------GWGAGGAAKVKELRTKEIKNGRLAMLAVMGAW 233
Query: 239 FEA 241
F+A
Sbjct: 234 FQA 236
>gi|115766|sp|P13869.1|CB12_PETHY RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCI type II CAB; Flags: Precursor
gi|169214|gb|AAA33711.1| chlorophyll binding protein precursor [Petunia x hybrida]
gi|226259|prf||1503272A chlorophyll binding protein
Length = 270
Score = 123 bits (309), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 122/245 (49%), Gaps = 30/245 (12%)
Query: 2 AAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGN 61
++ +G+++ +SF+ GGK+ + + S VAA P + W P
Sbjct: 19 SSQKNGSIVGATKASFL-GGKRLRVSKFIAPVGSRSVAVSAVAADPDRPLWFPGST---- 73
Query: 62 LINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI- 120
PEWLDGSLPGD+GFDPLGLG DP LKW +AEL+H RWAM GIF+ + + I
Sbjct: 74 --PPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIG 131
Query: 121 -----PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
W+ AG +L +L+L+GW E +RW D P + + P ++
Sbjct: 132 VLNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFPNNK 188
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ GYPGG +FDPL G K+ L+ EIK+ RLAM+A++
Sbjct: 189 LTGT------DVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVM 234
Query: 236 IFYFE 240
+F+
Sbjct: 235 GAWFQ 239
Score = 37.0 bits (84), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G PA +K R E+ +GR AM AV+G + ++G F
Sbjct: 193 DVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 252
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 253 AHLADPGHATIFA 265
>gi|164612849|gb|ABY63668.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 262
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 85/240 (35%), Positives = 118/240 (49%), Gaps = 36/240 (15%)
Query: 11 NGLGSSFINGGKKSQALLAGTNRVTSSKKS---VVVAALPPKKSWIPAVKGGGNLINPEW 67
NGL ++ G ++ L AG ++ + V AA P + W P + P W
Sbjct: 20 NGLAAA----GARTSFLGAGRTKLREAAARPSFAVSAAAPDRPIWFPGS------VPPPW 69
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------P 121
LDGSLPGD+GFDP GLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 70 LDGSLPGDFGFDPFGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILSTPS 129
Query: 122 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
W+ AG +L +L+L+GW E +RW D P + + P N
Sbjct: 130 WYTAGEQQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGCVNTDPIFP------NNK 180
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ GYPGG +FDPL G EKL L+ EIK+ RLAM+A++ +F+A
Sbjct: 181 LTGTDVGYPGGLWFDPL--------GWGSGSPEKLKELRTKEIKNGRLAMLAVMGAWFQA 232
>gi|356520198|ref|XP_003528751.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
Length = 270
Score = 123 bits (308), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 125/247 (50%), Gaps = 34/247 (13%)
Query: 2 AAATSGAVLNGLGSSFINGGK-KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
++ +G++L +SF++G K K + A +S+ +V A P + W P
Sbjct: 19 SSQKNGSLLGSTKASFLSGRKLKVNSFTAPVGARSST--TVCAVAEPDRPLWFPGST--- 73
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
P WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 74 ---PPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKI 130
Query: 121 ------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 131 GILNTPSWYTA----GELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPN 186
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
++ + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A
Sbjct: 187 NKLTGT------DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 234 MLIFYFE 240
++ +F+
Sbjct: 233 VMGAWFQ 239
>gi|449435085|ref|XP_004135326.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
gi|449529174|ref|XP_004171576.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Cucumis sativus]
Length = 271
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 84/237 (35%), Positives = 117/237 (49%), Gaps = 33/237 (13%)
Query: 13 LGSSFINGGKKSQALL--AGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDG 70
L S+F+ G K L A T V V AA P + W P P WLDG
Sbjct: 28 LASNFLTGKKLRLRNLNAAATAVVAPRTVPVCAAADPDRPLWFPGST------PPPWLDG 81
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFE 124
SLPGD+GFDPLGL DP L+W ++AEL+H RWAM GIF+ + + I W+
Sbjct: 82 SLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYT 141
Query: 125 AGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
A G + F+ +L +L+ +GW E +RW D P + + P ++
Sbjct: 142 A----GELEYFTDTTTLFIVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGT---- 193
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +F+
Sbjct: 194 --DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQ 240
>gi|358249066|ref|NP_001239987.1| uncharacterized protein LOC100794944 [Glycine max]
gi|255635762|gb|ACU18230.1| unknown [Glycine max]
Length = 267
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 83/241 (34%), Positives = 120/241 (49%), Gaps = 39/241 (16%)
Query: 11 NGLGSSFINGGK----KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPE 66
NG G F++G K K +A + G + T+ V A P + W P P
Sbjct: 24 NGSGGCFLSGRKLRVKKERAAIGGRSMGTT----VCAVAEPDRPLWFPGST------PPP 73
Query: 67 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------ 120
WLDG+LPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 74 WLDGTLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTP 133
Query: 121 PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
W+ A G + F+ +L +L +GW E +RW D P + + P ++
Sbjct: 134 SWYSA----GELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLTGT 189
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
+ GYPGG +FDPL G +K+ L+ EIK+ RLAM+A++ +F
Sbjct: 190 ------DVGYPGGLWFDPL--------GWGTGSPQKIKDLRTKEIKNGRLAMLAVMGAWF 235
Query: 240 E 240
+
Sbjct: 236 Q 236
>gi|168011208|ref|XP_001758295.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690330|gb|EDQ76697.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 120/245 (48%), Gaps = 32/245 (13%)
Query: 6 SGAVLNGLGS---SFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNL 62
+ V++ +GS SF+ G + G + + + + + W+P +
Sbjct: 19 TSKVVSNVGSARTSFLAGRALRTTQVCGAAKGDMTVSATLTGNKTDRPLWLPGSEA---- 74
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI-- 120
P+WLDGSLPGDYGFDPL L +P L W +AEL+H RWAM GIF+ + + I
Sbjct: 75 --PKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGI 132
Query: 121 ----PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
W++AG A G+L +LLLM W ES+RW D P S + + P
Sbjct: 133 LNTPSWYKAG---DATYFADQGTLFIVELLLMAWAESRRWADIARPGSVNTDPIFP---- 185
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
N + GYPGG +FDPL +D KL ++ E+K+ RLAM+A+L
Sbjct: 186 --NNKLTGTDVGYPGGLWFDPLGWGSGSED--------KLKEIRTKEVKNGRLAMLAVLG 235
Query: 237 FYFEA 241
+ +A
Sbjct: 236 AFVQA 240
>gi|356520200|ref|XP_003528752.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 84/243 (34%), Positives = 123/243 (50%), Gaps = 34/243 (13%)
Query: 6 SGAVLNGLGSSFINGGK-KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLIN 64
+G++L +SF++G K K + A +S+ +V A P + W P
Sbjct: 34 NGSLLGSTKASFLSGRKLKVNSFTAPVGARSST--TVCAVAEPDRPLWFPGST------P 85
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 86 PPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILN 145
Query: 121 --PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W+ A G + F+ +L +L +GW E +RW D P + + P ++
Sbjct: 146 TPSWYTA----GELEYFTDTTTLFVVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 201
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
+ GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++
Sbjct: 202 GT------DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGA 247
Query: 238 YFE 240
+F+
Sbjct: 248 WFQ 250
>gi|312283035|dbj|BAJ34383.1| unnamed protein product [Thellungiella halophila]
Length = 256
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 118/234 (50%), Gaps = 34/234 (14%)
Query: 16 SFINGGK---KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
SF+ G K K++A + +R + ++V AA P + W P PEWLDGSL
Sbjct: 17 SFLGGKKLRLKNKASVPAVSRSAALVRAV--AADPERPIWFPGST------PPEWLDGSL 68
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG 126
PGD+GFDPLGL DP LKW +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 69 PGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 128
Query: 127 ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+L +L+L+GW E +RW D P S + + P N +
Sbjct: 129 EQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFP------NNKLTGTD 179
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
GYPGG +FDPL G K+ L+ EIK+ RLAM+A++ +F+
Sbjct: 180 VGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQ 225
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ + W +K G +P + + L PG FDPLG
Sbjct: 134 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 193
Query: 84 GK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFS 136
G PA +K R E+ +GR AM AV+G + ++G F ADPG F+
Sbjct: 194 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 251
>gi|302848571|ref|XP_002955817.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
gi|300258785|gb|EFJ43018.1| hypothetical protein VOLCADRAFT_106964 [Volvox carteri f.
nagariensis]
Length = 257
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 108/207 (52%), Gaps = 29/207 (14%)
Query: 50 KSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVV 109
K W P V + P++L G L GDYG+DPLGLG DP L+WYR++EL+H RWAM V
Sbjct: 33 KLWAPGV------VAPDYLKGELAGDYGWDPLGLGADPVALRWYRQSELVHARWAMLGVA 86
Query: 110 GIFVGQAWS-GIPWFEAGADPGAIAPFS---FGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
G+ V + + ++EAG PF+ G LL + +LM WVE +RW D+ N S
Sbjct: 87 GVLVQEVVKPDVYFYEAGLPQNLPEPFTNVNMGGLLAWEFILMHWVEVRRWQDYKNFGSV 146
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ + ++ E GYPGG FDPL + L L+ EIK
Sbjct: 147 NEDPIFKGNKV------PNPEMGYPGG-IFDPLGFS-----------KGNLKELQTKEIK 188
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAMVA + F +A GK PL AL
Sbjct: 189 NGRLAMVAYMGFVLQAQATGKGPLAAL 215
>gi|212274977|ref|NP_001130616.1| uncharacterized protein LOC100191715 [Zea mays]
gi|195636368|gb|ACG37652.1| chlorophyll a-b binding protein [Zea mays]
gi|414590632|tpg|DAA41203.1| TPA: chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 19 NGGKKSQALLAGTNRVTSSKKS-----VVVAALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
NG + S + L G + ++ + V AA P + W P P WLDGSLP
Sbjct: 20 NGQRASSSFLGGKTLLRQAEAARPSFAVRAAADPNRPIWFPGST------PPPWLDGSLP 73
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP------WFEAGA 127
GD+GFDP GLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 74 GDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGE 133
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+L +L+L+GW E +RW D P S + + P ++ +
Sbjct: 134 QQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTGT------DV 184
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
GYPGG +FDPL EK+ L+ EIK+ RLAM+A++ +F+A
Sbjct: 185 GYPGGLWFDPLGWGSG--------SPEKIKELRTKEIKNGRLAMLAVMGAWFQA 230
>gi|159489490|ref|XP_001702730.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714513|dbj|BAD06920.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158280752|gb|EDP06509.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/208 (38%), Positives = 107/208 (51%), Gaps = 29/208 (13%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+K W P V + PE+L G L GDYG+DPLGLG DP LKWYR++EL H RWAM V
Sbjct: 32 RKLWAPGV------VAPEYLKGDLAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 85
Query: 109 VGIFVGQAWS-GIPWFEAGADPGAIAPFS---FGSLLGTQLLLMGWVESKRWVDFFNPES 164
G+ V + + ++EAG PF+ G LL + +LM WVE +RW D+ N S
Sbjct: 86 AGVLVQEIVKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGS 145
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ E GYPGG FDP + L L+ EI
Sbjct: 146 VNEDPIFKGNKV------PNPEMGYPGG-IFDPFGFS-----------KGNLKELQTKEI 187
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM+A + F +A GK PL AL
Sbjct: 188 KNGRLAMIAYMAFILQAQATGKGPLAAL 215
>gi|159476206|ref|XP_001696202.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714515|dbj|BAD06921.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158282427|gb|EDP08179.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 243
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/214 (42%), Positives = 117/214 (54%), Gaps = 29/214 (13%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R SS+KSVV ++SW+P + +L P +L G++GFDPLGLGKDP L+W
Sbjct: 13 RSASSRKSVVTCV--ARQSWLPGSQIPAHLDTPA--AQALAGNFGFDPLGLGKDPVALRW 68
Query: 93 YREAELIHGRWAMAAVVGIFV------GQAWSGIPWFEAG--ADPGAIAPFSFGSLLGTQ 144
Y++AELIH R AMA V GI + A + W++AG A + AP +GSLL Q
Sbjct: 69 YQQAELIHCRTAMAGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAP--WGSLLAVQ 126
Query: 145 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTA-ENFANATGEQGYPGGKFFDPLCLAGT 203
L L G+VE+KRW D P SQ P S E T E GYPGG FDPL L+
Sbjct: 127 LFLCGFVEAKRWQDIRKPGSQ----GEPGSFLGFEASLKGTSELGYPGGP-FDPLGLS-- 179
Query: 204 IKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
+ +K K+ E+K+ RLAM+A L F
Sbjct: 180 -------KEADKWADWKLKEVKNGRLAMLAFLGF 206
>gi|302808989|ref|XP_002986188.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146047|gb|EFJ12719.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 29/208 (13%)
Query: 40 SVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELI 99
SV AA + W P P WLDGSLP D+GFDPLGLG +P LKW+ ++E++
Sbjct: 54 SVTAAAATERPLWFPGST------PPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIV 107
Query: 100 HGRWAMAAVVGIFVGQAWSGIP------WFEAGADPGAIAPFSFGSLLGTQLLLMGWVES 153
H RWAM GIF+ +A + + W+ AG +L +++L+GW E
Sbjct: 108 HSRWAMLGAAGIFIPEALTKLGILNTPFWYTAGEQEYFT---DQTTLFIVEMILLGWAEG 164
Query: 154 KRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDT 213
+RW D P S + + P N + GYPGG +FDP G
Sbjct: 165 RRWADILKPGSVNTDPVFP------NNKLTGTDVGYPGGFWFDPF--------GWGTASP 210
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA 241
EKL L+ EIK+ RLAM+A++ +F+A
Sbjct: 211 EKLKELRTKEIKNGRLAMLAVMGAWFQA 238
>gi|168068456|ref|XP_001786080.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662173|gb|EDQ49108.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 278
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 80/218 (36%), Positives = 107/218 (49%), Gaps = 32/218 (14%)
Query: 40 SVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL------GKDPAFLKWY 93
S V A + W P + PEWLDGSLPGD+GFDPLGL G DP LKW+
Sbjct: 55 SAVAAPQNERPLWFPGSQA------PEWLDGSLPGDFGFDPLGLVLRTCAGSDPETLKWF 108
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI-----PWFEAGADPGAIAPFSFGSLLGTQLLLM 148
+AEL+H RWAM GIF+ +A + + P + D + +L +L+L
Sbjct: 109 VQAELVHCRWAMLGAAGIFIPEALTKMGILNTPSWTVAGDADYFTDKT--TLFVIELILF 166
Query: 149 GWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGV 208
W E +RW D NP +V+ P ++ + GYPGG +FDPL T
Sbjct: 167 AWAEGRRWADIVNPGCVNVDPVFPNNKLTGT------DVGYPGGLWFDPLGWGQT----- 215
Query: 209 YIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKT 246
D KL L+ EIK+ RLAM+A+L +A T
Sbjct: 216 --SDAAKLKDLRTREIKNGRLAMLAVLGAIVQANYTHT 251
Score = 38.1 bits (87), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 55/125 (44%), Gaps = 13/125 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ A + W V G ++P + + L PG FDPLG
Sbjct: 153 TDKTTLFVIELILFAWAEGRRWADIVNPGCVNVDPVFPNNKLTGTDVGYPGGLWFDPLGW 212
Query: 84 GK--DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFSF 137
G+ D A LK R E+ +GR AM AV+G V ++ DPG F+
Sbjct: 213 GQTSDAAKLKDLRTREIKNGRLAMLAVLGAIVQANYTHTGPIDNLVAHLVDPGHNTIFAL 272
Query: 138 GSLLG 142
+L+G
Sbjct: 273 SNLVG 277
>gi|302806497|ref|XP_002984998.1| light-harvesting complex [Selaginella moellendorffii]
gi|300147208|gb|EFJ13873.1| light-harvesting complex [Selaginella moellendorffii]
Length = 268
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 75/208 (36%), Positives = 105/208 (50%), Gaps = 29/208 (13%)
Query: 40 SVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELI 99
SV AA + W P P WLDGSLP D+GFDPLGLG +P LKW+ ++E++
Sbjct: 54 SVTAAAATERPLWFPGST------PPAWLDGSLPADFGFDPLGLGSEPELLKWFVQSEIV 107
Query: 100 HGRWAMAAVVGIFVGQAWSGIP------WFEAGADPGAIAPFSFGSLLGTQLLLMGWVES 153
H RWAM GIF+ +A + + W+ AG +L +++L+GW E
Sbjct: 108 HSRWAMLGAAGIFIPEALTKLGILNTPFWYTAGEQEYFT---DQTTLFIVEMILLGWAEG 164
Query: 154 KRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDT 213
+RW D P S + + P N + GYPGG +FDP G
Sbjct: 165 RRWADILKPGSVNTDPVFP------NNKLTGTDVGYPGGFWFDPF--------GWGTASP 210
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA 241
EKL L+ EIK+ RLAM+A++ +F+A
Sbjct: 211 EKLKELRTKEIKNGRLAMLAVMGAWFQA 238
>gi|87313173|gb|ABD37883.1| light-harvesting chlorophyll-a/b binding protein Lhca5.1
[Mesostigma viride]
Length = 195
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/209 (41%), Positives = 111/209 (53%), Gaps = 28/209 (13%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAA-LPPKKS----WIPA 55
+A T+ LN S+FI G +A +A + R + K+SVV A P+ S W P
Sbjct: 3 LACMTTSVALNA--STFIRGAGPVRAPVAKSGRNAAPKRSVVRAGGAAPEPSERPLWYPG 60
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI---- 111
K PEWL+GSLPGDYGFDP+G G P+ L+W AEL+H RWAM V G+
Sbjct: 61 TKA------PEWLNGSLPGDYGFDPVGFGSSPSSLRWMVHAELVHARWAMLGVAGVLGQE 114
Query: 112 FVGQAWSGIP-WFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
V IP W+EA G ++ F+ +L+ +LMG+VE+KR+ D NP SQ
Sbjct: 115 LVHVTNGSIPHWYEA----GKVSYFADTPTLIVVMHILMGFVETKRYFDIVNPGSQ---- 166
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPL 198
A P AE T GYPGG FDPL
Sbjct: 167 AQPGFAGAERLMLGT-SPGYPGGILFDPL 194
>gi|145079172|tpg|DAA05902.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca7 [Acetabularia acetabulum]
Length = 214
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/227 (36%), Positives = 116/227 (51%), Gaps = 35/227 (15%)
Query: 24 SQALLAGTNRVT---SSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDP 80
S L T+RVT S+++ V + W+P V P+ L+ +LP DYGFDP
Sbjct: 2 SACFLGQTSRVTPTNSTRRMSPVTQATEQPVWLPGVN------VPQHLNRNLPADYGFDP 55
Query: 81 LGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAP 134
LGLG +P LKWY +AEL+H R+AM V GI + + + W+EAG P
Sbjct: 56 LGLGSEPEALKWYVQAELVHCRFAMLGVAGILIPGLLTKVGILNVPQWYEAGKVAIESQP 115
Query: 135 F--SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT--AENFA-NATGEQGY 189
F +F +LLG QL +M W E+KRWV+F NP SQS + P + + FA +G+ Y
Sbjct: 116 FGLNFQTLLGFQLFMMTWAETKRWVEFKNPGSQSNPDSYPGAEMLPGKVFALGGSGDPNY 175
Query: 190 PGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
PGG F+P+ + D +KV EI + R A + I
Sbjct: 176 PGG-LFNPMGMGD--------------DSMKVKEIANGRTACLRFRI 207
>gi|2306981|gb|AAB65793.1| photosystem I antenna protein [Oryza sativa Indica Group]
Length = 265
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 84/240 (35%), Positives = 120/240 (50%), Gaps = 31/240 (12%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVV-AALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
SSF+ G +S LL +S++ S V AA P + W P P WLDGSLP
Sbjct: 24 SSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFPGST------PPPWLDGSLP 77
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGA 127
GD+GFDPLGLG DP L+W +A+L+H RWAM GIF+ + + I W+ AG
Sbjct: 78 GDFGFDPLGLGSDPESLRWNVQADLVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 137
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVD-FFNPESQSVEWATPWSRTAENFANATGE 186
+L +L+L+GW E +RW D NP + + P + +
Sbjct: 138 HQYFT---DTTTLFIIELILIGWAEGRRWADIIINPGCVNTDPIFPQQQVHGH------R 188
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKT 246
+G P G + DPL GT+ EK+ L+ EIK+ R+AM+A++ +F+A T
Sbjct: 189 RGEPCGLWLDPLGW-GTVS-------PEKIKELRTKEIKNGRVAMLAVMGAWFQAEHTGT 240
>gi|311994|emb|CAA50763.1| light harvesting complex I chlorophyll binding protein [Pyrobotrys
stellata]
Length = 260
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 113/239 (47%), Gaps = 38/239 (15%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R + + VVA + SW P GN PE+L G L GDYGFDPLG G +P L+W
Sbjct: 14 RAPAQARRSVVARAEQRASWFP-----GNPA-PEYLKGELAGDYGFDPLGFGDEPRRLEW 67
Query: 93 YREAELIHGRWAMAAVVGIFVGQ------AWSGIP------WFEAGADPGAIAPFSFGSL 140
+AEL+H RWAM GI + + S P W+EAG P+S GSL
Sbjct: 68 MVQAELVHCRWAMLGAAGILLPEIGNKTGMQSAAPGLAFPHWWEAGKVVAESGPWSMGSL 127
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPW------SRTAENFANATGEQGYPGGKF 194
T LLMGW E KR DF P SQ+V WA W S T E GYPGG
Sbjct: 128 TFTMFLLMGWAEHKRLYDFVKPGSQAVGWA--WAPLGLGSITGVEEPLVAKENGYPGG-I 184
Query: 195 FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE--AGQGKTPLGAL 251
FDP ++ + K K +E+ + RLAM AM F + A GK P+ L
Sbjct: 185 FDPFQMS---------KNEAKYKWYKQSEVTNGRLAMTAMFGFVSQHIAYPGKGPIDNL 234
>gi|388515647|gb|AFK45885.1| unknown [Lotus japonicus]
Length = 269
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 104/210 (49%), Gaps = 29/210 (13%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
S +V AA P + W P P WLDGSLPGD+GFDPLGL DP L+W +A
Sbjct: 52 STTTVCAAAEPDRPLWFPGS------TPPPWLDGSLPGDFGFDPLGLSSDPESLRWNVQA 105
Query: 97 ELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGW 150
EL+H RWAM GIF+ + + I W+ AG +L +L+ +GW
Sbjct: 106 ELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELIFIGW 162
Query: 151 VESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYI 210
E +RW D P S + + P N + GYPGG +FDPL G
Sbjct: 163 AEGRRWADILKPGSVNTDPIFP------NNKLTGTDVGYPGGLWFDPL--------GWGS 208
Query: 211 PDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+KL L+ EIK+ RLAM+A++ +F+
Sbjct: 209 GSPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238
Score = 36.6 bits (83), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G F
Sbjct: 192 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 252 AHLADPGHATVFA 264
>gi|20792|emb|CAA41406.1| Type II chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 278
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 72/184 (39%), Positives = 100/184 (54%), Gaps = 25/184 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLPGD+GFDPLGLG DP LKW +AEL+H RWAM GIF+ + + +
Sbjct: 83 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELCTKLGILN 142
Query: 121 --PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W+ A G + F+ +L +++ +GW E +RW D P S + + P
Sbjct: 143 TPSWYTA----GELEYFTDKTTLFVVEMIFLGWAEGRRWADILEPGSVNTDPIFP----- 193
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++
Sbjct: 194 -NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGA 244
Query: 238 YFEA 241
+F+A
Sbjct: 245 WFQA 248
>gi|116779436|gb|ABK21281.1| unknown [Picea sitchensis]
gi|116780920|gb|ABK21880.1| unknown [Picea sitchensis]
gi|116785937|gb|ABK23915.1| unknown [Picea sitchensis]
gi|116792210|gb|ABK26276.1| unknown [Picea sitchensis]
gi|224284045|gb|ACN39760.1| unknown [Picea sitchensis]
gi|224285097|gb|ACN40276.1| unknown [Picea sitchensis]
Length = 288
Score = 120 bits (301), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 114/248 (45%), Gaps = 89/248 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W+P K PEWLDGSL GDYGFDPLGLGK +L++
Sbjct: 69 WLPGAKA------PEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLG 122
Query: 93 -----------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP 129
+RE ELIHGRWAM V+G + ++GI W +AG
Sbjct: 123 DFVGDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVE 182
Query: 130 --------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
G PF+ +L+ ++LL+G++E +R + +PE++
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL--------------- 226
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGGK+FDP LA D K DRLK+AEIKHARLAMVA LIF +A
Sbjct: 227 -------YPGGKYFDPFGLA---------VDEIKKDRLKLAEIKHARLAMVAFLIFAIQA 270
Query: 242 G-QGKTPL 248
K PL
Sbjct: 271 AVTSKGPL 278
>gi|297817464|ref|XP_002876615.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
gi|297322453|gb|EFH52874.1| Lhca2 protein [Arabidopsis lyrata subsp. lyrata]
Length = 257
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/204 (38%), Positives = 102/204 (50%), Gaps = 29/204 (14%)
Query: 43 VAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 102
VAA P + W P PEWLDGSLPGD+GFDPLGL DP LKW +AEL+H R
Sbjct: 46 VAADPDRPIWFPGST------PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAELVHCR 99
Query: 103 WAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
WAM GIF+ + + I W+ AG +L +L+L+GW E +RW
Sbjct: 100 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRW 156
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
D P S + + P N + GYPGG +FDPL KL
Sbjct: 157 ADIIKPGSVNTDPVFP------NNKLTGTDVGYPGGLWFDPLGWGSG--------SPAKL 202
Query: 217 DRLKVAEIKHARLAMVAMLIFYFE 240
L+ EIK+ RLAM+A++ +F+
Sbjct: 203 KELRTKEIKNGRLAMLAVMGAWFQ 226
Score = 37.7 bits (86), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ + W +K G +P + + L PG FDPLG
Sbjct: 135 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 84 GK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFS 136
G PA LK R E+ +GR AM AV+G + ++G F ADPG F+
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|356559462|ref|XP_003548018.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 1 [Glycine max]
gi|255645717|gb|ACU23352.1| unknown [Glycine max]
Length = 270
Score = 120 bits (300), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 123/247 (49%), Gaps = 34/247 (13%)
Query: 2 AAATSGAVLNGLGSSFINGGK-KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
++ +G++L +SF++G K K A +S+ +V A P + W P
Sbjct: 19 SSQKNGSLLGSTKASFLSGRKLKVNNFTAPVGARSST--TVCAVAEPDRPLWFPGST--- 73
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
P WLDGSLPGD+GFDPLGL DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 74 ---PPPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKI 130
Query: 121 ------PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
W+ A G + F+ +L +L +GW E +RW D P + + P
Sbjct: 131 GILNTPSWYTA----GELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPN 186
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
++ + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A
Sbjct: 187 NKLTGT------DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLA 232
Query: 234 MLIFYFE 240
++ +F+
Sbjct: 233 VMGAWFQ 239
>gi|168060921|ref|XP_001782441.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666112|gb|EDQ52776.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 238
Score = 119 bits (299), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 98/183 (53%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P+WLDGSLPGDYGFDPL L +P L W +AEL+H RWAM GIF+ + + I
Sbjct: 24 PKWLDGSLPGDYGFDPLDLAAEPGRLNWMVQAELVHCRWAMLGAAGIFIPELLTKIGILN 83
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W++AG A G+L +LLLM W ES+RW D P S + + P
Sbjct: 84 TPSWYKAG---DATYFADQGTLFIVELLLMAWAESRRWADIARPGSVNTDPIFP------ 134
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL +D KL ++ E+K+ RLAM+A+L +
Sbjct: 135 NNKLTGTDVGYPGGLWFDPLGWGSGSED--------KLKEIRTKEVKNGRLAMLAVLGAF 186
Query: 239 FEA 241
+A
Sbjct: 187 VQA 189
>gi|87313217|gb|ABD37905.1| light-harvesting chlorophyll-a/b binding protein Lhca3
[Chlamydomonas incerta]
Length = 245
Score = 119 bits (299), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 82/209 (39%), Positives = 109/209 (52%), Gaps = 31/209 (14%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+K W P V + PE+L G L GDYG+DPLGLG DP LKWYR++EL H RWAM V
Sbjct: 20 RKLWAPGV------VAPEYLKGELAGDYGWDPLGLGADPTALKWYRQSELQHARWAMLGV 73
Query: 109 VGIFVGQ-AWSGIPWFEAGADPGAIAPFS---FGSLLGTQLLLMGWVESKRWVDFFNPES 164
G+ V + + ++EAG PF+ G LL + +LM WVE +RW D+ N S
Sbjct: 74 AGVLVQEIVKPDVYFYEAGLPQNLPEPFTNINMGGLLAWEFILMHWVEVRRWQDYKNFGS 133
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA-GTIKDGVYIPDTEKLDRLKVAE 223
+ + ++ E GYPGG FDP + G K+ L+ E
Sbjct: 134 VNEDPIFKGNKV------PNPEMGYPGG-IFDPFGFSKGDFKE------------LQTKE 174
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM+A + F +A GK PL AL
Sbjct: 175 IKNGRLAMIAYMAFILQAQATGKGPLAAL 203
>gi|6850838|emb|CAB71077.1| Lhca2 protein [Arabidopsis thaliana]
Length = 257
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/214 (37%), Positives = 106/214 (49%), Gaps = 30/214 (14%)
Query: 34 VTSSKKSV-VVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
V+ SV VAA P + W P PEWLDGSLPGD+GFDPLGL DP LKW
Sbjct: 36 VSRQDASVRAVAADPDRPIWFPGST------PPEWLDGSLPGDFGFDPLGLSSDPDSLKW 89
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
+AE++H RWAM GIF+ + + I W+ AG +L +L+
Sbjct: 90 NVQAEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---DKTTLFVVELI 146
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L+GW E +RW D P S + + P N + GYPGG +FDPL
Sbjct: 147 LIGWAEGRRWADIIKPGSVNTDPVFP------NNKLTGTDVGYPGGLWFDPLGWGSG--- 197
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
KL L+ EIK+ RLAM+A++ +F+
Sbjct: 198 -----SPAKLKELRTKEIKNGRLAMLAVMGAWFQ 226
Score = 37.7 bits (86), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ + W +K G +P + + L PG FDPLG
Sbjct: 135 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 84 GK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFS 136
G PA LK R E+ +GR AM AV+G + ++G F ADPG F+
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|357122261|ref|XP_003562834.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
[Brachypodium distachyon]
Length = 258
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 103/206 (50%), Gaps = 29/206 (14%)
Query: 42 VVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHG 101
V AA P + W P P WLDGSLPGD+GFDP GLG DP L+W +AEL+H
Sbjct: 46 VRAAAPERPIWFPGST------PPPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHC 99
Query: 102 RWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 155
RWAM GIF+ + + I W+ AG +L +L+L+GW E +R
Sbjct: 100 RWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQTYFA---DTTTLFIVELILIGWAEGRR 156
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W D P + + P N + GYPGG +FDPL G EK
Sbjct: 157 WADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPL--------GYGSGSPEK 202
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
+ L+ EIK+ RLAM+A++ +F+A
Sbjct: 203 IKELRTKEIKNGRLAMLAVMGAWFQA 228
>gi|186511289|ref|NP_191706.2| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
gi|4741940|gb|AAD28767.1|AF134120_1 Lhca2 protein [Arabidopsis thaliana]
gi|15451180|gb|AAK96861.1| Lhca2 protein [Arabidopsis thaliana]
gi|17529286|gb|AAL38870.1| putative Lhca2 protein [Arabidopsis thaliana]
gi|18377464|gb|AAL66898.1| Lhca2 protein [Arabidopsis thaliana]
gi|25083456|gb|AAN72081.1| Lhca2 protein [Arabidopsis thaliana]
gi|332646688|gb|AEE80209.1| photosystem I light harvesting complex protein [Arabidopsis
thaliana]
Length = 257
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/204 (37%), Positives = 102/204 (50%), Gaps = 29/204 (14%)
Query: 43 VAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 102
VAA P + W P PEWLDGSLPGD+GFDPLGL DP LKW +AE++H R
Sbjct: 46 VAADPDRPIWFPGST------PPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCR 99
Query: 103 WAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
WAM GIF+ + + I W+ AG +L +L+L+GW E +RW
Sbjct: 100 WAMLGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRW 156
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
D P S + + P N + GYPGG +FDPL KL
Sbjct: 157 ADIIKPGSVNTDPVFP------NNKLTGTDVGYPGGLWFDPLGWGSG--------SPAKL 202
Query: 217 DRLKVAEIKHARLAMVAMLIFYFE 240
L+ EIK+ RLAM+A++ +F+
Sbjct: 203 KELRTKEIKNGRLAMLAVMGAWFQ 226
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ + W +K G +P + + L PG FDPLG
Sbjct: 135 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVFPNNKLTGTDVGYPGGLWFDPLGW 194
Query: 84 GK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFS 136
G PA LK R E+ +GR AM AV+G + ++G F ADPG F+
Sbjct: 195 GSGSPAKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 252
>gi|356559464|ref|XP_003548019.1| PREDICTED: chlorophyll a-b binding protein 7, chloroplastic-like
isoform 2 [Glycine max]
Length = 281
Score = 119 bits (298), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 6 SGAVLNGLGSSFINGGK-KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLIN 64
+G++L +SF++G K K A +S+ +V A P + W P
Sbjct: 34 NGSLLGSTKASFLSGRKLKVNNFTAPVGARSST--TVCAVAEPDRPLWFPGST------P 85
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLPGD+GFDPLGL DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 86 PPWLDGSLPGDFGFDPLGLASDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILN 145
Query: 121 --PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W+ A G + F+ +L +L +GW E +RW D P + + P ++
Sbjct: 146 TPSWYTA----GELEYFTDTTTLFIVELFFIGWAEGRRWADIIKPGCVNTDPIFPNNKLT 201
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
+ GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++
Sbjct: 202 GT------DVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGA 247
Query: 238 YFE 240
+F+
Sbjct: 248 WFQ 250
>gi|116792229|gb|ABK26282.1| unknown [Picea sitchensis]
Length = 288
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 116/248 (46%), Gaps = 89/248 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W+P K PEWLDGSL GDYGFDPLGLGK +L++
Sbjct: 69 WLPGAKA------PEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLG 122
Query: 93 -----------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP 129
+RE ELIHGRWAM V+G + ++GI W +AG
Sbjct: 123 DFVGDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVE 182
Query: 130 --------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
G PF+ +L+ ++LL+G++E +R + +PE++
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL--------------- 226
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGGK+FDP LA + + +K DRLK+AEIKHARLAMVA LIF +A
Sbjct: 227 -------YPGGKYFDPFGLA--------VEEIKK-DRLKLAEIKHARLAMVAFLIFAIQA 270
Query: 242 G-QGKTPL 248
K PL
Sbjct: 271 AVTSKGPL 278
>gi|116790890|gb|ABK25779.1| unknown [Picea sitchensis]
Length = 288
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 113/248 (45%), Gaps = 89/248 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W+P K PEWLDGSL GDYGFDPLGLGK +L++
Sbjct: 69 WLPGAKA------PEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLG 122
Query: 93 -----------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP 129
+RE ELIHGRWAM V+G + ++GI W +AG
Sbjct: 123 DFVGDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVE 182
Query: 130 --------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
G PF+ +L+ ++LL+G++E +R + +PE++
Sbjct: 183 LVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAE-VDPETRL--------------- 226
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGGK+FDP LA D K DRL +AEIKHARLAMVA LIF +A
Sbjct: 227 -------YPGGKYFDPFGLA---------VDEIKKDRLNLAEIKHARLAMVAFLIFAIQA 270
Query: 242 G-QGKTPL 248
K PL
Sbjct: 271 AVTSKGPL 278
>gi|87313219|gb|ABD37906.1| light-harvesting chlorophyll-a/b binding protein Lhca4
[Chlamydomonas incerta]
Length = 237
Score = 118 bits (295), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/214 (41%), Positives = 115/214 (53%), Gaps = 29/214 (13%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R SS+KSVV ++SW+P + +L P +L G++GFDPLGLGKDP L W
Sbjct: 7 RSASSRKSVVTCV--ARQSWLPGSQIPAHLDTPS--AQALAGNFGFDPLGLGKDPVALAW 62
Query: 93 YREAELIHGRWAMAAVVGIFV------GQAWSGIPWFEAG--ADPGAIAPFSFGSLLGTQ 144
Y++AELIH R AM V GI + A + W++AG A + AP +G+LL Q
Sbjct: 63 YQQAELIHCRTAMTGVAGILIPGLLTKAGALNVPEWYDAGKVAIENSFAP--WGTLLAVQ 120
Query: 145 LLLMGWVESKRWVDFFNPESQSVEWATPWSRTA-ENFANATGEQGYPGGKFFDPLCLAGT 203
L L G+VE KRW D P SQ P S E+ T E GYPGG FDPL L+
Sbjct: 121 LFLCGFVEVKRWQDIRKPGSQ----GEPGSFLGFESSLKGTSEVGYPGGP-FDPLGLS-- 173
Query: 204 IKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
+ +K K+ E+K+ RLAM+A L F
Sbjct: 174 -------KEADKWADWKLKEVKNGRLAMLAFLGF 200
>gi|307103837|gb|EFN52094.1| hypothetical protein CHLNCDRAFT_32710 [Chlorella variabilis]
Length = 264
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 119/235 (50%), Gaps = 34/235 (14%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
++ + T+R ++ +VVV A + W P V +P++LDG+L GDYGFDP+GL
Sbjct: 13 TRVVAKSTSRSSARAGNVVVRA--ERSLWAPGVA------SPKYLDGNLAGDYGFDPMGL 64
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPF-----SFG 138
G +P L WYR+AEL + RWAM V GI + + W+ + P + F + G
Sbjct: 65 GANPERLTWYRQAELQNARWAMLGVAGILGQEIINPEQWWYSAGMPENLPSFDGNKVNMG 124
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
+L + LLM +VE +RW D +S + + P N E GYPGG FDPL
Sbjct: 125 GILAWEFLLMHFVEVRRWQDIRKKDSVNADPFNP------NLKVPNPEMGYPGGP-FDPL 177
Query: 199 CLA-GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ G K+ ++ EIK+ RLAMVA + F +A GK PL L
Sbjct: 178 GFSKGNFKE------------VQTKEIKNGRLAMVAFVAFTIQAQATGKGPLANL 220
>gi|147841900|emb|CAN72005.1| hypothetical protein VITISV_033663 [Vitis vinifera]
Length = 272
Score = 117 bits (293), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 79/220 (35%), Positives = 109/220 (49%), Gaps = 35/220 (15%)
Query: 29 AGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPA 88
AGT T S AA P + W P P WLDGSLPGD+GFDPLGLG DP
Sbjct: 51 AGTRSFTVS----AAAADPNRPLWFPGST------PPPWLDGSLPGDFGFDPLGLGSDPE 100
Query: 89 FLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFS-FGSLL 141
LKW ++E++H RWAM GIF+ + + I W+ A G + F+ +L
Sbjct: 101 TLKWMVQSEIVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTA----GELEYFTDKTTLF 156
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
+++ +GW E +RW D P + + P N + GYPGG +FDPL
Sbjct: 157 IVEMIFIGWAEGRRWADIIKPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPLGWG 210
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D K+ L+ EIK+ RLAM+A++ +F+A
Sbjct: 211 SGSPD--------KIKELRTKEIKNGRLAMLAVMGAWFQA 242
>gi|145079846|tpg|DAA05942.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Micromonas sp. CCMP490]
Length = 250
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 70/177 (39%), Positives = 95/177 (53%), Gaps = 22/177 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P+ LDG++PGDYGFDPLGLG+D L+WY++AEL H RWAM V G+ + P+ E
Sbjct: 52 PKHLDGTMPGDYGFDPLGLGEDKVALEWYKQAELQHARWAMLGVTGMAAPELIQN-PFVE 110
Query: 125 AGADPGAIAPF------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
A AP S +L Q+ +M W E +RW D NP + + + T
Sbjct: 111 GAMPNWAEAPLWDGYMASPNTLFVVQMFMMNWAEVRRWQDMKNPGTMNED-----PLTGA 165
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
N + + GYP G FDP+ +A D EK+ LKV EI + RLAMVA++
Sbjct: 166 NKGDTNTDVGYPKG-LFDPMGMAK---------DPEKVKVLKVKEIANGRLAMVAVM 212
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
FDP+G+ KDP +K + E+ +GR AM AV+G + +G+
Sbjct: 181 FDPMGMAKDPEKVKVLKVKEIANGRLAMVAVMGCIIQNEATGV 223
>gi|149242541|pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PEWLDGSLPGD+GFDPLGL DP L+W +AEL+H RWAM GIF+ + + +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +L+ +GW E +RW D NP + + P
Sbjct: 61 TPSWYTAGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------ 111
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL +KL L+ EIK+ RLAM+A++ +
Sbjct: 112 NNKLTGTDVGYPGGLWFDPLGWGSA--------SPQKLKELRTKEIKNGRLAMLAVMGAW 163
Query: 239 FE 240
F+
Sbjct: 164 FQ 165
>gi|125605837|gb|EAZ44873.1| hypothetical protein OsJ_29513 [Oryza sativa Japonica Group]
Length = 241
Score = 117 bits (292), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 81/138 (58%), Gaps = 15/138 (10%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA---W---S 118
P WLDGSLPGD+GFDPLGLG DP L+W+ +AEL+H RWAM AV GI V + W
Sbjct: 34 PPWLDGSLPGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVLEKWGFME 93
Query: 119 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W +AGA P+ +L +Q+ LMGW E +RW D+ NP +VE P
Sbjct: 94 DYSWIDAGARDYFADPW---TLFVSQMALMGWAEGRRWADYLNPGCVAVEPRLP------ 144
Query: 179 NFANATGEQGYPGGKFFD 196
N N + GYPGG +FD
Sbjct: 145 NRRNPVPDVGYPGGLWFD 162
>gi|87313165|gb|ABD37879.1| light-harvesting chlorophyll-a/b binding protein Lhca2 [Mesostigma
viride]
Length = 242
Score = 116 bits (290), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 117/237 (49%), Gaps = 45/237 (18%)
Query: 28 LAGTNRVTSSKKSV--VVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
+A R T +K VV+A + W P GN WLDGSLPGD+G+DPLGL
Sbjct: 16 VASVARATPAKAQAKFVVSASSNRPVWFP-----GNAPR-AWLDGSLPGDFGYDPLGLSS 69
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIF-------VGQAWSGIPWFEAGADPGAIAPFSFG 138
DP LKW +AEL + RWAM V G+ VG + + W+EA P +
Sbjct: 70 DPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLP-AAVQWYEA---PLVDYQADWK 125
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN---ATGEQGYPGGKFF 195
+LL QL+L WVE +RW DF +P S + A+ F N +T GYPGG F
Sbjct: 126 TLLVVQLVLHAWVEGRRWADFHSPGSAN----------ADPFGNSLPSTATTGYPGGP-F 174
Query: 196 DPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML-IFYFEAGQGKTPLGAL 251
DPL + L LK+ EIK+ RLAMVA L +F + G +PL L
Sbjct: 175 DPLGFS-----------KGNLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNL 220
>gi|255070815|ref|XP_002507489.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522764|gb|ACO68747.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 249
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/214 (35%), Positives = 110/214 (51%), Gaps = 30/214 (14%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
S++ SV A + ++ P P+ LDG++PGDYGFDPLGLG+D A L WY
Sbjct: 26 CRSARSSVRTVAAAVRPNYFPGS------TPPKHLDGTMPGDYGFDPLGLGEDKAALAWY 79
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFG------SLLGTQLLL 147
++AEL+H RWAM V G+ + + G P + A APF G +L Q+ L
Sbjct: 80 QQAELMHARWAMLGVAGMAAPEIF-GNPLVDGPLPNWADAPFYDGYIADANTLFVVQMFL 138
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG-EQGYPGGKFFDPLCLAGTIKD 206
M W E +RW D NP S A P+ + + TG + GYPGG F+P+ +A +
Sbjct: 139 MNWAEVRRWQDMKNPGSVH---ADPYDESRK----CTGTDVGYPGGGLFNPMGMAKS--- 188
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
E+ L+ EI + RLAMVA + + +
Sbjct: 189 ------AEEEKTLRTKEIANGRLAMVAAMGCFIQ 216
>gi|226504520|ref|NP_001147224.1| chlorophyll a-b binding protein [Zea mays]
gi|195608716|gb|ACG26188.1| chlorophyll a-b binding protein [Zea mays]
Length = 256
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PEWLDGSLPGD+GFDPLGL DP LKW +AE++H RWAM GIF+ + + I
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPESLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILN 120
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +L+L+GW E +RW D P S + + P
Sbjct: 121 TPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFP------ 171
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL K+ L+ EIK+ RLAM+A++ +
Sbjct: 172 NNKLTGTDVGYPGGLWFDPLGWGSG--------SPAKIKELRTKEIKNGRLAMLAVMGAW 223
Query: 239 FE 240
F+
Sbjct: 224 FQ 225
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 12/118 (10%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL-------PGDYGFDPLGL 83
T++ T +++ + W +K G +P + + L PG FDPLG
Sbjct: 134 TDKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGW 193
Query: 84 GK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWFEAGADPGAIAPFS 136
G PA +K R E+ +GR AM AV+G + ++G F ADPG F+
Sbjct: 194 GSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFA 251
>gi|116779438|gb|ABK21282.1| unknown [Picea sitchensis]
gi|116782291|gb|ABK22450.1| unknown [Picea sitchensis]
gi|116784092|gb|ABK23211.1| unknown [Picea sitchensis]
gi|116786476|gb|ABK24121.1| unknown [Picea sitchensis]
gi|116791795|gb|ABK26112.1| unknown [Picea sitchensis]
gi|116791985|gb|ABK26188.1| unknown [Picea sitchensis]
gi|116792462|gb|ABK26376.1| unknown [Picea sitchensis]
gi|148908663|gb|ABR17439.1| unknown [Picea sitchensis]
gi|224284338|gb|ACN39904.1| unknown [Picea sitchensis]
gi|224284452|gb|ACN39960.1| unknown [Picea sitchensis]
gi|224284659|gb|ACN40062.1| unknown [Picea sitchensis]
gi|224284741|gb|ACN40101.1| unknown [Picea sitchensis]
gi|224285484|gb|ACN40463.1| unknown [Picea sitchensis]
Length = 278
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 69/183 (37%), Positives = 96/183 (52%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLP D+GFDPLGLG DP LKW ++EL+H RWAM GIF+ + + +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +++ +GW E +RW D P S + + P
Sbjct: 143 TPSWYTAGEQEYFT---DKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFP------ 193
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++ +
Sbjct: 194 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGAW 245
Query: 239 FEA 241
F+A
Sbjct: 246 FQA 248
>gi|145079606|tpg|DAA05920.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca4 [Mesostigma viride]
Length = 238
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/237 (38%), Positives = 117/237 (49%), Gaps = 45/237 (18%)
Query: 28 LAGTNRVTSSKKSV--VVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
+A R T +K VV+A + W P GN WLDGSLPGD+G+DPLGL
Sbjct: 12 VASVARATPAKAQAKFVVSASSNRPVWFP-----GNAPR-AWLDGSLPGDFGYDPLGLSS 65
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIF-------VGQAWSGIPWFEAGADPGAIAPFSFG 138
DP LKW +AEL + RWAM V G+ VG + + W+EA P +
Sbjct: 66 DPQVLKWMVQAELQNARWAMLGVAGMLGADLANKVGLP-AAVQWYEA---PLVDYQADWK 121
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN---ATGEQGYPGGKFF 195
+LL QL+L WVE +RW DF +P S + A+ F N +T GYPGG F
Sbjct: 122 TLLVVQLVLHAWVEGRRWADFHSPGSAN----------ADPFGNSLPSTATTGYPGGP-F 170
Query: 196 DPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML-IFYFEAGQGKTPLGAL 251
DPL + L LK+ EIK+ RLAMVA L +F + G +PL L
Sbjct: 171 DPLGFS-----------KGNLPELKLKEIKNGRLAMVASLGLFVQYSATGASPLDNL 216
>gi|302829360|ref|XP_002946247.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
gi|300269062|gb|EFJ53242.1| hypothetical protein VOLCADRAFT_108856 [Volvox carteri f.
nagariensis]
Length = 256
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 83/221 (37%), Positives = 106/221 (47%), Gaps = 30/221 (13%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R + + VVA + W+P P L G LPGD+GFDPLGLG +P LKW
Sbjct: 12 RPSGVARRSVVAKASSRPLWLPGST------PPAHLKGELPGDFGFDPLGLGANPDSLKW 65
Query: 93 YREAELIHGRWAMAAVVGIFVGQ-AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWV 151
+RE+EL+H RWAMAAV GI V + + W+ AG+ +P LL + M WV
Sbjct: 66 FRESELVHSRWAMAAVAGILVQEIVRPDVFWYSAGSQ--VESPLGPLGLLAFEFFCMHWV 123
Query: 152 ESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIP 211
E +RW D P S + + E GYPGG F +IP
Sbjct: 124 ELRRWQDLRKPGSVDQD------PIFSQYKLPPHEPGYPGGVF------------APFIP 165
Query: 212 DTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L LKV EIK+ RLAM+A + F A GK P+ AL
Sbjct: 166 G--DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAAL 204
>gi|18376587|emb|CAC81065.1| putative chlorophyll A-B binding protein of LHCI type II precursor
[Picea abies]
Length = 278
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/184 (38%), Positives = 99/184 (53%), Gaps = 25/184 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLP D+GFDPLGLG DP LKW ++EL+H RWAM GIF+ + + +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 121 --PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W+ A G + F+ +L +++ +GW E +RW D P S + + P
Sbjct: 143 TPSWYTA----GELEYFTDKTTLFVVEMIFLGWAEGRRWADIIKPGSVNTDPIFP----- 193
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
N + GYPGG +FDPL G EK+ L+ EIK+ RLAM+A++
Sbjct: 194 -NNKLTGTDVGYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLAVMGA 244
Query: 238 YFEA 241
+F+A
Sbjct: 245 WFQA 248
>gi|226499760|ref|NP_001148893.1| chlorophyll a-b binding protein [Zea mays]
gi|195622990|gb|ACG33325.1| chlorophyll a-b binding protein [Zea mays]
gi|414887286|tpg|DAA63300.1| TPA: chlorophyll a-b binding protein isoform 1 [Zea mays]
gi|414887287|tpg|DAA63301.1| TPA: chlorophyll a-b binding protein isoform 2 [Zea mays]
gi|414887288|tpg|DAA63302.1| TPA: chlorophyll a-b binding protein isoform 3 [Zea mays]
Length = 270
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 97/183 (53%), Gaps = 23/183 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--- 121
P WLDGSLPGD+GFDP GLG DP L+W +AEL+H RWAM GIF+ + + I
Sbjct: 75 PPWLDGSLPGDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLN 134
Query: 122 ---WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +L+L+GW E +RW D P S + + P ++
Sbjct: 135 TPFWYTAGEQQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGSVNTDPIFPSNKLTG 191
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
+ GYPGG +FDPL EK+ L+ EIK+ RLAM+A++ +
Sbjct: 192 T------DVGYPGGLWFDPLGWGSG--------SPEKIKELRTKEIKNGRLAMLAVMGAW 237
Query: 239 FEA 241
F+A
Sbjct: 238 FQA 240
>gi|168067076|ref|XP_001785452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168067086|ref|XP_001785457.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662935|gb|EDQ49732.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662940|gb|EDQ49737.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 81/233 (34%), Positives = 103/233 (44%), Gaps = 90/233 (38%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK-------------------- 91
W P + PEWLDGSLPGDYGFDPL LGK P +L+
Sbjct: 64 WFPGARA------PEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIG 117
Query: 92 ------------------------WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA 127
+RE ELIHGRWAM A++G +A++G+ W +AG
Sbjct: 118 TRISKKEEIAPTPFQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGK 177
Query: 128 DP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
G PFS SL+ + L+G++E +R + +PE +
Sbjct: 178 VELVDGASYFGLPLPFSITSLVYIEAFLVGFIEFQRNAE-LDPEKRL------------- 223
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGGKFFDPL A T EK + LK+AEIKHARLAMV
Sbjct: 224 ---------YPGGKFFDPLNFADT---------EEKKETLKLAEIKHARLAMV 258
>gi|40714509|dbj|BAD06918.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 264
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 119/219 (54%), Gaps = 41/219 (18%)
Query: 44 AALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRW 103
AALP SW+P G +L P +L+G+LPGD+GFDPL LG+DP LKWY +AEL++ R+
Sbjct: 56 AALP---SWMP----GADL--PGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARF 106
Query: 104 AMAAVVGIFV-------GQAW--SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESK 154
AM AV GI V G +W +G+ W++AG AP S SL G Q+LL WVE +
Sbjct: 107 AMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFE-YFAPAS--SLFGVQMLLFAWVEIR 163
Query: 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA-GTIKDGVYIPDT 213
R+ DF P S + + N E GYPGG FDP + G IK
Sbjct: 164 RYQDFVKPGSANQD-----PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKS------- 210
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LK+ EIK+ RLAM+A F +A G TPL L
Sbjct: 211 -----LKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNL 244
>gi|87313213|gb|ABD37903.1| light-harvesting chlorophyll-a/b binding protein Lhca1
[Chlamydomonas incerta]
Length = 233
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 119/219 (54%), Gaps = 41/219 (18%)
Query: 44 AALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRW 103
AALP SW+P G +L P +L+G+LPGD+GFDPL LG+DP LKWY +AEL++ R+
Sbjct: 42 AALP---SWMP----GADL--PGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARF 92
Query: 104 AMAAVVGIFV-------GQAW--SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESK 154
AM AV GI V G +W +G+ W++AG AP S SL G Q+LL WVE +
Sbjct: 93 AMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFE-YFAPAS--SLFGVQMLLFAWVEIR 149
Query: 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA-GTIKDGVYIPDT 213
R+ DF P S + + N E GYPGG FDP + G IK
Sbjct: 150 RYQDFVKPGSANQD-----PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKS------- 196
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LK+ EIK+ RLAM+A F +A G TPL L
Sbjct: 197 -----LKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNL 230
>gi|159480898|ref|XP_001698519.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158282259|gb|EDP08012.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 262
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 93/219 (42%), Positives = 119/219 (54%), Gaps = 41/219 (18%)
Query: 44 AALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRW 103
AALP SW+P G +L P +L+G+LPGD+GFDPL LG+DP LKWY +AEL++ R+
Sbjct: 56 AALP---SWMP----GADL--PGYLNGTLPGDFGFDPLYLGQDPVKLKWYAQAELMNARF 106
Query: 104 AMAAVVGIFV-------GQAW--SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESK 154
AM AV GI V G +W +G+ W++AG AP S SL G Q+LL WVE +
Sbjct: 107 AMLAVAGILVPELLSNIGFSWPGAGVAWYDAGKFE-YFAPAS--SLFGVQMLLFAWVEIR 163
Query: 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA-GTIKDGVYIPDT 213
R+ DF P S + + N E GYPGG FDP + G IK
Sbjct: 164 RYQDFVKPGSANQD-----PIFTNNKLPDGNEPGYPGG-IFDPFGWSKGDIKS------- 210
Query: 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LK+ EIK+ RLAM+A F +A G TPL L
Sbjct: 211 -----LKLKEIKNGRLAMLAFAGFIGQAYTTGTTPLKNL 244
>gi|159479992|ref|XP_001698070.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|40714517|dbj|BAD06922.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
gi|158273869|gb|EDO99655.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 257
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 110/226 (48%), Gaps = 31/226 (13%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDP 87
+A S+++SVV A + W+P P L G LPGD+GFDPLGLG +
Sbjct: 9 VAARPSARSARRSVVAKA-SSRPLWLPGS------TPPAHLKGDLPGDFGFDPLGLGANA 61
Query: 88 AFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGIPWFEAGADPGAIAPFSFGSLLGTQLL 146
LKW++E+EL+H RWAMAAV GI V + + W+ AG + +P LL +
Sbjct: 62 ESLKWFKESELVHSRWAMAAVAGILVQEIVRPDVFWYNAGKE--VESPLGPLGLLAVEFF 119
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LM WVE +RW D P S + + E GYPGG F
Sbjct: 120 LMHWVEVRRWQDLRKPGSVDQD------PIFSQYKLPPHEVGYPGGVF------------ 161
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+IP L LKV EIK+ RLAM+A + F A GK P+ AL
Sbjct: 162 APFIPG--DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAAL 205
>gi|87313221|gb|ABD37907.1| light-harvesting chlorophyll-a/b binding protein Lhca5
[Chlamydomonas incerta]
Length = 257
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 84/226 (37%), Positives = 110/226 (48%), Gaps = 31/226 (13%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDP 87
+A S+++SVV A + W+P P L G LPGD+GFDPLGLG +
Sbjct: 9 MAARPSARSARRSVVSKA-SSRPLWLPGST------PPAHLKGELPGDFGFDPLGLGANA 61
Query: 88 AFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGIPWFEAGADPGAIAPFSFGSLLGTQLL 146
LKW++E+EL+H RWAMAAV GI V + + W+ AG + +P LL +
Sbjct: 62 ESLKWFKESELVHCRWAMAAVAGILVQEIVRPDVFWYNAGKE--VESPLGPLGLLAVEFF 119
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LM WVE +RW D P S + + E GYPGG F
Sbjct: 120 LMHWVELRRWQDLRKPGSVDQD------PIFSQYKLPAHEVGYPGGVF------------ 161
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+IP L LKV EIK+ RLAM+A + F A GK P+ AL
Sbjct: 162 APFIPG--DLAELKVKEIKNGRLAMLAFVGFVMAAQVTGKGPIAAL 205
>gi|303274210|ref|XP_003056428.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226462512|gb|EEH59804.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 250
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 73/183 (39%), Positives = 98/183 (53%), Gaps = 24/183 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI----FVGQAWSGI 120
P+ LDG++ GDYGFDPLGLG+D L+WY++AEL+H RWAM V G+ VG +
Sbjct: 52 PKHLDGTMAGDYGFDPLGLGEDKVALQWYQQAELVHARWAMLGVAGMAAPELVGNPFVDG 111
Query: 121 P---WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
P W EA G IA +L Q+ M W E +RW D NP S A P+
Sbjct: 112 PLPNWAEAPFFDGYIA--DANTLFVVQMFFMNWAEVRRWQDMKNPGSVH---ADPYD--- 163
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
EN + GYPGG F+P+ +A ++ D EK L+ EI + RLAMVA +
Sbjct: 164 ENRKCTGSDVGYPGGGLFNPMGMAKSVAD-------EKA--LRAKEIANGRLAMVAAMGC 214
Query: 238 YFE 240
+ +
Sbjct: 215 FIQ 217
>gi|302831910|ref|XP_002947520.1| light harvesting complex A [Volvox carteri f. nagariensis]
gi|300267384|gb|EFJ51568.1| light harvesting complex A [Volvox carteri f. nagariensis]
Length = 264
Score = 114 bits (286), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 87/215 (40%), Positives = 112/215 (52%), Gaps = 36/215 (16%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P SW+P G L P +LDG+LPGD+GFDPL LG +P+ LKWY +AEL+H R+AM
Sbjct: 56 PSLPSWMP----GATL--PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAML 109
Query: 107 AVVGIFV-------GQAW--SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
AV GI V G +W +G+ W++AG AP S SL G Q+LL W E +R+
Sbjct: 110 AVAGILVPELLTNIGFSWPGAGVAWYDAGKF-QYFAPAS--SLFGVQMLLFAWAELRRYQ 166
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
DF P S + + + N E GYPGG FDP + +
Sbjct: 167 DFVKPGSANQD-----PIFSNNKLPDGNEPGYPGG-IFDPFGWS-----------KGDMK 209
Query: 218 RLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LK EIK+ RLAM+A F +A G TPL L
Sbjct: 210 SLKTKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNL 244
>gi|145688411|gb|ABO71660.2| LhCa2 protein [Brassica juncea]
Length = 256
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 70/182 (38%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PEWLDGSLPGD+GFDPLGL DP LKW +AE++H RWAM GIF+ + + I
Sbjct: 61 PEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFLTKIGILN 120
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +L+L+GW E +RW D P S + + P
Sbjct: 121 TPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFP------ 171
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL G K+ L+ EIK+ RL M+A++ +
Sbjct: 172 NNKLTGTDVGYPGGLWFDPL--------GWGSGSPAKIKELRTKEIKNGRLTMLAVMGAW 223
Query: 239 FE 240
F+
Sbjct: 224 FQ 225
>gi|384253050|gb|EIE26525.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Coccomyxa subellipsoidea C-169]
Length = 272
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 86/227 (37%), Positives = 116/227 (51%), Gaps = 34/227 (14%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
+R +++VV A + W+P GG+ P LDGSLPGD+GFDPLGLG DP L
Sbjct: 24 VSRARPVRQTVVRAE---RALWLP----GGD--APAHLDGSLPGDFGFDPLGLGADPERL 74
Query: 91 KWYREAELIHGRWAMAAVVGIFVGQAWS-GIPWFEAGAD---PGAIAPFSFGSLLGTQLL 146
W+ E+E +H RWAM AV GI V + + W+EA P +P + L+ +L
Sbjct: 75 AWFAESERVHARWAMLAVAGIAVQEVVRPDVFWYEAALKSPMPFGNSPAAILGLVAFELF 134
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
M +VE +R DF NP SQ + ++ ++ E GYPGG F
Sbjct: 135 AMHFVEVRRAYDFKNPGSQDQDPIFSNNKLPKH------EVGYPGGIF------------ 176
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGALG 252
IP L LK+ EIK+ RLAM+A F +A GK PL +LG
Sbjct: 177 APVIPG--DLAELKLKEIKNGRLAMLAFAGFVMQAQVTGKGPLASLG 221
>gi|302839735|ref|XP_002951424.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
gi|300263399|gb|EFJ47600.1| chlorophyll a/b-binding protein of photosystem II [Volvox carteri
f. nagariensis]
Length = 317
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 109/253 (43%), Gaps = 91/253 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF---------------------- 89
W+P N + PEWLDGSLPGD GFDPLGL K F
Sbjct: 90 WLP------NTVRPEWLDGSLPGDRGFDPLGLAKPSEFVVIGVDENDQNAAKNNKGSVEA 143
Query: 90 -----------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 126
L +RE ELIHGRWAM A +G V +A +G+ W +AG
Sbjct: 144 VVTATPDEVSAENRLAPYSEVFGLARFRECELIHGRWAMLACLGCLVAEATTGVSWVDAG 203
Query: 127 -------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
+ G PFS L+ +++L+G E R + NPE +
Sbjct: 204 KVELDGASYAGLSLPFSITQLIWIEVILVGGAEIYRNTE-TNPEKRC------------- 249
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG FFDPL LA D E+ RLK AEIKHARLAMV+ +
Sbjct: 250 ---------YPGG-FFDPLKLASE--------DEERAFRLKTAEIKHARLAMVSFFGYSV 291
Query: 240 EA-GQGKTPLGAL 251
+A G+ LG+L
Sbjct: 292 QAFTTGEGALGSL 304
>gi|732534|gb|AAB40979.1| light harvesting complex a [Volvox carteri]
Length = 264
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 105/197 (53%), Gaps = 30/197 (15%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +LDG+LPGD+GFDPL LG +P+ LKWY +AEL+H R+AM AV GI V G +W
Sbjct: 68 PGYLDGTLPGDFGFDPLYLGAEPSKLKWYAQAELVHARFAMLAVAGILVPELLTNIGFSW 127
Query: 118 --SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
+G+ W++AG AP S SL G Q+LL W E +R+ DF P S + +
Sbjct: 128 PGAGVAWYDAGKF-QYFAPAS--SLFGVQMLLFAWAELRRYQDFVKPGSANQD-----PI 179
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ N E GYPGG FDP + + LK EIK+ RLAM+A
Sbjct: 180 FSNNKLPDGNEPGYPGG-IFDPFGWS-----------KGDMKSLKTKEIKNGRLAMLAFA 227
Query: 236 IFYFEA-GQGKTPLGAL 251
F +A G TPL L
Sbjct: 228 GFAAQAYTTGTTPLKNL 244
>gi|168040609|ref|XP_001772786.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168040679|ref|XP_001772821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675863|gb|EDQ62353.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675898|gb|EDQ62388.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 296
Score = 113 bits (282), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/220 (35%), Positives = 100/220 (45%), Gaps = 84/220 (38%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLK--------------------------------- 91
PEWLDGSLPGDYGFDPL LGK P +L+
Sbjct: 71 PEWLDGSLPGDYGFDPLSLGKSPEYLQIELDSLNQNLAKNEAGDVIGTRISKKEEIAPTP 130
Query: 92 -----------WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAI 132
+RE ELIHGRWAM A++G +A++G+ W +AG G
Sbjct: 131 FQPYSEVFGLQRFRECELIHGRWAMLAILGALSVEAFTGVTWQDAGKVELVDGASYFGLP 190
Query: 133 APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGG 192
PFS SL+ + L+G++E +R + +PE + YPGG
Sbjct: 191 LPFSITSLVYIEAFLVGFIEFQRNAE-LDPEKRL----------------------YPGG 227
Query: 193 KFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
KFFDPL A T +K + LK+AEIKHARLAMV
Sbjct: 228 KFFDPLNFADT---------EDKKETLKLAEIKHARLAMV 258
>gi|307109464|gb|EFN57702.1| hypothetical protein CHLNCDRAFT_59626 [Chlorella variabilis]
Length = 249
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 88/238 (36%), Positives = 116/238 (48%), Gaps = 30/238 (12%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
++ L T+ +++S VV + W P V P LDG+LPGD+GFDPL L
Sbjct: 8 TRVALGRTSSRVQARRSAVVVYAASRPLWQPGV------TPPAHLDGTLPGDFGFDPLNL 61
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG---ADPGAIAP 134
G + L WYR AEL +GRWAM V GI + + W +AG A+ P
Sbjct: 62 GVNKEALDWYRNAELQNGRWAMLGVAGIIFPAELTRVGLLNVPDWADAGKVYAESENAIP 121
Query: 135 FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKF 194
F+ SLL Q L +VE KRW D P SQ+ + E+ +G GYPGG
Sbjct: 122 FA--SLLMVQFFLFNFVEIKRWEDIKKPGSQAEAGSF---LGFESAFKGSGVSGYPGGP- 175
Query: 195 FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
F+PL L + K E +D K EI++ RLAM+A L F + A GK PL L
Sbjct: 176 FNPLGLGNSSK--------ESMDDFKWREIRNGRLAMMAFLGFLAQHAATGKGPLDNL 225
>gi|13877547|gb|AAK43851.1|AF370474_1 chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|23198310|gb|AAN15682.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 111/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
I+P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 63 ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 123 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R N E S ++ YPG
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
GKFFDPL LA D EK +L++AEIKHARLAMVA L F + A GK PL
Sbjct: 220 GKFFDPLSLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>gi|357468737|ref|XP_003604653.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355505708|gb|AES86850.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 347
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/250 (34%), Positives = 111/250 (44%), Gaps = 90/250 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K +PEWLDGSL GDYGFDP GLGK +L++
Sbjct: 115 WFPGAK------SPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 168
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 169 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 228
Query: 129 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
G PFS +L+ ++L++G++E +R N E S
Sbjct: 229 ELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR-----NAELDS-------------- 269
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
++ YPGGKFFDPL LA D EK L++AEIKHARLAMVA L F +
Sbjct: 270 ----EKRLYPGGKFFDPLGLAS---------DPEKKATLQLAEIKHARLAMVAFLGFAVQ 316
Query: 241 -AGQGKTPLG 249
A GK PL
Sbjct: 317 AAATGKGPLN 326
>gi|169930144|gb|ACB05669.1| chloroplast chlorophyll a/b binding protein [Capsicum annuum]
Length = 250
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 113/226 (50%), Gaps = 38/226 (16%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R ++S S V A K W+P L +P +LDGSLPGD GFDPLGL +DP LKW
Sbjct: 37 RPSTSNNSFKVEA--KKGEWLPG------LASPAYLDGSLPGDNGFDPLGLAEDPENLKW 88
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
Y +AEL++GRWAM V G+ + + ++ I W++AG A S +L + +
Sbjct: 89 YIQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGK---AEYFASSSTLFVIEFI 145
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L +VE +RW D NP + + +N++ E GYPGG F+PL A T
Sbjct: 146 LFHYVEIRRWQDIKNPGCVNQD------PIFKNYSLPPNECGYPGG-IFNPLNFAAT--- 195
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ K E+ + RLAM+A L F + GK P L
Sbjct: 196 ----------EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL 231
>gi|412990451|emb|CCO19769.1| unknown [Bathycoccus prasinos]
Length = 241
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 112/234 (47%), Gaps = 36/234 (15%)
Query: 20 GGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFD 79
G ++ ++ T R +S V+A+ + W+P P L G LPGDYGFD
Sbjct: 10 GTQRISTHISATKRTV---RSSVIASAESRPLWMPGTAA------PSHLKGMLPGDYGFD 60
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW-----SGIP-WFEAGADPGAIA 133
PL LG+D L WY +AEL H RWAM V G+ + S +P W +A G A
Sbjct: 61 PLNLGEDSKDLDWYVQAELQHARWAMLGVAGMAAPELLTMFGVSDLPNWHDAPFYNGYFA 120
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
S +L Q+ +M W E +RW D NP S S + A P ++ G+ GYPGG
Sbjct: 121 --SSTTLFTVQMFMMNWAEIRRWQDIKNPGSVSEDPAFPGNKL------PAGDVGYPGG- 171
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML---IFYFEAGQG 244
F+P+ Y T++L LK EI + RLAMVA L I Y G G
Sbjct: 172 IFNPMN---------YGKSTDELKALKAKEIANGRLAMVAALGCFIQYDHTGVG 216
>gi|20260162|gb|AAM12979.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
Length = 290
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 111/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
I+P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 63 ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 123 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R N E S ++ YPG
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
GKFFDPL LA D EK +L++AEIKHARLAMVA L F + A GK PL
Sbjct: 220 GKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>gi|15241005|ref|NP_195773.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
gi|38502901|sp|Q07473.1|CB4A_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.1,
chloroplastic; AltName: Full=LHCB4.1; AltName:
Full=LHCII protein 4.1; Flags: Precursor
gi|298036|emb|CAA50712.1| CP29 [Arabidopsis thaliana]
gi|7327812|emb|CAB82269.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|15081815|gb|AAK82562.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16323075|gb|AAL15272.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
gi|16648983|gb|AAL24343.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|20148703|gb|AAM10242.1| chlorophyll a/b-binding protein CP29 [Arabidopsis thaliana]
gi|22137102|gb|AAM91396.1| At5g01530/F7A7_50 [Arabidopsis thaliana]
gi|110741014|dbj|BAE98601.1| Lhcb4- protein [Arabidopsis thaliana]
gi|332002974|gb|AED90357.1| chlorophyll a-b binding protein CP29.1 [Arabidopsis thaliana]
Length = 290
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 111/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
I+P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 63 ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 123 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R N E S ++ YPG
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
GKFFDPL LA D EK +L++AEIKHARLAMVA L F + A GK PL
Sbjct: 220 GKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>gi|307110650|gb|EFN58886.1| hypothetical protein CHLNCDRAFT_29899 [Chlorella variabilis]
Length = 266
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 106/216 (49%), Gaps = 29/216 (13%)
Query: 39 KSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAEL 98
+S VV + +W+P GN + LPG++GFDPLGLG +P L W+ E+E
Sbjct: 27 RSGVVVRAAARANWLP-----GNDFPAHLENSPLPGNFGFDPLGLGANPERLAWFAESER 81
Query: 99 IHGRWAMAAVVGIFVGQ-AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
+H RWAM V GI V + + W+ + D PF L+ +L +M WVES+R
Sbjct: 82 VHCRWAMLGVAGILVQELVRPDVFWYTSAVD--VELPFDITGLVAFELFVMHWVESRRGY 139
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
D NP S + NF + E GYPGG F ++P + ++
Sbjct: 140 DIKNPGSMDQD------PIFSNFKLPSHEPGYPGGIF------------APFVPGS--ME 179
Query: 218 RLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGALG 252
LKV EIK+ RLAM+A + F A G PL ALG
Sbjct: 180 ELKVKEIKNGRLAMLAFIGFTMAAQISGLNPLAALG 215
>gi|358346846|ref|XP_003637475.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355503410|gb|AES84613.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 294
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 116/261 (44%), Gaps = 56/261 (21%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
G +F+ K + +A RV S+ +V AA P + W P P WLDGS
Sbjct: 27 GTSKAFLGRKLKVNSNIAAPVRVRSTT-TVCAAAEPDRPLWFPGST------PPPWLDGS 79
Query: 72 LPGDYGFDPLGL--------------------------GKDPAFLKWYREAELIHGRWAM 105
LPGD+GFDPLGL DP LKW +AEL+H RWAM
Sbjct: 80 LPGDFGFDPLGLYNGGLIILAGNTNDHNINQSFGCDSTASDPESLKWNVQAELVHCRWAM 139
Query: 106 AAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDF 159
GIF+ + + I W+ AG +L +L+ +GW E +RW D
Sbjct: 140 LGAAGIFIPEFLTKIGILNTPSWYTAGEQEYFT---DTTTLFIVELIFIGWAEGRRWADI 196
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
NP + + P ++ + GYPGG +FDPL G +KL L
Sbjct: 197 LNPGCVNTDPIFPNNKLTGT------DVGYPGGLWFDPL--------GWGSGSPQKLKEL 242
Query: 220 KVAEIKHARLAMVAMLIFYFE 240
+ EIK+ RLAM+A++ +F+
Sbjct: 243 RTKEIKNGRLAMLAVMGAWFQ 263
Score = 36.6 bits (83), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G F
Sbjct: 217 DVGYPGGLWFDPLGWGSGSPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 276
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 277 AHLADPGHATIFA 289
>gi|297810243|ref|XP_002873005.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
gi|297318842|gb|EFH49264.1| chlorophyll a/b-binding protein CP29 [Arabidopsis lyrata subsp.
lyrata]
Length = 291
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/238 (35%), Positives = 111/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
I+PEWLDGSL GDYGFDP GLGK +L++
Sbjct: 64 ISPEWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 123
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 124 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 183
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R N E S ++ YPG
Sbjct: 184 PLPFSISTLIWIEVLVVGYIEFQR-----NAELDS------------------EKRLYPG 220
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
GK+FDPL LA D EK +L++AEIKHARLAMVA L F + A GK PL
Sbjct: 221 GKYFDPLGLAA---------DPEKRAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 269
>gi|217072728|gb|ACJ84724.1| unknown [Medicago truncatula]
gi|388501002|gb|AFK38567.1| unknown [Medicago truncatula]
Length = 289
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 87/249 (34%), Positives = 111/249 (44%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K +PEWLDGSL GDYGFDP GLGK +L++
Sbjct: 57 WFPGAK------SPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 110
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 111 TRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 170
Query: 129 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
G PFS +L+ ++L++G++E +R N E S
Sbjct: 171 ELVEGSTYLGQPLPFSITTLIWIEVLVIGYIEFQR-----NAELDS-------------- 211
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
++ YPGGKFFDPL LA D EK L++AEIKHARLAMVA L F +
Sbjct: 212 ----EKRLYPGGKFFDPLGLAS---------DPEKKATLQLAEIKHARLAMVAFLGFAVQ 258
Query: 241 -AGQGKTPL 248
A GK PL
Sbjct: 259 AAATGKGPL 267
>gi|312281599|dbj|BAJ33665.1| unnamed protein product [Thellungiella halophila]
Length = 288
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 113/249 (45%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K +P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 55 WFPGAK------SPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIG 108
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 109 TRTEEAAPKSTPFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 168
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R N E S
Sbjct: 169 ELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR-----NAELDS-------------- 209
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
++ YPGGKFFDPL LA D EK +L++AEIKHARLAMVA L F +
Sbjct: 210 ----EKRLYPGGKFFDPLGLAS---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQ 256
Query: 241 -AGQGKTPL 248
A GK PL
Sbjct: 257 AAATGKGPL 265
>gi|357461189|ref|XP_003600876.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
gi|355489924|gb|AES71127.1| Chlorophyll a-b binding protein CP29.3 [Medicago truncatula]
Length = 278
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 110/237 (46%), Gaps = 84/237 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDG++ GD GFDPLGL K +L++
Sbjct: 67 PEWLDGTMIGDRGFDPLGLAKPVEYLQFDLDSLDQNLAKNLAGDIIGTRVESTDVNPTPF 126
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIA 133
+RE E+IHGRWAM +G +A++G+ W +AG G
Sbjct: 127 QPYTEVFGIQRFRECEVIHGRWAMLGALGALAVEAFTGVAWQDAGKVELVEGSSYFGFSL 186
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ ++L++G++E +R + +PE + YPGGK
Sbjct: 187 PFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPGGK 223
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLG 249
FFDPL LA D E+ +RL++AEIKH+RLAMV LIF +A GK P+G
Sbjct: 224 FFDPLGLAS---------DPEEKERLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPIG 271
>gi|449460307|ref|XP_004147887.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
gi|449516143|ref|XP_004165107.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Cucumis sativus]
Length = 284
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/249 (34%), Positives = 111/249 (44%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PEWLDGSL GDYGFDP GLGK +L++
Sbjct: 53 WFPGAKA------PEWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNVAGDIIG 106
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 107 TRFESAEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 166
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 167 ELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRL-------------- 211
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGGKFFDPL LA D EK L++AEIKHARLAMVA L F +
Sbjct: 212 --------YPGGKFFDPLGLA---------EDPEKKAVLQLAEIKHARLAMVAFLGFAVQ 254
Query: 241 AG-QGKTPL 248
A GK PL
Sbjct: 255 AAVTGKGPL 263
>gi|255574383|ref|XP_002528105.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223532494|gb|EEF34284.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 285
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 92/289 (31%), Positives = 122/289 (42%), Gaps = 93/289 (32%)
Query: 13 LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
L + N G+ GT + + + + P W P K PEWLDGSL
Sbjct: 18 LPDVYSNSGRVQARFGFGTKKSAPKRSAKPTSDRP---LWYPGAKA------PEWLDGSL 68
Query: 73 PGDYGFDPLGLGKDPAFLKW---------------------------------------- 92
GDYGFDP GLGK +L++
Sbjct: 69 VGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNIAGDIIGTRTEAADVKSTPFQPYSEVFG 128
Query: 93 ---YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLL 141
+RE ELIHGRWAM A +G + +G+ W +AG G PFS +L+
Sbjct: 129 LQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLI 188
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
++L++G++E +R + +PE + YPGGKFFDPL LA
Sbjct: 189 WIEVLVIGYIEFQRNSE-LDPEKRL----------------------YPGGKFFDPLGLA 225
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLG 249
D EK L++AEIKHARLAMVA L F +A GK PL
Sbjct: 226 ---------EDPEKKATLQLAEIKHARLAMVAFLGFAVQAAVTGKGPLN 265
>gi|193872600|gb|ACF23028.1| ST49-6 [Eutrema halophilum]
Length = 215
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 98/193 (50%), Gaps = 26/193 (13%)
Query: 16 SFINGGK---KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
SF+ G K K++A + +R + ++V AA P + W P PEWLDGSL
Sbjct: 23 SFLGGKKLRLKNKASVPAVSRSAALVRAV--AADPERPIWFPGS------TPPEWLDGSL 74
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAG 126
PGD+GFDPLGL DP LKW +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 75 PGDFGFDPLGLSSDPDSLKWNAQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAG 134
Query: 127 ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+L +L+L+GW E +RW D P S + + P N +
Sbjct: 135 EQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPIFP------NNKLTGTD 185
Query: 187 QGYPGGKFFDPLC 199
GYPGG +FDPL
Sbjct: 186 VGYPGGLWFDPLV 198
>gi|374412430|gb|AEZ49173.1| chlorophyll a/b binding protein 4 [Wolffia australiana]
Length = 250
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 90/260 (34%), Positives = 128/260 (49%), Gaps = 40/260 (15%)
Query: 1 MAAATSGAVLNGLGSS-FINGGKKSQALLAGTNRVTSSKKSVVVAALPPKK-SWIPAVKG 58
+ A TS AV+ S F+ G S A L +R S+ ++V + KK W+P
Sbjct: 4 VTAQTSLAVIRPCSRSRFLTGS--SPAKLRPVSRNPSASRAVPAFRVSAKKGEWLPG--- 58
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
L +P++L+GSLPGD GFDPLGL +DP LKW+ +AEL +GRWAM V G+ + + ++
Sbjct: 59 ---LASPDYLNGSLPGDNGFDPLGLAEDPENLKWFVQAELQNGRWAMLGVAGMLLPEVFT 115
Query: 119 GI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
I W++AG S +L + +L +VE +RW D NP S + +
Sbjct: 116 KIGIINAPQWYDAGKQEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIFK 172
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
R N E GYPGG F+PL A +++ K EI + RLAM+
Sbjct: 173 SYRLPPN------EVGYPGG-IFNPLNFAPSLE-------------AKEKEIANGRLAML 212
Query: 233 AMLIFYFEAG-QGKTPLGAL 251
A L F + GK P L
Sbjct: 213 AFLGFLIQHNLTGKGPFDNL 232
>gi|225457389|ref|XP_002284856.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Vitis
vinifera]
gi|147843386|emb|CAN79984.1| hypothetical protein VITISV_038035 [Vitis vinifera]
Length = 252
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 113/225 (50%), Gaps = 38/225 (16%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+SS +S V A K W+P L +P +LDGSLPGD GFDPLGL +DP LKWY
Sbjct: 40 TSSSYRSFKVEA--KKGEWLPG------LSSPSYLDGSLPGDNGFDPLGLAEDPENLKWY 91
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL++ RWAM V G+ + + ++ I W++AG A S +L + +L
Sbjct: 92 VQAELVNSRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFIL 148
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP S + + +N++ E GYPGG F+PL A T
Sbjct: 149 FHYVEIRRWQDIKNPGSVNQD------PIFKNYSLPPNEVGYPGG-IFNPLNFAPT---- 197
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ K E+ + RLAM+A L F + GK P L
Sbjct: 198 ---------EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL 233
>gi|15081739|gb|AAK82524.1| AT5g01530/F7A7_50 [Arabidopsis thaliana]
Length = 290
Score = 110 bits (275), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/237 (35%), Positives = 110/237 (46%), Gaps = 84/237 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
I+P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 63 ISPDWLDGSLVGDYGFDPFGLGKPAEYLQFDIDSLDQNLAKNLAGDVIGTRTEAADAKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 123 PFQPYSEVFGIQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R N E S ++ YPG
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQR-----NAELDS------------------EKRLYPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTP 247
GKFFDPL LA D EK +L++AEIKHARLAMVA L F + A GK P
Sbjct: 220 GKFFDPLGLAA---------DPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGP 267
>gi|15231990|ref|NP_187506.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
gi|38503262|sp|Q9XF88.1|CB4B_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.2,
chloroplastic; AltName: Full=LHCB4.2; AltName:
Full=LHCII protein 4.2; Flags: Precursor
gi|4741954|gb|AAD28774.1|AF134127_1 Lhcb4.2 protein [Arabidopsis thaliana]
gi|6403491|gb|AAF07831.1|AC010871_7 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17473745|gb|AAL38316.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148559|gb|AAM10170.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332641177|gb|AEE74698.1| chlorophyll a-b binding protein CP29.2 [Arabidopsis thaliana]
Length = 287
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 89/271 (32%), Positives = 120/271 (44%), Gaps = 93/271 (34%)
Query: 30 GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF 89
GT + + K V++ P W P K +PE+LDGSL GDYGFDP GLGK +
Sbjct: 36 GTKKASPKKAKTVISDRP---LWFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEY 86
Query: 90 LKW-------------------------------------------YREAELIHGRWAMA 106
L++ +RE ELIHGRWAM
Sbjct: 87 LQFDLDSLDQNLAKNLYGEVIGTRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAML 146
Query: 107 AVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 158
A +G + +G+ W +AG + G PFS +L+ ++L++G++E +R
Sbjct: 147 ATLGAITVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLIWIEVLVIGYIEFQR--- 203
Query: 159 FFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDR 218
N E S ++ YPGGKFFDPL LA D K +
Sbjct: 204 --NAELDS------------------EKRLYPGGKFFDPLGLAS---------DPVKKAQ 234
Query: 219 LKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
L++AEIKHARLAMV L F + A GK PL
Sbjct: 235 LQLAEIKHARLAMVGFLGFAVQAAATGKGPL 265
>gi|412990668|emb|CCO18040.1| unknown [Bathycoccus prasinos]
Length = 227
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 112/242 (46%), Gaps = 41/242 (16%)
Query: 18 INGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYG 77
I + AL + + S++ S VV A + W P V P LDGSLPGD+G
Sbjct: 5 ITSRVNTSALKSRSVSRQSARASFVVKA--QRDVWWPGVDA------PAHLDGSLPGDFG 56
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG---QAWSGIPWFEAGADPGAIAP 134
FDPLGL DP KW +AEL H RWAM V G+ VG W W EAG
Sbjct: 57 FDPLGLSVDPEMKKWMVQAELQHARWAMLGVAGM-VGPDLAPWDTPSWIEAGK------- 108
Query: 135 FSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYP 190
F + G L Q+ +M W E +RW D +P S + + N + + GYP
Sbjct: 109 FEYWAPAGPLFFIQMAMMNWAEVRRWQDMKDPGSMNKD-----PLFGYNANDTNTDVGYP 163
Query: 191 GGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML-IFYFEAGQGKTPLG 249
GG FD L A + LD LK+ EIK+ RLAMVA+ F A G +PL
Sbjct: 164 GG-LFDKLGYA-----------KKDLDTLKLKEIKNGRLAMVAIAGCFVQGATTGVSPLT 211
Query: 250 AL 251
L
Sbjct: 212 NL 213
>gi|384251522|gb|EIE24999.1| light-harvesting chlorophyll a/b-binding protein Lhca3 [Coccomyxa
subellipsoidea C-169]
Length = 274
Score = 110 bits (274), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 117/248 (47%), Gaps = 38/248 (15%)
Query: 16 SFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGD 75
+F+ G K AG S V AA ++ W P V+ P +L+G L GD
Sbjct: 13 AFLTGRKVVSKARAGP--APRSTFQVSAAASQGRRLWAPGVEA------PSYLNGELAGD 64
Query: 76 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGIPWFEAGADP----- 129
YG+DPLGLG P LKWYR+AEL+H RWAM AV GI + G+ ++ AG
Sbjct: 65 YGWDPLGLGAKPEALKWYRQAELVHARWAMLAVAGILAQEIVKPGVFFYNAGLPENLPGI 124
Query: 130 ---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
G + G LL + LL WVE +RW D +S + + ++ E
Sbjct: 125 NFGGPEGKVNLGGLLAWEFLLFHWVEVRRWQDIKKKDSVNQDPIFKGNKVPNP------E 178
Query: 187 QGYPGGKFFDPLCLA-GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQG 244
GYPGG FDP + G K+ ++ EIK+ RLAMVA + F +A G
Sbjct: 179 LGYPGG-IFDPFGFSKGNFKE------------VQTKEIKNGRLAMVAFVGFIIQAQATG 225
Query: 245 KTPLGALG 252
+ PL LG
Sbjct: 226 QGPLANLG 233
>gi|302784975|ref|XP_002974259.1| light-harvesting complex [Selaginella moellendorffii]
gi|300157857|gb|EFJ24481.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 113/250 (45%), Gaps = 91/250 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K P++LDGSL GDYGFDPLGLGK P +L++
Sbjct: 67 WFPGAK------CPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLG 120
Query: 93 -------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA 127
+RE ELIHGRWAM A +G + ++G+ W +AG
Sbjct: 121 ERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGVTWQDAGK 180
Query: 128 DP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
G PF+ +L+ ++L++G++E +R + +PE
Sbjct: 181 VELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPE---------------- 223
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
++ YPGG +FDPL LA D E+ + LK+AEIKHARLAMVA F
Sbjct: 224 ------KRLYPGGSYFDPLGLAA---------DPERKEVLKLAEIKHARLAMVAAFGFAV 268
Query: 240 E-AGQGKTPL 248
+ A GK PL
Sbjct: 269 QAAATGKGPL 278
>gi|302807871|ref|XP_002985629.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146538|gb|EFJ13207.1| light-harvesting complex [Selaginella moellendorffii]
Length = 299
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 113/250 (45%), Gaps = 91/250 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K P++LDGSL GDYGFDPLGLGK P +L++
Sbjct: 67 WFPGAK------CPDYLDGSLVGDYGFDPLGLGKPPTYLQFDVDSLDSSLAKNMPGELLG 120
Query: 93 -------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA 127
+RE ELIHGRWAM A +G + ++G+ W +AG
Sbjct: 121 ERVEDLSTIRATPLQPYTEIFGLQRFRECELIHGRWAMLATLGAIAVETFTGVTWQDAGK 180
Query: 128 DP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
G PF+ +L+ ++L++G++E +R + +PE
Sbjct: 181 VELDQGPSYFGFSLPFTITALVWIEVLVIGFIEFQRNTE-LDPE---------------- 223
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
++ YPGG +FDPL LA D E+ + LK+AEIKHARLAMVA F
Sbjct: 224 ------KRLYPGGSYFDPLGLAA---------DPERKEVLKLAEIKHARLAMVAAFGFAV 268
Query: 240 E-AGQGKTPL 248
+ A GK PL
Sbjct: 269 QAAATGKGPL 278
>gi|225440674|ref|XP_002279834.1| PREDICTED: chlorophyll a-b binding protein CP29.2, chloroplastic
[Vitis vinifera]
gi|147784938|emb|CAN77492.1| hypothetical protein VITISV_010727 [Vitis vinifera]
Length = 288
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 109/238 (45%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ PEWLDG+L GDYGFDP GLGK +L++
Sbjct: 61 VAPEWLDGTLVGDYGFDPFGLGKPAEYLQYDYDSLDQNLAKNIAGDVIGTRFEGGEVKST 120
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G ++ +G+ W +AG + G
Sbjct: 121 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALAVESLTGVTWQDAGKVELIEGSSYLGQ 180
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R + +PE + YPG
Sbjct: 181 PLPFSMTTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPG 217
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 248
GKFFDPL LA D EK L++AEIKHARLAM+ L F +A GK PL
Sbjct: 218 GKFFDPLGLAA---------DPEKKAVLQLAEIKHARLAMIGFLGFAVQAAVTGKGPL 266
>gi|159147191|gb|ABW90990.1| LHCB4 [Bambusa oldhamii]
Length = 287
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 110/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ PE+LDGSL GDYGFDP+GLGK +L++
Sbjct: 59 VAPEYLDGSLVGDYGFDPIGLGKPAEYLQYDLDSLDQNLAKNVAGDIIGTRFEPGEVKST 118
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 119 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELENGSSYLGQ 178
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++LL+G++E +R + +PE + YPG
Sbjct: 179 PLPFSMTTLIWIEVLLIGYIEFQRNAE-LDPEKRL----------------------YPG 215
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
G +FDPL LA D EK +RL++AEIKHARLAMV L F + A GK PL
Sbjct: 216 GSYFDPLGLAS---------DPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 264
>gi|297823921|ref|XP_002879843.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
gi|297325682|gb|EFH56102.1| LHCB4.3 [Arabidopsis lyrata subsp. lyrata]
Length = 276
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 109/239 (45%), Gaps = 85/239 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDGS+ GD GFDP GLGK +L++
Sbjct: 66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQDSSEIKPTPF 125
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIA 133
+RE ELIHGRWAM +G +A +GI W +AG G
Sbjct: 126 QPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPL 185
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ ++L++G++E +R + +PE + YPGG
Sbjct: 186 PFSLTTLIWIEVLVVGYIEFQRNSEL-DPEKRI----------------------YPGG- 221
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+FDPL LA D EKLD LK+AEIKH+RLAMVA LIF +A GK P+ L
Sbjct: 222 YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPISFL 271
>gi|226358411|gb|ACO51068.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 285
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 109/238 (45%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P+WLDGSL GDYGFDP GLGK +L++
Sbjct: 59 VAPDWLDGSLVGDYGFDPFGLGKPAEYLQYDLDSLDQNLAKNMAGEIIGTRTEVADVKAT 118
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 119 PFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVEGSSYLGQ 178
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R + +PE + YPG
Sbjct: 179 PLPFSMTTLIWIEVLVIGFIEFQRNAE-LDPEKRL----------------------YPG 215
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
GK+FDPL LA D EK L++AEIKHARLAMVA L F + A GK PL
Sbjct: 216 GKYFDPLGLAA---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 264
>gi|21594018|gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 109/239 (45%), Gaps = 85/239 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDGS+ GD GFDP GLGK +L++
Sbjct: 66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESSEIKPTPF 125
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIA 133
+RE ELIHGRWAM +G +A +GI W +AG G
Sbjct: 126 QPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPL 185
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ ++L++G++E +R + +PE + YPGG
Sbjct: 186 PFSLTTLIWIEVLVVGYIEFQRNSEL-DPEKRI----------------------YPGG- 221
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+FDPL LA D EKLD LK+AEIKH+RLAMVA LIF +A GK P+ L
Sbjct: 222 YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
>gi|15225630|ref|NP_181539.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
gi|38503231|sp|Q9S7W1.1|CB4C_ARATH RecName: Full=Chlorophyll a-b binding protein CP29.3,
chloroplastic; AltName: Full=LHCB4.3; AltName:
Full=LHCII protein 4.3; Flags: Precursor
gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3 protein [Arabidopsis thaliana]
gi|17979325|gb|AAL49888.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|20465761|gb|AAM20369.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330254684|gb|AEC09778.1| chlorophyll a-b binding protein CP29.3 [Arabidopsis thaliana]
Length = 276
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 83/239 (34%), Positives = 109/239 (45%), Gaps = 85/239 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDGS+ GD GFDP GLGK +L++
Sbjct: 66 PEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSEIKPTPF 125
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIA 133
+RE ELIHGRWAM +G +A +GI W +AG G
Sbjct: 126 QPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPL 185
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ ++L++G++E +R + +PE + YPGG
Sbjct: 186 PFSLTTLIWIEVLVVGYIEFQRNSEL-DPEKRI----------------------YPGG- 221
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+FDPL LA D EKLD LK+AEIKH+RLAMVA LIF +A GK P+ L
Sbjct: 222 YFDPLGLAA---------DPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271
>gi|219362417|ref|NP_001136606.1| uncharacterized protein LOC100216729 [Zea mays]
gi|194696340|gb|ACF82254.1| unknown [Zea mays]
Length = 291
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 109/238 (45%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P++LDGSL GDYGFDP GLGK +L++
Sbjct: 63 VAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSDVKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GA 131
+RE ELIHGRWAM A +G + +G+ W +AG G
Sbjct: 123 PLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PF+ +L+ ++L++G++E +R + +PE + YPG
Sbjct: 183 PLPFTISTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
G +FDPL LA D EK +RL++AEIKHARLAMVA L F + A GK PL
Sbjct: 220 GSYFDPLALAA---------DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>gi|145343493|ref|XP_001416356.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144576581|gb|ABO94649.1| Photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 203
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/189 (42%), Positives = 94/189 (49%), Gaps = 28/189 (14%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVG-----IFVGQAWSG 119
P L LPGDYGFDPL LGKDP LKWY +AEL HGRWAM V G I S
Sbjct: 9 PAHLKNELPGDYGFDPLELGKDPEDLKWYVQAELQHGRWAMLGVAGAAAPEILTNMGISN 68
Query: 120 IP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
+P W EA + G + +L Q+L+M W E +RW D P S S E TP+S
Sbjct: 69 LPNWHEAPSYDGYFTDAT--TLFWVQMLMMNWAEVRRWQDIRKPGSVS-EDPTPFS---- 121
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA---ML 235
N G GYPGG FDPL A L LK EI + RLAMVA ++
Sbjct: 122 NAKLPAGVVGYPGG-IFDPLGYA-----------KGDLKTLKAKEIANGRLAMVAFAGIM 169
Query: 236 IFYFEAGQG 244
+ Y G G
Sbjct: 170 VQYDHTGVG 178
>gi|118489398|gb|ABK96503.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 283
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 117/264 (44%), Gaps = 92/264 (34%)
Query: 38 KKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW----- 92
KKS+ +P + W P K PE+LDGSL GDYGFDP GLG+ +L++
Sbjct: 40 KKSI--KTIPDRPLWYPGAKA------PEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSL 91
Query: 93 --------------------------------------YREAELIHGRWAMAAVVGIFVG 114
+RE ELIHGRWAM A +G
Sbjct: 92 DQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSV 151
Query: 115 QAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
+ +G+ W +AG + G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 152 EWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRL 210
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
YPGG FFDPL LA D EK L++AEIKH
Sbjct: 211 ----------------------YPGGNFFDPLGLAA---------DPEKKATLQLAEIKH 239
Query: 227 ARLAMVAMLIFYFEA-GQGKTPLG 249
ARLAMVA L F +A GK PL
Sbjct: 240 ARLAMVAFLGFAVQAWVTGKGPLN 263
>gi|346987811|gb|AEO51756.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 286
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 109/249 (43%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 55 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPVEYLQYDLDSLDQNLAKNMAGDIIG 108
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 109 TRVESSEVKSTPFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKV 168
Query: 129 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
G PFS +L+ ++LL+G++E +R + +PE +
Sbjct: 169 ELVEGSSYLGQPLPFSISTLIWIEVLLIGYIEFQRNAE-LDPEKRL-------------- 213
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGGKFFDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 214 --------YPGGKFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVGFLGFAVQ 256
Query: 241 AG-QGKTPL 248
A GK PL
Sbjct: 257 AAVTGKGPL 265
>gi|224140409|ref|XP_002323575.1| predicted protein [Populus trichocarpa]
gi|222868205|gb|EEF05336.1| predicted protein [Populus trichocarpa]
Length = 283
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 117/264 (44%), Gaps = 92/264 (34%)
Query: 38 KKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW----- 92
KKS+ +P + W P K PE+LDGSL GDYGFDP GLG+ +L++
Sbjct: 40 KKSI--KTIPDRPLWYPGAKA------PEYLDGSLVGDYGFDPFGLGRPAEYLQFELDSL 91
Query: 93 --------------------------------------YREAELIHGRWAMAAVVGIFVG 114
+RE ELIHGRWAM A +G
Sbjct: 92 DQNLAKNLAGDIIGTRTEVSDVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSV 151
Query: 115 QAWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
+ +G+ W +AG + G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 152 EWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLILIEVLVIGYIEFQRNAE-LDPEKRL 210
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
YPGG FFDPL LA D EK L++AEIKH
Sbjct: 211 ----------------------YPGGNFFDPLGLAA---------DPEKKATLQLAEIKH 239
Query: 227 ARLAMVAMLIFYFEA-GQGKTPLG 249
ARLAMVA L F +A GK PL
Sbjct: 240 ARLAMVAFLGFAVQAWVTGKGPLN 263
>gi|297733963|emb|CBI15210.3| unnamed protein product [Vitis vinifera]
Length = 249
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 106/210 (50%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +LDGSLPGD GFDPLGL +DP LKWY +AEL++ RWAM V
Sbjct: 50 KGEWLPG------LSSPSYLDGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGV 103
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ I W++AG A S +L + +L +VE +RW D NP
Sbjct: 104 AGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 160
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + +N++ E GYPGG F+PL A T + K
Sbjct: 161 GSVNQD------PIFKNYSLPPNEVGYPGG-IFNPLNFAPT-------------EEAKEK 200
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
E+ + RLAM+A L F + GK P L
Sbjct: 201 ELANGRLAMLAFLGFIVQHNVTGKGPFDNL 230
>gi|159478202|ref|XP_001697193.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
gi|60391855|sp|Q93WD2.3|CB29_CHLRE RecName: Full=Chlorophyll a-b binding protein CP29; AltName:
Full=Lhcbm4
gi|15430560|dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|15430568|dbj|BAB64419.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii]
gi|27542567|gb|AAO16494.1| CP29-like protein [Chlamydomonas reinhardtii]
gi|158274667|gb|EDP00448.1| chlorophyll a-b binding protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 280
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 107/253 (42%), Gaps = 91/253 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF---------------------- 89
W+P N PEWLDGSLPGD GFDPLGL K F
Sbjct: 53 WLP------NTTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEA 106
Query: 90 -----------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 126
L +RE ELIHGRWAM A +G V +A +G+ W EAG
Sbjct: 107 IVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAG 166
Query: 127 -------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
+ G PFS L+ +++L+G E R + NPE +
Sbjct: 167 KVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSE-TNPEKRC------------- 212
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG FDPL LA D E+ RLK AEIKHARLAMV+ +
Sbjct: 213 ---------YPGG-VFDPLKLASE--------DEERAFRLKTAEIKHARLAMVSFFGYGV 254
Query: 240 EA-GQGKTPLGAL 251
+A G+ LG+L
Sbjct: 255 QALSTGEGALGSL 267
>gi|297829418|ref|XP_002882591.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
gi|297328431|gb|EFH58850.1| LHCB4.2 [Arabidopsis lyrata subsp. lyrata]
Length = 287
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 112/249 (44%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K +PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 55 WFPGAK------SPEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIG 108
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 109 TRTEAVDPKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGAITVEWLTGVTWQDAGKV 168
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R N E S
Sbjct: 169 ELVDGSSYLGQPLPFSISTLIWIEVLVVGYIEFQR-----NAELDS-------------- 209
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
++ YPGGKFFDPL LA D EK +L++AEIKHARLAMV L F +
Sbjct: 210 ----EKRLYPGGKFFDPLGLAS---------DPEKKAQLQLAEIKHARLAMVGFLGFAVQ 256
Query: 241 -AGQGKTPL 248
A GK PL
Sbjct: 257 AAATGKGPL 265
>gi|115472753|ref|NP_001059975.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|3075488|gb|AAC14566.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|34394009|dbj|BAC84033.1| chlorophyll a/b-binding protein [Oryza sativa Japonica Group]
gi|113611511|dbj|BAF21889.1| Os07g0558400 [Oryza sativa Japonica Group]
gi|125558786|gb|EAZ04322.1| hypothetical protein OsI_26463 [Oryza sativa Indica Group]
gi|215704418|dbj|BAG93852.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737393|dbj|BAG96322.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737709|dbj|BAG96839.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764955|dbj|BAG86652.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767447|dbj|BAG99675.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 290
Score = 108 bits (269), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 110/239 (46%), Gaps = 84/239 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P++LDGSL GDYGFDP GLGK +L++
Sbjct: 62 VAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNNAGEIIGTRFETGEVKST 121
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 122 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 181
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R + +PE + YPG
Sbjct: 182 PLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPG 218
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLG 249
G +FDPL LA D EK +RL++AEIKHARLAMVA L F + A GK PL
Sbjct: 219 GSYFDPLGLAS---------DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 268
>gi|217073418|gb|ACJ85068.1| unknown [Medicago truncatula]
gi|388507876|gb|AFK42004.1| unknown [Medicago truncatula]
Length = 253
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 122/249 (48%), Gaps = 41/249 (16%)
Query: 12 GLGSSFING--GKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLD 69
GL S F+ G GK ++ + + S V A K W+P L +P +L
Sbjct: 17 GLKSRFLTGSSGKLNREVAIRPMGCSPSASFKVEAK---KGEWLPG------LASPGYLT 67
Query: 70 GSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWF 123
GSLPGD GFDPLGL +DP LKW+ +AEL++GRWAM V G+ + + ++ I W+
Sbjct: 68 GSLPGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTNIGIINVPKWY 127
Query: 124 EAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
+AG + S +L + +L +VE +RW D NP S + + + ++
Sbjct: 128 DAGKEEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLP 178
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG- 242
GE GYPGG F+PL A T++ K EI + RLAM+A L F +
Sbjct: 179 KGEVGYPGG-IFNPLNFAPTLE-------------AKEKEIANGRLAMLAFLGFIIQHNV 224
Query: 243 QGKTPLGAL 251
GK P L
Sbjct: 225 TGKGPFDNL 233
>gi|162458005|ref|NP_001105502.1| photosystem II subunit29 [Zea mays]
gi|2326947|emb|CAA90681.1| Chlorophyll a/b-binding protein CP29 precursor [Zea mays]
gi|195639374|gb|ACG39155.1| hypothetical protein [Zea mays]
gi|414887094|tpg|DAA63108.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 1 [Zea
mays]
gi|414887095|tpg|DAA63109.1| TPA: chlorophyll a/b-binding protein CP29 Precursor isoform 2 [Zea
mays]
Length = 291
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/238 (33%), Positives = 109/238 (45%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P++LDGSL GDYGFDP GLGK +L++
Sbjct: 63 VAPDYLDGSLVGDYGFDPFGLGKPVEYLQFELDSLDQNLAKNEAGGIIGTRFESSEVKST 122
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GA 131
+RE ELIHGRWAM A +G + +G+ W +AG G
Sbjct: 123 PLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 182
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R + +PE + YPG
Sbjct: 183 PLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPG 219
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
G +FDPL LA D EK +RL++AEIKHARLAMVA L F + A GK PL
Sbjct: 220 GSYFDPLGLAA---------DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 268
>gi|4689382|gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 120/282 (42%), Gaps = 90/282 (31%)
Query: 19 NGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGF 78
+G + QA ++ ++ K V + W P K PEWLDGSL GDYGF
Sbjct: 24 SGSGRIQARFGFGSKKKAAPKKVSKGPSTDRPLWYPGAKA------PEWLDGSLVGDYGF 77
Query: 79 DPLGLGKDPAFLKW-------------------------------------------YRE 95
DP GLGK +L++ +RE
Sbjct: 78 DPFGLGKPAEYLQFELDSLDQNLAKNEAGIIIGTRTEVADVKSTPFQPYSEVFGLQRFRE 137
Query: 96 AELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLL 147
ELIHGRWAM A +G + +G+ W +AG G PFS +L+ ++L+
Sbjct: 138 CELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIEVLV 197
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+G++E +R + +PE + YPGG +FDPL LA
Sbjct: 198 IGYIEFQRNAE-LDPEKRL----------------------YPGGSYFDPLGLAS----- 229
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
D EK L++AEIKHARLAMV L F + A GK PL
Sbjct: 230 ----DPEKKATLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 267
>gi|100801744|emb|CAK24966.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 251
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 113/225 (50%), Gaps = 38/225 (16%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+SS S V A K W+P L +P++LDGSLPGD GFDPLGL +DP LKW+
Sbjct: 40 TSSSYNSFKVEA--KKGQWLPG------LASPDYLDGSLPGDNGFDPLGLAEDPENLKWF 91
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL++GRWAM V G+ + + ++ I W++AG S +L + +L
Sbjct: 92 IQAELVNGRWAMLGVAGMLLPEVFTSIGILNVPKWYDAGKSEYFA---SSSTLFVIEFIL 148
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP S + + ++++ + GYPGG F+PL A T
Sbjct: 149 FHYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPNKCGYPGG-IFNPLNFAPT---- 197
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ K E+ + RLAM+A L F + GK P L
Sbjct: 198 ---------EEAKEKELANGRLAMLAFLGFIVQHNVTGKGPFDNL 233
>gi|255547367|ref|XP_002514741.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223546345|gb|EEF47847.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 251
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 119/244 (48%), Gaps = 38/244 (15%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S F++G ++SS S V A K W+P L +P +L+GSLPG
Sbjct: 20 SRFLSGSPSKLNREVAFKPMSSSPASFKVEA--KKGEWLPG------LPSPAYLNGSLPG 71
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAD 128
D GFDPLGL +DP LKW+ +AEL++GRWAM V G+ + + ++ I W++AG +
Sbjct: 72 DNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPKWYDAGKE 131
Query: 129 PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
S +L + +L +VE +RW D NP S + + + ++ E G
Sbjct: 132 EYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVG 182
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 247
YPGG F+PL A T++ K E+ + RLAM+A L F + GK P
Sbjct: 183 YPGG-IFNPLNFAPTLE-------------AKEKELANGRLAMLAFLGFVIQHNVTGKGP 228
Query: 248 LGAL 251
L
Sbjct: 229 FDNL 232
>gi|312281687|dbj|BAJ33709.1| unnamed protein product [Thellungiella halophila]
Length = 276
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 110/249 (44%), Gaps = 91/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PEWLDGS+ GD GFDP GLGK +L++
Sbjct: 59 WFPGAK------PPEWLDGSMIGDRGFDPFGLGKPAEYLQYDFDGLDQNLAKNVAGEVIG 112
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+RE ELIHGRWAM +G +A +GI W +AG
Sbjct: 113 IIQDSSEINPTPFQPYTEVFGIQRFRECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKV 172
Query: 129 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 173 ELVEGSSYLGQPLPFSLTTLIWIEVLVVGYIEFQRNAEL-DPEKRI-------------- 217
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG +FDPL L D EKLD LK+AEIKH+RLAMVA LIF +
Sbjct: 218 --------YPGG-YFDPLGLGS---------DPEKLDTLKLAEIKHSRLAMVAFLIFGLQ 259
Query: 241 AG-QGKTPL 248
A GK P+
Sbjct: 260 AAFTGKGPI 268
>gi|157965839|gb|ABW06956.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 468
Score = 107 bits (267), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 98/197 (49%), Gaps = 47/197 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +L G LPGDYG+D GLG DP L+ YREAELIHGRWAM VG F+ + +
Sbjct: 259 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 318
Query: 119 -GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
G P WF+AGA P I S ++L TQ+LLMG VE+ R
Sbjct: 319 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR--------- 369
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
TA ++ YPGG FDPL LA D + LKV EI
Sbjct: 370 --------AGNTAPGQFGEDLDRLYPGGP-FDPLGLAD---------DPDTFAELKVKEI 411
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAMVAML FY +A
Sbjct: 412 KNGRLAMVAMLGFYAQA 428
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/210 (39%), Positives = 103/210 (49%), Gaps = 49/210 (23%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS---G 119
+ P +L+G LPGDYG+D GLG DP L+ YREAELIHGRWAM +G+ + S
Sbjct: 14 LTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAMLGALGVVFPEYLSRNFD 73
Query: 120 IP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
IP WF+AGA D + S +LGTQ+LLMG E+ R +
Sbjct: 74 IPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVLLMGAAEAYRTGNGLG- 132
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
NF + YPGG FDPL LA D + L LKV
Sbjct: 133 ----------------NFGKDL-DSLYPGGP-FDPLGLAN---------DPDTLAELKVK 165
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM AM FY +A G++PL L
Sbjct: 166 EIKNGRLAMFAMFGFYVQAIVTGESPLENL 195
>gi|413922346|gb|AFW62278.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 244
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 124/258 (48%), Gaps = 39/258 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
MA+ T+ A + L S + + L T + +++S+ A K W+P
Sbjct: 1 MASVTARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEA---KGEWLPG----- 52
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-- 118
L +P +LDGSLPGD GFDPLGL +DP L+WY +AEL++GRWAM V G+ + + +
Sbjct: 53 -LPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKA 111
Query: 119 ----GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
W++AG S +L + +L +VE +RW D NP S + +
Sbjct: 112 GLINAPQWYDAGKSEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------ 162
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
++++ E GYP G F+PL A T++ K E+ + RLAM+A
Sbjct: 163 PIFKSYSLPPHECGYP-GSVFNPLNFAPTLE-------------AKEKELANGRLAMLAF 208
Query: 235 LIFYFEAG-QGKTPLGAL 251
L F + GK P L
Sbjct: 209 LAFLIQHNVTGKGPFDNL 226
>gi|145078806|tpg|DAA05885.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Euglena gracilis]
Length = 695
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/197 (41%), Positives = 98/197 (49%), Gaps = 47/197 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +L G LPGDYG+D GLG DP L+ YREAELIHGRWAM VG F+ + +
Sbjct: 2 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 61
Query: 119 -GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
G P WF+AGA P I S ++L TQ+LLMG VE+ R
Sbjct: 62 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR--------- 112
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
TA ++ YPGG FDPL LA D + LKV EI
Sbjct: 113 --------AGNTAPGQFGEDLDRLYPGGP-FDPLGLAD---------DPDTFAELKVKEI 154
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAMVAML FY +A
Sbjct: 155 KNGRLAMVAMLGFYAQA 171
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/197 (41%), Positives = 98/197 (49%), Gaps = 47/197 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +L G LPGDYG+D GLG DP L+ YREAELIHGRWAM VG F+ + +
Sbjct: 486 PSYLTGELPGDYGWDTAGLGADPFTLQRYREAELIHGRWAMLGAVGCFLPEYLNRFFGVQ 545
Query: 119 -GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
G P WF+AGA P I S ++L TQ+LLMG VE+ R
Sbjct: 546 FGEPIWFKAGAQIFSAEGLNYFGQPALIHAKSLLAILATQVLLMGAVEAYR--------- 596
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
TA ++ YPGG FDPL LA D + LKV EI
Sbjct: 597 --------AGNTAPGQFGEDLDRLYPGGP-FDPLGLAD---------DPDTFAELKVKEI 638
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAM+AML FY +A
Sbjct: 639 KNGRLAMMAMLGFYAQA 655
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 85/226 (37%), Positives = 108/226 (47%), Gaps = 52/226 (23%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + + P +L+G LPGDYG+D GLG DP L+ YREAELIHGRWAM
Sbjct: 228 PDRSKWLGPYS---DALTPPYLNGELPGDYGWDSAGLGADPITLQRYREAELIHGRWAML 284
Query: 107 AVVGIFVGQAWS---GIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLL 146
+G+ + S IP WF+AGA D + S +LGTQ+L
Sbjct: 285 GALGVVFPEYLSRNFDIPIAEPVWFKAGAQIFSEGGLDYLGDARLVHAQSILLILGTQVL 344
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LMG E+ R + NF + YPGG FDPL LA
Sbjct: 345 LMGAAEAYRTGNGLG-----------------NFGKDL-DSLYPGGP-FDPLGLAN---- 381
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
D + L LKV EIK+ RLAM AM FY +A G++PL L
Sbjct: 382 -----DPDTLAELKVKEIKNGRLAMFAMFGFYVQAIVTGESPLENL 422
>gi|308800788|ref|XP_003075175.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029283|gb|AAY27540.1| chloroplast light-harvesting complex I protein precursor Lhca4
[Ostreococcus tauri]
gi|116061729|emb|CAL52447.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 236
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 82/226 (36%), Positives = 108/226 (47%), Gaps = 36/226 (15%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDP 87
L S++SV V A + W P + P+ L G LPGDYGFDPL LGK+P
Sbjct: 13 LRAPKTTKRSQRSVSVRA-STQPMWFPGMDA------PQHLKGELPGDYGFDPLNLGKEP 65
Query: 88 AFLKWYREAELIHGRWAMAAVVG-----IFVGQAWSGIP-WFEAGADPGAIAPFSFGSLL 141
L+WY +AEL HGRWAM V G I S +P W +A G + +L
Sbjct: 66 KDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDAT--TLF 123
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
Q+L+M W E +RW D P S + + A ++ +G GYPGG FDPL A
Sbjct: 124 WVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKL------PSGIVGYPGG-IFDPLGYA 176
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA---MLIFYFEAGQG 244
L++LK EI + RLAMVA +++ Y G G
Sbjct: 177 -----------KGDLNKLKAKEIANGRLAMVAFAGIMVQYDHTGVG 211
>gi|242050544|ref|XP_002463016.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
gi|241926393|gb|EER99537.1| hypothetical protein SORBIDRAFT_02g036260 [Sorghum bicolor]
Length = 288
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 110/238 (46%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P++LDG+L GDYGFDP GLGK +L++
Sbjct: 60 VAPDYLDGTLVGDYGFDPFGLGKPVEYLQFDLDSLDQNLAKNEPGVVIGTRFESSDVKST 119
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 120 PLQPYSEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 179
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++L++G++E +R + +PE + YPG
Sbjct: 180 PLPFSISTLIWIEVLVIGYIEFQRNAE-LDPEKRL----------------------YPG 216
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
G +FDPL LA D EK +RL++AEIKHARLAMVA L F + A GK PL
Sbjct: 217 GSYFDPLGLAA---------DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPL 265
>gi|356568441|ref|XP_003552419.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 278
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 108/239 (45%), Gaps = 84/239 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDGS+ GD GFDP G K +L++
Sbjct: 67 PEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNVAGDVIGTRVEVADVKPTPF 126
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIA 133
+RE ELIHGRWAM +G V +A +G+ W +AG + G
Sbjct: 127 QPYSEVFGIQRFRECELIHGRWAMLGALGALVVEALTGVAWQDAGKVELVEGSSYLGLPL 186
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ +++++G++E +R + +PE + YPGG+
Sbjct: 187 PFSLTTLIWIEVIVIGYIEFQRNAE-LDPEKRL----------------------YPGGR 223
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
FFDPL LA D E+ RL++AEIKH+RLAMV LIF +A GK P+ L
Sbjct: 224 FFDPLGLAN---------DPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 273
>gi|357122377|ref|XP_003562892.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Brachypodium distachyon]
Length = 288
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/264 (31%), Positives = 115/264 (43%), Gaps = 90/264 (34%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW---- 92
+KK+ + W P + PE+LDG+L GDYGFDP GLGK +L++
Sbjct: 42 AKKASRAPPTTDRPLWFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAEYLQYDPDS 95
Query: 93 ---------------------------------------YREAELIHGRWAMAAVVGIFV 113
+RE ELIHGRWAM A +G
Sbjct: 96 LDQNLAQNLAGEVIGTRFEDADIKSTPLQPYAEVFGLQRFRECELIHGRWAMLATLGALT 155
Query: 114 GQAWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ +G+ W +AG G PF+ +L+ ++L++G++E +R + +PE +
Sbjct: 156 VEWLTGVTWQDAGKVELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPEKR 214
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
YPGG +FDPL LA D EK +RL++AEIK
Sbjct: 215 L----------------------YPGGSYFDPLGLAA---------DPEKKERLQLAEIK 243
Query: 226 HARLAMVAMLIFYFE-AGQGKTPL 248
HARLAMV L F + A GK PL
Sbjct: 244 HARLAMVGFLGFAVQAAATGKGPL 267
>gi|218199895|gb|EEC82322.1| hypothetical protein OsI_26601 [Oryza sativa Indica Group]
Length = 432
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/155 (40%), Positives = 81/155 (52%), Gaps = 16/155 (10%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVV-AALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
SSF+ G +S LL +S++ S V AA P + W P P WLDGSLP
Sbjct: 23 SSFLGGAGRSGRLLLRQAESSSARASFAVRAAAPDRPIWFPGST------PPPWLDGSLP 76
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGA 127
GD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 77 GDFGFDPLGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGE 136
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
+L +L+L+GW E +RW D P
Sbjct: 137 QQYFT---DTTTLFIIELILIGWAEGRRWADIIKP 168
>gi|224090986|ref|XP_002309134.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
gi|118489077|gb|ABK96345.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222855110|gb|EEE92657.1| light-harvesting complex II protein Lhcb4 [Populus trichocarpa]
Length = 285
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/262 (32%), Positives = 115/262 (43%), Gaps = 90/262 (34%)
Query: 39 KSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------ 92
K + + P + W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 41 KKSIKPSTPDRPLWYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLD 94
Query: 93 -------------------------------------YREAELIHGRWAMAAVVGIFVGQ 115
+RE ELIHGRWAM A +G +
Sbjct: 95 QNLAKNLAGDIIGTRTEFADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALSVE 154
Query: 116 AWSGIPWFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+G+ W +AG + G PFS +L+ + +++G++E +R + +PE +
Sbjct: 155 WLTGVTWQDAGKVELVEGSSYLGQPLPFSITALIWIEAVIIGYIEFQRNAE-LDPEKRL- 212
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
YPGG+FFDPL LA D EK L++AEIKHA
Sbjct: 213 ---------------------YPGGQFFDPLGLAS---------DPEKKATLQLAEIKHA 242
Query: 228 RLAMVAMLIFYFEA-GQGKTPL 248
RLAMVA L F +A GK PL
Sbjct: 243 RLAMVAFLGFAVQAWVTGKGPL 264
>gi|33438474|emb|CAE30280.1| chlorophyll a /b binding protein [Beta vulgaris]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 124/264 (46%), Gaps = 44/264 (16%)
Query: 1 MAAATSGAVLNGL-----GSSFINGGKKSQALLAGTNR-VTSSKKSVVVAALPPKKSWIP 54
MAA T+ A + G S F+ G G TSS S+ V A K W+P
Sbjct: 1 MAAVTTQASIAGFRPCASKSRFLTGAPGKLNKECGVRLPSTSSTNSLKVEA--KKGEWLP 58
Query: 55 AVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 114
L +P +L+GSLPGD GFDPL L +DP LKW+ +AEL++GRWAM V G+ +
Sbjct: 59 G------LASPAYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWAMLGVAGMLLP 112
Query: 115 QAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+ ++ I W++AG S +L + +L +VE +RW D NP S + +
Sbjct: 113 EVFTQIGIINVPKWYDAGKQEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD 169
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ ++ E GYPGG F+PL A T + K E+ + R
Sbjct: 170 ------PIFKQYSLPPNEVGYPGG-IFNPLNFAPTAE-------------AKEKELANGR 209
Query: 229 LAMVAMLIFYFEAG-QGKTPLGAL 251
LAM+A L F + GK P L
Sbjct: 210 LAMLAFLGFIVQHNVTGKGPFDNL 233
>gi|110377766|gb|ABG73415.1| chloroplast pigment-binding protein CP29 [Nicotiana tabacum]
Length = 285
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 113/256 (44%), Gaps = 91/256 (35%)
Query: 46 LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------- 92
+P + W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 45 IPDRPLWYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNL 98
Query: 93 ------------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPW 122
+RE ELIHGRWAM A +G + +GI W
Sbjct: 99 AGDVIGTRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGITW 158
Query: 123 FEAG--------ADPGAIAPFSFGSLLGTQLLLMGW-VESKRWVDFFNPESQSVEWATPW 173
+AG + G PFS +L+ ++L++G+ VE +R + +PE +
Sbjct: 159 QDAGKVELVEGSSYLGQPLPFSITTLIWIEVLVIGYIVEFQRNAE-LDPEKRL------- 210
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
YPGG FFDPL LA D EK L++AEIKHARLAMVA
Sbjct: 211 ---------------YPGGSFFDPLGLAA---------DPEKKATLQLAEIKHARLAMVA 246
Query: 234 MLIFYFE-AGQGKTPL 248
L F + A GK PL
Sbjct: 247 FLGFAVQAAATGKGPL 262
>gi|160713961|gb|ABX47016.1| chloroplast chlorophyll a/b binding protein cab-PhE7 [Phyllostachys
edulis]
Length = 287
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 109/238 (45%), Gaps = 84/238 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P++LDGSL GDYGFDP GLGK +L++
Sbjct: 59 VAPDYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNDAGDIIGTRFEPGEVKST 118
Query: 93 -------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGA 131
+RE ELIHGRWAM A +G + +G+ W +AG + G
Sbjct: 119 PFQPYTEVFGLQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQ 178
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
PFS +L+ ++LL+G++E +R N E S ++ YPG
Sbjct: 179 PLPFSMTTLIWIEVLLIGYIEFQR-----NAELDS------------------EKRLYPG 215
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPL 248
G +FDPL LA D EK +RL++AEIKHARLAMV L F + A GK PL
Sbjct: 216 GSYFDPLGLAS---------DPEKKERLQLAEIKHARLAMVGFLGFAVQAAATGKGPL 264
>gi|87313171|gb|ABD37882.1| light-harvesting chlorophyll-a/b binding protein Lhca4.2
[Mesostigma viride]
gi|145079732|tpg|DAA05926.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca5 [Mesostigma viride]
Length = 246
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/210 (36%), Positives = 103/210 (49%), Gaps = 35/210 (16%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 111
W P + P +LDGSLPGD+G+DPL L P LKW +AEL + RWAM V G+
Sbjct: 46 WCPGIPA------PSYLDGSLPGDFGYDPLSLSNSPDKLKWMVQAELQNARWAMLGVAGM 99
Query: 112 FVGQAWSGI------PWFEAG--ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
GI W++A AD + P + SL Q++LMG+VE++RW D P
Sbjct: 100 LSVDLLQGILPDNVPQWYDAPLLAD---VYPAEWKSLFIIQMILMGFVEARRWADINTPG 156
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
S +V+ N +G GYPGG FDPL + L+ K E
Sbjct: 157 SANVD-----PVFNNNKLPDSGTPGYPGG-MFDPLGFS-----------KGNLEESKWKE 199
Query: 224 IKHARLAMVAML-IFYFEAGQGKTPLGALG 252
+++ RLAMVA L +F GK+PL L
Sbjct: 200 LRNGRLAMVASLGMFIQYDATGKSPLTNLA 229
>gi|75266203|sp|Q9SQL2.1|CB24_PEA RecName: Full=Chlorophyll a-b binding protein P4, chloroplastic;
AltName: Full=LHCI type III CAB-P4; Flags: Precursor
gi|6470348|gb|AAF13731.1| PSI light-harvesting antenna chlorophyll a/b-binding protein [Pisum
sativum]
Length = 252
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 116/247 (46%), Gaps = 37/247 (14%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
GL S F+ GG + R S K W+P L +P +L GS
Sbjct: 17 GLKSRFL-GGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPG------LASPGYLTGS 69
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + ++ I W+ A
Sbjct: 70 LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA 129
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G + S +L + +L +VE +RW D NP S + + + ++ G
Sbjct: 130 GKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAG 180
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QG 244
E GYPGG F+PL A T++ K EI + RLAM+A L F + G
Sbjct: 181 EVGYPGG-IFNPLNFAPTLEA-------------KEKEIANGRLAMLAFLGFIIQHNVTG 226
Query: 245 KTPLGAL 251
K P L
Sbjct: 227 KGPFDNL 233
>gi|30692874|ref|NP_190331.3| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
gi|115385|sp|P27521.1|CA4_ARATH RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCI type III CAB-4; Flags: Precursor
gi|166646|gb|AAA32760.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING PROTEIN 4 PRECURSOR homolog [Arabidopsis
thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding protein 4 precursor homolog [Arabidopsis
thaliana]
gi|332644764|gb|AEE78285.1| chlorophyll a-b binding protein 4 [Arabidopsis thaliana]
Length = 251
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 36/225 (16%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+ SS K+ K W+P L +P++L GSL GD GFDPLGL +DP LKW+
Sbjct: 39 IGSSAKTSSFKVEAKKGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWF 92
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL++GRWAM V G+ + + ++ I W++AG + S +L + +L
Sbjct: 93 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFIL 149
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP S + + + ++ GE GYPGG F+PL A T
Sbjct: 150 FHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPT---- 198
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + GK P L
Sbjct: 199 ---------QEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENL 234
>gi|255085312|ref|XP_002505087.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226520356|gb|ACO66345.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 242
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 73/214 (34%), Positives = 105/214 (49%), Gaps = 30/214 (14%)
Query: 35 TSSKKSVVVAALPPKK-SWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+ ++ SV V A+ + +W+P P LDG+LP DYGFDPL LG DP LKW+
Sbjct: 27 SKARASVRVGAVAAARPTWLPGSPA------PAHLDGTLPCDYGFDPLNLGADPENLKWF 80
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL+H RWAM + G+ + + I W +AG G G L Q+ +
Sbjct: 81 VQAELMHCRWAMLGLAGMVGPELLTKIGMADLPNWIDAGKWDGYW--LGAGPLFFVQMAM 138
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
M W E +RW D P + + + T N + + GYP G FDP+
Sbjct: 139 MNWAEVRRWQDMKAPGTMNED-----PLTGANKGDTNTDVGYPKG-LFDPMG-------- 184
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
Y D +K + LK EI + RLAMVA++ + +A
Sbjct: 185 -YAKDPKKAEELKRKEIANGRLAMVAIVGCFAQA 217
>gi|308808233|ref|XP_003081427.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029293|gb|AAY27545.1| chloroplast light-harvesting complex I protein precursor Lhca2
[Ostreococcus tauri]
gi|116059889|emb|CAL55596.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 242
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/235 (35%), Positives = 106/235 (45%), Gaps = 43/235 (18%)
Query: 25 QALLAGTNRVTSSKKSVVVAALP--PKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLG 82
+ L A +S++SVVV+A + W P G P LDGSLPGD+GFDPL
Sbjct: 13 RRLKARATTTRASRRSVVVSAEAGAERPVWYP-----GKAPAPH-LDGSLPGDFGFDPLS 66
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFS 136
L DP KW +AEL H RWAM V G + + I W +AG +
Sbjct: 67 LSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGT-------YQ 119
Query: 137 F----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGG 192
+ G L Q+ + W E +RW D NP S + + N + + GYPGG
Sbjct: 120 YWAPAGPLFFIQMAMFNWAEVRRWQDMKNPGSMNTD-----PLFGYNSNDTNTDVGYPGG 174
Query: 193 KFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF---YFEAGQG 244
FD L Y D K LK+ EIK+ RLAMVA L Y + GQG
Sbjct: 175 -LFDKLG---------YAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQG 219
>gi|116786785|gb|ABK24236.1| unknown [Picea sitchensis]
gi|116790888|gb|ABK25778.1| unknown [Picea sitchensis]
gi|224285609|gb|ACN40523.1| unknown [Picea sitchensis]
Length = 251
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 125/260 (48%), Gaps = 37/260 (14%)
Query: 1 MAAATSGAVL-----NGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPA 55
MA+ T+ A L + S F+ G S+ LA R S+ + K W+P
Sbjct: 1 MASVTTQATLGVSCRSVCRSGFLTGSSVSR--LARRVRPGSNPAPARSFKVEAKGEWLPG 58
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
L +P +L+GSLPGD GFDPLGL +DP LKWY +AEL++GRWAM V G+ + +
Sbjct: 59 ------LSSPTYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPE 112
Query: 116 AWSGIPWFEAGA--DPGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+ + + D G + F S +L + +L +VE +RW D P S + +
Sbjct: 113 VLTSFGFIDVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQD---- 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+N++ E GYPGG F+PL + +++ K E+ + RLAM+
Sbjct: 169 --PVFKNYSLPPNEVGYPGG-IFNPLNFSPSME-------------AKEKELANGRLAML 212
Query: 233 AMLIFYFEAG-QGKTPLGAL 251
A L F + GK P L
Sbjct: 213 AFLGFVVQHNVTGKGPFENL 232
>gi|224285766|gb|ACN40598.1| unknown [Picea sitchensis]
Length = 251
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 84/260 (32%), Positives = 125/260 (48%), Gaps = 37/260 (14%)
Query: 1 MAAATSGAVL-----NGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPA 55
MA+ T+ A L + S F+ G S+ LA R S+ + K W+P
Sbjct: 1 MASVTTQATLGVSCRSVCRSGFLTGSSVSR--LARRVRPGSNPAPARSFKVEAKGEWLPG 58
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
L +P +L+GSLPGD GFDPLGL +DP LKWY +AEL++GRWAM V G+ + +
Sbjct: 59 ------LSSPTYLNGSLPGDNGFDPLGLAEDPDSLKWYVQAELVNGRWAMLGVAGMLIPE 112
Query: 116 AWSGIPWFEAGA--DPGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+ + + D G + F S +L + +L +VE +RW D P S + +
Sbjct: 113 VLTSFGFIDVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQD---- 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+N++ E GYPGG F+PL + +++ K E+ + RLAM+
Sbjct: 169 --PVFKNYSLPPNEVGYPGG-IFNPLNFSPSME-------------AKEKELANGRLAML 212
Query: 233 AMLIFYFEAG-QGKTPLGAL 251
A L F + GK P L
Sbjct: 213 AFLGFVVQHNVTGKGPFENL 232
>gi|356503628|ref|XP_003520609.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 109/249 (43%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 57 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 110
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 111 TRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 170
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 171 ELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRL-------------- 215
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG +FDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 216 --------YPGGSYFDPLGLAS---------DPEKKATLQLAEIKHARLAMVGFLGFAVQ 258
Query: 241 -AGQGKTPL 248
A GK PL
Sbjct: 259 AAATGKGPL 267
>gi|356496185|ref|XP_003516950.1| PREDICTED: chlorophyll a-b binding protein CP29.2,
chloroplastic-like [Glycine max]
Length = 290
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 109/249 (43%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 57 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 110
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 111 TRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 170
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R + +PE +
Sbjct: 171 ELVEGSSYLGQPLPFSITTLIWIEVLVIGYIEFQRNAE-LDPEKRL-------------- 215
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG +FDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 216 --------YPGGSYFDPLGLAS---------DPEKKATLQLAEIKHARLAMVGFLGFAVQ 258
Query: 241 -AGQGKTPL 248
A GK PL
Sbjct: 259 AAATGKGPL 267
>gi|118489040|gb|ABK96327.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S F+ G + SS S V A K W+P L +P +L+GSLPG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEA--KKGEWLPG------LPSPSYLNGSLPG 71
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAD 128
D GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + ++ I W++AG
Sbjct: 72 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGK- 130
Query: 129 PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
A S +L + +L +VE +RW D NP + + + ++ E G
Sbjct: 131 --AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLPPNECG 182
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 247
YPGG F+PL A TI+ K E+ + RLAM+A L F + GK P
Sbjct: 183 YPGG-IFNPLNFAPTIE-------------AKEKELANGRLAMLAFLGFVIQHNVTGKGP 228
Query: 248 LGAL 251
L
Sbjct: 229 FDNL 232
>gi|157361232|gb|ABV44672.1| photosystem I light-harvesting complex type 4 protein [Bambusa
oldhamii]
Length = 244
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 113/224 (50%), Gaps = 39/224 (17%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYR 94
+S+++S+ V A K W+P L +P +L+GSLPGD GFDPLGL +DP L+WY
Sbjct: 35 SSTRRSLRVEA---KGEWLPG------LPSPAYLNGSLPGDNGFDPLGLAEDPENLRWYV 85
Query: 95 EAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLM 148
+AEL++ RWAM V G+ + + + I W++AG + S +L + +L
Sbjct: 86 QAELVNARWAMLGVAGMLLPEVLTKIGIINAPLWYDAGK---STYFASSSTLFVIEFILF 142
Query: 149 GWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGV 208
+VE +RW D NP + + +N++ E GYP G F+PL T++
Sbjct: 143 HYVEIRRWQDIKNPGCVNQD------PIFKNYSLPPHECGYP-GSVFNPLNFEPTLEA-- 193
Query: 209 YIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + G GK P L
Sbjct: 194 -----------KEKELANGRLAMLAFLAFMVQHGITGKGPFENL 226
>gi|297819360|ref|XP_002877563.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297323401|gb|EFH53822.1| chlorophyll a/b-binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 252
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 107/210 (50%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P++L GSL GD GFDPLGL +DP LKW+ +AEL++GRWAM V
Sbjct: 55 KGEWLPG------LASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGV 108
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ + W++AG + S +L + +L +VE +RW D NP
Sbjct: 109 AGMLLPEVFTKLGIINVPEWYDAGKEQYFA---SSSTLFVIEFILFHYVEIRRWQDIKNP 165
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + + ++ GE GYPGG F+PL A T++ K
Sbjct: 166 GSVNQD------PIFKQYSLPKGEVGYPGG-IFNPLNFAPTLE-------------AKEK 205
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EI + RLAM+A L F + GK P L
Sbjct: 206 EIANGRLAMLAFLGFVVQHNVTGKGPFENL 235
>gi|312281571|dbj|BAJ33651.1| unnamed protein product [Thellungiella halophila]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 36/225 (16%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+ SS K+ K W+P L +P +L+GSL GD GFDPLGL +DP LKW+
Sbjct: 39 IGSSSKTASFKVEAKKGEWLPG------LASPGYLNGSLAGDNGFDPLGLAEDPENLKWF 92
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL++GRWAM V G+ + + ++ I W++AG + S +L + +L
Sbjct: 93 VQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFA---SSSTLFVIEFIL 149
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP S + + + ++ E GYPGG F+PL A T++
Sbjct: 150 FHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPTVE-- 200
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + GK P L
Sbjct: 201 -----------AKEKELANGRLAMLAFLGFVIQHNVTGKGPFENL 234
>gi|224124190|ref|XP_002330127.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
gi|222871261|gb|EEF08392.1| light-harvesting complex I protein Lhca4 [Populus trichocarpa]
Length = 251
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 116/244 (47%), Gaps = 38/244 (15%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S F+ G + SS S V A K W+P L +P +L+GSLPG
Sbjct: 20 SRFLAGAPSKLNRELSIKPMASSSPSFKVEA--KKGEWLPG------LPSPSYLNGSLPG 71
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAD 128
D GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + ++ I W++AG
Sbjct: 72 DNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGK- 130
Query: 129 PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
A S +L + +L +VE +RW D NP + + + ++ E G
Sbjct: 131 --AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLPPNECG 182
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTP 247
YPGG F+PL A TI+ K E+ + RLAM+A L F + GK P
Sbjct: 183 YPGG-IFNPLNFAPTIE-------------AKEKELANGRLAMLAFLGFVIQHNVTGKGP 228
Query: 248 LGAL 251
L
Sbjct: 229 FENL 232
>gi|449440798|ref|XP_004138171.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449477217|ref|XP_004154963.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 252
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +L+GSLPGD GFDPLGL +DP L+WY +AEL++GRWAM V
Sbjct: 53 KGEWLPG------LPSPMYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGV 106
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ I W++AG A S +L + +L +VE +RW D NP
Sbjct: 107 AGMLLPEVFTKIGIINAPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 163
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+ + + ++ E GYPGG F+PL A T++ K
Sbjct: 164 GCVNQD------PIFKQYSLPPNECGYPGG-IFNPLNFAPTLE-------------AKEK 203
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EI + RLAM+A L F + GK P L
Sbjct: 204 EIANGRLAMLAFLGFIVQHNVTGKGPFDNL 233
>gi|195617028|gb|ACG30344.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 252
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 110/225 (48%), Gaps = 32/225 (14%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGG--GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
SS+ A P ++S KG L +P +LDGSLPGD GFDPLGL +DP L+WY
Sbjct: 33 SSRLGRTATASPTRRSLKAEAKGEWLPGLPSPAYLDGSLPGDNGFDPLGLAEDPENLRWY 92
Query: 94 REAELIHGRWAMAAVVGIFVGQAWS------GIPWFEAGADPGAIAPFSFGSLLGTQLLL 147
+AEL++GRWAM V G+ + + + W++AG S +L + +L
Sbjct: 93 VQAELVNGRWAMLGVAGMLIPEVLTKAGLINAPQWYDAGKSEYFA---SSSTLFVIEFIL 149
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP S + + ++++ E GYPG F+PL A T++
Sbjct: 150 FHYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYPGS-VFNPLNFAPTLE-- 200
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + GK P L
Sbjct: 201 -----------AKEKELANGRLAMLAFLAFLIQHNVTGKGPFDNL 234
>gi|145079082|tpg|DAA05897.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Acetabularia acetabulum]
Length = 275
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/255 (34%), Positives = 109/255 (42%), Gaps = 91/255 (35%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK-------------------- 91
W+P N P WLDGSLPGD GFDPLGL K +L+
Sbjct: 53 WLP------NTTRPVWLDGSLPGDRGFDPLGLAKPTEYLQVELDEQNINMGVNKAGGIIG 106
Query: 92 -------------------------WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 126
+RE ELIHGRWAM A +G V + +G+ W EAG
Sbjct: 107 SYQESAELVSSEKRLQPYKEVFGLERFRECELIHGRWAMLACLGCIVAEGATGVSWVEAG 166
Query: 127 ADPGAIA-------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
A PFS L+ + +L+G E R N E SV
Sbjct: 167 KVELDGAQYFNFNLPFSITQLVWIEAILVGGAEIYR-----NTELDSV------------ 209
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
++ YPGG FDPL LA D+E+ +LK AEIKHARLAM+A L +
Sbjct: 210 ------KRCYPGG-IFDPLKLASD--------DSERSFKLKEAEIKHARLAMIAFLGYSI 254
Query: 240 EAG-QGKTPLGALGL 253
+AG G+ LG+L L
Sbjct: 255 QAGVTGQGALGSLAL 269
>gi|356539957|ref|XP_003538459.1| PREDICTED: chlorophyll a-b binding protein CP29.3,
chloroplastic-like [Glycine max]
Length = 282
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 107/239 (44%), Gaps = 84/239 (35%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDGS+ GD GFDP G K +L++
Sbjct: 71 PEWLDGSMIGDRGFDPFGFAKPAEYLQFDLDSLDQNLAKNIAGDVIGTRVEVAEVKPTPF 130
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIA 133
+RE ELIHGRWAM +G +A +G+ W +AG + G
Sbjct: 131 QPYSEVFGIQRFRECELIHGRWAMLGSLGALAVEALTGVAWQDAGKVELVEGSSYLGLPL 190
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ +++++G++E +R + +PE + YPGG+
Sbjct: 191 PFSLTTLIWIEVIVIGYIEFQRNAE-LDPEKRL----------------------YPGGR 227
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
FFDPL LA D E+ RL++AEIKH+RLAMV LIF +A GK P+ L
Sbjct: 228 FFDPLGLAN---------DPEEKARLQLAEIKHSRLAMVVFLIFAIQAAVTGKGPISFL 277
>gi|87313237|gb|ABD37915.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas incerta]
Length = 259
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 98/236 (41%), Gaps = 90/236 (38%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF---------------------- 89
W+P N PEWLDGSLPGD GFDPLGL K F
Sbjct: 59 WLP------NTARPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNVGKNNKGTVEA 112
Query: 90 -----------------------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 126
L +RE ELIHGRWAM A +G V +A +G+ W EAG
Sbjct: 113 IVQASPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAG 172
Query: 127 -------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
+ G PFS L+ +++L+G E R + +PE +
Sbjct: 173 KVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNTE-TDPEKRC------------- 218
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
YPGG FDPL LA D E+ RLK AEIKHARLAMV+
Sbjct: 219 ---------YPGG-VFDPLKLASE--------DEERAFRLKTAEIKHARLAMVSFF 256
>gi|255639053|gb|ACU19827.1| unknown [Glycine max]
Length = 290
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 108/249 (43%), Gaps = 90/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 57 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIG 110
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 111 TRTELADVKSTPFQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 170
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ + L++G++E +R + +PE +
Sbjct: 171 ELVEGSSYLGQPLPFSITTLIWIEALVIGYIEFQRNAE-LDPEKRL-------------- 215
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG +FDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 216 --------YPGGSYFDPLGLAS---------DPEKKATLQLAEIKHARLAMVGFLGFAVQ 258
Query: 241 AG-QGKTPL 248
A GK PL
Sbjct: 259 AAVTGKGPL 267
>gi|307106621|gb|EFN54866.1| hypothetical protein CHLNCDRAFT_134943 [Chlorella variabilis]
Length = 268
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/213 (36%), Positives = 103/213 (48%), Gaps = 31/213 (14%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI 111
W P G + P++LDGSL GD GFDPLGLG P L W AE+ HGR AM GI
Sbjct: 50 WFP----GNTAVVPDYLDGSLVGDNGFDPLGLGSSPEQLSWNVHAEVFHGRLAMTGCAGI 105
Query: 112 FVGQAW----SGIP-WFEAGADPGAIAP-FSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ + +P W+EAG P SFG+L+ + ++L G+ E KR D NP SQ
Sbjct: 106 LLTSLLHAGGADVPEWYEAGKVYMEKNPNVSFGALVYSTIVLSGFAEFKRLNDIRNPGSQ 165
Query: 166 SVEWATPWSRTAENFANATGEQG------YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
E+F G QG Y GG+FFDP+ G+ E+ +
Sbjct: 166 GS------GILPEDFKGVGGPQGRTVGGPYVGGRFFDPM--------GLCRGSPEQTLKY 211
Query: 220 KVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
K EI++ RLAM+ L F + GK P+ L
Sbjct: 212 KWNEIRNGRLAMIGFLGFAAQYCATGKGPIDNL 244
>gi|22753|emb|CAA78932.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 251
Score = 103 bits (257), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 85/264 (32%), Positives = 127/264 (48%), Gaps = 45/264 (17%)
Query: 1 MAAATSGAVL-----NGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPA 55
MA+ T+ A L + S+F+ G S+ LA R S+ + K W+P
Sbjct: 1 MASVTTQAALGVSCPSVCRSAFLTGSSVSR--LARRVRPGSNPAPARSFKVEAKGEWLPG 58
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
L +P +L+GSLPGD GFDPLGL +DP LKWY +AEL++GRWAM V G+ + +
Sbjct: 59 ------LSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPE 112
Query: 116 AWSGI------PWFEAGADPGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+ I W++A G + F S +L + +L +VE +RW D P S + +
Sbjct: 113 VLTSIGLINVPKWYDA----GKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQD 168
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
+ ++ E GYPGG F+PL + +++ K E+ + R
Sbjct: 169 ------PLFKQYSLPPNEVGYPGG-IFNPLNFSPSMEA-------------KEKELANGR 208
Query: 229 LAMVAMLIFYFEAG-QGKTPLGAL 251
LAM+A L F + GK P L
Sbjct: 209 LAMLAFLGFVVQHNVTGKGPFDNL 232
>gi|357147885|ref|XP_003574529.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 244
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 131/263 (49%), Gaps = 49/263 (18%)
Query: 1 MAAATSGAVLNGLG-SSFINGGKKSQALLAGTNRV----TSSKKSVVVAALPPKKSWIPA 55
MA+ T+ A + L S+ +N G L ++R+ ++S++S+ V A K W+P
Sbjct: 1 MASITARAPVAALRPSASLNSG-----FLGHSSRLGLASSTSRRSLRVEA---KGEWLPG 52
Query: 56 VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
L +P +LDG LPGD GFDPLGL +DP L+WY +AEL++GRWAM V G+ +
Sbjct: 53 ------LPSPAYLDGKLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLTPE 106
Query: 116 AWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
+ I W++AG + S +L + +L +VE +RW D P + +
Sbjct: 107 LLTKIGLINAPEWYDAGK---STYFASSSTLFVVEFILFHYVEIRRWQDIKEPGCVNQD- 162
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229
++++ E GYP G F+PL A T++ K EI + RL
Sbjct: 163 -----PIFKSYSLPPHECGYP-GSVFNPLNFAPTLE-------------AKEKEIANGRL 203
Query: 230 AMVAMLIFYFE-AGQGKTPLGAL 251
AM+A L F + A GK PL L
Sbjct: 204 AMLAYLGFSVQHAVTGKGPLDNL 226
>gi|326487922|dbj|BAJ89800.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493860|dbj|BAJ85392.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 245
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 36/235 (15%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
S L + RV +K + A+ K SW+P ++ +P +LDGSL GD GFDPL L
Sbjct: 21 SPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQ------SPAYLDGSLAGDNGFDPLAL 74
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSF 137
+DP L+W+ +AEL++GRWAM V G+ + + + W++AG + S
Sbjct: 75 AEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFA---SS 131
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L + +L +VE +RW D NP S + + ++++ E GYP G F+P
Sbjct: 132 STLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GSVFNP 184
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L A T+++ K E+ + RLAM+A L F + GK P L
Sbjct: 185 LNFAPTLEN-------------KEKELANGRLAMLAFLGFLVQHNVTGKGPFENL 226
>gi|445116|prf||1908421A light-harvesting complex IIa protein
Length = 286
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 111/248 (44%), Gaps = 92/248 (37%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P + PE+LDG+L GDYGFDP GLGK +L++
Sbjct: 54 WFPGAQA------PEYLDGTLVGDYGFDPFGLGKPAEYLQYDVDSLDQNLAQNLAGEIIG 107
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +G+ W +AG
Sbjct: 108 TRFEDADVKSTPFQPYAEVFGLQRFRECELIHGRWAMLATLGALTVEWLTGVTWQDAGKV 167
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PF+ +L+ ++L++G++E +R + +PE +
Sbjct: 168 ELVDGSSYLGQPLPFTITTLIWIEVLVIGYIEFQRNAE-LDPERRL-------------- 212
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG +FDPL LA D EK + L++AEIKHARLAMVA L F +
Sbjct: 213 --------YPGGSYFDPLGLAA---------DPEKKETLQLAEIKHARLAMVAFLGFAVQ 255
Query: 241 A---GQGK 245
A G+G+
Sbjct: 256 AAATGKGR 263
>gi|118489878|gb|ABK96737.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 275
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 85/236 (36%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDG++ GD GFDP LGK +L++
Sbjct: 65 PEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPF 124
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIA 133
+RE ELIHGRWAM +G +A +G+ W +AG + G
Sbjct: 125 QPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEGSSYLGQPL 184
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ +++++G++E +R + +PE + YPGG
Sbjct: 185 PFSLTTLIWIEVIVIGYIEFQRNAE-LDPEKRL----------------------YPGG- 220
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 248
+FDPL LA D EK++ L++AEIKHARLAMVA LIF +A GK P+
Sbjct: 221 YFDPLGLAS---------DPEKIENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 267
>gi|9624495|gb|AAF90200.1|AF287276_2 chlorophyll a/b-binding protein precursor [Hordeum vulgare]
Length = 228
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 36/235 (15%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
S L + RV +K + A+ K SW+P ++ +P +LDGSL GD GFDPL L
Sbjct: 4 SPRFLGDSGRVGLAKSTRRDVAVQAKGSWLPGLQ------SPAYLDGSLAGDNGFDPLAL 57
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSF 137
+DP L+W+ +AEL++GRWAM V G+ + + + W++AG + S
Sbjct: 58 AEDPEDLRWFVQAELVNGRWAMLGVAGMLIPEVLTKAGLLNAPEWYDAGKETYFA---SS 114
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L + +L +VE +RW D NP S + + ++++ E GYP G F+P
Sbjct: 115 STLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GSVFNP 167
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L A T+++ K E+ + RLAM+A L F + GK P L
Sbjct: 168 LNFAPTLEN-------------KEKELANGRLAMLAFLGFLVQHNVTGKGPFENL 209
>gi|356516812|ref|XP_003527087.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 115/235 (48%), Gaps = 33/235 (14%)
Query: 27 LLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG---NLINPEWLDGSLPGDYGFDPLGL 83
L G++ + + ++ PP S+ K G L +P +L+G+LPGD GFDPLGL
Sbjct: 22 FLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGL 81
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSF 137
+DP L+WY +AEL++GRWAM V G+ + + ++ I W++AG S
Sbjct: 82 AEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKSEYFA---SS 138
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L + +L +VE +RW D NP S + + + ++ E GYPG F+P
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPQHECGYPGS-VFNP 191
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L A T++ K E+ + RLAM+A L F + GK P L
Sbjct: 192 LNFAPTLEA-------------KEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 233
>gi|224101127|ref|XP_002312153.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
gi|222851973|gb|EEE89520.1| light-harvesting complex II protein Lhcb8 [Populus trichocarpa]
Length = 275
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 108/236 (45%), Gaps = 85/236 (36%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDG++ GD GFDP LGK +L++
Sbjct: 65 PEWLDGTMVGDRGFDPFALGKPAEYLQFDLDSLDQNLAKNLAGDVIGVRVDATEVKPTPF 124
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIA 133
+RE ELIHGRWAM +G +A +G+ W +AG + G
Sbjct: 125 QPYSEVFGLQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELIEGSSYLGQPL 184
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ +++++G++E +R + +PE + YPGG
Sbjct: 185 PFSLTTLIWIEVIVVGYIEFQRNAE-LDPEKRL----------------------YPGG- 220
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 248
+FDPL LA D EK++ L++AEIKHARLAMVA LIF +A GK P+
Sbjct: 221 YFDPLGLAS---------DPEKIENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 267
>gi|449439279|ref|XP_004137413.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
gi|449522871|ref|XP_004168449.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Cucumis sativus]
Length = 250
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 121/243 (49%), Gaps = 41/243 (16%)
Query: 15 SSFING--GKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
S F++G GK ++AL + + T+S K W+P L +P +LDGSL
Sbjct: 20 SRFLSGSSGKFNRAL---SVKPTTSSIPNAFKVEAKKGEWLPG------LPSPTYLDGSL 70
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-----GIP-WFEAG 126
PGD GFDPLGL +DP L+WY +AEL++GRWAM V G+ + + + +P W++AG
Sbjct: 71 PGDNGFDPLGLAEDPENLRWYTQAELVNGRWAMLGVAGMVLPEVLTNYGIINVPKWYDAG 130
Query: 127 ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
A S +L + +L +VE +RW D NP S + + + ++ +
Sbjct: 131 K---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPPND 181
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGK 245
GYPGG F+PL T++ + EI + RLAM+A L F + GK
Sbjct: 182 VGYPGG-IFNPLNFEPTLE-------------AREKEIANGRLAMLAFLGFIVQHNVTGK 227
Query: 246 TPL 248
P
Sbjct: 228 GPF 230
>gi|312281797|dbj|BAJ33764.1| unnamed protein product [Thellungiella halophila]
Length = 273
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 114/234 (48%), Gaps = 49/234 (20%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGK 85
TS +KS V K + P VK G N P W LDGSLPGDYGFDPLGL
Sbjct: 30 TSRRKSSFVV----KATSTPPVKQGAN--RPLWFASSQSLTYLDGSLPGDYGFDPLGL-S 82
Query: 86 DP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPG 130
DP F+ +W E+I+GR+AM G + A + +PWF+ G P
Sbjct: 83 DPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPP 142
Query: 131 AIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
A +S+ +L ++ LMG+ E +R D++NP S ++ E + +GE
Sbjct: 143 A-GTYSYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGFSGSGE 197
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL K + LK+ EIK+ RLAM+A+L ++ +
Sbjct: 198 PAYPGGPFFNPLGFGKNEKS---------MKELKLKEIKNGRLAMLAILGYFVQ 242
Score = 37.4 bits (85), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GK+ +K + E+ +GR AM A++G FV +G+
Sbjct: 199 AYPGGPFFNPLGFGKNEKSMKELKLKEIKNGRLAMLAILGYFVQGLVTGV 248
>gi|255571917|ref|XP_002526901.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223533800|gb|EEF35532.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 282
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 107/236 (45%), Gaps = 85/236 (36%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
PEWLDG++ GD GFDP GLGK +L++
Sbjct: 72 PEWLDGTMVGDRGFDPFGLGKPAEYLQFELDSLDQNLAKNVAGDIIGVRVEPNEVKPTPF 131
Query: 93 -----------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIA 133
+RE E+IHGRWAM +G +A +G+ W +AG G
Sbjct: 132 QPYSEVFGLQRFRECEVIHGRWAMLGTLGALAVEALTGVAWQDAGKVELVEGSSYLGQPL 191
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
PFS +L+ ++L++G++E +R + +PE + YPGG
Sbjct: 192 PFSLTTLIWIEVLVIGYIEFQRNAE-LDPEKRI----------------------YPGG- 227
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 248
+FDPL LA D EK + L++AEIKH+RLAMVA LIF +A GK P+
Sbjct: 228 YFDPLGLAS---------DPEKKENLQLAEIKHSRLAMVAFLIFGIQAAFTGKGPI 274
>gi|829287|emb|CAA78901.1| Lhca4 protein,Type 4 protein of light-harvesting complex of
photosystem I [Pinus sylvestris]
Length = 244
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S F+ G S+ LA R S+ + K W+P L +P +L+GSLPG
Sbjct: 13 SGFLTGSSVSR--LARRVRPGSNPAPARSFKVEAKGEWLPG------LSSPSYLNGSLPG 64
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAD 128
D GFDPLGL +DP LKWY +AEL++GRWAM V G+ + + + I W++A
Sbjct: 65 DNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDA--- 121
Query: 129 PGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
G + F S +L + +L +VE +RW D P S + + + ++ E
Sbjct: 122 -GKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQD------PLFKQYSLPPNEV 174
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKT 246
GYPGG F+PL + +++ K E+ + RLAM+A L F + GK
Sbjct: 175 GYPGG-IFNPLNFSPSMEA-------------KEKELANGRLAMLAFLGFVVQHNVTGKG 220
Query: 247 PLGAL 251
P L
Sbjct: 221 PFDNL 225
>gi|575349|emb|CAA57877.1| light-harvesting chlorophyll a /b binding protein [Nicotiana
tabacum]
Length = 200
Score = 101 bits (252), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 104/210 (49%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +LDGSLPGD GF PLGL +DP LKW+ +AEL++ RWAM V
Sbjct: 2 KGQWLPG------LASPTYLDGSLPGDXGFAPLGLAEDPENLKWFVQAELVNVRWAMLGV 55
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ I W++AG + S +L + +L +VE +RW D NP
Sbjct: 56 AGMLLPEVFTNIGILNVPKWYDAGKEEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNP 112
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + +N++ E GYPGG F+PL A T + K
Sbjct: 113 GSVNQ------XPIFKNYSLPPNEVGYPGG-IFNPLNFAPTAEA-------------KEK 152
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EI + RLAM+A L F + GK P L
Sbjct: 153 EIANGRLAMLAFLGFIVQHNVVGKGPFDNL 182
>gi|169743368|gb|ACA66262.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 245
Score = 101 bits (251), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 40/225 (17%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYR 94
+S+++S+ V A K W+P L +P +LDGSL GD GFDPLGL +DP L+WY
Sbjct: 35 SSTRRSLRVEA---KGEWLPG------LASPAYLDGSLAGDNGFDPLGLAEDPENLRWYV 85
Query: 95 EAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLM 148
+AEL++ RWAM V G+ V + + I W++AG + S +L + +L
Sbjct: 86 QAELVNARWAMLGVAGVLVPEVLTKIGIINAPQWYDAGK---STYFASSSTLFVIEFILF 142
Query: 149 GWVESKRWVDFF-NPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+VE +RW D NP + + +N++ E GYP G F+PL T++
Sbjct: 143 HYVEIRRWQDIIKNPGCVNQD------PIFKNYSLPPHECGYP-GSVFNPLNFEPTLEA- 194
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + G GK P L
Sbjct: 195 ------------KEKELANGRLAMLAFLGFMVQHGITGKGPFENL 227
>gi|384248196|gb|EIE21681.1| chlorophyll a/b-binding protein CP29 [Coccomyxa subellipsoidea
C-169]
Length = 267
Score = 100 bits (250), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 114/281 (40%), Gaps = 97/281 (34%)
Query: 19 NGGKKSQALLAGTNRVTSSKKSVVVAALPPKK-----SWIPAVKGGGNLINPEWLDGSLP 73
NG K ++A T V ++K+ A KK W+P N P WLDGSLP
Sbjct: 19 NGAK---TVMAATKIVRKAQKAANSATRTYKKFDGDALWLP------NTQRPAWLDGSLP 69
Query: 74 GDYGFDPLGLGKDPAFLK------------------------------------------ 91
GD GFDPL L K FL+
Sbjct: 70 GDRGFDPLELSKPSEFLQVDLDQSDINKSVNKAGGIVGKYSSSKVQATGAALSPYSEVFG 129
Query: 92 --WYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP-------GAIAPFSFGSLLG 142
+RE ELIHGRWAM +G+ + +A +G+ W +AG G PFS L+
Sbjct: 130 LQRFRETELIHGRWAMLGALGVVIAEATTGVSWVDAGKVELDGTQYLGFSLPFSISQLIW 189
Query: 143 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAG 202
++LL+G E R N + E+ YPGG FDPL LA
Sbjct: 190 IEVLLVGGAEIYR-----------------------NRSTDLQERIYPGG-LFDPLKLAS 225
Query: 203 TIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQ 243
D+++ +L+ AEIKH RLAMVA L ++ Q
Sbjct: 226 D--------DSQRTFKLREAEIKHGRLAMVAFLGAQLQSRQ 258
>gi|388498024|gb|AFK37078.1| unknown [Lotus japonicus]
Length = 252
Score = 100 bits (249), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 103/210 (49%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +L+GSLPGD GFDPL L +DP LKW+ +AEL++GRWA V
Sbjct: 53 KGEWLPG------LASPNYLNGSLPGDNGFDPLALAEDPENLKWFVQAELVNGRWATLGV 106
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + + I W++AG A S +L + +L +VE +RW D NP
Sbjct: 107 AGMLLPEVLTNIGLINVPKWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 163
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + + ++ E GYPGG F+PL A T + K
Sbjct: 164 GSVNQD------PIFKQYSLPPNEVGYPGG-IFNPLNFAPT-------------EEAKER 203
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
E+ + RLAM+A L F + GK P L
Sbjct: 204 ELANGRLAMLAFLGFIVQHNVTGKGPFDNL 233
>gi|322812534|pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 107/249 (42%), Gaps = 91/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 14 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIG 67
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG-- 126
+RE ELIHGRWAM A +G + +GI W +AG
Sbjct: 68 TRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKV 127
Query: 127 ------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+ G PFS +L+ ++L++G++E +R N
Sbjct: 128 ELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR-----------------------NA 164
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
T ++ YPGG FDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 165 ELDTEKRLYPGGT-FDPLGLAS---------DPEKKPILQLAEIKHARLAMVGFLGFAVQ 214
Query: 241 AG-QGKTPL 248
A GK PL
Sbjct: 215 AAVTGKGPL 223
>gi|224285629|gb|ACN40533.1| unknown [Picea sitchensis]
Length = 249
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 77/202 (38%), Positives = 99/202 (49%), Gaps = 56/202 (27%)
Query: 68 LDGSLPGDYGFDPLGLGKDPAF------------LKWYREAELIHGRWAMAAVVGIFVGQ 115
LD +LPGD D +G DP L+ +RE ELIHGRWAM V+G +
Sbjct: 73 LDLNLPGDLLGDFVG---DPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVE 129
Query: 116 AWSGIPWFEAGADP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
++GI W +AG G PF+ +L+ ++LL+G++E +R N E
Sbjct: 130 GFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQR-----NAE---- 180
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
P +R YPGGK+FDP LA D K DRLK+AEIKHA
Sbjct: 181 --VDPETRL------------YPGGKYFDPFGLA---------VDEIKKDRLKLAEIKHA 217
Query: 228 RLAMVAMLIFYFEAG-QGKTPL 248
RLAMVA LIF +A K PL
Sbjct: 218 RLAMVAFLIFAIQAAVTSKGPL 239
>gi|195613254|gb|ACG28457.1| chlorophyll a-b binding protein 8 [Zea mays]
gi|238013956|gb|ACR38013.1| unknown [Zea mays]
gi|413954858|gb|AFW87507.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 267
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/249 (31%), Positives = 123/249 (49%), Gaps = 47/249 (18%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI-------PAVKGGGNLI------NPEWLDG 70
+QALL+G + +S V + K ++ PA +G + + +LDG
Sbjct: 3 AQALLSGRQLLGRPVQSAVSRSSARKAPFVVRASSSPPAKQGADRQLWFASKQSLSYLDG 62
Query: 71 SLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW------- 117
+LPGDYGFDPLGL DP F+ KW E+I+GR+AM VG + +
Sbjct: 63 TLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIP 121
Query: 118 --SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 171
+ +PWF+ G P A +++ +L + LMG+ E +R D++NP S ++
Sbjct: 122 PETALPWFKTGVIPPA-GTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFL 180
Query: 172 PWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAM 231
E F +G+ YPGG F+PL T K+ ++ LK+ EIK+ RLAM
Sbjct: 181 ----GLEKFLAGSGDPSYPGGPLFNPLGFGKTEKE---------MNELKLKEIKNGRLAM 227
Query: 232 VAMLIFYFE 240
+A+L ++ +
Sbjct: 228 LAILGYFIQ 236
Score = 37.0 bits (84), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
D S PG F+PLG GK + + E+ +GR AM A++G F+ +G+ F+ D
Sbjct: 191 DPSYPGGPLFNPLGFGKTEKEMNELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLD 250
>gi|357158365|ref|XP_003578105.1| PREDICTED: chlorophyll a-b binding protein 4, chloroplastic-like
[Brachypodium distachyon]
Length = 246
Score = 100 bits (248), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 73/222 (32%), Positives = 111/222 (50%), Gaps = 39/222 (17%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
+++ V V A K W+P L +P +LDGSL GD GFDPL L +DPA L+W+ +A
Sbjct: 39 ARRDVAVQA---KGQWLPG------LASPAYLDGSLAGDNGFDPLALAEDPADLRWFVQA 89
Query: 97 ELIHGRWAMAAVVGIFVGQ------AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGW 150
EL++GRWAM V G+ + + S W++AG + S +L + +L +
Sbjct: 90 ELVNGRWAMLGVAGMLIPELLTKAGLLSAPEWYDAGKETYFA---SSSTLFVVEFILFHY 146
Query: 151 VESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYI 210
VE +RW D NP S + + ++++ + GYP G F+PL A T+++
Sbjct: 147 VEIRRWQDIKNPGSVNQD------PIFKSYSLPDHDCGYP-GSVFNPLNFAPTLEN---- 195
Query: 211 PDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K E+ + RLAM+A L F + GK P L
Sbjct: 196 ---------KEKELANGRLAMLAFLGFLVQHNVTGKGPFENL 228
>gi|145079136|tpg|DAA05900.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Acetabularia acetabulum]
Length = 192
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 70/179 (39%), Positives = 92/179 (51%), Gaps = 42/179 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--PW 122
PE LDGSL GD+GFDPLGLG +P LKWY EAE +GRWAM AV GI +GQ G+ W
Sbjct: 19 PEHLDGSLAGDFGFDPLGLGSEPDRLKWYVEAEKTNGRWAMMAVAGI-LGQELLGVTPKW 77
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
FEAGA I F LL + +++G++E+KR+ F
Sbjct: 78 FEAGAKDYGI---PFFPLLAMEAIILGFLETKRYQGF----------------------K 112
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
TG G+ FDP + PD +++ EIK+ RLAM+A + F +A
Sbjct: 113 TTGSSGFLNSFPFDPANMNS--------PD------MQLKEIKNGRLAMIAFVGFSVQA 157
>gi|302854202|ref|XP_002958611.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300256072|gb|EFJ40348.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 228
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 76/198 (38%), Positives = 91/198 (45%), Gaps = 46/198 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGKDPA LK + E+E+IHGRWAM V G + W++
Sbjct: 46 PAWLPDDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGALAVELLGYGNWYD 105
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M E +R
Sbjct: 106 APLWAVTGGKATWFGIEVPFDLNTLLAFEFVAMAAAEGQR-------------------- 145
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
N G YPGG FDPL A D+ K LK+ EIK+ RLAMVA L
Sbjct: 146 ------NDAGGVIYPGGA-FDPLGFA---------KDSSKAGELKLKEIKNGRLAMVAFL 189
Query: 236 IFYFE-AGQGKTPLGALG 252
F + A GK PL ALG
Sbjct: 190 GFIAQHAATGKGPLAALG 207
>gi|413922347|gb|AFW62279.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 242
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 25/211 (11%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
MA+ T+ A + L S + + L T + +++S+ A K W+P
Sbjct: 1 MASVTARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEA---KGEWLPG----- 52
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-- 118
L +P +LDGSLPGD GFDPLGL +DP L+WY +AEL++GRWAM V G+ + + +
Sbjct: 53 -LPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKA 111
Query: 119 ----GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
W++AG S +L + +L +VE +RW D NP S + +
Sbjct: 112 GLINAPQWYDAGKSEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------ 162
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
++++ E GYPG F+PL A T++
Sbjct: 163 PIFKSYSLPPHECGYPGS-VFNPLNFAPTLE 192
>gi|413922348|gb|AFW62280.1| hypothetical protein ZEAMMB73_290736 [Zea mays]
Length = 224
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/211 (32%), Positives = 107/211 (50%), Gaps = 25/211 (11%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
MA+ T+ A + L S + + L T + +++S+ A K W+P
Sbjct: 1 MASVTARAPVAALRPSSSSAFLGHSSRLGRTATASPTRRSLKAEA---KGEWLPG----- 52
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-- 118
L +P +LDGSLPGD GFDPLGL +DP L+WY +AEL++GRWAM V G+ + + +
Sbjct: 53 -LPSPAYLDGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVAGMLIPEVLTKA 111
Query: 119 ----GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
W++AG S +L + +L +VE +RW D NP S + +
Sbjct: 112 GLINAPQWYDAGKSEYFA---SSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQD------ 162
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
++++ E GYPG F+PL A T++
Sbjct: 163 PIFKSYSLPPHECGYPGS-VFNPLNFAPTLE 192
>gi|20794|emb|CAA41407.1| Type III chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 286
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 125/275 (45%), Gaps = 55/275 (20%)
Query: 1 MAAATSGAV----LNGLGSSFINGGKKSQALLAGTNRV-----TSSKKSVVVAALPPKKS 51
MAA T+ A+ L+ +G G++ Q LL G V + S + S
Sbjct: 1 MAAITAKALVSPSLSAIGGDI---GRRQQLLLGGKALVLPPYFSQSSRRTSFTVRSQASS 57
Query: 52 WIPAVKGGGNL-----INPEWLDGSLPGDYGFDPLGLGKDP----AFLK--WYREAELIH 100
P +G L + +LDGSLPGDYGFDPLGL DP F++ W E+I+
Sbjct: 58 NKPVKQGDRQLWFASDQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFMEPGWLVYGEIIN 116
Query: 101 GRWAMAAVVGIFVGQAW---------SGIPWFEAGADPGA------IAPFSFGSLLGTQL 145
GR+AM VG + + +PWF+ G P A PF +L ++
Sbjct: 117 GRYAMLGAVGAIAPEILGKLGLIPQETALPWFQTGVIPPAGTYNYWADPF---TLFVLEM 173
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LMG+ E +R D+ NP S ++ E F +G YPGG F+PL
Sbjct: 174 ALMGFAEHRRLQDYRNPGSMGKQYFL----GLEKFLGGSGNPAYPGGPLFNPLGFG---- 225
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
D + + LK+ E+K+ RLAM+A+L ++ +
Sbjct: 226 -----KDEKSMKELKLKEVKNGRLAMLAILGYFIQ 255
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 32/56 (57%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+ D
Sbjct: 214 PGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQNLLD 269
>gi|398313943|emb|CCI55398.1| PSI antenna protein Lhca3 [Marchantia polymorpha]
Length = 279
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/262 (31%), Positives = 125/262 (47%), Gaps = 45/262 (17%)
Query: 4 ATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLI 63
A +GAV + GG + A ++++ S+VV A K VK LI
Sbjct: 9 AVAGAVFAPAQEQRLMGGNALRVSFAPIG-TSNARSSIVVRASSDKP-----VKANRQLI 62
Query: 64 -----NPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIF 112
+ +LDGSLPGDYGFDPLGL DP F+ W R AE+I+GR+AM G
Sbjct: 63 FASEQSLSYLDGSLPGDYGFDPLGL-SDPQGAGGFIDPNWLRYAEIINGRFAMLGAAGAI 121
Query: 113 VGQAW---------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDF 159
+ + + IPWF+ G P + +S+ +L ++ LMG+ E +R D+
Sbjct: 122 APEIFGKIGLIPQETAIPWFQTGVIP-PLGQYSYWADPYTLFVLEMALMGFAEHRRAQDY 180
Query: 160 FNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219
+ P S ++ + E +G+ YPGG F+ L D + + L
Sbjct: 181 YKPGSMGKQYFLGF----EKVLGGSGDPAYPGGPLFNFLGFGR---------DEKSMKDL 227
Query: 220 KVAEIKHARLAMVAMLIFYFEA 241
KV E+K+ RLAM+A+L ++ +A
Sbjct: 228 KVKEVKNGRLAMLAVLGYFIQA 249
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+ LG G+D +K + E+ +GR AM AV+G F+ ++G+ F+
Sbjct: 203 DPAYPGGPLFNFLGFGRDEKSMKDLKVKEVKNGRLAMLAVLGYFIQAIFTGVGPFQ 258
>gi|293337343|gb|ADE42967.1| type III chlorophyll a/b binding protein [Gardenia jasminoides]
Length = 274
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 123/252 (48%), Gaps = 42/252 (16%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVA----ALPPKKSWIPAVKGGGNLINPEWLDG 70
SS + ++ +L G + +SS + V A A PP K + + +LDG
Sbjct: 10 SSITASAEAARQILGGRSFQSSSSRKVSFAVRAEATPPAKQGADRQLWFASKQSLSYLDG 69
Query: 71 SLPGDYGFDPLGLGKDP----AFLK--WYREAELIHGRWAMAAVVGI----FVGQA---- 116
SLPGDYGFDPLGL DP F++ W E+I+GR+AM VG +G+A
Sbjct: 70 SLPGDYGFDPLGL-SDPEGTGGFIEPSWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIP 128
Query: 117 -WSGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEW 169
+ +PWF+ G P A P+ +L +L LMG+ E +R+ DF P S ++
Sbjct: 129 PETALPWFKTGVIPPAGTYDYWADPY---TLFVFELALMGFAEHRRFQDFQKPGCLSKQY 185
Query: 170 ATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229
+ E + +G YPGG F+PL D + L LK+ E+K+ RL
Sbjct: 186 FLGF----EKYFEGSGNPIYPGGPLFNPLGFG---------KDEKSLKDLKLKEVKNGRL 232
Query: 230 AMVAMLIFYFEA 241
AM+A+L ++ +A
Sbjct: 233 AMLAILGYFVQA 244
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 202 PGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 249
>gi|268612161|pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612179|pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
gi|268612197|pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 81/247 (32%), Positives = 115/247 (46%), Gaps = 38/247 (15%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGS 71
GL S F+ GG + R S K W+P L +P +L GS
Sbjct: 17 GLKSRFL-GGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPG------LASPGYLTGS 69
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + ++ I W+ A
Sbjct: 70 LPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAA 129
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G + S +L + +L +VE +RW D NP S + + + ++ G
Sbjct: 130 GKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAG 180
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QG 244
E GYPGG F+PL A T++ K EI + RL M+A L F + G
Sbjct: 181 EVGYPGG-IFNPLNFAPTLEA-------------KEKEIANGRL-MLAFLGFIIQHNVTG 225
Query: 245 KTPLGAL 251
K P L
Sbjct: 226 KGPFDNL 232
>gi|115476576|ref|NP_001061884.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|42407519|dbj|BAD10636.1| putative chlorophyll a/b-binding protein precursor [Oryza sativa
Japonica Group]
gi|113623853|dbj|BAF23798.1| Os08g0435900 [Oryza sativa Japonica Group]
gi|125603526|gb|EAZ42851.1| hypothetical protein OsJ_27444 [Oryza sativa Japonica Group]
gi|215695363|dbj|BAG90554.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737533|dbj|BAG96663.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737603|dbj|BAG96733.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765675|dbj|BAG87372.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 244
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/246 (30%), Positives = 117/246 (47%), Gaps = 38/246 (15%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG 60
MA+ T+ + L SS KS L + R+ + + K W+P
Sbjct: 1 MASVTARTPVAALRSS---ASLKSTFLGQSSTRLARAPTTRRNVRAEAKGEWLPG----- 52
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
L +P +L+GSLPGD GFDPLGL +DP L+W+ +AEL++GRWAM V G+ + + + I
Sbjct: 53 -LPSPTYLNGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVLTKI 111
Query: 121 ------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
W++AG A S +L + +L +VE +RW D NP + +
Sbjct: 112 GLIDAPQWYDAGK---ATYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------ 162
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
++++ E GYPG F+PL T++ K E+ + RLAM+A
Sbjct: 163 PIFKSYSLPPHECGYPGS-VFNPLNFEPTLEA-------------KEKELANGRLAMLAF 208
Query: 235 LIFYFE 240
L F +
Sbjct: 209 LGFLVQ 214
>gi|145079837|tpg|DAA05940.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Micromonas sp. CCMP490]
Length = 233
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 96/191 (50%), Gaps = 41/191 (21%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-GIP 121
+ P LDG+LPGD+GFDPLGLG DPA LK+Y+EAEL++ RWAM AV GI A + G P
Sbjct: 59 VAPPHLDGTLPGDFGFDPLGLGADPARLKYYQEAELMNSRWAMMAVAGITTTDALNIGGP 118
Query: 122 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
W+EAGA F +LL Q +MG +E KR +
Sbjct: 119 WYEAGAGD---YDFPIPALLAVQFPVMGILELKRIRGWL--------------------- 154
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
ATG+ G +DP+ + D + V EIK+ RLAM+A + +A
Sbjct: 155 -ATGKSGVNSDFPWDPMGMNN--------------DAMAVKEIKNGRLAMIAFVGVVVQA 199
Query: 242 GQGKT-PLGAL 251
+T P+ AL
Sbjct: 200 IVYRTGPVAAL 210
>gi|125561654|gb|EAZ07102.1| hypothetical protein OsI_29351 [Oryza sativa Indica Group]
Length = 244
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 108/214 (50%), Gaps = 38/214 (17%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R +++++V A K W+P L +P +L+GSLPGD GFDPLGL +DP L+W
Sbjct: 33 RAPTTRRNVRAEA---KGEWLPG------LPSPTYLNGSLPGDNGFDPLGLAEDPENLRW 83
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
+ +AEL++GRWAM V G+ + + + I W++AG A S +L + +
Sbjct: 84 FVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGK---ATYFASSSTLFVIEFI 140
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L +VE +RW D NP + + ++++ E GYPG F+PL T++
Sbjct: 141 LFHYVEIRRWQDIKNPGCVNQD------PIFKSYSLPPHECGYPGS-VFNPLNFEPTLEA 193
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
K E+ + RLAM+A L F +
Sbjct: 194 -------------KEKELANGRLAMLAFLGFLVQ 214
>gi|356508545|ref|XP_003523016.1| PREDICTED: chlorophyll a-b binding protein P4, chloroplastic-like
[Glycine max]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 33/235 (14%)
Query: 27 LLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG---NLINPEWLDGSLPGDYGFDPLGL 83
L G++ + + ++ PP S+ K G L +P +L+G+LPGD GFDPLGL
Sbjct: 22 FLTGSSGKLNREVTMRPMGCPPSASFKVEAKKGEWLPGLASPTYLNGTLPGDNGFDPLGL 81
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSF 137
+DP L+WY +AEL++GRWAM V G+ + + ++ W++AG S
Sbjct: 82 AEDPENLRWYVQAELVNGRWAMLGVAGMLLPEVFTKFGIINAPQWYDAGKSEYFA---SS 138
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L + +L +VE +RW D NP + + + ++ E GYPG F+P
Sbjct: 139 STLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLPPHECGYPGS-VFNP 191
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L A T++ K E+ + RLAM+A L F + GK P L
Sbjct: 192 LNFAPTLEA-------------KEKELANGRLAMLAFLGFIVQHNVTGKGPFENL 233
>gi|13265501|gb|AAG40043.2|AF324692_1 AT3g54890 [Arabidopsis thaliana]
Length = 241
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/200 (38%), Positives = 103/200 (51%), Gaps = 46/200 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W +
Sbjct: 55 PAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVK 114
Query: 125 A---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 115 AQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------- 166
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
YPGG FDPL Y D +KL+ LKV EIK+ RLA++A
Sbjct: 167 ---------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALLA 201
Query: 234 MLIFYFE--AGQGKTPLGAL 251
+ F + A G PL L
Sbjct: 202 FVGFCVQQSAYPGTGPLENL 221
>gi|302787172|ref|XP_002975356.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156930|gb|EFJ23557.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 120/249 (48%), Gaps = 39/249 (15%)
Query: 1 MAAATSGAVLN-GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKK-SWIPAVKG 58
MAA+T A + S+F++G S L G+ V + + + KK W P
Sbjct: 1 MAASTMQASIGVSCPSTFLSG--SSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPG--- 55
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
L +P +L+GSLPGD GFDPLGL DPA LKWY +AEL +GRWAM V G+ + + +
Sbjct: 56 ---LASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLT 112
Query: 119 GI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
I W++AG AP S +L + L+ +VE +RW D P S + +
Sbjct: 113 KIGVINAPLWYDAGKVE-YFAPAS--TLFVIEFLMFHYVEVRRWQDIKYPGSVNQD---- 165
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ ++ E GYPGG F+PL + K E+ + RLAM+
Sbjct: 166 --PIFKGYSLPPNEVGYPGG-IFNPLNFPAN-------------EEYKEKELANGRLAML 209
Query: 233 AMLIFYFEA 241
A L F ++
Sbjct: 210 AFLGFIIQS 218
>gi|110736814|dbj|BAF00366.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 49/233 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S KKS V K + P VK G N P W LDGSLPGDYGFDPLGL D
Sbjct: 31 SQKKSSFVV----KAAATPPVKQGAN--RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SD 83
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGA 131
P F+ +W E+I+GR+AM G + A + +PWF+ G P A
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA 143
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R D++NP S ++ E +G
Sbjct: 144 -GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNP 198
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 199 AYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
>gi|15233115|ref|NP_191049.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|75220543|sp|Q01667.1|CAB6_ARATH RecName: Full=Chlorophyll a-b binding protein 6, chloroplastic;
AltName: Full=LHCI-730; AltName: Full=LHCII type III
CAB-6; AltName: Full=Light-harvesting complex protein
Lhca1; Flags: Precursor
gi|268612158|pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612176|pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
gi|268612194|pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
gi|11762180|gb|AAG40368.1|AF325016_1 AT3g54890 [Arabidopsis thaliana]
gi|11908038|gb|AAG41448.1|AF326866_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12642856|gb|AAK00370.1|AF339688_1 putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|13605732|gb|AAK32859.1|AF361847_1 AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|16207|emb|CAA39534.1| chlorophyll A/B-binding protein [Arabidopsis thaliana]
gi|166644|gb|AAA32759.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|4678304|emb|CAB41095.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|17979245|gb|AAL49939.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|20453135|gb|AAM19809.1| AT3g54890/F28P10_130 [Arabidopsis thaliana]
gi|23507771|gb|AAN38689.1| At3g54890/F28P10_130 [Arabidopsis thaliana]
gi|332645785|gb|AEE79306.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 241
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/201 (37%), Positives = 103/201 (51%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +KL+ LKV EIK+ RLA++
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALL 200
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENL 221
>gi|193875788|gb|ACF24530.1| chlorophyll a/b binding protein CP29 [Gymnochlora stellata]
Length = 290
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 107/274 (39%), Gaps = 97/274 (35%)
Query: 30 GTNRVTSSKKSVVVAALPPKKS----WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
G NR+ + PKK W+P N + P WLDGSLPGD GFDPLGL K
Sbjct: 46 GINRMMQVNAKSKIKPQAPKKDSDPLWLP------NTVRPTWLDGSLPGDRGFDPLGLSK 99
Query: 86 DPAFLKW---------------------------------------------YREAELIH 100
+L++ +RE ELIH
Sbjct: 100 PAEYLQYDVDQLDQNQAVNFAGKVIGKFDGGIDEVDGGNTLSPYSDIFGLRRFRECELIH 159
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIA-------PFSFGSLLGTQLLLMGWVES 153
GRWAM A +G V + +G+PW +AG A PF+ L ++LL+G E
Sbjct: 160 GRWAMLATLGAVVAELSTGVPWDQAGKVELDGARYLNFNLPFTVSQLTLLEVLLVGGAEI 219
Query: 154 KRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDT 213
R N ++ YPGG +FDPL G+
Sbjct: 220 YR-----------------------NTETDLDKRLYPGG-YFDPL--------GLTTKSA 247
Query: 214 EKLDRLKVAEIKHARLAMVAML---IFYFEAGQG 244
E+ L+ AEIKH RLAMVA + F G+G
Sbjct: 248 EQTQNLREAEIKHGRLAMVAAFGCGVQAFTTGEG 281
>gi|15219941|ref|NP_176347.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|334183551|ref|NP_001185280.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|4585882|gb|AAD25555.1|AC005850_12 PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16649019|gb|AAL24361.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20260044|gb|AAM13369.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332195725|gb|AEE33846.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195727|gb|AEE33848.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 273
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 49/233 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S KKS V K + P VK G N P W LDGSLPGDYGFDPLGL D
Sbjct: 31 SQKKSSFVV----KAAATPPVKQGAN--RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SD 83
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGA 131
P F+ +W E+I+GR+AM G + A + +PWF+ G P A
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA 143
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R D++NP S ++ E +G
Sbjct: 144 -GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNP 198
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 199 AYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
>gi|20218813|emb|CAC84491.1| putative chlorophyll a/b-binding protein type 4 [Pinus pinaster]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 118/245 (48%), Gaps = 40/245 (16%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S F+ G S+ LA R S+ + K W+P L +P +L+GSLPG
Sbjct: 20 SGFLTGSSVSR--LARRVRPGSNPAPARSFKVEAKGEWLPG------LSSPSYLNGSLPG 71
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGAD 128
D G DPLGL +DP LKWY +AEL++GRWAM V G+ + + + I W++A
Sbjct: 72 DNGXDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMXIPEVLTSIGLINVPKWYDA--- 128
Query: 129 PGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
G + F S +L + +L +VE +RW D P S + + ++++ E
Sbjct: 129 -GKVEYFASSXTLFVIEFILFHYVELRRWQDIKYPGSVNQD------PIXKSYSLPPNEV 181
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKT 246
GYPGG F+PL + +++ K E+ + RLAM+A L F + GK
Sbjct: 182 GYPGG-IFNPLNFSPSME-------------AKEKELANGRLAMLAFLGFVVQHNVTGKG 227
Query: 247 PLGAL 251
P L
Sbjct: 228 PFDNL 232
>gi|430947|gb|AAA18206.1| PSI type III chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 273
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 79/233 (33%), Positives = 112/233 (48%), Gaps = 49/233 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S KKS V K + P VK G N P W LDGSLPGDYGFDPLGL D
Sbjct: 31 SQKKSSFVV----KAAAAPPVKQGAN--RPLWVASSQSLSYLDGSLPGDYGFDPLGL-SD 83
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGA 131
P F+ +W E+I+GR+AM G + A + +PWF+ G P A
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA 143
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R D++NP S ++ E +G
Sbjct: 144 -GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNP 198
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 199 AYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Score = 38.9 bits (89), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
>gi|226856796|gb|ACO87375.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 16/148 (10%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--- 120
+P +L+GSLPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 121 ---PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W++AG A S +L + +L +VE +RW D NP + +
Sbjct: 61 NVPKWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIL 111
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIK 205
+ ++ A E GYPGG F+PL A T++
Sbjct: 112 KQYSLAPHECGYPGG-IFNPLNFAPTLE 138
>gi|149242540|pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 6 RPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 65
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 66 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 118
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +KL+ LKV EIK+ RLA++
Sbjct: 119 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALL 152
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 153 AFVGFCVQ 160
>gi|159478875|ref|XP_001697526.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19749357|gb|AAD03732.2| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158274405|gb|EDP00188.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 268
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 103/225 (45%), Gaps = 53/225 (23%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + G P +L G PGDYG+D GL DP K YRE ELIH RWAM
Sbjct: 55 PDRGLWLGPLSG----TTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAML 110
Query: 107 AVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLL 147
+G + A +G P WF+AGA +PG + S + L Q++L
Sbjct: 111 GALGCITPELLAKNGTPIVEPVWFKAGAQIFAEGGLDYLGNPGLVHAQSILATLAVQVIL 170
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MG +E R P + + ++ +PGG+FFDPL LA
Sbjct: 171 MGAIEGYRVNG--GPAGEGL------------------DKLHPGGQFFDPLGLA------ 204
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
D + LKV EIK+ RLAM +M F+ +A GK PL L
Sbjct: 205 ---EDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLANL 246
>gi|159475641|ref|XP_001695927.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
gi|12060444|dbj|BAB20613.1| CP26 [Chlamydomonas reinhardtii]
gi|158275487|gb|EDP01264.1| minor chlorophyll a-b binding protein of photosystem II
[Chlamydomonas reinhardtii]
Length = 289
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/198 (37%), Positives = 96/198 (48%), Gaps = 37/198 (18%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
PE+L+G L GDYG+DPLGLGKDP + YRE EL+H RWAM A GI + G
Sbjct: 72 PEYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 131
Query: 118 SGIPWFEAGAD------------PGAIA--PFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G WFE GA+ P I P +++ ++ LMG VE F+
Sbjct: 132 KGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVE------FYRRN 185
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+P ++ + YPGG FDPL LA D E L LKV E
Sbjct: 186 GTGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLAD---------DPEVLQELKVKE 235
Query: 224 IKHARLAMVAMLIFYFEA 241
IK+ RLAMV++L F ++
Sbjct: 236 IKNGRLAMVSVLGFAVQS 253
Score = 37.7 bits (86), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG----IPWFEAGADP 129
FDPLGL DP L+ + E+ +GR AM +V+G V +G W + ADP
Sbjct: 216 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADP 271
>gi|302762032|ref|XP_002964438.1| light-harvesting complex [Selaginella moellendorffii]
gi|300168167|gb|EFJ34771.1| light-harvesting complex [Selaginella moellendorffii]
Length = 248
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 120/249 (48%), Gaps = 39/249 (15%)
Query: 1 MAAATSGAVLN-GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKK-SWIPAVKG 58
MAA+T A + S+F++ + S L G+ V + + + KK W P
Sbjct: 1 MAASTMQASIGVSCPSTFLS--RSSSKLQRGSRAVAAPSFATGKFKVEAKKGEWCPG--- 55
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
L +P +L+GSLPGD GFDPLGL DPA LKWY +AEL +GRWAM V G+ + + +
Sbjct: 56 ---LASPGYLNGSLPGDNGFDPLGLAGDPANLKWYVQAELQNGRWAMVGVAGMLIPEVLT 112
Query: 119 GI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
I W++AG AP S +L + L+ +VE +RW D P S + +
Sbjct: 113 KIGVINAPLWYDAGKVE-YFAPAS--TLFVIEFLMFHYVEVRRWQDIKYPGSVNQD---- 165
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ ++ E GYPGG F+PL + K E+ + RLAM+
Sbjct: 166 --PIFKGYSLPPNEVGYPGG-IFNPLNFPAN-------------EEYKEKELANGRLAML 209
Query: 233 AMLIFYFEA 241
A L F ++
Sbjct: 210 AFLGFIIQS 218
>gi|297840405|ref|XP_002888084.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
gi|297333925|gb|EFH64343.1| hypothetical protein ARALYDRAFT_475174 [Arabidopsis lyrata subsp.
lyrata]
Length = 273
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/233 (34%), Positives = 114/233 (48%), Gaps = 49/233 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S KKS V K + P VK G N P W LDGSLPGDYGFDPLGL D
Sbjct: 31 SQKKSSFVV----KATATPPVKQGAN--RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SD 83
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGADPGA 131
P F+ +W E+I+GR+AM G +G+A + +PWF+ G P A
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPPETALPWFQTGVIPPA 143
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R D++NP S ++ E +G
Sbjct: 144 -GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNP 198
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 199 AYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Score = 38.9 bits (89), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
>gi|226856758|gb|ACO87356.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856760|gb|ACO87357.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856762|gb|ACO87358.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856764|gb|ACO87359.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856766|gb|ACO87360.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856768|gb|ACO87361.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856770|gb|ACO87362.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856774|gb|ACO87364.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856776|gb|ACO87365.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856778|gb|ACO87366.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856780|gb|ACO87367.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856784|gb|ACO87369.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856786|gb|ACO87370.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856788|gb|ACO87371.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856790|gb|ACO87372.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856792|gb|ACO87373.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856794|gb|ACO87374.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
gi|226856798|gb|ACO87376.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856800|gb|ACO87377.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856802|gb|ACO87378.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856804|gb|ACO87379.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
gi|226856806|gb|ACO87380.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856808|gb|ACO87381.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856810|gb|ACO87382.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856812|gb|ACO87383.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856814|gb|ACO87384.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856816|gb|ACO87385.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856818|gb|ACO87386.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856820|gb|ACO87387.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856822|gb|ACO87388.1| chloroplast chlorophyll a-b binding protein 4, partial [Altingia
chinensis]
gi|226856824|gb|ACO87389.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856826|gb|ACO87390.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856828|gb|ACO87391.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856830|gb|ACO87392.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
gi|226856832|gb|ACO87393.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
acalycina]
Length = 148
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 16/148 (10%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--- 120
+P +L+GSLPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 121 ---PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W++AG A S +L + +L +VE +RW D NP + +
Sbjct: 61 NVPKWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIF 111
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIK 205
+ ++ A E GYPGG F+PL A T++
Sbjct: 112 KQYSLAPHECGYPGG-IFNPLNFAPTLE 138
>gi|3789952|gb|AAC67557.1| chlorophyll a/b-binding protein presursor [Oryza sativa Japonica
Group]
Length = 244
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 108/214 (50%), Gaps = 38/214 (17%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R +++++V A K W+P L +P +L+GSLPGD GFDPLGL +DP L+W
Sbjct: 33 RAPTTRRNVRAEA---KGEWLPG------LPSPTYLNGSLPGDNGFDPLGLAEDPENLRW 83
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
+ +AEL++GRWAM V G+ + + + I W++AG A S +L + +
Sbjct: 84 FVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGK---ATYFASSNTLFVIEFI 140
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L +VE ++W D NP + + +++ + E GYPG F+PL T++
Sbjct: 141 LFHYVEIRQWQDIKNPGCVNQD------PIFKSYRLPSDECGYPGS-VFNPLNFEPTLE- 192
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
K E+ + RLAM+A L F +
Sbjct: 193 ------------AKEKELANGRLAMLAFLGFLVQ 214
>gi|118489937|gb|ABK96765.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 274
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 45/232 (19%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLI------NPEWLDGSLPGDYGFDPLGLGKDP 87
V+S K S VV A + P VK G + + +LDGSLPGD+GFDPLGL DP
Sbjct: 32 VSSRKSSFVVRA-----ASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDP 85
Query: 88 ----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGADPGAI 132
F+ KW E+I+GR+AM VG +G+A + +PWF G P A
Sbjct: 86 EGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPA- 144
Query: 133 APFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
+S+ +L ++ LMG+ E +R+ D+ P S ++ + E + +GE
Sbjct: 145 GTYSYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGF----EKYLGGSGEPA 200
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG F+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 201 YPGGPLFNPLGFGK---------DEKSLKDLKLKEVKNGRLAMLAILGYFVQ 243
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 200 AYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGV 249
>gi|170388|gb|AAA34140.1| chlorophyll a/b-binding protein [Solanum lycopersicum]
gi|225895|prf||1402358A photosystem I protein CAB
Length = 246
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/201 (36%), Positives = 100/201 (49%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 55 RPSYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME-------------- 160
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ ++ YPGG FDPL Y D K + LKV EIK+ RLA++
Sbjct: 161 ---------KDSEKKKYPGGA-FDPLG---------YSKDPAKFEELKVKEIKNGRLALL 201
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 202 AFVGFCVQQSAYPGTGPLENL 222
>gi|255077157|ref|XP_002502229.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226517494|gb|ACO63487.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 233
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 93/191 (48%), Gaps = 41/191 (21%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-GIP 121
+ P LDG+LPGD+GFDPLGLG DP LK+Y+EAEL++ RWAM AV GI + G P
Sbjct: 59 VAPAHLDGTLPGDFGFDPLGLGADPERLKYYQEAELMNARWAMMAVAGICTTEILGIGGP 118
Query: 122 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
W+EAGA A +LL Q +MG +E +R + V PW
Sbjct: 119 WYEAGA---AEYDLPINALLAVQFPVMGILELRRIRGWLATGKSGVNETFPW-------- 167
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
DP+ + G D++ + E+K+ RLAM+A + +A
Sbjct: 168 --------------DPMGMNG--------------DQMALKEVKNGRLAMIAFVGIVVQA 199
Query: 242 GQGKT-PLGAL 251
+T P+ AL
Sbjct: 200 IVYRTGPVAAL 210
>gi|297820242|ref|XP_002878004.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
gi|297323842|gb|EFH54263.1| hypothetical protein ARALYDRAFT_485905 [Arabidopsis lyrata subsp.
lyrata]
Length = 241
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 102/201 (50%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ P L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +KL+ LKV EIK+ RLA++
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALL 200
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENL 221
>gi|398313945|emb|CCI55399.1| PSI antenna protein Lhca4 [Marchantia polymorpha]
Length = 249
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 106/216 (49%), Gaps = 26/216 (12%)
Query: 26 ALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG---NLINPEWLDGSLPGDYGFDPLG 82
+ L+GT+ S+ V AA +S K G L +P +L+GSL GD GFDPLG
Sbjct: 19 SFLSGTSSTRFSRNVQVAAAPISSQSLKVEAKKGEWLPGLPSPAYLNGSLAGDNGFDPLG 78
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA--DPGAIAPFSFGS- 139
L +DPA L WY +AEL +GRWAM V G+ V + + I A D G + F+ S
Sbjct: 79 LAEDPAALNWYVQAELQNGRWAMLGVAGMLVPEVLTKIGLINAPLWYDAGKVEYFAPAST 138
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L + +L +VE +RW D P S S + P+ ++ + G+ GYPGG F+PL
Sbjct: 139 LFVIEFILFHYVEIRRWQDIKYPGSVSQD---PFFKS---YKLPPGDVGYPGG-IFNPLK 191
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
K EI + RLAM+A L
Sbjct: 192 FPAN-------------QEYKEKEIANGRLAMLAFL 214
>gi|116519125|gb|ABJ99591.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 115/236 (48%), Gaps = 45/236 (19%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYGFDPLGL 83
T +SS+K+ V K + P VK G + + +LDGSLPGD+GFDPLGL
Sbjct: 28 TRSFSSSRKASFVV----KAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL 83
Query: 84 GKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW---------SGIPWFEAGAD 128
DP F+ KW E+I+GR+AM V G + + +PWF+ G
Sbjct: 84 -SDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALPWFQTGVI 142
Query: 129 PGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
P A +S+ +L ++ LMG+ E +R+ D+ P S ++ + E F +
Sbjct: 143 PPA-GTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGF----EKFLGGS 197
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G+ YPGG F+PL D + LK+ E+K+ RLAM+A+L F+ +
Sbjct: 198 GDPAYPGGPIFNPLGFG---------KDERSMKELKLKEVKNGRLAMLAILGFFIQ 244
Score = 40.0 bits (92), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+ D
Sbjct: 199 DPAYPGGPIFNPLGFGKDERSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQNLLD 258
>gi|226856772|gb|ACO87363.1| chloroplast chlorophyll a-b binding protein 4, partial [Liquidambar
formosana]
Length = 148
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 85/148 (57%), Gaps = 16/148 (10%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--- 120
+P +L+GSLPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTTIGII 60
Query: 121 ---PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W++AG A S +L + +L +VE +RW D NP + +
Sbjct: 61 NVPKWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIF 111
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIK 205
+ ++ A E GYPGG F+PL A T++
Sbjct: 112 KQYSLAPHECGYPGG-IFNPLNFAPTLE 138
>gi|145078711|tpg|DAA05881.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Euglena gracilis]
Length = 642
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 86/258 (33%), Positives = 119/258 (46%), Gaps = 60/258 (23%)
Query: 8 AVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINP 65
A L G +F + A+ A + R +++ KS ++ P + W+ + G P
Sbjct: 353 AHLANPGVNFWTSYAPTLAMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGE----VP 408
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-- 121
+L G LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P
Sbjct: 409 SYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFG 468
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRW---VDFFNP 162
W++AGA +P I S + L +MG VE+ R+ V F
Sbjct: 469 EGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGR 528
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
E ++ YPGG FDPL LA D + L LKV
Sbjct: 529 ELDTL---------------------YPGGP-FDPLGLAN---------DPDALAELKVK 557
Query: 223 EIKHARLAMVAMLIFYFE 240
E+K+ RLAMVAML FY +
Sbjct: 558 ELKNGRLAMVAMLGFYVQ 575
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + GG PE+L G GDYGFD GL DP + YR+AEL +GRWAM
Sbjct: 158 PNRPKWLGPLSGGAV---PEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAML 214
Query: 107 AVVGIFVGQAWS---GIP-----WFEAGA---DPGAIAPFSFGSLLGTQLLLMGWVESKR 155
V+G + S G+P WF+ GA + G+I + L+ LL+ V
Sbjct: 215 GVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELV 274
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
+ FF E+ W E ++ YPGG FDPL L+ D
Sbjct: 275 F--FFAAET--------WREAGEGPLGKAQDKSYPGG-VFDPLGLS---------KDPAA 314
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
KV E+K+ RLAM+AML + +AG G++PL L
Sbjct: 315 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENL 351
Score = 44.3 bits (103), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG F DPL LA D + L LKV E+K+ RLAMVAML FY +
Sbjct: 73 YPGGPF-DPLGLAN---------DPDALAELKVKELKNGRLAMVAMLGFYVQ 114
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 69/172 (40%), Gaps = 27/172 (15%)
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE--- 124
LD PG FDPLGL DP L + EL +GR AM A++G +V + E
Sbjct: 69 LDTLYPGG-PFDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLT 127
Query: 125 -AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
ADP A FSF T M +W P +W P S A
Sbjct: 128 FHLADPSANNIFSF-----TSGFAMFAATGSKWYGPNRP-----KWLGPLSGGAVP-EYL 176
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
GE Y G FD LA D + R + AE+++ R AM+ +L
Sbjct: 177 KGE--YAGDYGFDTAGLAA---------DPKLFQRYRDAELQNGRWAMLGVL 217
>gi|194703906|gb|ACF86037.1| unknown [Zea mays]
gi|195613086|gb|ACG28373.1| chlorophyll a-b binding protein 4 [Zea mays]
gi|414870433|tpg|DAA48990.1| TPA: chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +LDGSL GD GFDPLGL +DP L+W+ +AEL++GRWAM V
Sbjct: 49 KGEWLPG------LPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 102
Query: 109 VGIFVGQAWS------GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + + W++AG S +L + +L +VE +RW D NP
Sbjct: 103 AGMLIPEVLTKAGLINAPQWYDAGKSEYFA---SSSTLFVVEFILFHYVEIRRWQDIKNP 159
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + ++++ E GYP G F+PL A T++ K
Sbjct: 160 GSVNQD------PIFKSYSLPPHECGYP-GSVFNPLNFAPTLE-------------AKEK 199
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
E+ + RLAM+A L F + GK P L
Sbjct: 200 ELANGRLAMLAFLGFLIQHNVTGKGPFDNL 229
>gi|195628270|gb|ACG35965.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 103/210 (49%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +LDGSL GD GFDPLGL +DP L+W+ +AEL++GRWAM V
Sbjct: 49 KGEWLPG------LPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 102
Query: 109 VGIFVGQAWS------GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + + W++AG S +L + +L +VE +RW D NP
Sbjct: 103 AGMLIPEVLTKAGLINAPQWYDAGKSEYFA---SSSTLFVVEFILFXYVEIRRWQDIKNP 159
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + ++++ E GYP G F+PL A T++ K
Sbjct: 160 GSVNQD------PIFKSYSLPPHECGYP-GSVFNPLNFAPTLE-------------AKEK 199
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
E+ + RLAM+A L F + GK P L
Sbjct: 200 ELANGRLAMLAFLGFLIQHNVTGKGPFDNL 229
>gi|307105262|gb|EFN53512.1| hypothetical protein CHLNCDRAFT_56266 [Chlorella variabilis]
Length = 276
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 93/295 (31%), Positives = 119/295 (40%), Gaps = 97/295 (32%)
Query: 21 GKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGG------------NLINPEWL 68
G + LL G T +K +V A+ P K S G G N P WL
Sbjct: 8 GSQGTKLLKGKG-ATKAKSAVKKASAPRKGSGTERSGGAGYRQYDGDALWLPNTSRPAWL 66
Query: 69 DGSLPGDYGFDPLGLGKDPAFLK------------------------------------- 91
DGSLPGD GFDPLGL K +L+
Sbjct: 67 DGSLPGDRGFDPLGLSKPVEYLQVDLDQLEQNNAVNKAGSVVGSFTPVIDEVSAVPLAPY 126
Query: 92 -------WYREAELIHGRWAMAAVVGIFVGQAWSGIPW-------FEAGADPGAIAPFSF 137
+RE ELIHGRWAM A +G V + +G W +++ G PFS
Sbjct: 127 SEVFGLQRFRENELIHGRWAMLACLGALVQEGVTGDSWVAAQTLVYDSPQYAGVELPFSI 186
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L +LMG VE R + +PE + YPGG FDP
Sbjct: 187 YNLAIANSVLMGGVELFRNGE-LDPEKRC----------------------YPGG-VFDP 222
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
L LA D+E+ D+L+ AEIKHARLAMV L + +A G+ LG+L
Sbjct: 223 LSLASD--------DSERTDKLREAEIKHARLAMVGFLGYTVQAWYTGEGALGSL 269
>gi|493723|emb|CAA45523.1| photosystem I light-harvesting chlorophyll a/b-binding protein
[Nicotiana tabacum]
Length = 245
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 97/188 (51%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ P+ L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 55 RPPYLDGSAPGDFGFDPLGLGEVPSNLERYKESELIHCRWAMLAVPGILVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 167
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +K + LKV EIK+ RLA++
Sbjct: 168 ----------------YPGGA-FDPLG---------YSKDPKKFEELKVKEIKNGRLALL 201
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 202 AFVGFCVQ 209
>gi|159480944|ref|XP_001698542.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
gi|158282282|gb|EDP08035.1| regulatory chlorophyll a/b binding protein [Chlamydomonas
reinhardtii]
Length = 237
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 92/196 (46%), Gaps = 29/196 (14%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPA-----FL--KWYREAELIHGRWAMAAVVGIFVGQAW- 117
+LDG+LPGD GFDPLGL DP F+ +W AE++HGRWAM G +
Sbjct: 19 SYLDGTLPGDMGFDPLGL-FDPTNGSAGFMSQRWLHTAEVVHGRWAMLGAAGCLAPEYLA 77
Query: 118 --------SGIPWFEAGADPGAIAPFSFG----SLLGTQLLLMGWVESKRWVDFFNPESQ 165
+G+ WF+ G P A F +G +L Q+ LMG VES RW + NP S
Sbjct: 78 HEKVIPKATGLLWFKTGFLPPVSAGFDYGLPVTALFLIQMGLMGTVESLRWAELSNPGSL 137
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ P G YPGG F+PL L T + + +EI+
Sbjct: 138 ASNPLVPQPLARLIGTTRLGGGAYPGGLMFNPLGLGAT--------RPAVMREYQQSEIR 189
Query: 226 HARLAMVAMLIFYFEA 241
H RLAMVA L + +A
Sbjct: 190 HGRLAMVACLGYAAQA 205
>gi|125561651|gb|EAZ07099.1| hypothetical protein OsI_29348 [Oryza sativa Indica Group]
Length = 244
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 107/214 (50%), Gaps = 38/214 (17%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R +++++V A K W+P L +P +L+GSLPGD GFDPLGL +DP L+W
Sbjct: 33 RAPTTRRNVRAEA---KGEWLPG------LPSPTYLNGSLPGDNGFDPLGLAEDPENLRW 83
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
+ +AEL++GRWAM V G+ + + + I W++AG A S +L + +
Sbjct: 84 FVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGK---ATYFASSSTLFVIEFI 140
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L VE +RW D NP + + ++++ E GYPG F+PL T++
Sbjct: 141 LFHSVEIRRWQDIKNPGCVNQD------PIFKSYSLPPHECGYPGS-VFNPLNFEPTLEA 193
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
K E+ + RLAM+A L F +
Sbjct: 194 -------------KEKELANGRLAMLAFLGFLVQ 214
>gi|224131950|ref|XP_002321218.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
gi|118485656|gb|ABK94678.1| unknown [Populus trichocarpa]
gi|222861991|gb|EEE99533.1| light-harvesting complex I protein Lhca3 [Populus trichocarpa]
Length = 274
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 116/232 (50%), Gaps = 45/232 (19%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLI------NPEWLDGSLPGDYGFDPLGLGKDP 87
V+S K S VV A + P VK G + + +LDGSLPGD+GFDPLGL DP
Sbjct: 32 VSSRKSSFVVRA-----ASTPPVKQGNRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDP 85
Query: 88 ----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGADPGAI 132
F+ KW E+I+GR+AM VG +G+A + +PWF G P A
Sbjct: 86 EGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPPETALPWFRTGVIPPA- 144
Query: 133 APFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
+S+ +L ++ LMG+ E +R D+ P S ++ + E + +GE
Sbjct: 145 GTYSYWADPYTLFVFEMALMGFAEHRRLQDWAKPGSMGKQYFLGF----EKYLGGSGEPA 200
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG F+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 201 YPGGPLFNPLGFGK---------DEKSLKDLKLKEVKNGRLAMLAILGYFVQ 243
Score = 38.5 bits (88), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 200 AYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQGLVTGV 249
>gi|357495587|ref|XP_003618082.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519417|gb|AET01041.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 557
Score = 97.1 bits (240), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 47/233 (20%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYGFDPLGLGKDP 87
+S K S VV A P K KGG N + +LDGSLPGD+GFDPLGL DP
Sbjct: 316 SSRKGSFVVKAAAPVK------KGGANRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDP 368
Query: 88 ----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGAI 132
F+ +W E+I+GR+AM G + A + +PWF+ G P A
Sbjct: 369 EGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA- 427
Query: 133 APFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
+++ +L ++ MG+ E +R D++NP S ++ E +GE
Sbjct: 428 GTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLGGSGEPA 483
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGG F+PL D + L LK+ E+K+ RLAM+A+L ++ +A
Sbjct: 484 YPGGPIFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQA 527
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ----- 115
+LDGSLPGD+GFDPLGL DP F+ +W E+I+GR+AM G +
Sbjct: 69 YLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 127
Query: 116 ----AWSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
A + +PWF+ G P A +++ +L ++ MG+ E +R+ D++NP S
Sbjct: 128 GLIPAETALPWFQTGVIPPA-GTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGK 186
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG F+PL D + L LK+ E+K+
Sbjct: 187 QYFL----GLEKGLGGSGEPAYPGGPIFNPLGFG---------KDEKSLKELKLKEVKNG 233
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 234 RLAMLAILGYFIQA 247
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 205 PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGV 252
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 485 PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGV 532
>gi|226856782|gb|ACO87368.1| chloroplast chlorophyll a-b binding protein 4, partial
[Semiliquidambar cathayensis]
Length = 148
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/148 (39%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--- 120
+P +L+GSLPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I
Sbjct: 1 SPNYLNGSLPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGII 60
Query: 121 ---PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
W++AG A S +L + +L +VE +RW D NP +
Sbjct: 61 NVPKWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVN------QGPIF 111
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIK 205
+ ++ A E GYPGG F+PL A T++
Sbjct: 112 KQYSLAPHECGYPGG-IFNPLNFAPTLE 138
>gi|357495589|ref|XP_003618083.1| Chlorophyll a-b binding protein [Medicago truncatula]
gi|355519418|gb|AET01042.1| Chlorophyll a-b binding protein [Medicago truncatula]
Length = 573
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 47/233 (20%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYGFDPLGLGKDP 87
+S K S VV A P K KGG N + +LDGSLPGD+GFDPLGL DP
Sbjct: 332 SSRKGSFVVKAAAPVK------KGGANRQLWFASKQSLSYLDGSLPGDFGFDPLGL-SDP 384
Query: 88 ----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGAI 132
F+ +W E+I+GR+AM G + A + +PWF+ G P A
Sbjct: 385 EGVGGFIEPEWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA- 443
Query: 133 APFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188
+++ +L ++ MG+ E +R D++NP S ++ E +GE
Sbjct: 444 GTYNYWADNYTLFVMEMAFMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLGGSGEPA 499
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGG F+PL D + L LK+ E+K+ RLAM+A+L ++ +A
Sbjct: 500 YPGGPIFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQA 543
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ----- 115
+LDGSLPGD+GFDPLGL DP F+ +W E+I+GR+AM G +
Sbjct: 69 YLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 127
Query: 116 ----AWSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
A + +PWF+ G P A +++ +L ++ MG+ E +R+ D++NP S
Sbjct: 128 GLIPAETALPWFQTGVIPPA-GTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGK 186
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG F+PL D + L LK+ E+K+
Sbjct: 187 QYFL----GLEKGLGGSGEPAYPGGPIFNPLGFG---------KDEKSLKELKLKEVKNG 233
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 234 RLAMLAILGYFIQA 247
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 205 PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGV 252
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 501 PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGV 548
>gi|116519121|gb|ABJ99590.1| type III chlorophyll a/b-binding protein [Lycoris aurea]
Length = 275
Score = 96.7 bits (239), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 75/236 (31%), Positives = 116/236 (49%), Gaps = 45/236 (19%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYGFDPLGL 83
+ +SS+K+ V K + P VK G + + +LDGSLPGD+GFDPLGL
Sbjct: 28 SRSFSSSRKASFVV----KAASTPPVKQGADRQLWFASKQSLSYLDGSLPGDFGFDPLGL 83
Query: 84 GKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW---------SGIPWFEAGAD 128
DP F+ KW E+I+GR+AM V G + + +PWF+ G
Sbjct: 84 -SDPEGTGGFIEPKWLAYGEIINGRYAMLGVAGAIAPEILGKLGLIPPETALPWFQTGVI 142
Query: 129 PGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
P A +S+ +L ++ LMG+ E +R+ D+ P S ++ + E F +
Sbjct: 143 PPA-GTYSYWADPYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFLGF----EKFLGGS 197
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G+ YPGG F+PL D + + LK+ E+K+ RLAM+A+L F+ +
Sbjct: 198 GDPAYPGGPIFNPLGFG---------KDEKSMKELKLKEVKNGRLAMLAILGFFIQ 244
Score = 40.0 bits (92), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+
Sbjct: 199 DPAYPGGPIFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGFFIQGLVTGVGPFQ 254
>gi|384248209|gb|EIE21694.1| hypothetical protein COCSUDRAFT_67011 [Coccomyxa subellipsoidea
C-169]
Length = 316
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 121/303 (39%), Gaps = 102/303 (33%)
Query: 19 NGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVK------------GGG------ 60
NG + + GT ++ + V A P K +P GGG
Sbjct: 24 NGSRLNALFKGGTKQLKKATAPVKRAVATPIKKAVPKTSVGTQRVGKRKGSGGGDALWLP 83
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGK----------------------------------- 85
N P WLDGSLPGD GFDPLGL
Sbjct: 84 NTERPAWLDGSLPGDRGFDPLGLSSPQDYLQVGIDQLDQNKAVNKAGAIVGKFAAPKTKI 143
Query: 86 --------DPAF-LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP------- 129
D F L+ +RE ELIHGRWAM +G+ V +A +G+ W +AG
Sbjct: 144 SDTALQPYDEVFGLQRFRETELIHGRWAMLGALGVLVAEASTGVSWVDAGKVELDGAQYL 203
Query: 130 GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 189
G PFS L+ + +L+G E R N E + P +R Y
Sbjct: 204 GFSLPFSISQLVWIEAILVGGAEIYR-----NRELE------PQARI------------Y 240
Query: 190 PGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 248
PGG +FDPL LA D + +LK AE+KH RLAM+A L F +A G+ L
Sbjct: 241 PGG-YFDPLGLA--------TGDDARAFKLKEAELKHGRLAMIAFLGFGVQALATGQGAL 291
Query: 249 GAL 251
G+L
Sbjct: 292 GSL 294
>gi|87313239|gb|ABD37916.1| light-harvesting chlorophyll-a/b binding protein Lhcb5
[Chlamydomonas incerta]
Length = 259
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 96/198 (48%), Gaps = 37/198 (18%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P++L+G L GDYG+DPLGLGKDP + YRE EL+H RWAM A GI + G
Sbjct: 42 PDYLNGELAGDYGYDPLGLGKDPETVAKYRENELLHARWAMLAAAGILIPEGLQANGANI 101
Query: 118 SGIPWFEAGAD------------PGAIA--PFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G WFE GA+ P I P +++ ++ LMG VE F+
Sbjct: 102 KGGTWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAVEVGLMGAVE------FYRRN 155
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+P ++ + YPGG FDPL LA D E L LKV E
Sbjct: 156 GSGPAGYSPGIGKFDSSVFDGLDPLYPGGP-FDPLGLA---------DDPEVLQELKVKE 205
Query: 224 IKHARLAMVAMLIFYFEA 241
IK+ RLAMV++L F ++
Sbjct: 206 IKNGRLAMVSVLGFAVQS 223
Score = 37.0 bits (84), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG----IPWFEAGADP 129
FDPLGL DP L+ + E+ +GR AM +V+G V +G W + ADP
Sbjct: 186 FDPLGLADDPEVLQELKVKEIKNGRLAMVSVLGFAVQSYVTGEGPYANWTKHVADP 241
>gi|510388|emb|CAA43633.1| light harvesting chlorophyll a /b binding protein of PSII [Euglena
gracilis]
Length = 1055
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 79/214 (36%), Positives = 100/214 (46%), Gaps = 52/214 (24%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ GG PE+L G LPGDYG+D GLG DPA L YR A++IHGRWAM
Sbjct: 840 PDRVKWL----GGFTGFVPEYLTGELPGDYGWDTAGLGADPAKLARYRVAQVIHGRWAML 895
Query: 107 AVVGIFVGQA---WSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLL 146
V+G + + W G+P WF+AGA PG I S + L+
Sbjct: 896 GVLGCWFPECINRWGGVPFGEPVWFKAGAQIFSEDGLNYLGQPGLIHAQSVVLTFLSTLV 955
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LMG VE+ R S + A + YPGG FDPL LA
Sbjct: 956 LMGAVEAYR------------------SAGSVGDFGADLDPLYPGGP-FDPLGLAD---- 992
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
D E LKV E+K+ RLAMVA+ F+ +
Sbjct: 993 -----DPEAFLELKVKEVKNGRLAMVAIFGFFVQ 1021
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 115/249 (46%), Gaps = 54/249 (21%)
Query: 14 GSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEWLDGS 71
G +F + A+ A + R +++ KS ++ P + W+ + G P +L G
Sbjct: 563 GVNFWTSYAPTLAMFAASGRKSAAPKSDNLSQWYGPDRAKWLGPLTGE----VPSYLTGE 618
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP------WF 123
LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P W+
Sbjct: 619 LPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWY 678
Query: 124 EAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 171
+AGA +P I S + L +MG VE+ R+ + ++
Sbjct: 679 KAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDSGRELDTL- 737
Query: 172 PWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAM 231
YPGG FDPL LA D + L LKV E+K+ RLAM
Sbjct: 738 -----------------YPGGP-FDPLGLAN---------DPDALAELKVKELKNGRLAM 770
Query: 232 VAMLIFYFE 240
VAML FY +
Sbjct: 771 VAMLGFYVQ 779
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 95/199 (47%), Gaps = 54/199 (27%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P
Sbjct: 151 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 210
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRW---VDFFN 161
W++AGA +P I S + L +MG VE+ R+ V F
Sbjct: 211 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 270
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
E ++ YPGG FDPL LA D + L LKV
Sbjct: 271 RELDTL---------------------YPGGP-FDPLGLAN---------DPDALAELKV 299
Query: 222 AEIKHARLAMVAMLIFYFE 240
E+K+ RLAMVAML FY +
Sbjct: 300 KELKNGRLAMVAMLGFYVQ 318
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 103/217 (47%), Gaps = 35/217 (16%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + GG PE+L G GDYGFD GL DP + YR+AEL +GRWAM
Sbjct: 362 PNRPKWLGPLSGGAV---PEYLKGEYAGDYGFDTAGLAADPKLFQRYRDAELQNGRWAML 418
Query: 107 AVVGIFVGQAWS---GIP-----WFEAGA---DPGAIAPFSFGSLLGTQLLLMGWVESKR 155
V+G + S G+P WF+ GA + G+I + L+ LL+ V
Sbjct: 419 GVLGCLAPEVLSNVFGVPYPEPVWFKTGATILNGGSIDYLANPKLIHASNLLLTLVLELV 478
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
+ FF E+ W E ++ YPGG FDPL L+ D
Sbjct: 479 F--FFAAET--------WREAGEGPLGKAQDKSYPGG-VFDPLGLS---------KDPAA 518
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
KV E+K+ RLAM+AML + +AG G++PL L
Sbjct: 519 FAEAKVKEVKNGRLAMLAMLGLFVQAGVTGQSPLENL 555
>gi|255646873|gb|ACU23907.1| unknown [Glycine max]
Length = 276
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 115/234 (49%), Gaps = 50/234 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S K S +V K + IP VK G + P W LDGSLPGDYGFDPLGL D
Sbjct: 35 SRKASFLV-----KAAAIPPVKQGSD--RPLWFASKQSLSYLDGSLPGDYGFDPLGL-SD 86
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGADPGA 131
P F+ KW E+I+GR+AM VG +G+A + +PWF G P A
Sbjct: 87 PEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPQETALPWFRTGVFPPA 146
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R+ D+ P S ++ E +GE
Sbjct: 147 -GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGLGGSGEP 201
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ A
Sbjct: 202 AYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNGRLAMLAILGYFVRA 246
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVRALVTGV 251
>gi|312282193|dbj|BAJ33962.1| unnamed protein product [Thellungiella halophila]
Length = 241
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 101/201 (50%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ P L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPAYLDGSAPGDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +K + LKV EIK+ RLA++
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPKKFEELKVKEIKNGRLALL 200
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENL 221
>gi|87313163|gb|ABD37878.1| light-harvesting chlorophyll-a/b binding protein Lhca1 [Mesostigma
viride]
gi|145079752|tpg|DAA05929.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Mesostigma viride]
Length = 225
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 97/208 (46%), Gaps = 51/208 (24%)
Query: 37 SKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREA 96
K V + +K W P G + P LDGSLPGD+G+DPLGL KDP L YREA
Sbjct: 26 KKTDSRVTCMAERKLWAP-----GLVKAPAHLDGSLPGDFGYDPLGLAKDPVSLARYREA 80
Query: 97 ELIHGRWAMAAVVGI----FVGQ-AW-SGIPWFEAGADP---GAIAPFSFGSLLGTQLLL 147
E+++GRWAM V G+ VGQ W S W G P G P+ FG++L +
Sbjct: 81 EVMNGRWAMLGVAGMLAPELVGQGTWLSAQDWAVTGGKPTYLGNELPYGFGTVLAVEFFC 140
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
+ WVE R ++ P R YPGG FDPL G KD
Sbjct: 141 LSWVEISRGLE-----------KDPMKRI------------YPGGA-FDPL---GFGKDE 173
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAML 235
V KV E+++ RLAMVA +
Sbjct: 174 VN----------KVKELRNGRLAMVAFV 191
>gi|157965835|gb|ABW06954.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 545
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 95/199 (47%), Gaps = 54/199 (27%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P
Sbjct: 114 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 173
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRW---VDFFN 161
W++AGA +P I S + L +MG VE+ R+ V F
Sbjct: 174 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 233
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
E ++ YPGG FDPL LA D + L LKV
Sbjct: 234 RELDTL---------------------YPGGP-FDPLGLAN---------DPDALAELKV 262
Query: 222 AEIKHARLAMVAMLIFYFE 240
E+K+ RLAMVAML FY +
Sbjct: 263 KELKNGRLAMVAMLGFYVQ 281
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/197 (37%), Positives = 92/197 (46%), Gaps = 55/197 (27%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--- 121
P +L G LPGDYG+D GLG DP L YREAE+IH RWAM + G +G+P
Sbjct: 349 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLVTPELLAG---NGVPFGE 405
Query: 122 ---WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRW---VDFFNPE 163
W++AGA +P I S + L +MG VE+ R+ V F E
Sbjct: 406 GAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFGRE 465
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
++ YPGG FDPL LA D + L LKV E
Sbjct: 466 LDTL---------------------YPGGP-FDPLGLAN---------DPDALAELKVKE 494
Query: 224 IKHARLAMVAMLIFYFE 240
+K+ RLAMVAML FY +
Sbjct: 495 LKNGRLAMVAMLGFYVQ 511
Score = 44.3 bits (103), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 10/52 (19%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG F DPL LA D + L LKV E+K+ RLAMVAML FY +
Sbjct: 5 YPGGPF-DPLGLAN---------DPDALAELKVKELKNGRLAMVAMLGFYVQ 46
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE----AGADPGAIA 133
FDPLGL DP L + EL +GR AM A++G +V + E ADP +
Sbjct: 10 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNN 69
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVD----FFNPESQSVEWATPWSRTAENFANATGEQGY 189
FSF S G + +S D ++ P+ +W P T E + TGE
Sbjct: 70 IFSFTS--GFAMFAASGRKSAPKSDNLSQWYGPD--RAKWLGPL--TGEVPSYLTGE--L 121
Query: 190 PGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
PG +D L D L R + AE+ HAR AM+ L
Sbjct: 122 PGDYGWDTAGLGS---------DPTTLARYREAEVIHARWAMLGAL 158
>gi|414590634|tpg|DAA41205.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
gi|414590635|tpg|DAA41206.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 196
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 20/161 (12%)
Query: 19 NGGKKSQALLAGTNRVTSSKKS-----VVVAALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
NG + S + L G + ++ + V AA P + W P P WLDGSLP
Sbjct: 20 NGQRASSSFLGGKTLLRQAEAARPSFAVRAAADPNRPIWFPGST------PPPWLDGSLP 73
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP------WFEAGA 127
GD+GFDP GLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 74 GDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGE 133
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+L +L+L+GW E +RW D P S + +
Sbjct: 134 QQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGSVNTD 171
>gi|226498298|ref|NP_001150371.1| LOC100284001 [Zea mays]
gi|195638726|gb|ACG38831.1| chlorophyll a-b binding protein 4 [Zea mays]
Length = 247
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 102/210 (48%), Gaps = 36/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +LDGSL GD GFDPLGL +DP L+W+ +AEL++GRWAM V
Sbjct: 49 KGEWLPG------LPSPSYLDGSLAGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 102
Query: 109 VGIFVGQAWS------GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + + W++A S +L + +L +VE +RW D NP
Sbjct: 103 AGMLIPEVLTKAGLINAPQWYDASKSEYFA---SSSTLFVVEFILFHYVEIRRWQDIKNP 159
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + ++++ E GYP G F+PL A T++ K
Sbjct: 160 GSVNQD------PIFKSYSLPPHECGYP-GSVFNPLNFAPTLE-------------AKEK 199
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
E+ + RLAM+A L F + GK P L
Sbjct: 200 ELANGRLAMLAFLGFLIQHNVTGKGPFDNL 229
>gi|414590633|tpg|DAA41204.1| TPA: hypothetical protein ZEAMMB73_510089 [Zea mays]
Length = 199
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 58/161 (36%), Positives = 80/161 (49%), Gaps = 20/161 (12%)
Query: 19 NGGKKSQALLAGTNRVTSSKKS-----VVVAALPPKKSWIPAVKGGGNLINPEWLDGSLP 73
NG + S + L G + ++ + V AA P + W P P WLDGSLP
Sbjct: 20 NGQRASSSFLGGKTLLRQAEAARPSFAVRAAADPNRPIWFPGST------PPPWLDGSLP 73
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP------WFEAGA 127
GD+GFDP GLG DP L+W +AEL+H RWAM GIF+ + + I W+ AG
Sbjct: 74 GDFGFDPWGLGSDPESLRWNVQAELVHCRWAMLGAAGIFIPEFLTKIGVLNTPFWYTAGE 133
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
+L +L+L+GW E +RW D P S + +
Sbjct: 134 QQYFT---DTTTLFIIELILIGWAEGRRWADIIKPGSVNTD 171
>gi|87313167|gb|ABD37880.1| light-harvesting chlorophyll-a/b binding protein Lhca3 [Mesostigma
viride]
Length = 300
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 42/198 (21%)
Query: 67 WLDGSLPGDYGFDPLGLGK--------DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--- 115
+LDGS PGD+G+DPLGL K DP KW +E+IH R+AM + G+ +
Sbjct: 88 YLDGSKPGDFGYDPLGLYKPEGAGGFIDP---KWLAYSEVIHCRYAMLGMAGMVAPEILG 144
Query: 116 ------AWSGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
A +G+ WF+ G P +P +L +++LM + E +RW D+ +P
Sbjct: 145 KLGLIPAETGLVWFKTGVIPSEGQYDYWASPL---ALFWIEVVLMQFAELRRWQDYRHPG 201
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
SQS ++ E F +G+ YPGG F+ L Y D + ++ LK+ E
Sbjct: 202 SQSKQYFL----GLEQFFGGSGDPSYPGGAIFNFLG---------YGKDEKSMNDLKLKE 248
Query: 224 IKHARLAMVAMLIFYFEA 241
+K+ RLAMVA L F+ +A
Sbjct: 249 LKNGRLAMVATLGFFIQA 266
>gi|388515199|gb|AFK45661.1| unknown [Medicago truncatula]
Length = 277
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ----- 115
+LDGSLPGD+GFDPLGL DP F+ +W E+I+GR+AM G +
Sbjct: 69 YLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKA 127
Query: 116 ----AWSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
A + +PWF+ G P A +++ +L ++ MG+ E +R+ D++NP S
Sbjct: 128 GLIPAETALPWFQTGVIPPA-GTYNYWADNYTLFVMEMAFMGFAEHRRFQDWYNPGSMGK 186
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG F+PL D + L LK+ E+K+
Sbjct: 187 QYFL----GLEKGLGGSGEPAYPGGPIFNPLGFG---------KDEKSLKELKLKEVKNG 233
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 234 RLAMLAILGYFIQA 247
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 205 PGGPIFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQALVTGV 252
>gi|357122389|ref|XP_003562898.1| PREDICTED: chlorophyll a-b binding protein of LHCII type III,
chloroplastic-like [Brachypodium distachyon]
Length = 267
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 95/211 (45%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W G+
Sbjct: 65 TPSYLSGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 124
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG+Q+LLMG VE R
Sbjct: 125 EFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGSQVLLMGLVEGFRI------- 177
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 178 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 213
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|116791821|gb|ABK26121.1| unknown [Picea sitchensis]
gi|224284036|gb|ACN39756.1| unknown [Picea sitchensis]
gi|224284482|gb|ACN39975.1| unknown [Picea sitchensis]
gi|224284909|gb|ACN40184.1| unknown [Picea sitchensis]
gi|224285218|gb|ACN40335.1| unknown [Picea sitchensis]
gi|224285824|gb|ACN40626.1| unknown [Picea sitchensis]
Length = 289
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 51/274 (18%)
Query: 1 MAAATSGAVLN-GLGSSFINGGKKSQALLAGTNRV------TSSKKSVVVAALPPKKSWI 53
MA T+ A+++ L ++ + ++ Q LL G + SS+ S A+ + S
Sbjct: 1 MAGITAKALISPSLSATGGDVARRQQLLLGGKALILPPYFNQSSESSRTSFAVRSQASSG 60
Query: 54 PAVKGGGNLI------NPEWLDGSLPGDYGFDPLGLGKDP----AFLK--WYREAELIHG 101
VK G + + +LDGSLPGDYGFDPLGL DP F++ W E+I+G
Sbjct: 61 KPVKQGDRQLWFASKQSLSYLDGSLPGDYGFDPLGL-MDPEGPGGFIEPGWLAYGEIING 119
Query: 102 RWAMAAVVGIFVGQAW---------SGIPWFEAGADPGA------IAPFSFGSLLGTQLL 146
R+AM VG + + +PWF G P A PF +L ++
Sbjct: 120 RYAMLGAVGAIAPEILGKLGLIPQETALPWFRTGVIPPAGTYDYWADPF---TLFVLEMA 176
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LMG+ E +R D+ P S S ++ + E + +G YPGG F+PL
Sbjct: 177 LMGFAEHRRLQDYRYPGSMSKQYFLGF----EKYLGGSGNPSYPGGPLFNPLGFG----- 227
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
D + + LK+ E+K+ RLAM+A++ ++ +
Sbjct: 228 ----KDEKSMKELKLKEVKNGRLAMLAIVGYFIQ 257
Score = 41.6 bits (96), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
S PG F+PLG GKD +K + E+ +GR AM A+VG F+ +G+ F+ D
Sbjct: 214 SYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAIVGYFIQGLVTGVGPFQNLLD 271
>gi|326514018|dbj|BAJ92159.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGD+GFDPLGL DP F+ +W E+ +GR AM VVG+ +A
Sbjct: 60 YLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ IPWF+AGA P A P+ +L ++ L+G+ E +R D++NP S
Sbjct: 119 GLVPPETAIPWFQAGAIPPAGTYQYWADPY---TLFVFEMALIGFAEHRRLQDWYNPGSM 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E + +G+ YPGG F+PL G +++ LK+ EIK
Sbjct: 176 GKQYFL----GLEKYLGGSGDPAYPGGPIFNPL--------GFGTKSEKEMKELKLKEIK 223
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM+A L +A
Sbjct: 224 NGRLAMLAFLGMSLQA 239
>gi|380447755|gb|AFD54060.1| morphogenesis protein [Leymus secalinus]
Length = 268
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 99/190 (52%), Gaps = 37/190 (19%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGD+GFDPLGL DP F+ +W E+ +GR AM VVG+ +A
Sbjct: 59 YLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 117
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ IPWF+AGA P A P+ +L ++ L+G+ E +R D++NP S
Sbjct: 118 GLVPSETAIPWFQAGAIPPAGTYQYWADPY---TLFVFEMALIGFAEHRRLQDWYNPGSM 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E + +G+ YPGG F+PL G +++ LK+ EIK
Sbjct: 175 GKQYFL----GLEKYLGGSGDPAYPGGPIFNPL--------GFGTKSEKEMKELKLKEIK 222
Query: 226 HARLAMVAML 235
+ RLAM+A L
Sbjct: 223 NGRLAMLAFL 232
>gi|145078761|tpg|DAA05883.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Euglena gracilis]
Length = 367
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/199 (37%), Positives = 95/199 (47%), Gaps = 54/199 (27%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P
Sbjct: 62 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 121
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRW---VDFFN 161
W++AGA +P I S + L +MG VE+ R+ V F
Sbjct: 122 GEGAVWYKAGAQIFSADGLNYLGNPSLIHAQSVVLTFLSTLAIMGAVEAYRYGGGVGDFG 181
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
E ++ YPGG FDPL LA D + L LKV
Sbjct: 182 RELDTL---------------------YPGGP-FDPLGLAN---------DPDALAELKV 210
Query: 222 AEIKHARLAMVAMLIFYFE 240
E+K+ RLAMVAML FY +
Sbjct: 211 KELKNGRLAMVAMLGFYVQ 229
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G LPGDYG+D GLG DP L YREAE+IH RWAM +G+ + A +G+P
Sbjct: 297 PSYLTGELPGDYGWDTAGLGSDPTTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPF 356
Query: 122 -----WFEAGA 127
W++AGA
Sbjct: 357 GEGAVWYKAGA 367
Score = 40.0 bits (92), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 70/166 (42%), Gaps = 25/166 (15%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE----AGADPGAIA 133
FDPLGL DP L + EL +GR AM A++G +V + E ADP +
Sbjct: 193 FDPLGLANDPDALAELKVKELKNGRLAMVAMLGFYVQPLVTKAGPVENLTFHLADPSSNN 252
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVD----FFNPESQSVEWATPWSRTAENFANATGEQGY 189
FSF S G + +S D ++ P+ +W P T E + TGE
Sbjct: 253 IFSFTS--GFAMFAASGRKSAPKSDNLSQWYGPDR--AKWLGPL--TGEVPSYLTGE--L 304
Query: 190 PGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
PG +D L D L R + AE+ HAR AM+ L
Sbjct: 305 PGDYGWDTAGLGS---------DPTTLARYREAEVIHARWAMLGAL 341
>gi|145079550|tpg|DAA05918.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Mesostigma viride]
Length = 278
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 42/198 (21%)
Query: 67 WLDGSLPGDYGFDPLGLGK--------DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--- 115
+LDGS PGD+G+DPLGL K DP KW +E+IH R+AM + G+ +
Sbjct: 66 YLDGSKPGDFGYDPLGLYKPEGAGGFIDP---KWLAYSEVIHCRYAMLGMAGMVAPEILG 122
Query: 116 ------AWSGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
A +G+ WF+ G P +P +L +++LM + E +RW D+ +P
Sbjct: 123 KLGLIPAETGLVWFKTGVIPSEGQYDYWASPL---ALFWIEVVLMQFAELRRWQDYRHPG 179
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
SQS ++ E F +G+ YPGG F+ L Y D + ++ LK+ E
Sbjct: 180 SQSKQYFL----GLEQFFGGSGDPSYPGGAIFNFLG---------YGKDEKSMNDLKLKE 226
Query: 224 IKHARLAMVAMLIFYFEA 241
+K+ RLAMVA L F+ +A
Sbjct: 227 LKNGRLAMVATLGFFIQA 244
>gi|356554088|ref|XP_003545381.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 1 [Glycine max]
gi|356554090|ref|XP_003545382.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
isoform 2 [Glycine max]
Length = 276
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA 116
+LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG +G+A
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 117 -----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ +PWF G P A +++ +L ++ LMG+ E +R+ D+ P S
Sbjct: 127 GLIPQETALPWFRTGVFPPA-GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG FF+PL D + L LK+ E+K+
Sbjct: 186 QYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 233 RLAMLAILGYFVQA 246
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
>gi|255640167|gb|ACU20374.1| unknown [Glycine max]
Length = 276
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA 116
+LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG +G+A
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 117 -----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ +PWF G P A +++ +L ++ LMG+ E +R+ D+ P S
Sbjct: 127 GLIPQETALPWFRTGVFPPA-GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG FF+PL D + L LK+ E+K+
Sbjct: 186 QYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 233 RLAMLAILGYFVQA 246
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
>gi|449452104|ref|XP_004143800.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
gi|449525097|ref|XP_004169556.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Cucumis sativus]
Length = 246
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 100/201 (49%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ P L+ ++E+ELIH RWAM AV GI V +A W
Sbjct: 56 RPPYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 115
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 116 KAQEWAAVPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSME-KDPEKKK------ 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D EKL KV EIK+ RLA++
Sbjct: 169 ----------------YPGGA-FDPLG---------YSKDPEKLKEYKVKEIKNGRLALL 202
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 203 AFVGFCVQQSAYPGTGPLENL 223
>gi|356501755|ref|XP_003519689.1| PREDICTED: chlorophyll a-b binding protein 3, chloroplastic-like
[Glycine max]
Length = 276
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA 116
+LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG +G+A
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 117 -----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ +PWF G P A +++ +L ++ LMG+ E +R+ D+ P S
Sbjct: 127 GLIPQETALPWFRTGVFPPA-GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG FF+PL D + L LK+ E+K+
Sbjct: 186 QYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 233 RLAMLAILGYFVQA 246
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 202 AYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
>gi|145346713|ref|XP_001417828.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144578056|gb|ABO96121.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 185
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/173 (38%), Positives = 92/173 (53%), Gaps = 40/173 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--W 122
P LDG++ GDYGFDPLGLG DP LK+Y+EAEL++ RWAM AV GI VG +GI W
Sbjct: 10 PAHLDGTVAGDYGFDPLGLGSDPTRLKYYQEAELMNARWAMMAVAGI-VGTEIAGIEPRW 68
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
+EAG + P +LL QL +MG++E+KR W T + N
Sbjct: 69 WEAGTEDYGFPP---QALLAVQLPVMGYLENKR--------------IQGWLATGSSGVN 111
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
T +P FDP+ + K +++K+ EIK+ R AM+A +
Sbjct: 112 ET----FP----FDPMGMG------------SKDEKMKLKEIKNGRAAMIAFV 144
>gi|407971012|ref|NP_001234032.1| chlorophyll a-b binding protein 6A, chloroplastic [Solanum
lycopersicum]
gi|115764|sp|P12360.1|CB11_SOLLC RecName: Full=Chlorophyll a-b binding protein 6A, chloroplastic;
AltName: Full=LHCI type I CAB-6A; AltName:
Full=Light-harvesting complex I 26 kDa protein; Flags:
Precursor
gi|170494|gb|AAA34186.1| chlorophyll a/b binding protein precursor [Solanum lycopersicum]
Length = 246
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 95/188 (50%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFD LGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 55 RPSYLDGSAPGDFGFDSLGLGEVPANLERYKESELIHCRWAMLAVPGIIVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++
Sbjct: 115 KAQEWAAIPGGQATYLGQPVPWGTLPTILAIEFLAIAFVEHQRSME-------------- 160
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ ++ YPGG FDPL Y D K + LKV EIK+ RLA++
Sbjct: 161 ---------KDSEKKKYPGGA-FDPLG---------YSKDPAKFEELKVKEIKNGRLALL 201
Query: 233 AMLIFYFE 240
A++ F +
Sbjct: 202 AIVGFCVQ 209
Score = 38.5 bits (88), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA + + E+ +GR A+ A+VG V Q+
Sbjct: 173 FDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQS 211
>gi|268612160|pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612178|pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
gi|268612196|pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 102/194 (52%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA 116
+LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG +G+A
Sbjct: 68 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKA 126
Query: 117 -----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ +PWF G P A +++ +L ++ LMG+ E +R+ D+ P S
Sbjct: 127 GLIPQETALPWFRTGFIPPA-GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGK 185
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +GE YPGG FF+PL D + L LK+ E+K+
Sbjct: 186 QYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 233 RLAMLAILGYFVQA 246
Score = 39.3 bits (90), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
>gi|4139222|gb|AAD03734.1| light harvesting complex I protein precursor [Chlamydomonas
reinhardtii]
gi|40714519|dbj|BAD06923.1| light-harvesting chlorophyll-a/b protein of photosystem I
[Chlamydomonas reinhardtii]
Length = 228
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 90/198 (45%), Gaps = 46/198 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGK+PA LK + E+E+IHGRWAM V G + W++
Sbjct: 46 PAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYD 105
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M E +R
Sbjct: 106 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR-------------------- 145
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
G YPGG F DPL A D+ K LK+ EIK+ RLAMVA L
Sbjct: 146 ------GDAGGVVYPGGAF-DPLGFA---------KDSSKSGELKLKEIKNGRLAMVAFL 189
Query: 236 IFYFE-AGQGKTPLGALG 252
F + A GK P+ ALG
Sbjct: 190 GFVAQHAATGKGPIAALG 207
>gi|414876522|tpg|DAA53653.1| TPA: hypothetical protein ZEAMMB73_781826 [Zea mays]
Length = 136
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 46/53 (86%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115
+ P LPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIF+GQ
Sbjct: 80 VTPPPRLCRLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFMGQ 132
>gi|18125|emb|CAA46235.1| light harvesting complex protein I-20 [Chlamydomonas reinhardtii]
Length = 224
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 90/198 (45%), Gaps = 46/198 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGK+PA LK + E+E+IHGRWAM V G + W++
Sbjct: 42 PAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYD 101
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M E +R
Sbjct: 102 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR-------------------- 141
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
G YPGG F DPL A D+ K LK+ EIK+ RLAMVA L
Sbjct: 142 ------GDAGGVVYPGGAF-DPLGFA---------KDSSKSGELKLKEIKNGRLAMVAFL 185
Query: 236 IFYFE-AGQGKTPLGALG 252
F + A GK P+ ALG
Sbjct: 186 GFVAQHAATGKGPIAALG 203
>gi|307106432|gb|EFN54678.1| hypothetical protein CHLNCDRAFT_31627 [Chlorella variabilis]
Length = 246
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 102/218 (46%), Gaps = 48/218 (22%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLG-KDPAFLKWYR 94
+ SVVVAA P +W P P+ LDGS+ GDYGFDPL LG KD LK+YR
Sbjct: 21 TRASSVVVAAARP--TWYPGA------TPPKHLDGSMLGDYGFDPLRLGSKDKDVLKYYR 72
Query: 95 EAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESK 154
E EL +GRWAMAAV GI PW+EAGA + F +L+ +++ +E
Sbjct: 73 EGELTNGRWAMAAVAGILFTDLVGLGPWWEAGAK--VESSFDLKTLIIVEIVTFAILEGF 130
Query: 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTE 214
R + TGE G FDPL +
Sbjct: 131 RAKAY----------------------EKTGETGLGPFAPFDPLNM-------------- 154
Query: 215 KLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ D ++ E+K+ RLAM+A+L F +A QGK P+ L
Sbjct: 155 RSDETRLKELKNGRLAMLAILGFSSQAAVQGKGPIECL 192
>gi|157965841|gb|ABW06957.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 562
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 73/221 (33%), Positives = 99/221 (44%), Gaps = 55/221 (24%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W P + P WL G PGD GFDPLGL KDP R++E+ HGRWAM +
Sbjct: 360 RPTWFPGAEA------PAWLTGEYPGDRGFDPLGLAKDPEDFAKNRDSEVYHGRWAMLGL 413
Query: 109 VGIFVGQAWSGI------PWFEAGA-----------DPGAIAPFSFGSLLGTQLLLMGWV 151
VG V + + + W+EAGA +P + + + T LLL +
Sbjct: 414 VGCLVPEVFGNLGIAQLPAWYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPI 473
Query: 152 ESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIP 211
E+ RW PE++S E T YPGG FDPL L +
Sbjct: 474 EAWRWNGQIAPEAKSAERTT-----------------YPGGP-FDPLKLGAS-------- 507
Query: 212 DTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LK+ EIK+ RLAMV M F+ ++ G+ PL L
Sbjct: 508 -----PELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANL 543
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 99/221 (44%), Gaps = 55/221 (24%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W P + P WL G PGD GFDP GL KDPA +R++E+ HGRWAM +
Sbjct: 151 RPTWFPGAEA------PTWLTGEYPGDRGFDPFGLAKDPADFAKFRDSEVFHGRWAMLGL 204
Query: 109 VGIFVGQAWSGI------PWFEAGA-----------DPGAIAPFSFGSLLGTQLLLMGWV 151
VG V + + + W++A +P + + + + LLLMG V
Sbjct: 205 VGCLVPEVFGNLGIAQLPAWYDAATVANTSNLDYLGNPNLVHASNVSFIALSTLLLMGPV 264
Query: 152 ESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIP 211
E+ RW E++S E T YPGG FDPL L +
Sbjct: 265 EAWRWNGALASEAKSAERTT-----------------YPGGP-FDPLKLGAS-------- 298
Query: 212 DTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LK+ EIK+ RLAMV M F+ ++ G+ PL L
Sbjct: 299 -----PELKLKEIKNGRLAMVGMFGFWAQSYVTGEGPLANL 334
Score = 44.7 bits (104), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 43/142 (30%)
Query: 122 WFEAGA-----------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWA 170
W+EAGA +P + + + T LLL +E+ RW P+++S EW
Sbjct: 15 WYEAGAVANTGSLDYLGNPNLVHASNVPLIFFTTLLLFLPIEAWRWNGQIAPDAKSKEWT 74
Query: 171 TPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLA 230
T YPGG F DPL L + LK+ EIK+ RLA
Sbjct: 75 T-----------------YPGGPF-DPLKLGAS-------------PELKLKEIKNGRLA 103
Query: 231 MVAMLIFYFEAG-QGKTPLGAL 251
MV M F+ ++ G+ PL L
Sbjct: 104 MVGMFGFWAQSYVTGEGPLANL 125
>gi|168049224|ref|XP_001777064.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671629|gb|EDQ58178.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGDYGFDPLGL DP F+ +W AE+I+GR+AM G +
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 118 ------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ IPWF++G P + +S+ +L ++ LMG+ E +R D++ P S
Sbjct: 75 GLIPQETAIPWFQSGVIP-PVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGK 133
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E F +G YPGG F+ L K+ L LKV E+K+
Sbjct: 134 QYFL----GLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE---------LQELKVKEVKNG 180
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 181 RLAMMAVLGYFTQA 194
>gi|20269804|gb|AAM18057.1|AF495473_1 major light-harvesting complex II protein m1 [Chlamydomonas
reinhardtii]
gi|15430558|dbj|BAB64414.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|15430566|dbj|BAB64418.1| light-harvesting chlorophyll-a/b binding protein LhcII-4
[Chlamydomonas reinhardtii]
gi|27542565|gb|AAO16493.1| light-harvesting complex II protein [Chlamydomonas reinhardtii]
Length = 256
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 96/207 (46%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G+P
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++LGTQ+LLMG +E R P +
Sbjct: 118 GEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNG--GPLGE 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ ++ YPGG FDPL LA D + LKV EIK
Sbjct: 176 GL------------------DKLYPGGS-FDPLGLAD---------DPDTFAELKVKEIK 207
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|168049170|ref|XP_001777037.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671602|gb|EDQ58151.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 242
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGDYGFDPLGL DP F+ +W AE+I+GR+AM G +
Sbjct: 34 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 92
Query: 118 ------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ IPWF++G P + +S+ +L ++ LMG+ E +R D++ P S
Sbjct: 93 GLIPQETAIPWFQSGVIP-PVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGK 151
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E F +G YPGG F+ L K+ L LKV E+K+
Sbjct: 152 QYFL----GLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE---------LQELKVKEVKNG 198
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 199 RLAMMAVLGYFTQA 212
>gi|115793|sp|P27523.1|CB23_HORVU RecName: Full=Chlorophyll a-b binding protein of LHCII type III,
chloroplastic; Short=CAB; Flags: Precursor
gi|19023|emb|CAA44881.1| type III LHCII CAB precursor protein [Hordeum vulgare]
Length = 268
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 75/211 (35%), Positives = 95/211 (45%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L+G PGDYG+D GL DP R E+IHGRWAM +G V Q W G+
Sbjct: 66 TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGV 125
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q+LLMG VE R
Sbjct: 126 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI------- 178
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 179 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 214
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|225436257|ref|XP_002273201.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic [Vitis
vinifera]
Length = 274
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 38/193 (19%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDGSLPGDYGFDPLGL DP F+ +W E+I+GR+AM VG +
Sbjct: 65 YLDGSLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRYAMLGAVGAIAPEILGKL 123
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ +PWF+ G P A P+ +L ++ LMG+ E +R+ D+ NP S
Sbjct: 124 GLIPPETALPWFKTGVFPPAGTYNYWADPY---TLFVFEMALMGFAEHRRFQDWANPGSM 180
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E + +G+ YPGG F+PL D + L LK+ E+K
Sbjct: 181 GKQYFL----GLEKYLGGSGDPAYPGGPLFNPLGFGK---------DEKSLKDLKLKEVK 227
Query: 226 HARLAMVAMLIFY 238
+ RLAM+A+L ++
Sbjct: 228 NGRLAMLAILGYF 240
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
D + PG F+PLG GKD LK + E+ +GR AM A++G F +G+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFAQGPVTGV 248
>gi|168065932|ref|XP_001784899.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663529|gb|EDQ50288.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 224
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 34/194 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGDYGFDPLGL DP F+ +W AE+I+GR+AM G +
Sbjct: 16 YLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEVLGRI 74
Query: 118 ------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ IPWF++G P + +S+ +L ++ LMG+ E +R D++ P S
Sbjct: 75 GLIPQETAIPWFQSGVIP-PVGNYSYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGK 133
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E F +G YPGG F+ L K+ L LKV E+K+
Sbjct: 134 QYFL----GLEKFLGGSGNPAYPGGPIFNFLGFGKNEKE---------LQELKVKEVKNG 180
Query: 228 RLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 181 RLAMMAVLGYFTQA 194
>gi|255070015|ref|XP_002507089.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226522364|gb|ACO68347.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 227
Score = 94.0 bits (232), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/233 (32%), Positives = 107/233 (45%), Gaps = 49/233 (21%)
Query: 26 ALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
+L AG T + ++ + +W+P P +LDGS+P DYGFDPLGLGK
Sbjct: 15 SLFAGRRLATQTTNGTSKVSM--RATWMPGSA------PPSYLDGSMPCDYGFDPLGLGK 66
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP-----GAIAPFSFGSL 140
+P L ++EAELIH RWAM V G + +GI W EA G PF ++
Sbjct: 67 EPDNLARFQEAELIHARWAMLGVSGAAGAEIITGINWVEAPVQSQQTYLGNTIPFPLPAI 126
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
++ +M +VESKR + ++ YPGG FDP
Sbjct: 127 AAIEVFVMAYVESKRGSE-----------------------TDRSKRMYPGGA-FDP--- 159
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM--LIFYFEAGQGKTPLGAL 251
AG K D EKL R E+ + R+AM+A +I +A + P+ AL
Sbjct: 160 AGFSKGA----DFEKLKR---KELANGRVAMLAFAGIIGEAQANNLEGPVAAL 205
>gi|159484394|ref|XP_001700243.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158272559|gb|EDO98358.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 266
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 96/207 (46%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G+P
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++LGTQ+LLMG +E R P +
Sbjct: 118 GEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSILAILGTQVLLMGAIEGYRVNG--GPLGE 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ ++ YPGG FDPL LA D + LKV EIK
Sbjct: 176 GL------------------DKLYPGGS-FDPLGLAD---------DPDTFAELKVKEIK 207
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|326510901|dbj|BAJ91798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 269
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGD+GF+PLGL DP F+ +W E+ +GR AM VVG+ +A
Sbjct: 60 YLDGTLPGDFGFNPLGL-SDPEGTGGFIEPRWLAYGEIFNGRTAMMGVVGMIAPEALGKV 118
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ IPWF+AGA P A P+ +L ++ L+G+ E +R D++NP S
Sbjct: 119 GLVPPETAIPWFQAGAIPPAGTYQYWADPY---TLFVFEMALIGFAEHRRLQDWYNPGSM 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E + +G+ YPGG F+PL G +++ LK+ EIK
Sbjct: 176 GKQYFL----GLEKYLGGSGDPAYPGGPIFNPL--------GFGTKSEKEMKELKLKEIK 223
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM+A L +A
Sbjct: 224 NGRLAMLAFLGMSLQA 239
>gi|302854015|ref|XP_002958519.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
gi|300256166|gb|EFJ40439.1| hypothetical protein VOLCADRAFT_110088 [Volvox carteri f.
nagariensis]
Length = 270
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 100/220 (45%), Gaps = 55/220 (25%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + G P +L G PGDYG+D GL DP K YRE ELIH RWAM
Sbjct: 56 PERALWLGPLSGSA----PSYLTGEFPGDYGWDSAGLSSDPETFKRYRELELIHARWAML 111
Query: 107 AVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLL 147
+G + A +G P WF+AGA +PG + S + L Q++L
Sbjct: 112 GALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNPGLVHAQSILATLACQVIL 171
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MG +E R P + + ++ +PGG +FDPL LA
Sbjct: 172 MGAIEGFRVNG--GPAGEGL------------------DKLHPGGPWFDPLALA------ 205
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA---GQG 244
D + LKV EIK+ RLAM +M F+ +A GQG
Sbjct: 206 ---EDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGQG 242
>gi|307103588|gb|EFN51847.1| hypothetical protein CHLNCDRAFT_59790 [Chlorella variabilis]
Length = 251
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 79/250 (31%), Positives = 109/250 (43%), Gaps = 57/250 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
S+ + G+ +VT ++ V P + W+ G P +L G PGDYG+D GL
Sbjct: 14 SRPAVRGSRQVT---RASVEFYGPDRAKWLGPFSDGAV---PSYLKGEFPGDYGWDSAGL 67
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS---------GIPWFEAGA------- 127
DP YRE E+IH RWAM +G + WF+AGA
Sbjct: 68 SADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFSDDG 127
Query: 128 -----DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
+P I S ++L TQL++MG E+ R+ E
Sbjct: 128 LNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYA-------------------GEGPVE 168
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA- 241
+G+ YPGG FDPL LA D + L LKV E+K+ RLAM +M F+ +A
Sbjct: 169 TSGDSLYPGGA-FDPLGLAD---------DPDTLAELKVKELKNGRLAMFSMFGFFVQAL 218
Query: 242 GQGKTPLGAL 251
GK+PL L
Sbjct: 219 ITGKSPLENL 228
>gi|72580631|gb|AAR19267.2| chlorophyll a/b binding protein presusor [Oryza sativa Japonica
Group]
Length = 244
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 38/214 (17%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R +++++V A K W+P L +P +L+GSLPGD GFDPLGL +DP L+W
Sbjct: 33 RAPTTRRNVRAEA---KGEWLPG------LPSPTYLNGSLPGDNGFDPLGLAEDPENLRW 83
Query: 93 YREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLL 146
+ +AEL++GRWAM V G+ + + + I W++AG A S +L + +
Sbjct: 84 FVQAELVNGRWAMLGVAGMLLPEVLTKIGLIDAPQWYDAGK---ATYFASSSTLFVIEFI 140
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
L +VE +RW D NP + + ++++ E GYP PL T++
Sbjct: 141 LFHYVEIRRWQDIKNPGCVNQD------PIFKSYSLPPHECGYPAAS-STPLNFEPTLEA 193
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
K E+ + RLAM+A L F +
Sbjct: 194 -------------KEKELANGRLAMLAFLGFLVQ 214
>gi|87313233|gb|ABD37912.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Chlamydomonas incerta]
Length = 232
Score = 93.6 bits (231), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 97/214 (45%), Gaps = 52/214 (24%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+ + G P +L G PGDYG+D GL DP K YRE ELIH RWAM
Sbjct: 49 PDRGLWLGPLSG----TTPAYLTGEFPGDYGWDSAGLSADPETFKRYRELELIHARWAML 104
Query: 107 AVVGIFVGQ--AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLL 147
+G + A +G P WF+AGA + G I S + L Q++L
Sbjct: 105 GALGCVTPELLAKNGTPIAEPVWFKAGAQIFQEGGLDYLGNAGLIHAQSILATLAVQVIL 164
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MG +E R P + + ++ +PGG+FFDPL LA
Sbjct: 165 MGAIEGYRVNG--GPAGEGL------------------DKLHPGGQFFDPLGLA------ 198
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D + LKV EIK+ RLAM +M F+ +A
Sbjct: 199 ---EDPDAFAELKVKEIKNGRLAMFSMFGFFVQA 229
>gi|87313223|gb|ABD37908.1| light-harvesting chlorophyll-a/b binding protein Lhca6
[Chlamydomonas incerta]
Length = 192
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 73/198 (36%), Positives = 89/198 (44%), Gaps = 46/198 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGKDPA LK + E+E+IHGRWAM V G + W++
Sbjct: 10 PAWLPEDLPGNYGFDPLSLGKDPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYD 69
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M E +R
Sbjct: 70 APLWAVNGGKATWFGIDVPFDLNTLLAFEFVAMAAAEGQR-------------------- 109
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
G YPGG F DPL A D K LK+ E+K+ RLAMVA L
Sbjct: 110 ------GDAGGVVYPGGAF-DPLGFA---------KDASKSGELKLKEVKNGRLAMVAFL 153
Query: 236 IFYFE-AGQGKTPLGALG 252
F + A GK P+ ALG
Sbjct: 154 GFVAQHAATGKGPIAALG 171
>gi|412991092|emb|CCO15937.1| putative lycopene beta cyclase [Bathycoccus prasinos]
Length = 1593
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 82/231 (35%), Positives = 110/231 (47%), Gaps = 31/231 (13%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
S+A L G +R+ KS++ LP G N+I P L G LPGD GFDPL
Sbjct: 1385 SEADLYGNDRIKFLPKSII--NLP-----------GENVIVPPHLTGGLPGDIGFDPLKF 1431
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLL-G 142
G LK +RE ELI+GRWAM A +G+ + + + G D + + G
Sbjct: 1432 GAQSDLLK-FRERELINGRWAMLAAIGVLLPEFLFKFGLYGEGTDQHWWSTKIIHDVADG 1490
Query: 143 TQLLLMGWVESKRWVDFFNPESQ-SVEWATPWSRTA----ENFANATGEQGYPGGKFFDP 197
QL MG W F+ P + + RT E F +T ++ YPGG+ FDP
Sbjct: 1491 WQLTYMG--SEIPWGLFWLPIIHLPLMFVAEMLRTGKFEIERF--STLDKLYPGGRLFDP 1546
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKTPL 248
L LA + E++ LK EI+H RLAM+A IF F+ GK PL
Sbjct: 1547 LGLAANQSE-------EEVRILKAIEIQHCRLAMLAFSIFCFQGATGKGPL 1590
>gi|168053612|ref|XP_001779229.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669328|gb|EDQ55917.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 94/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG---QAWSGIP 121
P +L G PGDYG+D GL DP R ELIHGRWAM +G Q +S +
Sbjct: 65 PSYLKGEFPGDYGWDTAGLSADPESFARNRALELIHGRWAMLGALGCITPELLQKYSRVT 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ Q++LMG VE+ R
Sbjct: 125 LKEPVWFKAGAQIFSDGGLDYLGNPNLIHAQSILAVWAVQVVLMGAVEAYR--------- 175
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N GE G YPGGK+FDPL LA D E L LKV
Sbjct: 176 -------------TNGLPGVGEGGDLYPGGKYFDPLGLAD---------DPETLAELKVK 213
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
E+K+ RLAM +M F+ +A GK PL L
Sbjct: 214 ELKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|3928891|gb|AAC79711.1| chlorophyll a/b binding protein [Acetabularia acetabulum]
Length = 251
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 77/247 (31%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 15 SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPG 74
S + G AL+ G RV S ++ V P + W+ G P +L G PG
Sbjct: 6 QSVLVGATAKTALVKGNKRV--SVQAAVEWYGPDRAKWLGPYSDGAV---PSYLTGEFPG 60
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAG 126
DYG+D GL DP K YRE ELIH RWAM +G + G ++ WF AG
Sbjct: 61 DYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAG 120
Query: 127 AD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
A P I S G+++ +Q++LMG +E R P + ++ P
Sbjct: 121 AQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GPAGEGLDPLYP-- 176
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
G+ FDPL LA D + LK+ EIK+ RLAM +M
Sbjct: 177 -----------------GESFDPLGLAD---------DPDTFAELKIKEIKNGRLAMFSM 210
Query: 235 LIFYFEA 241
FY +A
Sbjct: 211 FGFYVQA 217
>gi|384253873|gb|EIE27347.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 330
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 98/201 (48%), Gaps = 43/201 (21%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L+G+L GDYG+DPLGLGKD A ++ YR ELIH RWAM A GI + G A
Sbjct: 113 PTYLNGTLAGDYGYDPLGLGKDTATVEKYRAYELIHARWAMLAAAGIIIPEGLQANGAAI 172
Query: 118 SGIPWFEAGAD------------PGAIA--PFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G WFE GA+ P I P ++ ++ L+G VE R
Sbjct: 173 KGGTWFETGAEMLNGGTLNYFAVPWGIINNPLPLFLVVVIEVALLGAVERYR-------- 224
Query: 164 SQSVEWATPWSRTAENFANATG---EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLK 220
QS E +S F ++ + YPGG FDPL LA D E LK
Sbjct: 225 -QSGEGPPGYSPGVGKFDSSIFSGLDNLYPGGP-FDPLGLA---------DDPETFAELK 273
Query: 221 VAEIKHARLAMVAMLIFYFEA 241
V EIK+ RLA++++L F ++
Sbjct: 274 VKEIKNGRLALISVLGFAVQS 294
>gi|302835678|ref|XP_002949400.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
gi|300265227|gb|EFJ49419.1| hypothetical protein VOLCADRAFT_104309 [Volvox carteri f.
nagariensis]
Length = 286
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 93/198 (46%), Gaps = 37/198 (18%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L+G L GDYG+DPLGLGKD + YRE EL+H RWAM A GI + G
Sbjct: 69 PAYLNGELAGDYGYDPLGLGKDTETVAKYREYELLHARWAMLAAAGILIPEGLQANGANI 128
Query: 118 SGIPWFEAGAD------------PGAIA--PFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G WFE GA+ P I P +++ ++ LMG VE F+
Sbjct: 129 KGGVWFETGAEMLNGGTLNYFAVPWGIVSNPLPLFAVIAIEVGLMGAVE------FYRRN 182
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+P ++ + YPGG FDPL LA D E LKV E
Sbjct: 183 GTGPAGYSPGIGKFDSSVFEGLDSIYPGGP-FDPLGLAD---------DPEVFQELKVKE 232
Query: 224 IKHARLAMVAMLIFYFEA 241
IK+ RLAMV++L F ++
Sbjct: 233 IKNGRLAMVSVLAFAIQS 250
>gi|302833824|ref|XP_002948475.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
gi|300266162|gb|EFJ50350.1| hypothetical protein VOLCADRAFT_73821 [Volvox carteri f.
nagariensis]
Length = 257
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 96/207 (46%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G+P
Sbjct: 58 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 117
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++LGTQ++LMG +E R P +
Sbjct: 118 GESVWFKAGAQIFQEGGLDYLGNPSLVHAQSILAILGTQVILMGAIEGYRVNG--GPLGE 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ ++ YPGG FDPL LA D + LKV EIK
Sbjct: 176 GL------------------DKLYPGGS-FDPLGLAD---------DPDTFAELKVKEIK 207
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 208 NGRLAMFSMFGFFVQAIVTGKGPLQNL 234
>gi|145079882|tpg|DAA05946.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca1 [Micromonas sp. CCMP490]
Length = 223
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 95/195 (48%), Gaps = 41/195 (21%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P L G+LP DYGFDPLGLGK+PA L ++EAE+IH RWAM V G +A +G+ W E
Sbjct: 47 PAHLTGTLPCDYGFDPLGLGKEPANLARFQEAEIIHSRWAMLGVAGAAGQEAITGVTWIE 106
Query: 125 AGADP-----GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
A GA +PF ++ ++ +M +VE +R + P R
Sbjct: 107 APVQDSQTYLGAESPFPLPVVVAIEVFVMAFVEQQRSNE-----------KDPAKRL--- 152
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM--LIF 237
YPGG FDP AG K + + LK EI + R+AM+A LI
Sbjct: 153 ---------YPGGA-FDP---AGFSKGADF-------ETLKKKEIANGRVAMLAFAGLIG 192
Query: 238 YFEAGQGKTPLGALG 252
+A + PL ALG
Sbjct: 193 QAQATNLEGPLSALG 207
>gi|303280461|ref|XP_003059523.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226459359|gb|EEH56655.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 235
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 116/243 (47%), Gaps = 60/243 (24%)
Query: 5 TSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLIN 64
T+ + + G S+F G ++ A +A SS+ S+ V A ++ WI + +
Sbjct: 10 TAVSAVRGARSAF--AGSRA-AFVAAPAMKVSSRASLTVKA--QRELWIK-----DSTVA 59
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-GIPWF 123
P LDG+LPGD+GFDPLGLG DP LK+Y+EAEL++ RWAM AV GI + G W+
Sbjct: 60 PAHLDGTLPGDFGFDPLGLGADPQRLKYYQEAELMNARWAMMAVAGITATEVLGIGPAWY 119
Query: 124 EAGADPGAIAPFSFG--SLLGTQLLLMGWVESKR---WVDFFNPESQSVEWATPWSRTAE 178
+ GA A F F +LL Q +MG +E KR W+D
Sbjct: 120 DVGA-----ADFDFPPLALLAIQFPVMGILELKRIRGWLD-------------------- 154
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
TG+ G +DP+ G DG + V EIK+ RLAM+A +
Sbjct: 155 -----TGKSGVVDQFPWDPM---GMNSDG-----------MAVKEIKNGRLAMIAFVGIV 195
Query: 239 FEA 241
+A
Sbjct: 196 VQA 198
>gi|145350546|ref|XP_001419664.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144579896|gb|ABO97957.1| chlorophyll a/b binding, possibly photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 235
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 94/214 (43%), Gaps = 38/214 (17%)
Query: 32 NRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
+ +S+ V V+A + W P +L DGSLPGDYGFDPL L DP +
Sbjct: 19 TKTRASRGPVAVSANADRPVWYPGKAPAAHL------DGSLPGDYGFDPLSLSADPEMRQ 72
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSF----GSLL 141
W +AEL H RWAM V G + + I W +A A + + G+L
Sbjct: 73 WMVQAELQHARWAMLGVAGCVAPELLTKIGVADLPNWVDA-------ATYQYWAPGGTLF 125
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
Q+ + W E +RW D NP S + + N + + GYP G FD A
Sbjct: 126 FIQMAMFNWAEIRRWQDMKNPGSVNTD-----PLFGYNSNDTNTDVGYPKG-LFDKFGWA 179
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
D + LK+ EIK+ RLAM+A L
Sbjct: 180 ---------KDEKTTAELKLKEIKNGRLAMLAFL 204
>gi|398313939|emb|CCI55396.1| PSI antenna protein Lhca1 [Marchantia polymorpha]
Length = 243
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 119/254 (46%), Gaps = 58/254 (22%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAG--TNRVTSSKKSVVVAALPPKKSWIPAVKG 58
MAAAT V GL + + G + +G ++ T S S V + W+P
Sbjct: 1 MAAATMACV--GLSAPALLSGAQRTKFFSGHVSSLSTVSNGSRVSMS----SEWMPGQP- 53
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
P +LDGS PGD+GFDPLGL + P Y+E+ELIH RWAM AV G+ + +A
Sbjct: 54 -----RPAYLDGSSPGDFGFDPLGLAEVPENFARYKESELIHCRWAMLAVPGVLIPEALG 108
Query: 119 GIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSV 167
W A A PG A P +G+L L + L + +VE+KR + P+ +
Sbjct: 109 LGNWVSAQQWAATPGGQATYLGNPVPWGTLPIILAIEFLAVAFVEAKRGEE---PDHE-- 163
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ YPGG FDPL A D +KL+ K+ E+K+
Sbjct: 164 ------------------KRKYPGGP-FDPLGFAK---------DPKKLEEYKLKELKNG 195
Query: 228 RLAMVAMLIFYFEA 241
RLA++A L F +A
Sbjct: 196 RLALLAFLGFSVQA 209
>gi|224109746|ref|XP_002315298.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|118489209|gb|ABK96411.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222864338|gb|EEF01469.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 243
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 102/217 (47%), Gaps = 62/217 (28%)
Query: 30 GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF 89
GT+RVT S +W+P P +LDGS PGD+GFDPL LG+ P
Sbjct: 37 GTSRVTMSA------------NWMPGQP------RPPYLDGSAPGDFGFDPLRLGEVPEN 78
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL- 140
L+ Y+E+ELIH RWAM AV GI V +A W +A A PG A P +G+L
Sbjct: 79 LERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQEWAATPGGQATYLGQPVPWGTLP 138
Query: 141 --LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
L + + + +VE +R + T ++ YPGG FDPL
Sbjct: 139 IILAIEFVAIAFVEHQR-----------------------SMEKDTEKKKYPGGA-FDPL 174
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
Y D +K + KV EIK+ RLA++A +
Sbjct: 175 G---------YSKDPQKFEEYKVKEIKNGRLALLAFV 202
Score = 40.0 bits (92), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP + Y+ E+ +GR A+ A VGI V Q
Sbjct: 171 FDPLGYSKDPQKFEEYKVKEIKNGRLALLAFVGICVQQT 209
>gi|412988961|emb|CCO15552.1| predicted protein [Bathycoccus prasinos]
Length = 231
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/177 (36%), Positives = 90/177 (50%), Gaps = 40/177 (22%)
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
N+ P++LDG++ GDYGFDPLGLG DP LK+Y+EAEL++ RWAM AV GI +A GI
Sbjct: 52 NIKTPDYLDGTIAGDYGFDPLGLGSDPERLKYYQEAELMNARWAMMAVAGICTTEAL-GI 110
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG + F + L MG++E+KR T W T +
Sbjct: 111 QSKWYMAGQEDYG---FPINAQLAVLFPTMGFLETKR--------------ITGWLATGK 153
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ N T +P FDPL + D +K+ EIK+ R AM+A +
Sbjct: 154 SGINET----FP----FDPLGMGA------------DSDSMKLKEIKNGRAAMIAFV 190
>gi|145079374|tpg|DAA05912.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Acetabularia acetabulum]
Length = 229
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 93/191 (48%), Gaps = 42/191 (21%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF- 123
P LD ++PGDYGFDPL LG + L WYREAEL +GRWAM AV GI A+ G+P F
Sbjct: 52 PAHLDSTMPGDYGFDPLRLGTNTELLPWYREAELTNGRWAMMAVAGILFTDAF-GLPKFW 110
Query: 124 EAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
AGA+ AI F L+ ++ LM +E +R+ +
Sbjct: 111 LAGAEKYAIG---FAPLVAIEIALMAVLEYQRFKGW----------------------KE 145
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG- 242
TG+ G+ FDPL +A D + EIK+ RLAM+A L F +A
Sbjct: 146 TGKSGFLAFFPFDPLNMAS--------------DEMAFKEIKNGRLAMIAFLGFCSQAAV 191
Query: 243 QGKTPLGALGL 253
+G P+ L +
Sbjct: 192 RGMGPIECLKM 202
>gi|49388156|dbj|BAD25284.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|49388341|dbj|BAD25451.1| putative chlorophyll a/b-binding protein type III precursor [Oryza
sativa Japonica Group]
gi|125538483|gb|EAY84878.1| hypothetical protein OsI_06243 [Oryza sativa Indica Group]
gi|125581168|gb|EAZ22099.1| hypothetical protein OsJ_05758 [Oryza sativa Japonica Group]
gi|215678980|dbj|BAG96410.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679371|dbj|BAG96511.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215686386|dbj|BAG87647.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737482|dbj|BAG96612.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737505|dbj|BAG96635.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737512|dbj|BAG96642.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737560|dbj|BAG96690.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737570|dbj|BAG96700.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737580|dbj|BAG96710.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737621|dbj|BAG96751.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737634|dbj|BAG96764.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737653|dbj|BAG96783.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737729|dbj|BAG96859.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737785|dbj|BAG96915.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765646|dbj|BAG87343.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767462|dbj|BAG99690.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 269
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 101/196 (51%), Gaps = 37/196 (18%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ----- 115
+LDG+LPGD+GFDPLGL DP F+ +W E+ +GR AM VVG+ +
Sbjct: 60 YLDGTLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEVFNGRTAMMGVVGMVAPELLGKL 118
Query: 116 ----AWSGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
A + IPWF+ G P A P+ +L +L L+G+ E +R+ D++ P S
Sbjct: 119 GLVPAETAIPWFQTGVIPPAGTYTYWADPY---TLFVFELALVGFAEHRRFQDWYTPGSM 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E + +GE YPGG F+PL GT + ++ LK+ EIK
Sbjct: 176 GKQYFL----GLEKYLAGSGEPAYPGGPLFNPLGF-GTKSEA-------EMKELKLKEIK 223
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM+A L F +A
Sbjct: 224 NGRLAMLAFLGFSVQA 239
>gi|307103850|gb|EFN52107.1| hypothetical protein CHLNCDRAFT_32733 [Chlorella variabilis]
Length = 255
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/208 (37%), Positives = 100/208 (48%), Gaps = 48/208 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP K +R E+IH RWAM +G V + +SG+
Sbjct: 54 PAYLTGEFPGDYGWDTSGLSADPETFKRFRTVEVIHARWAMLGALGCIFPEVLEKYSGVE 113
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +PG + S + L Q+LLMG VE R
Sbjct: 114 FGEAVWFKAGAQIFADGGLNYLGNPGLVHAQSIVATLVVQVLLMGAVEIYR--------- 164
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ E + + +N YPGG FDPL LA PDT L LKV E+
Sbjct: 165 ANGEGPSGFGEGQDNL--------YPGGA-FDPLGLADD-------PDT--LAELKVKEL 206
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM++ML F+ +A GK PL L
Sbjct: 207 KNGRLAMMSMLGFFVQAIVTGKGPLDNL 234
>gi|21554335|gb|AAM63442.1| PSI type III chlorophyll a/b-binding protein, putative [Arabidopsis
thaliana]
Length = 273
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 110/233 (47%), Gaps = 49/233 (21%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLGLGKD 86
S KKS V K + P VK G N P W LDGSLPGDYGFDPLGL D
Sbjct: 31 SQKKSSFVV----KAAATPPVKQGAN--RPLWFASSQSLSYLDGSLPGDYGFDPLGL-SD 83
Query: 87 P----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGA 131
P F+ +W E+I+GR+AM G + A + +P + G P A
Sbjct: 84 PEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPXXQTGVIPPA 143
Query: 132 IAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+++ +L ++ LMG+ E +R D++NP S ++ E +G
Sbjct: 144 -GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNP 198
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FF+PL D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 199 AYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 242
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 199 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 248
>gi|18539429|gb|AAL74385.1|AF359117_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
gi|18539431|gb|AAL74386.1|AF359118_1 LHC I type II chlorophyll binding protein [Pinus sylvestris]
Length = 137
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 65/111 (58%), Gaps = 11/111 (9%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLPGD+GFDPLGLG DP LKW +AEL+H RWAM GIF+ + + +
Sbjct: 30 PPWLDGSLPGDFGFDPLGLGSDPETLKWMVQAELVHCRWAMLGAAGIFIPELLTKLGILN 89
Query: 121 --PWFEAGADPGAIAPFS-FGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
W+ A G + F+ +L +++ +GW E +RW D P S + +
Sbjct: 90 TPSWYTA----GELEYFTDKTTLFVVEMIFLGWAEGRRWADILKPGSVNTD 136
>gi|384247026|gb|EIE20514.1| light harvesting complex protein I-20 [Coccomyxa subellipsoidea
C-169]
Length = 229
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 81/251 (32%), Positives = 118/251 (47%), Gaps = 58/251 (23%)
Query: 13 LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
L SSF+ G A T S+ VV+ A +W+P P +LDG L
Sbjct: 6 LTSSFVARGAARPA----TKLPKSNGSRVVMKA----GNWLPGSD------TPAYLDG-L 50
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA------G 126
PG +GFDP GLG PA L+ ++EAEL+H RWAMA V G + W++A G
Sbjct: 51 PGSFGFDPFGLGSTPANLQRFQEAELVHSRWAMAGVAGALGAELLGQGDWYQAPLWAVNG 110
Query: 127 ADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
P G PF+ +LL + + + E++R + P+++
Sbjct: 111 GAPTYLGIPVPFNLSTLLAIEFVAIAGAEAQRNAE---PDAE------------------ 149
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AG 242
++ YPGG FDPL + D++ L+ K+ E+K+ RLAM+A + F + A
Sbjct: 150 --KRKYPGGA-FDPLG---------FSKDSKVLEENKLKELKNGRLAMLAFVGFIAQHAA 197
Query: 243 QGKTPLGALGL 253
GK PL AL L
Sbjct: 198 TGKGPLEALKL 208
>gi|307110329|gb|EFN58565.1| hypothetical protein CHLNCDRAFT_59584 [Chlorella variabilis]
Length = 249
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 85/194 (43%), Gaps = 47/194 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG---I 120
P +L G PGDYG+D GL DP YRE E+IH RWAM +G V + G I
Sbjct: 55 TPSYLTGEFPGDYGWDTAGLSADPQTFARYREIEVIHARWAMLGALGCVVPELLDGTNHI 114
Query: 121 PWFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF AGA PG I S + L Q++LM +VE R
Sbjct: 115 AWFNAGATIFSDDGLQYLGIPGLINAKSIVATLIVQVILMSYVEGYR------------- 161
Query: 169 WATPWSRTAENFANATG-EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
TG + YPGG FDPL LA D + LKV EIK+
Sbjct: 162 --------VNGGPAGTGLDAVYPGGS-FDPLGLA---------DDPDTFSELKVKEIKNG 203
Query: 228 RLAMVAMLIFYFEA 241
RLAM++M F+ +A
Sbjct: 204 RLAMLSMFGFFIQA 217
>gi|125600703|gb|EAZ40279.1| hypothetical protein OsJ_24721 [Oryza sativa Japonica Group]
Length = 267
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/169 (37%), Positives = 88/169 (52%), Gaps = 41/169 (24%)
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP--------GAIAPFSFGSLL 141
L+ +RE ELIHGRWAM A +G + +G+ W +AG G PFS +L+
Sbjct: 109 LQRFRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVDGSSYLGQPLPFSISTLI 168
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
++L++G++E +R + +PE ++ YPGG +FDPL LA
Sbjct: 169 WIEVLVIGYIEFQRNAE-LDPE----------------------KRLYPGGSYFDPLGLA 205
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLG 249
D EK +RL++AEIKHARLAMVA L F + A GK PL
Sbjct: 206 S---------DPEKKERLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 245
>gi|374434016|gb|AEZ52400.1| LHCII type III chlorophyll a/b binding protein [Wolffia
australiana]
Length = 264
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 94/211 (44%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L+G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 62 TPSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKV 121
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q+LLMG VE R
Sbjct: 122 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRI------- 174
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 175 ---------------NGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKV 210
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 211 KEIKNGRLAMFSMFGFFIQAIVTGKGPLENL 241
>gi|32307464|gb|AAP79137.1| chlorophyll a/b-binding protein II 1 [Bigelowiella natans]
Length = 346
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 92/205 (44%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGIP 121
P +L G PGDYG+D GL DP YRE E+IH RWAM +G + +SG+P
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 205
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++L Q++LMG E+ R P
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNG--GPAG 263
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA D + LKV EI
Sbjct: 264 EGLDAINP-------------------GGAFDPLGLAD---------DPDTFAELKVKEI 295
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +ML FY +A GK P+
Sbjct: 296 KNGRLAMFSMLGFYVQAISTGKGPV 320
>gi|32307468|gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 120/303 (39%), Gaps = 105/303 (34%)
Query: 8 AVLNGLGSSFINGGKKSQALLAGTNR--VTSSKKSVVVAAL-----PPKKS----WIPAV 56
AVL G+ F N G + G +R +T ++ +V A PPK + W+P
Sbjct: 19 AVLCGM-LVFGNNGHVGAPVSRGVSRPAMTRIARNTLVNAARKAPPPPKNNEDPLWLP-- 75
Query: 57 KGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------ 92
N P WLDGSLPGD GFDPLGL K +L++
Sbjct: 76 ----NTERPGWLDGSLPGDRGFDPLGLSKPAEYLQFDVDQLDQNAAVNRAGRVIGQYDGG 131
Query: 93 ---------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGA 131
+RE ELIHGRWAM A +G V + +G+PW +AG
Sbjct: 132 IDEVNTENSLSPYSDIFGLRRFRECELIHGRWAMLATLGAIVAELSTGVPWDQAGKVELD 191
Query: 132 IA-------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
A PF+ L ++LL+G E R N
Sbjct: 192 GARYLNFDLPFTVSQLTLLEVLLVGGAEIYR-----------------------NTETDL 228
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML---IFYFEA 241
++ YPGG FDPL G E+ RL+ AEIKH RLAMVA + F
Sbjct: 229 DKRLYPGGT-FDPL--------GFTTKSDEQTMRLREAEIKHGRLAMVAAFGCGVQAFTT 279
Query: 242 GQG 244
G+G
Sbjct: 280 GEG 282
>gi|32307466|gb|AAP79138.1| chlorophyll a/b-binding protein II 2 [Bigelowiella natans]
Length = 346
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/226 (33%), Positives = 99/226 (43%), Gaps = 52/226 (23%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + W+P G P++L G PGDYG+D LGL DP YREAEL+H RWAM
Sbjct: 128 PDRPKWLPDAFLAGV---PDYLTGEYPGDYGWDALGLSSDPETFANYREAELLHARWAML 184
Query: 107 AVVGIF--------VGQAWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLL 146
+G G WF+AGA P + S ++ Q+L
Sbjct: 185 GALGCIFPEILAMNYGVGLEEPVWFKAGALVLNDKSIDYLGSPQLVHASSIIAIAAAQVL 244
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
LMG E+ R A+ + E F ++ +PGG +F+PL
Sbjct: 245 LMGGAEAYR--------------ASGVAPNGEEF-----DKMHPGGYYFNPL-------- 277
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ D L LKV EIK+ RLAM +ML FY +A G PL L
Sbjct: 278 -KFGKDEADLAELKVKEIKNGRLAMFSMLGFYIQAATTGNGPLQNL 322
>gi|308804351|ref|XP_003079488.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
gi|63029297|gb|AAY27547.1| chloroplast light-harvesting complex I protein precursor Lhca5
[Ostreococcus tauri]
gi|116057943|emb|CAL54146.1| PSI-associated light-harvesting chlorophyll a/b binding protein
(IC) [Ostreococcus tauri]
Length = 212
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 92/179 (51%), Gaps = 40/179 (22%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--W 122
P LDGS+ GDYGFDPLGLG +P LK+Y+EAEL++ RWAM AV GI VG +GI W
Sbjct: 37 PAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGI-VGTEVAGIEPRW 95
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
+EAG + P +LL Q +MG++E+KR W T + N
Sbjct: 96 WEAGTEDYGFPP---AALLAIQFPVMGYLENKR--------------IQGWMATGSSGVN 138
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
T +P FDP+ + KD +K+ EIK+ R AM+A + +A
Sbjct: 139 ET----FP----FDPMGMGS--KDA----------NMKLKEIKNGRAAMIAFVGIVVQA 177
>gi|8925552|gb|AAF81517.1|AF268319_1 light-harvesting complex protein LHCG4 [Bigelowiella natans]
gi|145078979|tpg|DAA05891.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Bigelowiella natans]
Length = 345
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 93/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGIP 121
P +L G PGDYG+D GL DP YRE E+IH RWAM +G + +SG+P
Sbjct: 145 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGTLGCVTPELLAKYSGVP 204
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++L Q++LMG E+ R P
Sbjct: 205 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNG--GPAG 262
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA PDT LKV EI
Sbjct: 263 EGLDAINP-------------------GGAFDPLGLADD-------PDT--FAELKVKEI 294
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +ML FY +A GK P+
Sbjct: 295 KNGRLAMFSMLGFYVQAISTGKGPV 319
>gi|333691283|gb|AEF79974.1| chloroplast minor chlorophyll a-b binding protein of photosystem II
[Dunaliella salina]
Length = 283
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 104/220 (47%), Gaps = 46/220 (20%)
Query: 47 PPKKSWIPAVKGGGNLIN----PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGR 102
P +K ++P G L++ PE+L+G L GDYG+DPLGLGKD ++ YR EL+H R
Sbjct: 49 PERKLFLP-----GGLLDRDDVPEYLNGELAGDYGYDPLGLGKDEEQVEKYRANELLHAR 103
Query: 103 WAMAAVVGIFV-------GQAWSGIPWFEAGAD------------PGAIA--PFSFGSLL 141
WAM A GI + G G WFE GA+ P + P ++
Sbjct: 104 WAMLAAAGILIPEGLQANGADIKGGTWFETGAEMLNGGTLNYFAVPFGVVQNPLPLAAVT 163
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
+++L+G VE R VD P S S + +Q YPGG FDPL LA
Sbjct: 164 LIEIVLLGAVEKFR-VDGTGPAGFSPGVGKFDSDIFDGL-----DQLYPGGP-FDPLNLA 216
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D E L+V E K+ RLAMV +L F ++
Sbjct: 217 D---------DPEVFAELQVKETKNGRLAMVGVLAFAIQS 247
>gi|157965837|gb|ABW06955.1| chloroplast light-harvesting complex II protein precursor [Euglena
gracilis]
Length = 613
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 10 LNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEW 67
+NGL + ++ + + T S+ S +AA P + W+ G P +
Sbjct: 103 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGST---PSY 159
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP---- 121
L G PGDYG+D GL DP YREAELIH RWAM +G+ +A +G+P
Sbjct: 160 LTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEP 219
Query: 122 -WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA + + S ++L Q++LMG E+ R
Sbjct: 220 VWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVN----------- 268
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P ++ YPGG FDPL LA D E LKV E+K+ R
Sbjct: 269 -GGPLGEDSDAL--------YPGGA-FDPLGLAD---------DPETFAELKVKELKNGR 309
Query: 229 LAMVAMLIFYFEA 241
LAM AM FY +A
Sbjct: 310 LAMFAMFGFYVQA 322
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 110/253 (43%), Gaps = 54/253 (21%)
Query: 10 LNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEW 67
+NGL + ++ + + T S+ S +AA P + W+ G P +
Sbjct: 343 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGST---PSY 399
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP---- 121
L G PGDYG+D GL DP YREAELIH RWAM +G+ +A +G+P
Sbjct: 400 LTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEP 459
Query: 122 -WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA + + S ++L Q++LMG E+ R
Sbjct: 460 VWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYRVN----------- 508
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P ++ YPGG FDPL LA D E LKV E+K+ R
Sbjct: 509 -GGPLGEDSDAL--------YPGGA-FDPLGLAD---------DPETFAELKVKELKNGR 549
Query: 229 LAMVAMLIFYFEA 241
LAM AM FY +A
Sbjct: 550 LAMFAMFGFYVQA 562
Score = 42.0 bits (97), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGG F DPL LA D E LKV E+K+ RLAM AM FY +A
Sbjct: 40 YPGGAF-DPLGLAD---------DPETFAELKVKELKNGRLAMFAMFGFYVQA 82
>gi|87313225|gb|ABD37909.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Chlamydomonas incerta]
Length = 249
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 95/207 (45%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G+P
Sbjct: 51 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCIFPELLGSYGVPF 110
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA + + S ++LGTQ+LLMG +E R P +
Sbjct: 111 GEAVWFKAGAQIFQEGGLDYLGNSNLVHAQSILAILGTQVLLMGAIEGYRVNG--GPLGE 168
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ ++ YPGG FDPL LA D + LKV EIK
Sbjct: 169 GL------------------DKLYPGGS-FDPLGLAD---------DPDTFSELKVKEIK 200
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 201 NGRLAMFSMFGFFVQAIVTGKGPLQNL 227
>gi|225449078|ref|XP_002275552.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic
isoform 1 [Vitis vinifera]
gi|147800947|emb|CAN75566.1| hypothetical protein VITISV_032585 [Vitis vinifera]
Length = 244
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ Y+E+ELIH RWAM AV G+ V +A W
Sbjct: 54 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R
Sbjct: 114 QAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR----------------- 156
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ T ++ YPGG FDPL G KD V K + KV EIK+ RLA++
Sbjct: 157 ------SMEKDTEKKKYPGGA-FDPL---GYSKDPV------KFEEYKVKEIKNGRLAIL 200
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENL 221
>gi|168041250|ref|XP_001773105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675652|gb|EDQ62145.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 241
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 120/254 (47%), Gaps = 65/254 (25%)
Query: 2 AAATSGAVLNGLGSSFINGGKKSQALLAGTNRVT---SSKKSVVVAALPPKKSWIPAVKG 58
AAA V+ G+ ++ + + AG++ V+ S S V A W+P
Sbjct: 5 AAAQVSRVVTGVATA------QKSSFFAGSSSVSLLGCSNGSRVCMA-----EWLP---- 49
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
GN P +LDGS PGD+GFDPLGLG+ P L+ ++E+ELIH RWAM AV G+ + +A
Sbjct: 50 -GN-PRPSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALG 107
Query: 119 GIPWFEA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSV 167
W A A PG A P +G+L L + L + + ES+R + +PE +
Sbjct: 108 YGNWVSAQKWAATPGGQATYLGNPVPWGNLPVILAIEFLAIAFAESQRNGEP-DPEKRK- 165
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
YPGG F DPL + L+ LK+ EIK+
Sbjct: 166 ---------------------YPGGAF-DPLGFS----------KGANLEELKLKEIKNG 193
Query: 228 RLAMVAMLIFYFEA 241
RLA+VA L F +A
Sbjct: 194 RLALVAFLGFAVQA 207
>gi|553065|gb|AAA65447.1| chlorophyll a/b binding protein, partial [Euglena gracilis]
Length = 334
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 103/232 (44%), Gaps = 60/232 (25%)
Query: 35 TSSKKSVVVAAL-------PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDP 87
TS KKS AA P + W+ + G P +L G LPGDYG+D GLG DP
Sbjct: 136 TSGKKSKAPAADNLSQWYGPDRAKWLGPLTGQ----VPAYLTGELPGDYGWDTAGLGADP 191
Query: 88 AFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP------WFEAGA------------ 127
L YREAE+IH RWAM +G+ + A +G+P W++AGA
Sbjct: 192 VTLARYREAEVIHARWAMLGALGVVTPELLAGNGVPFGEGAVWYKAGAQIFSADGLNYLG 251
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+P I S + L +MG VE R+ W P +
Sbjct: 252 NPSLIHAQSVVLTFLSTLAIMGAVEGYRY---------GGGW--PLGDDLDRL------- 293
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG FDPL LA D + LKV E+K+ RLAMVAML FY
Sbjct: 294 -YPGGP-FDPLGLAN---------DPDAFAELKVKEVKNGRLAMVAMLGFYV 334
>gi|193875800|gb|ACF24536.1| light harvesting complex protein LHCII-1 [Gymnochlora stellata]
Length = 335
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 93/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGIP 121
P +L G PGDYG+D GL DP YRE E+IH RWAM +G + +SG+P
Sbjct: 130 PSYLTGEFPGDYGWDTQGLSADPTTFAAYRETEVIHARWAMLGALGCVTPELLSKYSGVP 189
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++L Q++LMG E+ R P
Sbjct: 190 IAEPVWFKAGSQIFAEGGLDYLGNPSLIHAQSILAILACQVVLMGGAEAYRVNG--GPAG 247
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA PDT LKV EI
Sbjct: 248 EGLDAINP-------------------GGAFDPLGLADD-------PDT--FAELKVKEI 279
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +ML FY +A GK P+
Sbjct: 280 KNGRLAMFSMLGFYVQAIATGKGPV 304
>gi|145078830|tpg|DAA05886.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Euglena gracilis]
Length = 825
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 112/253 (44%), Gaps = 54/253 (21%)
Query: 10 LNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEW 67
+NGL + ++ + + T S+ S +AA P + W+ G P +
Sbjct: 86 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSEGST---PSY 142
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP---- 121
L G PGDYG+D GL DP YREAELIH RWAM +G+ +A +G+P
Sbjct: 143 LTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEP 202
Query: 122 -WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA + + S ++L Q++LMG E+ R V+
Sbjct: 203 VWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR-VN---------- 251
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P ++ YPGG FDPL LA D E LKV E+K+ R
Sbjct: 252 -GGPLGEDSDAL--------YPGGA-FDPLGLAD---------DPETFAELKVKELKNGR 292
Query: 229 LAMVAMLIFYFEA 241
LAM AM FY +A
Sbjct: 293 LAMFAMFGFYVQA 305
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 10 LNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEW 67
+NGL + ++ + + T S+ S +AA P + W+ P +
Sbjct: 326 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENST---PSY 382
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP---- 121
L G PGDYG+D GL DP YREAELIH RWAM +G+ +A +G+P
Sbjct: 383 LTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEP 442
Query: 122 -WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA + + S ++L Q++LMG E+ R V+
Sbjct: 443 VWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR-VN---------- 491
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P ++ YPGG FDPL LA D E LKV E+K+ R
Sbjct: 492 -GGPLGEDSDAL--------YPGGA-FDPLGLAD---------DPETFAELKVKELKNGR 532
Query: 229 LAMVAMLIFYFEA 241
LAM AM FY +A
Sbjct: 533 LAMFAMFGFYVQA 545
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 111/253 (43%), Gaps = 54/253 (21%)
Query: 10 LNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL--PPKKSWIPAVKGGGNLINPEW 67
+NGL + ++ + + T S+ S +AA P + W+ P +
Sbjct: 566 VNGLTAVYVTQFAPTPVAMFATAGRKSTPASDKLAAWYGPNRNKWLGPFSENST---PSY 622
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIP---- 121
L G PGDYG+D GL DP YREAELIH RWAM +G+ +A +G+P
Sbjct: 623 LTGEFPGDYGWDTAGLAADPITFAKYREAELIHARWAMLGALGVVFPEALAKAGVPLAEP 682
Query: 122 -WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA + + S ++L Q++LMG E+ R V+
Sbjct: 683 VWFKAGAQIFSEGGLDYLGNSNLVHAQSILAILAFQVVLMGLAEAYR-VN---------- 731
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P ++ YPGG FDPL LA D E LKV E+K+ R
Sbjct: 732 -GGPLGEDSDAL--------YPGGA-FDPLGLAD---------DPETFAELKVKELKNGR 772
Query: 229 LAMVAMLIFYFEA 241
LAM AM FY +A
Sbjct: 773 LAMFAMFGFYVQA 785
Score = 42.0 bits (97), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
YPGG F DPL LA D E LKV E+K+ RLAM AM FY +A
Sbjct: 23 YPGGAF-DPLGLAD---------DPETFAELKVKELKNGRLAMFAMFGFYVQA 65
>gi|371721828|gb|AEX55237.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Allium
sativum]
Length = 261
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/205 (35%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVNVN 119
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q+LLMG VE R
Sbjct: 120 FKEPVWFKAGAQIFSQGGLDYLGNPNLVHAQSILAVLGFQVLLMGAVEGFR--------- 170
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ N G YPGG++FDPL LA D LKV EI
Sbjct: 171 ---------INGLDGVGN--GNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEI 210
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M F+ +A GK PL
Sbjct: 211 KNGRLAMFSMFGFFVQAIVTGKGPL 235
>gi|8925556|gb|AAF81519.1|AF268321_1 light-harvesting complex protein LHCG12 [Bigelowiella natans]
gi|145079012|tpg|DAA05893.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Bigelowiella natans]
Length = 346
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 93/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGIP 121
P +L G PGDYG+D GL DP YRE E+IH RWAM +G + +SG+P
Sbjct: 146 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 205
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++L Q++LMG E+ R P
Sbjct: 206 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNG--GPAG 263
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA PDT LKV EI
Sbjct: 264 EGLDAINP-------------------GGAFDPLGLADD-------PDT--FAELKVKEI 295
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +ML FY +A GK P+
Sbjct: 296 KNGRLAMFSMLGFYVQAIATGKGPV 320
>gi|449442612|ref|XP_004139075.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
gi|449532766|ref|XP_004173351.1| PREDICTED: chlorophyll a-b binding protein 8, chloroplastic-like
[Cucumis sativus]
Length = 273
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 38/195 (19%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDGSLPGD+GFDPLGL DP F+ +W E+I+GR+AM G + +
Sbjct: 65 YLDGSLPGDFGFDPLGL-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAAGAIAPEIFGSL 123
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ +PWF+ G P A P+ +L ++ LMG+ E +R+ D+ P S
Sbjct: 124 GLIPPETALPWFKTGVIPPAGTYNYWADPY---TLFVFEMALMGFAEHRRFQDWAKPGSM 180
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E F +G+ YPGG F+PL D + + LK+ EIK
Sbjct: 181 GKQYFL----GLEKFLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEIK 227
Query: 226 HARLAMVAMLIFYFE 240
+ RLAM+A+L ++ +
Sbjct: 228 NGRLAMLAILGYFIQ 242
Score = 39.7 bits (91), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGV 248
>gi|8925554|gb|AAF81518.1|AF268320_1 light-harvesting complex protein LHCG11 [Bigelowiella natans]
gi|145078995|tpg|DAA05892.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Bigelowiella natans]
Length = 333
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 92/205 (44%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGIP 121
P +L G PGDYG+D GL DP YRE E+IH RWAM +G + +SG+P
Sbjct: 133 PSYLTGEFPGDYGWDTQGLSADPNTFAAYRETEVIHARWAMLGALGCVTPELLAKYSGVP 192
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++L Q++LMG E+ R P
Sbjct: 193 IAEPVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAILACQVILMGGAEAYRVNG--GPAG 250
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA D + LKV EI
Sbjct: 251 EGLDAINP-------------------GGAFDPLGLA---------DDPDTFAELKVKEI 282
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +ML FY +A GK P+
Sbjct: 283 KNGRLAMFSMLGFYVQAIATGKGPV 307
>gi|384253059|gb|EIE26534.1| chlorophyll a/b-binding protein P25 [Coccomyxa subellipsoidea
C-169]
Length = 234
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 95/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP YRE E+IH RWAM +G G +
Sbjct: 35 TPSYLSGEYPGDYGWDTAGLSADPETFAKYREIEVIHARWAMLGALGCLTPELLAKNGVS 94
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ W++AGA +P + S ++L +Q+LLMG +E R + P
Sbjct: 95 FGEAVWWKAGAQIFAPGGLDYLGNPSLVHAQSIIAILASQVLLMGAIEGYRV--YGGPGG 152
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG +FDPL LA D + LKV EI
Sbjct: 153 EGL------------------DKVYPGGDYFDPLGLAD---------DPDTFAELKVKEI 185
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 186 KNGRLAMFSMFGFFVQAIVTGKGPLENL 213
>gi|302824061|ref|XP_002993677.1| light harvesting complex [Selaginella moellendorffii]
gi|300138500|gb|EFJ05266.1| light harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 91.3 bits (225), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 99/197 (50%), Gaps = 39/197 (19%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW-- 117
+LDG+LPGDYGFDPLGL DPA F+ W AE+I+GR+AM G + +
Sbjct: 70 SYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 118 -------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ + WF+ G P A P+ +L ++ LMG+ E +R DF+ P S
Sbjct: 129 IGIIPQETAVVWFKTGVFPPAGTYNYWADPY---TLFFLEMALMGFAEHRRAQDFYKPGS 185
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
++ + E + +G+ YPGG F+P D + + LK+ E+
Sbjct: 186 MGKQYFLGF----EKYLGGSGDPAYPGG-IFNPFGFG---------KDEKSMRTLKIKEV 231
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAM+A+L ++ +A
Sbjct: 232 KNGRLAMLAILGYFIQA 248
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+P G GKD ++ + E+ +GR AM A++G F+ ++G+ F+
Sbjct: 203 DPAYPGGI-FNPFGFGKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQ 257
>gi|168041643|ref|XP_001773300.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675342|gb|EDQ61838.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 94/188 (50%), Gaps = 45/188 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +LDGS PGD+GFDPLGLG+ P L+ ++E+ELIH RWAM A+ G+ + +A W
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAIPGVLIPEALGYGNWVS 70
Query: 125 A---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
A A PG A P +G+L L + + + +VES+R
Sbjct: 71 AQKWAATPGGQATYLGNPVPWGNLPIILAVEFIAIAFVESQR------------------ 112
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
N + ++ YPGG FDPL + L+ LK+ EIK+ RLA+VA
Sbjct: 113 -----NGESDPEKRKYPGGP-FDPLGFS----------KGANLEELKLKEIKNGRLALVA 156
Query: 234 MLIFYFEA 241
L F +A
Sbjct: 157 FLGFVVQA 164
>gi|145332845|ref|NP_001078288.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|332645787|gb|AEE79308.1| light-harvesting complex I chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 213
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/176 (37%), Positives = 90/176 (51%), Gaps = 44/176 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
YPGG FDPL Y D +KL+ LKV EIK+ +
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGK 196
>gi|193875804|gb|ACF24538.1| light harvesting complex protein LHCII-3 [Gymnochlora stellata]
Length = 300
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 74/204 (36%), Positives = 93/204 (45%), Gaps = 47/204 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI----FVGQAWSGI 120
P +L G PGDYG+D GL DP K YRE E+IH RWAM +G + A +
Sbjct: 106 PAYLTGEFPGDYGWDSAGLSADPLTFKGYRETEVIHARWAMLGALGCIFPELLNSAGFNL 165
Query: 121 P-WFEAG-----------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
P WF+AG +P + S ++L Q++LMG E+ R FN
Sbjct: 166 PVWFKAGGTIFENGIDYLGNPNLVHAQSALAVLSVQVVLMGASEAYR----FN------- 214
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P A+ YPGG FDPL A D K LKV EIK+ R
Sbjct: 215 -GGPLGEPADVL--------YPGGA-FDPLGFA---------KDPSKAAELKVKEIKNGR 255
Query: 229 LAMVAMLIFYFEA-GQGKTPLGAL 251
LAM AML +Y +A GK P+ L
Sbjct: 256 LAMTAMLGYYVQALATGKGPIENL 279
>gi|255567170|ref|XP_002524566.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536119|gb|EEF37774.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 273
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 38/195 (19%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA 116
+LDGSLPGD+GFDPLGL DP F+ KW E+I+GR+AM G +G+A
Sbjct: 65 YLDGSLPGDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAAGAIAPEILGKA 123
Query: 117 -----WSGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+ +PWF+ G P A P+ +L ++ LMG+ E +R+ D+ P S
Sbjct: 124 GLIPPETALPWFQTGVIPPAGTYDYWADPY---TLFVFEMALMGFAEHRRFQDWAKPGSM 180
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ E F +G+ YPGG F+PL D + + LK+ E+K
Sbjct: 181 GKQYFL----GLEKFLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEVK 227
Query: 226 HARLAMVAMLIFYFE 240
+ RLAM+A+L ++ +
Sbjct: 228 NGRLAMLAILGYFVQ 242
Score = 39.7 bits (91), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
D + PG F+PLG GKD +K + E+ +GR AM A++G FV +G+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFVQGLVTGV 248
>gi|87313169|gb|ABD37881.1| light-harvesting chlorophyll-a/b binding protein Lhca4.1
[Mesostigma viride]
gi|145079679|tpg|DAA05923.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Mesostigma viride]
Length = 264
Score = 90.9 bits (224), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 83/251 (33%), Positives = 117/251 (46%), Gaps = 64/251 (25%)
Query: 3 AATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNL 62
AA++ AVL +F+ K+ A AG V++ VV A L K W K
Sbjct: 8 AASNVAVL--ARKAFVGQAVKASAKPAGAKPVST----VVRADL--GKKWYTGAK----- 54
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW----- 117
P +LDGS+PGDYG+DPL +G +P LKWY++ E+ +GRWAM V G+ A
Sbjct: 55 -PPAYLDGSMPGDYGYDPLRMGGNPELLKWYQQGEIENGRWAMIGVAGMLFTDALTQFGI 113
Query: 118 SGIP-WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
S +P W+EAGA A +PF +L+ ++ + VE R + W +T
Sbjct: 114 SDLPDWYEAGAVAQASSPFDLQTLIAIEIFVFATVEGFR--------------ISTWKKT 159
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
G PG F D + G+ PD +++ EIK+ RLAM A +
Sbjct: 160 -----------GKPG--FLDIM--------GMDSPD------MRLKEIKNGRLAMFAFVG 192
Query: 237 F---YFEAGQG 244
F YF G G
Sbjct: 193 FVAQYFVNGMG 203
>gi|75220641|sp|Q32904.1|CB23_PEA RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type III CAB-3; Flags: Precursor
gi|309673|gb|AAA84545.1| light harvesting protein [Pisum sativum]
Length = 275
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 116/243 (47%), Gaps = 62/243 (25%)
Query: 32 NRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEW---------LDGSLPGDYGFDPLG 82
+ V S+K +V AA P VK GG + P W LDGSLPGDYGFDPLG
Sbjct: 30 SSVGCSRKGLVRAAA------TPPVKQGG-VDRPLWFASKQSLSYLDGSLPGDYGFDPLG 82
Query: 83 LGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGA 127
L DP F+ +W E+I+GR+AM VG ++G+ + + WF+ G
Sbjct: 83 L-SDPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV 141
Query: 128 DPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA-- 181
P A +++ +L ++ LMG+ E +R+ D WA P S + F
Sbjct: 142 IPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQD----------WAKPGSMGKQYFLGL 190
Query: 182 ----NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
+G YPGG FF+PL D + L LK+ E+K+ RLAM+A+L +
Sbjct: 191 EKGFGGSGNPAYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAMLAILGY 241
Query: 238 YFE 240
+ +
Sbjct: 242 FIQ 244
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K+ ++ KG G NP + PG F+PLG GKD LK + E+ +GR AM A+
Sbjct: 184 KQYFLGLEKGFGGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 238
Query: 109 VGIFVGQAWSGI 120
+G F+ +G+
Sbjct: 239 LGYFIQGLVTGV 250
>gi|413954857|gb|AFW87506.1| chlorophyll a-b binding protein 8 [Zea mays]
Length = 209
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 97/188 (51%), Gaps = 34/188 (18%)
Query: 72 LPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW-------- 117
LPGDYGFDPLGL DP F+ KW E+I+GR+AM VG + +
Sbjct: 6 LPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRYAMLGAVGAIAPEIFGKMGIIPP 64
Query: 118 -SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+ +PWF+ G P A +++ +L + LMG+ E +R D++NP S ++
Sbjct: 65 ETALPWFKTGVIPPA-GTYNYWADSYTLFVFNMALMGFAEHRRLQDWYNPGSMGKQYFL- 122
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
E F +G+ YPGG F+PL T K+ ++ LK+ EIK+ RLAM+
Sbjct: 123 ---GLEKFLAGSGDPSYPGGPLFNPLGFGKTEKE---------MNELKLKEIKNGRLAML 170
Query: 233 AMLIFYFE 240
A+L ++ +
Sbjct: 171 AILGYFIQ 178
>gi|207853236|gb|ACI25403.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L +L+L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIELILFHYVEVRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|159465641|ref|XP_001691031.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158279717|gb|EDP05477.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 246
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 48/222 (21%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
V+ ++ V + + W P P LDGS+ GDYGFDPL LG + LKW+
Sbjct: 13 VSRPSRATVRVSASTRPMWYPGATA------PAHLDGSMLGDYGFDPLRLGVNKDNLKWF 66
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGIPWF-EAGADPGAIAPFSFGSLLGTQLLLMGWVE 152
REAEL +GRWAMAAVVGI A G+P F AGA+ A+ +L ++ + +E
Sbjct: 67 REAELTNGRWAMAAVVGILFTDA-VGLPKFWTAGAEKYAL---DNQTLALIEVAVFAVLE 122
Query: 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPD 212
KR+ TGE G+ FDP+ +
Sbjct: 123 GKRY----------------------EIYKKTGETGFLSFAPFDPMGM------------ 148
Query: 213 TEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGALGL 253
K + +K+ E+K+ RLAM+A L F +A GK P+ L L
Sbjct: 149 --KSEEMKLKELKNGRLAMLAFLGFCSQAAVYGKGPIETLQL 188
>gi|303290578|ref|XP_003064576.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
gi|226454174|gb|EEH51481.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas pusilla CCMP1545]
Length = 286
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 36/191 (18%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FV 113
N +LDG+LPGD+GFDPLG+ DP F+ +W +E+IHGRWAM V GI +
Sbjct: 71 NMAYLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEIL 129
Query: 114 GQA-----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPES 164
GQA +G+ WF +GA P F + ++ + +M + E KR D++ P S
Sbjct: 130 GQAGLIPESTGLVWFTSGAIP-PQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWYPGS 188
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
Q+ + W + FA +G YPGGK+F+ AG KD + +++ EI
Sbjct: 189 QAEQPLMGWEK---GFA-GSGNPAYPGGKYFN---FAGLGKD--------DMAKMQKKEI 233
Query: 225 KHARLAMVAML 235
K+ RLAM+A L
Sbjct: 234 KNGRLAMMAFL 244
>gi|207853278|gb|ACI25424.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + +GI W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTGIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|302800774|ref|XP_002982144.1| light-harvesting complex [Selaginella moellendorffii]
gi|300150160|gb|EFJ16812.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 110/258 (42%), Gaps = 58/258 (22%)
Query: 17 FINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDY 76
F+ G + L G + +K S+ + P + ++ G + P +L G PGDY
Sbjct: 18 FLRGSGSRKNALRGRSVQCQAKVSMDLWYGPDRVKFL----GPFSAQTPSYLKGEFPGDY 73
Query: 77 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAGA- 127
G+D GL DP R ELIHGRWAM +G V W G+ WF+AG+
Sbjct: 74 GWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGVEFKEKVWFKAGSQ 133
Query: 128 -----------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
+P + S ++ Q++LMG VE R
Sbjct: 134 IFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRI-------------------- 173
Query: 177 AENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
N GE G YPGG++FDPL A D E L LKV EIK+ RLAM +M
Sbjct: 174 --NGLPDVGEGGDLYPGGQYFDPLGFA---------DDPETLAELKVKEIKNGRLAMFSM 222
Query: 235 LIFYFEA-GQGKTPLGAL 251
F+ +A GK PL L
Sbjct: 223 FGFFVQAIVTGKGPLENL 240
>gi|159474444|ref|XP_001695335.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158275818|gb|EDP01593.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 239
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/196 (36%), Positives = 88/196 (44%), Gaps = 46/196 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGK+PA LK + E+E+IHGRWAM V G + W++
Sbjct: 46 PAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYD 105
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M E +R
Sbjct: 106 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMAAAEGQR-------------------- 145
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
G YPGG F DPL A D+ K LK+ EIK+ RLAMVA L
Sbjct: 146 ------GDAGGVVYPGGAF-DPLGFA---------KDSSKSGELKLKEIKNGRLAMVAFL 189
Query: 236 IFYFE-AGQGKTPLGA 250
F + A GK P+ A
Sbjct: 190 GFVAQHAATGKGPIAA 205
>gi|307105157|gb|EFN53408.1| hypothetical protein CHLNCDRAFT_137219 [Chlorella variabilis]
Length = 258
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 93/209 (44%), Gaps = 51/209 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +L G PGDYG+D GL DP YRE ELIH RWA+ +GI +
Sbjct: 54 PSYLKGEFPGDYGWDTAGLSADPETFARYREIELIHSRWALLGALGILTPEYLQRSGAVD 113
Query: 119 ---GIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P I S + L Q++L+G E+ R+
Sbjct: 114 FGEAAVWFKAGASIFGDDGLNYLGNPQLIHAQSIVATLLAQIVLVGTAEAYRY------- 166
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
E + +G++ YPGG FFDPL L D E L LKV E
Sbjct: 167 ------------AGEGPVDTSGDKLYPGG-FFDPLGLG---------DDPEALAELKVKE 204
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLA V++ F+ +A GK PL L
Sbjct: 205 IKNGRLAQVSVFGFFVQALVTGKGPLENL 233
>gi|302833175|ref|XP_002948151.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
gi|300266371|gb|EFJ50558.1| light-harvesting protein of photosystem I [Volvox carteri f.
nagariensis]
Length = 247
Score = 90.5 bits (223), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/220 (32%), Positives = 104/220 (47%), Gaps = 48/220 (21%)
Query: 34 VTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
V S+ + V + + W P P+ LDG++ GDYGFDPL LG +P LKW+
Sbjct: 14 VRPSRATAVRVSASTRPMWYPGATA------PKHLDGTMLGDYGFDPLRLGTNPEQLKWF 67
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGIPWF-EAGADPGAIAPFSFGSLLGTQLLLMGWVE 152
REAEL +GRWAMAAV GI G+P F AGA+ A+ +L ++ + +E
Sbjct: 68 REAELTNGRWAMAAVAGILFTD-LVGLPKFWLAGAEKYAL---DTPTLALIEVAVFAVLE 123
Query: 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPD 212
KR+ + TGE G+ FDPL +
Sbjct: 124 GKRY----------------------DIYKKTGETGFLSFAPFDPLGM------------ 149
Query: 213 TEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
K + +K+ E+K+ RLAM+A + F +A +GK P+ L
Sbjct: 150 --KSEEMKLKELKNGRLAMLAFVGFCSQAAVRGKGPIECL 187
>gi|156890564|gb|ABU96692.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRV 124
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 125 SFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI------- 177
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D LKV
Sbjct: 178 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 213
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|296086034|emb|CBI31475.3| unnamed protein product [Vitis vinifera]
Length = 201
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 98/201 (48%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ Y+E+ELIH RWAM AV G+ V +A W
Sbjct: 11 RPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGVLVPEALGLGNWV 70
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R
Sbjct: 71 QAQEWAAIPGGQATYLGNPVPWGNLPTILAIEFLAIAFVEHQR----------------- 113
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ T ++ YPGG FDPL G KD V K + KV EIK+ RLA++
Sbjct: 114 ------SMEKDTEKKKYPGGA-FDPL---GYSKDPV------KFEEYKVKEIKNGRLAIL 157
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 158 AFVGFCVQQSAYPGTGPLENL 178
>gi|303288485|ref|XP_003063531.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226455363|gb|EEH52667.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 274
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 86/286 (30%), Positives = 116/286 (40%), Gaps = 103/286 (36%)
Query: 38 KKSVVVAALPPKKSWIPAVKGG------GNL-----------INPE---WLDGSLPGDYG 77
KK+ V PKK PA +G GN+ NPE +LDG+LPGD G
Sbjct: 16 KKAAPVKKTAPKKKSAPAKRGASSGARKGNIGPNRTLWNGWESNPEPPAYLDGTLPGDAG 75
Query: 78 FDPLGLGKDPAFLKW--------------------------------------------Y 93
FDP GL K +L++ +
Sbjct: 76 FDPFGLSKPVEYLQFDLDALNQSAAINPSGNVIGKLKKVDNKPTERTIVPFNEAFDIVRF 135
Query: 94 REAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA----DP---GAIAPFSFGSLLGTQLL 146
RE EL H RWAM +VG V ++ +GI W +AG P G +L+ ++L
Sbjct: 136 RECELQHSRWAMLGLVGAVVAESETGISWVDAGKVLNEQPQYLGFDINVPVTTLVWIEVL 195
Query: 147 LMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKD 206
MG+ E KR + + ++ YPGG +FDPL LA +
Sbjct: 196 TMGFAEVKRSSEL-----------------------DSNKRCYPGG-YFDPLGLAASA-- 229
Query: 207 GVYIPDTEKLDRLKVAEIKHARLAMVAML-IFYFEAGQGKTPLGAL 251
D E L +L+ AE+KH RLAM+ ML I A G +PL AL
Sbjct: 230 -----DAEALFKLQTAELKHGRLAMIGMLGIASQAAKNGLSPLEAL 270
>gi|224100797|ref|XP_002312019.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
gi|222851839|gb|EEE89386.1| light-harvesting complex I protein Lhca1 [Populus trichocarpa]
Length = 244
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 80/235 (34%), Positives = 110/235 (46%), Gaps = 64/235 (27%)
Query: 30 GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF 89
GT+RVT S W+P P +LDGS PGD+GFDPL LG+ P
Sbjct: 38 GTSRVTMSA------------DWLPGQP------RPPYLDGSAPGDFGFDPLRLGEVPEN 79
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPGAIA-----PFSFGSL- 140
L+ Y+E+ELIH RWAM AV GI + +A W +A A PG A P +G+L
Sbjct: 80 LERYKESELIHCRWAMLAVPGILIPEALGLGNWVKAQEWAAAPGGQATYLGQPVPWGTLP 139
Query: 141 --LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
L + + + +VE +R ++ +PE + YPGG FDPL
Sbjct: 140 TVLAIEFVAIAFVEHQRSME-KDPEKKK----------------------YPGGA-FDPL 175
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE--AGQGKTPLGAL 251
+ D +K + KV EIK+ RLA++A + F + A G PL L
Sbjct: 176 GFSK---------DPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENL 221
>gi|207853242|gb|ACI25406.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/140 (39%), Positives = 79/140 (56%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + +A + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEALTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|145345103|ref|XP_001417062.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144577288|gb|ABO95355.1| chlorophyll a/b binding, maybe photosystem I light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 252
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 67/175 (38%), Positives = 89/175 (50%), Gaps = 43/175 (24%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP- 121
+ P++LDG++ GDYGFDPL LG +P L + +EAEL++GRWAMAA GI A G+P
Sbjct: 48 VAPKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFTDA-VGLPK 106
Query: 122 WFEAGA-DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
W+EAGA D G F L+G Q++ M +E+ R F
Sbjct: 107 WWEAGAVDYG----MDFQQLVGFQVVAMSILEAARTRGFMK------------------- 143
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+GE G FDP G+ PD +V E+K+ARLAMVA L
Sbjct: 144 ---SGESGVLNAFPFDPA--------GLDAPDK------RVKEVKNARLAMVAFL 181
>gi|207853246|gb|ACI25408.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYSASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|11066109|gb|AAG28464.1|AF195794_1 chlorophyll A-B binding protein of LHCI [Chlamydomonas reinhardtii]
Length = 239
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 88/198 (44%), Gaps = 46/198 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WL LPG+YGFDPL LGK+PA LK + E+E+IHGRWAM V G + W++
Sbjct: 46 PAWLPDDLPGNYGFDPLSLGKEPASLKRFTESEVIHGRWAMLGVAGSLAVELLGYGNWYD 105
Query: 125 A------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
A G G PF +LL + + M
Sbjct: 106 APLWAVNGGKATWFGIEVPFDLNALLAFEFVAMA-------------------------- 139
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
AE + PGG F DPL A D+ K LK+ EIK+ RLAMVA L
Sbjct: 140 AAEGQRRRCRRRRLPGGAF-DPLGFA---------KDSSKSGELKLKEIKNGRLAMVAFL 189
Query: 236 IFYFE-AGQGKTPLGALG 252
F + A GK PL ALG
Sbjct: 190 GFVAQHAATGKAPLAALG 207
>gi|145079419|tpg|DAA05914.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Acetabularia acetabulum]
Length = 248
Score = 90.1 bits (222), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 105/245 (42%), Gaps = 61/245 (24%)
Query: 25 QALLAGTNRVTS----SKKSVVVAAL----PPKKSWIPAVKGGGNLINPEWLDGSLPGDY 76
Q L GT ++ +K+ V AA+ P + W+ G P +L G PGDY
Sbjct: 3 QTSLVGTTTKSTLPKGNKRVSVQAAVEWYGPDRAKWLGPYSDGAV---PSYLTGEFPGDY 59
Query: 77 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGAD 128
G+D GL DP K YRE ELIH RWAM +G + G ++ WF AGA
Sbjct: 60 GWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILAKYGGTSFGESVWFRAGAQ 119
Query: 129 ------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
P I S G+++ +Q++LMG +E R P + ++ P
Sbjct: 120 IFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GPAGEGLDPLYP---- 173
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
G+ FDPL LA D + LK+ EIK+ RLAM +M
Sbjct: 174 ---------------GESFDPLGLAD---------DPDTFAELKIKEIKNGRLAMFSMFG 209
Query: 237 FYFEA 241
FY +A
Sbjct: 210 FYVQA 214
>gi|388521809|gb|AFK48966.1| unknown [Lotus japonicus]
Length = 241
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 97/202 (48%), Gaps = 46/202 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV---------- 113
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH RWAM AV GI V
Sbjct: 54 RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 113
Query: 114 -GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
Q W+ +P +A + + ++L + L + +VE +R ++ +PE
Sbjct: 114 KAQEWAALPGGQATYLGNPVPRGTLPTVLAIEFLAISFVEHQRSME-KDPE--------- 163
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL Y D +K KV EIK+ RLA++
Sbjct: 164 -------------KKKYPGGA-FDPLG---------YSKDPKKFHEYKVKEIKNGRLALL 200
Query: 233 AMLIFYFE--AGQGKTPLGALG 252
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENLA 222
>gi|302837618|ref|XP_002950368.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|5902598|gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
gi|300264373|gb|EFJ48569.1| light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 98/221 (44%), Gaps = 51/221 (23%)
Query: 23 KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLG 82
KSQ L G +++V A P +W+P L P L GSL GD GFDPLG
Sbjct: 5 KSQVAL-GRRAPVRGQRAVCAATARP--TWLP------GLSPPAHLKGSLAGDSGFDPLG 55
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--PWFEAGADPGAIAPFSFGSL 140
LG+D LKWY EAE +GRWAM AV GI +GQ G+ W+EAGA I L
Sbjct: 56 LGQDEGRLKWYAEAEKTNGRWAMMAVTGI-LGQELLGVTPSWYEAGAKEYDIPS---TPL 111
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
+ ++MG++E KR+ F TG G+ FDP L
Sbjct: 112 TAIEFIVMGFLEIKRYQGF----------------------KTTGTSGFINSFPFDPAGL 149
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ E+K+ RLAMVA + F +A
Sbjct: 150 NSA--------------SMATKEVKNGRLAMVAFVGFAVQA 176
>gi|302816085|ref|XP_002989722.1| light-harvesting complex [Selaginella moellendorffii]
gi|300142499|gb|EFJ09199.1| light-harvesting complex [Selaginella moellendorffii]
Length = 281
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 39/197 (19%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW-- 117
+LDG+LPGDYGFDPLGL DPA F+ W AE+I+GR+AM G + +
Sbjct: 70 SYLDGTLPGDYGFDPLGL-SDPAGAGNFMTPNWLSYAEIINGRYAMLGAAGAIAPEIFGK 128
Query: 118 -------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ + WF+ G P A P+ +L ++ LMG+ E +R D++ P S
Sbjct: 129 IGIIPQQTAVVWFKTGVFPPAGTYNYWADPY---TLFFLEMALMGFAEHRRAQDYYKPGS 185
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
++ + E + +G+ YPGG F+P D + + LK+ E+
Sbjct: 186 MGKQYFLGF----EKYLGGSGDPAYPGG-IFNPFGFG---------KDEKSMRTLKIKEV 231
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAM+A+L ++ +A
Sbjct: 232 KNGRLAMLAILGYFIQA 248
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+P G GKD ++ + E+ +GR AM A++G F+ ++G+ F+
Sbjct: 203 DPAYPGGI-FNPFGFGKDEKSMRTLKIKEVKNGRLAMLAILGYFIQAPFTGVGPFQ 257
>gi|302830496|ref|XP_002946814.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
gi|300267858|gb|EFJ52040.1| hypothetical protein VOLCADRAFT_45832 [Volvox carteri f.
nagariensis]
Length = 227
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 89/195 (45%), Gaps = 31/195 (15%)
Query: 67 WLDGSLPGDYGFDPLGL-----GKDPAFL--KWYREAELIHGRWAMAAVVGIFVGQAW-- 117
+LDG+LPGD+GFDPLGL G FL +W AEL+H RWAM G +
Sbjct: 13 YLDGTLPGDFGFDPLGLFDPSSGGSAGFLSQRWLHTAELMHARWAMLGAAGCLAPEYLAH 72
Query: 118 -------SGIPWFEAGADPGAIAPFSFGSLLG----TQLLLMGWVESKRWVDFFNPESQS 166
+G+ WF+ G P A A F +G LG Q+++MG E R ++ P S
Sbjct: 73 EKVIPKATGLLWFKTGFLPQASAGFDYGLPLGVLFAVQMVMMGVAEGLRGAEYIAPGSLR 132
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
+ G YPGG F+PL L + ++ AEI+H
Sbjct: 133 NNKLLGLEKLIAT--TRAGSAAYPGGLMFNPLGLG---------EKPAAMREMQQAEIRH 181
Query: 227 ARLAMVAMLIFYFEA 241
RLAM+A L + +A
Sbjct: 182 GRLAMLACLGYAAQA 196
>gi|302765457|ref|XP_002966149.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165569|gb|EFJ32176.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R ELIHGRWAM +G V W G+
Sbjct: 61 TPSYLKGEFPGDYGWDTAGLSADPEAFARNRALELIHGRWAMLGALGCVFPEVLSKWVGV 120
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 121 EFKEKVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAIWACQVILMGLVEGYRI------- 173
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE G YPGG++FDPL A D E L LKV
Sbjct: 174 ---------------NGLPDVGEGGDLYPGGQYFDPLGFA---------DDPETLAELKV 209
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 210 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|255638437|gb|ACU19528.1| unknown [Glycine max]
Length = 287
Score = 90.1 bits (222), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 94/194 (48%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P +F + +++L+G E R ++ + E
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINFILAVVAEIVLVGGAEYYRIINGLDLE---- 204
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA KD PD L LKV EIK+
Sbjct: 205 ------------------DKLHPGGP-FDPLGLA---KD----PDQAAL--LKVKEIKNG 236
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 237 RLAMFAMLGFYFQA 250
>gi|302804514|ref|XP_002984009.1| light-harvesting complex [Selaginella moellendorffii]
gi|300148361|gb|EFJ15021.1| light-harvesting complex [Selaginella moellendorffii]
Length = 246
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 96/189 (50%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ P L+ ++E+ELIH RWAM AV G + +A W
Sbjct: 57 RPAYLDGSAPGDFGFDPLGLGEVPDNLERFKESELIHCRWAMLAVPGCLIPEALGLGNWV 116
Query: 124 EA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG A P +G+L + + + + +VES+R P ++
Sbjct: 117 EAQQWAATPGGQATYLGTPVPWGTLPVIIAIEFVAIAFVESRR---IGVPSAE------- 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG F DPL + D +K + K+ E+K+ RLA++
Sbjct: 167 -------------KRKYPGGAF-DPLGFSK---------DPKKFEEFKLKEVKNGRLALL 203
Query: 233 AMLIFYFEA 241
A L F +A
Sbjct: 204 AFLGFCAQA 212
>gi|160713965|gb|ABX47018.1| chloroplast chlorophyll a/b binding protein cab-BO3 [Bambusa
oldhamii]
Length = 267
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWLRV 124
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 125 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI------- 177
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D LKV
Sbjct: 178 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 213
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|307110371|gb|EFN58607.1| hypothetical protein CHLNCDRAFT_50418 [Chlorella variabilis]
Length = 212
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/193 (37%), Positives = 91/193 (47%), Gaps = 39/193 (20%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV---------GQAWSGIP 121
L G++GFDPL LGKD A LKWY +AEL +GRWAM V GI V G + +
Sbjct: 13 DLAGNFGFDPLSLGKDEAALKWYTQAELQNGRWAMLGVAGILVQELLHKTGLGGKAADVY 72
Query: 122 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFA 181
WF+AG + AP +L+ LL W E R D+F P S ++ F
Sbjct: 73 WFDAGNNT-FWAPKE--TLIAISFLLFAWAECNRAQDYFKPG----------SNVSDPFG 119
Query: 182 NATG--EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
N+ E GYPG FDPL G K+ EIK+ RLAM+A L F
Sbjct: 120 NSIKYVELGYPG---FDPLSFTKNDYAG-----------WKLKEIKNGRLAMLAFLGFVA 165
Query: 240 EAG-QGKTPLGAL 251
+ Q +PL L
Sbjct: 166 QHNAQPGSPLDQL 178
>gi|359807444|ref|NP_001240880.1| uncharacterized protein LOC100779387 [Glycine max]
gi|255646132|gb|ACU23552.1| unknown [Glycine max]
Length = 268
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 93/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 67 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI-------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N + GE YPGG++FDPL LA D LKV
Sbjct: 179 --------------NGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVK 215
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|156890566|gb|ABU96693.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 267
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 87/200 (43%), Gaps = 53/200 (26%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLQKWVRV 124
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 125 SFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI------- 177
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D LKV
Sbjct: 178 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 213
Query: 222 AEIKHARLAMVAMLIFYFEA 241
EIK+ RLAM +M F+ +A
Sbjct: 214 KEIKNGRLAMFSMFRFFVQA 233
>gi|75101782|sp|Q36718.1|CB120_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-20, chloroplastic;
AltName: Full=LHCI type I CAB-1B-20; AltName:
Full=Light-harvesting complex I 20 kDa protein; Flags:
Precursor
gi|544702|gb|AAB29486.1| light-harvesting complex I, partial (chloroplast) [Hordeum vulgare]
Length = 231
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 34/220 (15%)
Query: 36 SSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYRE 95
S+++ V V A K SW+P ++ +P +LDGSL GD GFDPL L +DP L+W+ +
Sbjct: 23 STRRDVAVQA---KGSWLPGLQ------SPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQ 73
Query: 96 AELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA---DPGAIAPFSFGSLLGTQLLLMGWVE 152
A++++GRWAM V G+ + + + A PG F+ S + +VE
Sbjct: 74 ADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVHMSSTYVE 133
Query: 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPD 212
+RW D NP S + + ++++ E GYP G+ F+PL A + +
Sbjct: 134 IRRWQDIKNPGSVNQD------PIFKSYSLPPHECGYP-GRVFNPLNFAP-------LEN 179
Query: 213 TEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EK E+ + RLAM+A L F + GK P L
Sbjct: 180 KEK-------ELANGRLAMLAFLGFLVQHNVHGKGPFENL 212
>gi|388491152|gb|AFK33642.1| unknown [Lotus japonicus]
Length = 241
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/202 (36%), Positives = 100/202 (49%), Gaps = 46/202 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 113
Query: 124 EA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A P +G+L L + L + +VE +R ++ +PE
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTVLAIEFLAISFVEHQRSME-KDPE--------- 163
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL Y D +K KV EIK+ RLA++
Sbjct: 164 -------------KKKYPGGA-FDPLG---------YSKDPKKFHEYKVKEIKNGRLALL 200
Query: 233 AMLIFYFE--AGQGKTPLGALG 252
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENLA 222
>gi|87313207|gb|ABD37900.1| light-harvesting chlorophyll-a/b binding protein LhcbM3
[Acutodesmus obliquus]
Length = 248
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/201 (35%), Positives = 94/201 (46%), Gaps = 48/201 (23%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-- 121
++L G PGDYG+D GL DP YRE E+IH RWAM +G + A +G+P
Sbjct: 46 DYLTGEFPGDYGWDTAGLSADPQTFSRYREVEVIHARWAMLGALGCITPELLAKNGVPFG 105
Query: 122 ---WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQS 166
WF+AGA + + S + L Q++LMG E+ R
Sbjct: 106 EAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVILMGAAEAYR----------- 154
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
P E+ + YPGGKFFDPL LA PDT L LKV E+K+
Sbjct: 155 ANGGAP-GGFGEDL-----DSLYPGGKFFDPLGLADD-------PDT--LAELKVKELKN 199
Query: 227 ARLAMVAMLIFYFEA---GQG 244
RLAM +M F+ +A GQG
Sbjct: 200 GRLAMFSMFGFFVQAIVTGQG 220
>gi|303324978|pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 44/181 (24%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GA 127
S PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W +A A
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 128 DPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------------- 106
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG FDPL Y D +KL+ LKV EIK+ RLA++A + F
Sbjct: 107 ---------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALLAFVGFCV 147
Query: 240 E 240
+
Sbjct: 148 Q 148
>gi|62638125|gb|AAX92668.1| chloroplast chlorophyll a-b binding protein [Dunaliella salina]
Length = 217
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 14/197 (7%)
Query: 13 LGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSL 72
L + + G +A R+T + VAA ++ W P P LDGS+
Sbjct: 6 LMNKSVASGASLKASTRSVGRITPAPARRSVAAQAAREMWYPGA------TPPAHLDGSM 59
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP-WFEAGADPGA 131
GDYGFDPL LG +P +KW+REAEL +GRWAMAAVVGI G+P W+EAGA
Sbjct: 60 LGDYGFDPLRLGTNPDRMKWFREAELTNGRWAMAAVVGILFTD-LVGLPKWWEAGAQ--- 115
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR--TAENFANATGEQGY 189
P +L ++ + ++E+KR+ + + + P A+ A G +
Sbjct: 116 TYPIDNQTLAIIEIAVFAFLEAKRYEGYKKTGGTGIRFLLPLRPHGHAQPREGAEGAEER 175
Query: 190 PGGKFFDP-LCLAGTIK 205
P G P LCL + +
Sbjct: 176 PPGHACLPGLCLHRSCE 192
>gi|359806176|ref|NP_001241200.1| uncharacterized protein LOC100790960 [Glycine max]
gi|255635333|gb|ACU18020.1| unknown [Glycine max]
Length = 267
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 93/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 126 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI-------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N + GE YPGG++FDPL LA D LKV
Sbjct: 178 --------------NGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVK 214
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 215 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|207853256|gb|ACI25413.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGVLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|242045970|ref|XP_002460856.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
gi|241924233|gb|EER97377.1| hypothetical protein SORBIDRAFT_02g036380 [Sorghum bicolor]
Length = 268
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 93/211 (44%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 125
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 126 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 178
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 179 ---------------NGLDGVGEGNNLYPGGQYFDPLGLAD---------DPVTFAELKV 214
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 215 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|168052965|ref|XP_001778909.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669663|gb|EDQ56245.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 198
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 94/188 (50%), Gaps = 45/188 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P +LDGS PGD+GFDPLGLG+ P L+ ++E+ELIH RWAM AV G+ + +A W
Sbjct: 11 PSYLDGSAPGDFGFDPLGLGEVPENLERFKESELIHARWAMLAVPGVLIPEALGYGNWVS 70
Query: 125 A---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
A A PG A P +G+L L + + + + ES+R N ES P
Sbjct: 71 AQKWAATPGGQATYLGNPVPWGTLPVILAVEFIAIAFAESQR-----NGESD------PE 119
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
R YPGG FDP+ + L+ LK+ EIK+ RLA+VA
Sbjct: 120 KRK------------YPGGA-FDPMGFS----------KGANLEELKLKEIKNGRLALVA 156
Query: 234 MLIFYFEA 241
L F +A
Sbjct: 157 FLGFAIQA 164
>gi|6644196|gb|AAF20948.1|AF207690_1 chlorophyll a/b-binding protein [Daucus carota]
Length = 264
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/211 (35%), Positives = 93/211 (44%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V + W +
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 121
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VES R
Sbjct: 122 DFKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVESFRI------- 174
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D L LKV
Sbjct: 175 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTLAELKV 210
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 211 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|414887113|tpg|DAA63127.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 1
[Zea mays]
gi|414887114|tpg|DAA63128.1| TPA: chlorophyll a-b binding protein of LHCII type III isoform 2
[Zea mays]
Length = 269
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 93/211 (44%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 126
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 127 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 179
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 180 ---------------NGLDGVGEGNNLYPGGQYFDPLGLAD---------DPVTFAELKV 215
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 216 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 246
>gi|145079253|tpg|DAA05906.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm8 [Acetabularia acetabulum]
Length = 220
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 108/246 (43%), Gaps = 54/246 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
+ A+LA T + + ++ V P + W+ G P +L G PGDYG+D GL
Sbjct: 8 NSAVLAQTKSIRNVSRNAVEWYGPDRAKWLGPFSEGDV---PSYLTGEFPGDYGWDTAGL 64
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA-------- 127
DP K YRE ELIH RWAM +G + G ++ WF+AG+
Sbjct: 65 SADPETFKAYREQELIHARWAMLGALGCVTPEILSKYGGVSFGESVWFKAGSQIFQEGGL 124
Query: 128 ----DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
+ I S ++LG Q++LMG +E+ R P + ++ P
Sbjct: 125 DYLGNSNLIHAQSILAILGCQVVLMGLIEAYRVNG--GPLGEGLDPLHP----------- 171
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-G 242
G FDPL LA PDT LKV EIK+ RLAM +M FY +A
Sbjct: 172 --------GDKFDPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFYVQAIV 214
Query: 243 QGKTPL 248
GK P+
Sbjct: 215 TGKGPI 220
>gi|255557841|ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223540996|gb|EEF42554.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 292
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 93/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G V +A++
Sbjct: 94 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIVPEAFNKFGANC 153
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P + + +++L+G E R ++ + E
Sbjct: 154 GPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGGAEYYRIINGLDLE---- 209
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA KD PD + LKV EIK+
Sbjct: 210 ------------------DKLHPGGP-FDPLGLA---KD----PDQAAI--LKVKEIKNG 241
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 242 RLAMFAMLGFYFQA 255
>gi|226509520|ref|NP_001150523.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195613464|gb|ACG28562.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
gi|195639878|gb|ACG39407.1| chlorophyll a-b binding protein of LHCII type III [Zea mays]
Length = 272
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 93/211 (44%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 70 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 129
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 130 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 182
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 183 ---------------NGLDGVGEGNNLYPGGQYFDPLGLAD---------DPVTFAELKV 218
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 219 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 249
>gi|207853232|gb|ACI25401.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEHFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|297792877|ref|XP_002864323.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
gi|297310158|gb|EFH40582.1| light-harvesting chlorophyll binding protein 3 [Arabidopsis lyrata
subsp. lyrata]
Length = 265
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V Q W +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 175
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 176 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 211
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|15239602|ref|NP_200238.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
gi|4741952|gb|AAD28773.1|AF134126_1 Lhcb3 protein [Arabidopsis thaliana]
gi|5002210|gb|AAD37362.1|AF143691_1 type III chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|13605754|gb|AAK32870.1|AF361858_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|13926339|gb|AAK49633.1|AF372917_1 AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|9759500|dbj|BAB10750.1| Lhcb3 chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|16323262|gb|AAL15365.1| AT5g54270/MDK4_9 [Arabidopsis thaliana]
gi|332009094|gb|AED96477.1| light-harvesting chlorophyll B-binding protein 3 [Arabidopsis
thaliana]
Length = 265
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V Q W +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 175
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 176 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 211
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|255569585|ref|XP_002525758.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223534908|gb|EEF36594.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 268
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 93/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L+G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 67 PSYLNGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 127 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N GE YPGG++FDPL LA D LKV
Sbjct: 179 --------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKVK 215
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 216 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|145351847|ref|XP_001420273.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
gi|144580507|gb|ABO98566.1| chlorophyll a/b binding, possibly photosystem II light harvesting
complex [Ostreococcus lucimarinus CCE9901]
Length = 365
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 91/194 (46%), Gaps = 48/194 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P LDGSL GD GFDPLGLGKD L RE EL+H RWAM +VG+ V G A
Sbjct: 174 PAHLDGSLCGDAGFDPLGLGKDD--LPRMRELELLHARWAMLGIVGVAVPELLERYGVAD 231
Query: 118 SGIP-WFEAGA---------DPGAIAPFSFGS------LLGTQLLLMGWVESKRWVDFFN 161
G P W++ GA D + F + Q++LMG E R+V +
Sbjct: 232 LGEPVWWKVGAAKMNSDVSLDYFGLQGFHIAGGSGIAIIAACQVVLMGGPEYARYVGIDS 291
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
E V G++ YPGG FDP ++ D ++ ++ KV
Sbjct: 292 LEPVGVYL--------------PGDKDYPGGAPFDPFKISD---------DADEFEKQKV 328
Query: 222 AEIKHARLAMVAML 235
EIKH RLAM+AML
Sbjct: 329 MEIKHGRLAMIAML 342
>gi|20671|emb|CAA49149.1| chlorophyll a/b-binding protein [Pisum sativum]
gi|141448064|gb|ABO87611.1| chloroplast chlorophyll-a/b binding protein [Pisum sativum]
Length = 265
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 92/209 (44%), Gaps = 50/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R P+
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGL--PD 180
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
G YPGG++FDPL LA D LKV E
Sbjct: 181 V------------------GEGNDLYPGGQYFDPLGLAD---------DPVTFAELKVKE 213
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM +M F+ +A GK PL L
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|303272113|ref|XP_003055418.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
gi|226463392|gb|EEH60670.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
pusilla CCMP1545]
Length = 254
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 95/189 (50%), Gaps = 41/189 (21%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF- 123
P +LDG++P DYGFDPL LG +P L + +EAEL++GRWAM A GI A G+P F
Sbjct: 51 PSYLDGTMPADYGFDPLRLGANPETLPYLQEAELMNGRWAMHATAGILFTDA-VGLPKFW 109
Query: 124 EAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
EAG A+ + +L+ Q+++MG++E+ R F A
Sbjct: 110 EAGE--AALGDWDLKTLVAIQVVVMGFLEAARIRGFM----------------------A 145
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AG 242
TGE G G FDP T +D +KV E+K+ RLAM++ L + A
Sbjct: 146 TGESGVVGNFPFDP-----TGQDS---------PAMKVKEVKNGRLAMMSFLGMVSQYAV 191
Query: 243 QGKTPLGAL 251
G +PL L
Sbjct: 192 TGTSPLEGL 200
>gi|145078670|tpg|DAA05880.1| TPA_inf: chloroplast light-harvesting protein CP29 precursor Lhcb4
[Euglena gracilis]
Length = 263
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 96/238 (40%), Gaps = 90/238 (37%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P+ + P++LDGSLPGD GFDP G K L++
Sbjct: 40 WFPSA------VAPDYLDGSLPGDRGFDPWGFAKPEELLQYTTGTADITLSKNKDEEYVG 93
Query: 93 -------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGA 127
RE ELIHGRWAM V+G VG+A +G+ W AG
Sbjct: 94 KVKEERDVLTGEPLVPWSSAFGLKRLRECELIHGRWAMLFVLGALVGEAVTGVAWQNAGL 153
Query: 128 DP--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
G PFS + ++L MG+VE F ++E
Sbjct: 154 VEAREGYTYFGFSLPFSGSQITWFEVLTMGFVE------IFRNTEMNIE----------- 196
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
++ YPGG FDPL LA D E RLK AEIKHARLAMVA L F
Sbjct: 197 ------KRVYPGGA-FDPLGLASK--------DAETTFRLKEAEIKHARLAMVAFLGF 239
>gi|159468772|ref|XP_001692548.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
gi|158278261|gb|EDP04026.1| light-harvesting protein of photosystem I [Chlamydomonas
reinhardtii]
Length = 213
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 103/226 (45%), Gaps = 51/226 (22%)
Query: 23 KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLG 82
KSQ L R + VVAA + +W+P L P L G+L GD GFDPLG
Sbjct: 5 KSQVAL---GRRAPVRGQRVVAAASARPTWLP------GLNPPAHLKGALAGDNGFDPLG 55
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--WFEAGADPGAIAPFSFGSL 140
LG+D LKWY EAE +GRWAM AV GI +GQ G+ W+EAGA I +L
Sbjct: 56 LGQDEGRLKWYAEAEKTNGRWAMMAVAGI-LGQELLGVTPAWWEAGAKEYDIPA---QAL 111
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
+ ++MG++E KR+ F TG G+ FDP
Sbjct: 112 TPIEFIVMGFLEIKRYQGF----------------------KQTGTSGFINSFPFDP--- 146
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKT 246
G+ P + E+K+ RLAMVA + F +A +T
Sbjct: 147 -----AGMNSPS------MATKEVKNGRLAMVAFIGFCVQALATRT 181
>gi|307104824|gb|EFN53076.1| hypothetical protein CHLNCDRAFT_36644 [Chlorella variabilis]
Length = 275
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 94/189 (49%), Gaps = 34/189 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+LDG+LPGD+GFDPLGL DP F+ +W +E+IH RWAM + G + + I
Sbjct: 63 YLDGTLPGDFGFDPLGL-CDPEGAGGFITPEWLAYSEVIHCRWAMLGIAGFLAPEVLATI 121
Query: 121 ----------PWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQS 166
WF +G P A ++ +L + ++M + E KRW D+ +P SQ
Sbjct: 122 GAIPASPEEAVWFRSGVIPPAGQYGAYWTDAYTLFWVEAIMMNFAELKRWQDYQSPGSQG 181
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
++ E +G YPGG+FF+ L L T E + +L+ EI++
Sbjct: 182 KQYFL----GLEAVFGGSGNPAYPGGQFFNMLNLGKT---------PEAMKKLQTNEIRN 228
Query: 227 ARLAMVAML 235
RLAM+A L
Sbjct: 229 GRLAMIACL 237
>gi|4689380|gb|AAD27877.1|AF139465_1 LHCII type III chlorophyll a/b binding protein [Vigna radiata]
Length = 269
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 93/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 68 PSYLKGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 127
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 128 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N + GE YPGG++FDPL LA D LKV
Sbjct: 180 --------------NGLDGVGEGNNLYPGGQYFDPLGLAD---------DPATFAELKVK 216
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 217 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 246
>gi|87313189|gb|ABD37891.1| light-harvesting chlorophyll-a/b binding protein Lhcb5 [Mesostigma
viride]
Length = 280
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 93/194 (47%), Gaps = 36/194 (18%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW------- 117
P +++G L GDYG+DPLGLG K YR E++HGRWAM VVG+ V +
Sbjct: 78 PAYMNGELAGDYGYDPLGLGNKGGVEK-YRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 136
Query: 118 -SGIPWFEAGA---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
G W+++GA DP A ++ G L L E FF E+ + PW
Sbjct: 137 IKGAVWWDSGAVLLDPSATLTWA-GIPNPVPLALAVIFEVAV---FFLIENYRYQQDGPW 192
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
+ YPGGK+FDPL LA D K D LKV EIK+ RLAM+A
Sbjct: 193 GTGLDPL--------YPGGKYFDPLGLAS---------DPSKADELKVKEIKNGRLAMMA 235
Query: 234 MLIF---YFEAGQG 244
L F YF +G
Sbjct: 236 FLGFVVQYFVTKEG 249
Score = 37.7 bits (86), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAA----VVGIFVGQAWSGIPWF 123
LD PG FDPLGL DP+ + E+ +GR AM A VV FV + W
Sbjct: 196 LDPLYPGGKYFDPLGLASDPSKADELKVKEIKNGRLAMMAFLGFVVQYFVTKEGPYANWS 255
Query: 124 EAGADPGAIAPFSFGSLLGT 143
+ ADP ++F ++LG+
Sbjct: 256 KHLADPFG---YNFLTILGS 272
>gi|384246844|gb|EIE20333.1| light-harvesting chlorophyll a/b-binding protein Lhca2 [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 92/192 (47%), Gaps = 41/192 (21%)
Query: 67 WLDGSLPGDYGFDPLGL----GKDPAFLK--WYREAELIHGRWAMAAVVGIF-------- 112
+L G+LP DYGFDPLGL GK F+ W + +E+IH RWAM G
Sbjct: 35 YLTGALPADYGFDPLGLLDPEGKGAGFVSPAWLQYSEVIHARWAMLGAAGCIAPEILATA 94
Query: 113 --VGQAWSGIPWFEAGADPGA-------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
+ Q + WF++G P A + P+ SL +++L+ + E +RW DF NP
Sbjct: 95 GVIPQTPDEVIWFKSGVIPPAGVYDKYWLDPY---SLFFIEVILVQFAELRRWQDFRNPG 151
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
SQ ++ E +G+ YPGG+FF+ L + L LK E
Sbjct: 152 SQGKQYFL----GLEEVLKGSGDPSYPGGQFFNLFNLGKS-----------DLKELKTKE 196
Query: 224 IKHARLAMVAML 235
+K+ RLAM+A+
Sbjct: 197 LKNGRLAMLAVF 208
>gi|307106802|gb|EFN55047.1| hypothetical protein CHLNCDRAFT_35818 [Chlorella variabilis]
Length = 285
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 98/216 (45%), Gaps = 38/216 (17%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P + ++P + INP L+G+LPGDYG+DPLGL KD L Y+ EL+H RWAM
Sbjct: 51 PDRALFLPGGLMARDEINP-LLNGTLPGDYGYDPLGLAKDAETLSKYQANELLHARWAML 109
Query: 107 AVVGIFV-------GQAWSGIPWFEAGA---DPGAI-----------APFSFGSLLGTQL 145
A G + G G WFE GA + G + P ++ +
Sbjct: 110 AAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPIANISNPLPLFVVVAANV 169
Query: 146 LLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIK 205
LMG E+ R + +P + A + + YPGG FDPL LA
Sbjct: 170 ALMGAAENYRRT------GEGPAGYSPGVGKFDESAYDSMDSLYPGGP-FDPLGLAD--- 219
Query: 206 DGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D E L LKV EIK+ RLAMV+ L F +A
Sbjct: 220 ------DPEVLAELKVKEIKNGRLAMVSFLGFAVQA 249
>gi|312281753|dbj|BAJ33742.1| unnamed protein product [Thellungiella halophila]
Length = 265
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V Q W +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 122
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 123 EFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFRI------- 175
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 176 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 211
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 212 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|145079335|tpg|DAA05910.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm6 [Acetabularia acetabulum]
Length = 244
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 108/239 (45%), Gaps = 58/239 (24%)
Query: 35 TSSKKSVVVAAL----PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
+S+ +++V A+ P + W+ G P +L G PGDYG+D GL DP
Sbjct: 14 SSNVRNIVRNAVEWYGPDRAKWLGPFSEGDV---PSYLTGQFPGDYGWDTAGLSADPETF 70
Query: 91 KWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPG 130
K YRE ELIH RWAM +G + G ++ WF+AG+ +P
Sbjct: 71 KAYREQELIHARWAMLGALGCVTPEILSKYAGVSFGESVWFKAGSQIFQEGGLDYLGNPS 130
Query: 131 AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYP 190
+ S ++LG Q++LMG +E+ R P + ++ P
Sbjct: 131 LVHAQSILAILGCQVVLMGLIEAYRVNG--GPLGEGLDVLHP------------------ 170
Query: 191 GGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 248
G+ FDPL LA PDT LKV EIK+ RLAM +M FY +A GK P+
Sbjct: 171 -GEKFDPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPI 219
Score = 37.4 bits (85), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PG+ FDPLGL DP + E+ +GR AM ++ G +V +G
Sbjct: 163 EGLDVLHPGE-KFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIEN 221
Query: 122 WFEAGADPGAIAPFSFGS 139
W E ADP ++ +++ +
Sbjct: 222 WAEHVADPFSVNAWNYAT 239
>gi|207853208|gb|ACI25389.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 18/141 (12%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
G + F S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 ----GKVEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAP 110
Query: 185 GEQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 111 HECGYPGG-IFNPLNFAPTLE 130
>gi|207853200|gb|ACI25385.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853202|gb|ACI25386.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853204|gb|ACI25387.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
formosana]
gi|207853218|gb|ACI25394.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853220|gb|ACI25395.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853222|gb|ACI25396.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853224|gb|ACI25397.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853226|gb|ACI25398.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853228|gb|ACI25399.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853230|gb|ACI25400.1| chloroplast chlorophyll a-b binding protein 4 [Altingia obovata]
gi|207853234|gb|ACI25402.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853238|gb|ACI25404.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853240|gb|ACI25405.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853248|gb|ACI25409.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853252|gb|ACI25411.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853254|gb|ACI25412.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853260|gb|ACI25415.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853264|gb|ACI25417.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853268|gb|ACI25419.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853274|gb|ACI25422.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853276|gb|ACI25423.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
gi|207853282|gb|ACI25426.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|356559931|ref|XP_003548249.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 289
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 90/194 (46%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 91 PEYLTGEVPGDYGYDPFGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P + + +++L+G E R ++ N E +
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 209
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
+PGG FDPL LA PD L LKV EIK+
Sbjct: 210 ---------------------HPGGP-FDPLGLAND-------PDQAAL--LKVKEIKNG 238
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 239 RLAMFAMLGFYFQA 252
>gi|145079812|tpg|DAA05938.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Micromonas sp. CCMP490]
Length = 309
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 36/191 (18%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ-- 115
N +LDG+LPGD+GFDPLG+ DP F+ +W +E+IHGRWAM V G+ +
Sbjct: 94 NMTYLDGTLPGDFGFDPLGM-SDPEGQGGFVNPQWLAYSEVIHGRWAMLGVAGVVAPEVL 152
Query: 116 -------AWSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPES 164
A +G+ WF++GA P F + ++ ++LM + E KR D++ P S
Sbjct: 153 GGMGIIPADTGLVWFKSGAIP-PQGTFDYWADPTTIFWVNMVLMNFAEVKRGQDYWYPGS 211
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
Q TP + FA +G YPGGK+F+ L T + +++ EI
Sbjct: 212 QG---ETPLMGWEKGFA-GSGAPAYPGGKYFNFANLGKT-----------DMAKMQKKEI 256
Query: 225 KHARLAMVAML 235
K+ RLAM+A L
Sbjct: 257 KNGRLAMMAFL 267
>gi|255076759|ref|XP_002502049.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
gi|226517314|gb|ACO63307.1| chlorophyll a/b-binding protein [Micromonas sp. RCC299]
Length = 393
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/256 (33%), Positives = 115/256 (44%), Gaps = 52/256 (20%)
Query: 12 GLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAAL-PPKKSWIPAVKGGGNLINPEWLDG 70
GL S + + +A A R ++ ++ + A P ++ ++P G PE LDG
Sbjct: 142 GLAKSIEDRRPELEAERARVERERAAARATMPAHYGPTRRKFLP---DGFGYPFPEHLDG 198
Query: 71 SLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS-------GIP- 121
+L GD GFDPLGL P L YRE EL+HGRWAM VVG V +A + G P
Sbjct: 199 TLCGDAGFDPLGLASGSPGDLDRYRELELLHGRWAMLGVVGAAVPEALARFGGLELGEPV 258
Query: 122 WFEAGA----------DPGAIAPFSFGSLLG------TQLLLMGWVESKRWVDFFNPESQ 165
W++ GA D + F G QL+LMG E R V
Sbjct: 259 WWKVGAAKLNSPDLALDYLGLGGFHIAGSSGLAVIAACQLVLMGGPEYARKV-------- 310
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G++ YPGG FDP ++ D +R KVAE+K
Sbjct: 311 GIDSLVPVG------VYLPGDRDYPGGAPFDPFGVSA---------DAAVFERQKVAEMK 355
Query: 226 HARLAMVAMLIFYFEA 241
H RLAMVAML + +A
Sbjct: 356 HGRLAMVAMLGCFAQA 371
Score = 43.5 bits (101), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
D PG FDP G+ D A + + AE+ HGR AM A++G F QAW+
Sbjct: 325 DRDYPGGAPFDPFGVSADAAVFERQKVAEMKHGRLAMVAMLGCFA-QAWA 373
>gi|56809383|gb|AAW31513.1| light-harvesting chlorophyll-a/b binding protein Lhcb3 [Pisum
sativum]
Length = 265
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 92/209 (44%), Gaps = 50/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V Q W +
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWVRV 122
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R P+
Sbjct: 123 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQIVLMGLVEGFRINGL--PD 180
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
G YPGG++FDPL LA D LKV E
Sbjct: 181 V------------------GEGNDLYPGGQYFDPLGLAD---------DPVTFAELKVKE 213
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM +M F+ +A GK PL L
Sbjct: 214 IKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|87313177|gb|ABD37885.1| light-harvesting chlorophyll-a/b binding protein LhcbM1 [Mesostigma
viride]
gi|87313179|gb|ABD37886.1| light-harvesting chlorophyll-a/b binding protein LhcbM2 [Mesostigma
viride]
gi|145079623|tpg|DAA05921.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Mesostigma viride]
Length = 267
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 112/255 (43%), Gaps = 59/255 (23%)
Query: 26 ALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLIN--------PEWLDGSLPGDYG 77
A++A +V + K + VV A K + + G + + P +L G PGDYG
Sbjct: 14 AVVAPAQKVEAKKINTVVEARRTKSATPDSPFYGPDRVTFLGPFTDVPSYLTGEYPGDYG 73
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA---WSGIP-----WFEAGA-- 127
+D +GL DP YRE EL+H RWAM +G F+ +A +SGI WF+AG
Sbjct: 74 WDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGINFGESVWFKAGGQI 133
Query: 128 ----------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 177
+P + S + + Q LLMG VE R P
Sbjct: 134 FQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRV------------GGGPLGEA- 180
Query: 178 ENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
G++ YPGG F DPL L D + L LKV EIK+ RLAM +M +
Sbjct: 181 -------GDKMYPGGSF-DPLGLGD---------DPDTLAELKVKEIKNGRLAMFSMFGY 223
Query: 238 YFEA-GQGKTPLGAL 251
+ +A GK P+ L
Sbjct: 224 FIQAIVTGKGPVENL 238
>gi|116784586|gb|ABK23400.1| unknown [Picea sitchensis]
gi|148907739|gb|ABR16996.1| unknown [Picea sitchensis]
gi|224284102|gb|ACN39788.1| unknown [Picea sitchensis]
Length = 247
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 88/189 (46%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGLG P L+ Y+E+ELIH RWAM AV G+ + +A W
Sbjct: 56 RPAHLDGSAPGDFGFDPLGLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWV 115
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG A + F +L L M + ES+R
Sbjct: 116 EAQKWAAIPGGQATYLGVPVPWGYFPIILSIFFLKMAFAESQR----------------- 158
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N ++ YPGG F DPL + D K + KV EIK+ RLA++
Sbjct: 159 ------NGEPDLEKRKYPGGAF-DPLGFSK---------DPAKFEEYKVKEIKNGRLALL 202
Query: 233 AMLIFYFEA 241
A + F +A
Sbjct: 203 AFVGFCVQA 211
Score = 38.9 bits (89), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 10/53 (18%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPG 130
FDPLG KDPA + Y+ E+ +GR A+ A VG V +A A+PG
Sbjct: 174 FDPLGFSKDPAKFEEYKVKEIKNGRLALLAFVGFCV----------QASANPG 216
>gi|207853280|gb|ACI25425.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPGNLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|356559472|ref|XP_003548023.1| PREDICTED: chlorophyll a-b binding protein 6A, chloroplastic-like
[Glycine max]
Length = 246
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 98/202 (48%), Gaps = 46/202 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH RWAM AV GI V +A W
Sbjct: 56 RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 115
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE
Sbjct: 116 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQRSME-KDPE--------- 165
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL Y D + KV EIK+ RLA++
Sbjct: 166 -------------KKKYPGGA-FDPLG---------YSKDPKTFHEYKVKEIKNGRLALL 202
Query: 233 AMLIFYFE--AGQGKTPLGALG 252
A + F + A G PL L
Sbjct: 203 AFVGFCVQQSAYPGTGPLENLA 224
>gi|19421770|gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 103/226 (45%), Gaps = 51/226 (22%)
Query: 23 KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLG 82
KSQ L R + VVAA + +W+P L P L G+L GD GFDPLG
Sbjct: 5 KSQVAL---GRRAPVRGQRVVAAASARPTWLP------GLNPPAHLKGALAGDNGFDPLG 55
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--WFEAGADPGAIAPFSFGSL 140
LG+D LKWY EAE +GRWAM AV GI +GQ G+ W+EAGA I +L
Sbjct: 56 LGQDEGRLKWYAEAEKTNGRWAMMAVAGI-LGQELLGVTPAWWEAGAKEYDI---PAQAL 111
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
+ ++MG++E KR+ F TG G+ FDP
Sbjct: 112 TPIEFIVMGFLEIKRYQGF----------------------KQTGTSGFINSFPFDP--- 146
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQGKT 246
G+ P + E+K+ RLAMVA + F +A +T
Sbjct: 147 -----AGMNSPS------MATKEVKNGRLAMVAFIGFCVQALATRT 181
>gi|145079356|tpg|DAA05911.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm5 [Acetabularia acetabulum]
Length = 244
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 94/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G +
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++LG Q++LMG +E+ R P
Sbjct: 105 FGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNG--GPLG 162
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LKV EI
Sbjct: 163 EGLDVLHP-------------------GEKFDPLGLADD-------PDT--FAELKVKEI 194
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M FY +A GK P+
Sbjct: 195 KNGRLAMFSMFGFYVQAIVTGKGPI 219
Score = 37.4 bits (85), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PG+ FDPLGL DP + E+ +GR AM ++ G +V +G
Sbjct: 163 EGLDVLHPGE-KFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIEN 221
Query: 122 WFEAGADPGAIAPFSFGS 139
W E ADP ++ +++ +
Sbjct: 222 WAEHVADPFSVNAWNYAT 239
>gi|207853244|gb|ACI25407.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFVLFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|384250359|gb|EIE23838.1| hypothetical protein COCSUDRAFT_28488 [Coccomyxa subellipsoidea
C-169]
Length = 275
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/204 (33%), Positives = 93/204 (45%), Gaps = 46/204 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGI 120
+P +L+G PGDYG+D GL DP YRE E+IH RWAM +GI V + + +
Sbjct: 81 SPSYLNGEFPGDYGWDTAGLSADPETFSRYREIEVIHARWAMLGALGIVVPELLDQTNHV 140
Query: 121 PWFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
WF+AGA PG I + + + Q++LMG +E R P + ++
Sbjct: 141 AWFDAGATIFGPKGIQYLGVPGLINAKNIIATVAVQVILMGAIEGYRVNG--GPAGEGLD 198
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P G+ FDPL LA PDT LKV EIK+ R
Sbjct: 199 KVYP-------------------GESFDPLGLADD-------PDT--FAELKVKEIKNGR 230
Query: 229 LAMVAMLIFYFEA-GQGKTPLGAL 251
LAM + F+ +A GK P+ L
Sbjct: 231 LAMFSNFGFFVQAIVTGKGPIANL 254
>gi|356530963|ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 291
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 90/194 (46%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 93 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 152
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P + + +++L+G E R ++ N E +
Sbjct: 153 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 211
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
+PGG FDPL LA PD L LKV EIK+
Sbjct: 212 ---------------------HPGGP-FDPLGLAND-------PDQAAL--LKVKEIKNG 240
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 241 RLAMFAMLGFYFQA 254
>gi|207853250|gb|ACI25410.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPRWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|87313181|gb|ABD37887.1| light-harvesting chlorophyll-a/b binding protein LhcbM3 [Mesostigma
viride]
gi|87313183|gb|ABD37888.1| light-harvesting chlorophyll-a/b binding protein LhcbM5 [Mesostigma
viride]
gi|87313185|gb|ABD37889.1| light-harvesting chlorophyll-a/b binding protein LhcbM4 [Mesostigma
viride]
gi|145079700|tpg|DAA05924.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Mesostigma viride]
gi|145079723|tpg|DAA05925.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm2 [Mesostigma viride]
gi|145079757|tpg|DAA05931.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Mesostigma viride]
Length = 267
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 94/208 (45%), Gaps = 51/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA---WSGIP 121
P +L G PGDYG+D +GL DP YRE EL+H RWAM +G F+ +A +SGI
Sbjct: 61 PSYLTGEYPGDYGWDTVGLSADPETFAAYREIELMHARWAMLGTLGCFLPEALEKYSGIN 120
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG +P + S + + Q LLMG VE R
Sbjct: 121 FGESVWFKAGGQIFQEGGLDYLGNPSLVHAQSIIATVFIQALLMGLVEGYRV-------- 172
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P G++ YPGG F DPL L D + L LKV EI
Sbjct: 173 ----GGGPLGEA--------GDKMYPGGSF-DPLGLGD---------DPDTLAELKVKEI 210
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M ++ +A GK P+ L
Sbjct: 211 KNGRLAMFSMFGYFIQAIVTGKGPVENL 238
>gi|115794|sp|P27489.1|CB23_SOLLC RecName: Full=Chlorophyll a-b binding protein 13, chloroplastic;
AltName: Full=LHCII type III CAB-13; Flags: Precursor
gi|19277|emb|CAA42818.1| LHCII type III [Solanum lycopersicum]
Length = 265
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 93/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L+G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 64 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVD 123
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 124 FKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 175
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N GE YPGG++FDPL LA D LKV
Sbjct: 176 --------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPTTFAELKVK 212
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 213 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|20788|emb|CAA41404.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 246
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 92/189 (48%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPL LG P L+ Y+E+ELIH RWAM AV G+ + +A W
Sbjct: 55 RPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWV 114
Query: 124 EA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG+ A P +G L L + L + +VES+R
Sbjct: 115 EAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR----------------- 157
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N ++ YPGG FDPL G KD V K KV EIK+ RLA++
Sbjct: 158 ------NGEPDPEKRKYPGGA-FDPL---GFSKDPV------KFKEYKVKEIKNGRLALL 201
Query: 233 AMLIFYFEA 241
A + F +A
Sbjct: 202 AFVGFCVQA 210
>gi|356535308|ref|XP_003536189.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 287
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 93/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 89 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 148
Query: 121 ----PWFEAGA---DPGAI----APFSFGSLLGT--QLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P +L +++L+G E R ++ + E
Sbjct: 149 GPEAVWFKTGALLLDGGTLNYFGKPIPINLILAVVAEIVLVGGAEYYRIINGLDLE---- 204
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA KD PD L LKV EIK+
Sbjct: 205 ------------------DKLHPGGP-FDPLGLA---KD----PDQAAL--LKVKEIKNG 236
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 237 RLAMFAMLGFYFQA 250
>gi|356576567|ref|XP_003556402.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Glycine max]
Length = 288
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 93/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 90 PEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 149
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P + + +++L+G E R ++ + E
Sbjct: 150 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVVAEIVLVGGAEYYRIINGLDLE---- 205
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA KD PD L LKV EIK+
Sbjct: 206 ------------------DKLHPGGP-FDPLGLA---KD----PDQAAL--LKVKEIKNG 237
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 238 RLAMFAMLGFYFQA 251
>gi|308812794|ref|XP_003083704.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
gi|63029289|gb|AAY27543.1| chloroplast chlorophyll a/b-binding protein CP29 precursor Lhcb4
[Ostreococcus tauri]
gi|116055585|emb|CAL58253.1| CP29-like light-harvesting chlorophyll a/b binding protein chlor
(IC) [Ostreococcus tauri]
Length = 257
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 109/268 (40%), Gaps = 90/268 (33%)
Query: 38 KKSVVVAALPPKKSWIPAVKGGGNL------INPEWLDGSLPGDYGFDPLGLGKDPAFLK 91
K +V A P +K PA K G + P WLDGSLPGD GFDP GLGK +L+
Sbjct: 19 KTAVKKTARPVRKG--PAPKAGDECLWRPGAVRPAWLDGSLPGDRGFDPFGLGKPAEYLQ 76
Query: 92 W--------------------------------------------YREAELIHGRWAMAA 107
+ +RE EL+H RWAM
Sbjct: 77 FDLDALDGSAARNPSGNVIGKLKKADSKPKARTIVPYDEAFDIMRFRECELLHSRWAMLG 136
Query: 108 VVGIFVGQAWSGIPWFEAGA----DP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFF 160
+VG +A +GI W +AG P G + L ++L MG++E
Sbjct: 137 LVGAAAAEAATGITWADAGKIELEQPQYLGFPIQLTVTQLTIIEVLAMGYLE-------- 188
Query: 161 NPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLK 220
+R+AE N ++ YPGG FDPL V D ++ RLK
Sbjct: 189 ------------IARSAELDQN---KRMYPGGA-FDPLGY-------VAKADAQEEFRLK 225
Query: 221 VAEIKHARLAMVAMLIFYFEAGQGKTPL 248
AE+KH RLAM MLI EA G+ L
Sbjct: 226 TAELKHGRLAMAGMLIISIEAATGRGTL 253
>gi|40714511|dbj|BAD06919.1| light-harvesting chlorophyll-a/b protein of photosystem I (Type
III) [Chlamydomonas reinhardtii]
Length = 267
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 91/191 (47%), Gaps = 39/191 (20%)
Query: 67 WLDGSLPGDYGFDPLGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDGSLPGD+GFDPLGL DP F+ KW + +E+IH RWAM G +
Sbjct: 56 YLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAA 114
Query: 118 ------SGIPWFEAGADPGA-------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ I WFE+G P A P+ ++ +++ M + E +R DF P S
Sbjct: 115 GLIPDATNIKWFESGVIPPAGSYNGYWADPY---TIFFVEIVAMQFAELRRLQDFRYPGS 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
++ E +G+ YPGG FF+ L T + LK+ EI
Sbjct: 172 MGQQYFL----GLEAIFKGSGDAAYPGGPFFNLFNLGKT---------EAAMKELKLKEI 218
Query: 225 KHARLAMVAML 235
K+ RLAM+AML
Sbjct: 219 KNGRLAMLAML 229
>gi|303281804|ref|XP_003060194.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
gi|226458849|gb|EEH56146.1| chlorophyll a/b-binding protein [Micromonas pusilla CCMP1545]
Length = 391
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 91/203 (44%), Gaps = 49/203 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS---GIP 121
P L G+L GD GFDPL LGK P L E EL+H RWAM AVVG+ V +A S +P
Sbjct: 188 PPHLTGTLAGDRGFDPLRLGKTPESLARGVELELLHARWAMLAVVGVAVPEALSIAGALP 247
Query: 122 ---------WFEAGADPGAIAPFSFGSLLG--------------TQLLLMGWVESKRWVD 158
W++ GA ++G L G Q +LMG E R+V
Sbjct: 248 EGAALAEPVWWKVGAAKLNGESLNYGGLGGFVIAGKQGVAVIAACQAVLMGGPEYARYVG 307
Query: 159 FFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDR 218
+ E V G+ YPGG FDP L+ D ++ R
Sbjct: 308 IRSLEPVGVYL--------------PGDANYPGGAPFDPFGLSD---------DADRFAR 344
Query: 219 LKVAEIKHARLAMVAMLIFYFEA 241
KV EI+H RLAMVAML + +A
Sbjct: 345 QKVIEIEHGRLAMVAMLGCFAQA 367
>gi|207853272|gb|ACI25421.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGTLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|237510764|gb|ACQ99368.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Ankistrodesmus convolutus]
Length = 248
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/204 (35%), Positives = 94/204 (46%), Gaps = 50/204 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
PE+L G PGDYG+D GL DPA YRE ELIH RWAM +G V + A +G P
Sbjct: 45 TPEYLTGEFPGDYGWDTAGLSADPATFARYREIELIHARWAMLGALGCVVPELLAKNGTP 104
Query: 122 ------WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P I S + L Q+++MG ES R+
Sbjct: 105 LPDGGVWFKAGAAIFADDGLNYLGNPNLIHAQSILATLAFQVVVMGAAESFRF------- 157
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
P N ++ YPG + FDP+ LA D + LKV E
Sbjct: 158 ----NGGAPGGFLEGN------DRLYPGDQ-FDPMGLA---------EDPDTFAELKVKE 197
Query: 224 IKHARLAMVAMLIFYFEA---GQG 244
IK+ RLAM +M F+ +A GQG
Sbjct: 198 IKNGRLAMFSMFGFFVQAIVTGQG 221
>gi|224117282|ref|XP_002317529.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222860594|gb|EEE98141.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 92/210 (43%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 173
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N GE YPGG++FDPL LA D LKV
Sbjct: 174 --------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPTTFAELKVK 210
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 211 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|449447521|ref|XP_004141516.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
gi|449510691|ref|XP_004163735.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Cucumis sativus]
Length = 288
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 90/194 (46%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 90 PEYLNGEVPGDYGYDPFGLSKKPEDFTKYQAFELIHARWAMLGAAGFIIPEAFNKFGANC 149
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R ++ N E
Sbjct: 150 GPEAVWFKTGALLLDGNTLNYFGNNIPINLIVAVIAEVVLVGGAEYYRIINGLNFE---- 205
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG F DPL LA D ++ LKV EIK+
Sbjct: 206 ------------------DKLHPGGPF-DPLGLAD---------DPDQAAILKVKEIKNG 237
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 238 RLAMFAMLGFYFQA 251
>gi|145079271|tpg|DAA05907.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm4 [Acetabularia acetabulum]
Length = 219
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 69/205 (33%), Positives = 94/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G +
Sbjct: 26 PSYLKGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 85
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++LG Q++LMG +E+ R P
Sbjct: 86 FGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNG--GPLG 143
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LK+ EI
Sbjct: 144 EGLDTLHP-------------------GESFDPLGLADD-------PDT--FAELKIKEI 175
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M FY +A GK P+
Sbjct: 176 KNGRLAMFSMFGFYVQAIVTGKGPI 200
>gi|224122902|ref|XP_002330392.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
gi|222871777|gb|EEF08908.1| light-harvesting complex II protein Lhcb3 [Populus trichocarpa]
Length = 263
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 92/210 (43%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVD 121
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 122 FKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 173
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N GE YPGG++FDPL LA D LKV
Sbjct: 174 --------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPATFAELKVK 210
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 211 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|255645788|gb|ACU23386.1| unknown [Glycine max]
Length = 289
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 90/194 (46%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 91 PEYLTGEVPGDYGYDPSGLSKKPEDFSKYQAFELIHARWAMLGAAGFIIPEAFNKYGANC 150
Query: 121 ----PWFEAGA---DPGAI------APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G + P + + +++L+G E R ++ N E +
Sbjct: 151 GPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGAEYYRIINGLNFEDKL- 209
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
+PGG FDPL LA PD L LKV EIK+
Sbjct: 210 ---------------------HPGGP-FDPLGLAND-------PDQAAL--LKVKEIKNG 238
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML FYF+A
Sbjct: 239 RLAMFAMLGFYFQA 252
>gi|145079840|tpg|DAA05941.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca2 [Micromonas sp. CCMP490]
Length = 245
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 104/225 (46%), Gaps = 45/225 (20%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDP 87
L + R + + V A + W+P + P +LDG++ GDYGFDPL LG++
Sbjct: 11 LRASVRAPVKARGMSVKAAAGPQHWLPGSE------PPAYLDGTMAGDYGFDPLRLGQNA 64
Query: 88 AFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLL 147
L + +EAEL++GRWAM A GI A G+P F D A+ + +L+ Q+++
Sbjct: 65 ETLPYLQEAELMNGRWAMHATAGILFTDA-VGLPKFWEAGD-AALGDWDLKTLVAIQVVV 122
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
MG++E+ R F+ ATGE G G FD
Sbjct: 123 MGFLEAARIRGFY----------------------ATGESGVVGNFPFD----------- 149
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
P + +KV EIK+ RLAM++ L + A G +PL L
Sbjct: 150 ---PSGQDSPAMKVKEIKNGRLAMMSFLGMVSQYAVTGTSPLEGL 191
>gi|449463148|ref|XP_004149296.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
gi|449532805|ref|XP_004173369.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Cucumis sativus]
Length = 264
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/210 (34%), Positives = 94/210 (44%), Gaps = 54/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L+G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 63 PSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWLKVD 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 123 FKEPVWFKAGSQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI-------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
N + GE YPGG++FDPL LA D LKV
Sbjct: 175 --------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKVK 211
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 212 EIKNGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|207853266|gb|ACI25418.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 87.8 bits (216), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFTLFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|159483767|ref|XP_001699932.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
gi|158281874|gb|EDP07628.1| chlorophyll a-b binding protein [Chlamydomonas reinhardtii]
Length = 399
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 93/204 (45%), Gaps = 45/204 (22%)
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AW 117
G L + E L G++ GD GFDPLGL K+ A Y+EAEL+H RWAM VVG V + A
Sbjct: 187 GPLGSAEHLIGAIAGDAGFDPLGLSKEQASFAKYQEAELLHARWAMLGVVGCLVPELLAL 246
Query: 118 SGIP-----WFEAGADP---------GAIAPFS------FGSLLGTQLLLMGWVESKRWV 157
G+ W++ GA G I F G + Q +LMG E R+V
Sbjct: 247 RGVDLGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYV 306
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
+ E V G+Q YPGG FDPL Y D +
Sbjct: 307 GIRSLEPVGVFL--------------PGDQNYPGGGPFDPLN---------YAADADGFV 343
Query: 218 RLKVAEIKHARLAMVAMLIFYFEA 241
V E+K+ RLAM+AML F+ +A
Sbjct: 344 EQAVKEVKNGRLAMLAMLGFFVQA 367
>gi|226872|prf||1609235A chlorophyll a/b binding protein
Length = 273
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 118/243 (48%), Gaps = 46/243 (18%)
Query: 25 QALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYG 77
Q + + ++ + K S VV A + P VK G N + +LDGSLPGD+G
Sbjct: 21 QIIGSRISQSVTRKASFVVRA-----ASTPPVKQGANRQLWFASKQSLSYLDGSLPGDFG 75
Query: 78 FDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPW 122
FDPLGL DP F+ KW E+I+GR+AM G +G+A + + W
Sbjct: 76 FDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAW 134
Query: 123 FEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
F+ G P A +++ +L ++ LMG+ E +R+ D+ P S ++ E
Sbjct: 135 FQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLE 189
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
+G+ YPGG F+PL D + + LK+ EIK+ RLAM+A+L ++
Sbjct: 190 KGLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAILGYF 240
Query: 239 FEA 241
+A
Sbjct: 241 IQA 243
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGV 248
>gi|79320443|ref|NP_001031217.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
gi|332195726|gb|AEE33847.1| light-harvesting complex I chlorophyll a/b binding protein 3
[Arabidopsis thaliana]
Length = 218
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 34/189 (17%)
Query: 71 SLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ--------- 115
SLPGDYGFDPLGL DP F+ +W E+I+GR+AM G +
Sbjct: 14 SLPGDYGFDPLGL-SDPEGTGGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIP 72
Query: 116 AWSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 171
A + +PWF+ G P A +++ +L ++ LMG+ E +R D++NP S ++
Sbjct: 73 AETALPWFQTGVIPPA-GTYTYWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL 131
Query: 172 PWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAM 231
E +G YPGG FF+PL D + L LK+ E+K+ RLAM
Sbjct: 132 ----GLEKGLAGSGNPAYPGGPFFNPLGFG---------KDEKSLKELKLKEVKNGRLAM 178
Query: 232 VAMLIFYFE 240
+A+L ++ +
Sbjct: 179 LAILGYFIQ 187
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 144 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 193
>gi|159471686|ref|XP_001693987.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
gi|15430556|dbj|BAB64413.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|15430564|dbj|BAB64417.1| light-harvesting chlorophyll-a/b binding protein LhcII-3
[Chlamydomonas reinhardtii]
gi|158277154|gb|EDP02923.1| light-harvesting protein of photosystem II [Chlamydomonas
reinhardtii]
Length = 249
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + A +GIP
Sbjct: 49 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 108
Query: 122 -----WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 109 FGEAVWFKAGAQIFAEGGLNY---LGNENLI---------------HAQSIIATLAFQVV 150
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 210
Query: 237 FYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 211 FFVQAIVTGKGPIQNL 226
>gi|217071344|gb|ACJ84032.1| unknown [Medicago truncatula]
gi|388494662|gb|AFK35397.1| unknown [Medicago truncatula]
Length = 282
Score = 87.4 bits (215), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 63/183 (34%), Positives = 92/183 (50%), Gaps = 44/183 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH RWAM AV GI V +A W
Sbjct: 55 RPSYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE
Sbjct: 115 KAQEWAALPGGQATYLGNPVPWGTLPTILVIEFLSIAFVEHQRSME-KDPE--------- 164
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL Y D +K K+ E+K+ RLA++
Sbjct: 165 -------------KKKYPGGA-FDPL---------GYSKDPKKFHEYKIKEVKNGRLALL 201
Query: 233 AML 235
A +
Sbjct: 202 AFV 204
Score = 40.0 bits (92), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 77 GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP Y+ E+ +GR A+ A VGI V Q
Sbjct: 172 AFDPLGYSKDPKKFHEYKIKEVKNGRLALLAFVGIVVQQT 211
>gi|145079437|tpg|DAA05915.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm7 [Acetabularia acetabulum]
Length = 244
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 70/205 (34%), Positives = 93/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G +
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILSKYAGVS 104
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG +E+ R P
Sbjct: 105 LGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNG--GPLG 162
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LKV EI
Sbjct: 163 KGLDVLHP-------------------GEKFDPLGLADD-------PDT--FAELKVKEI 194
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M FY +A GK P+
Sbjct: 195 KNGRLAMFSMFGFYVQAIVTGKGPI 219
>gi|207853270|gb|ACI25420.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 78/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +A+L++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAKLVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|207853258|gb|ACI25414.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + + A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQCSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG F+PL A T++
Sbjct: 112 ECGYPGG-IFNPLNFAPTLE 130
>gi|116784661|gb|ABK23427.1| unknown [Picea sitchensis]
gi|116785117|gb|ABK23601.1| unknown [Picea sitchensis]
Length = 247
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 89/189 (47%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPL LG P L+ Y+E+ELIH RWAM AV G+ + +A W
Sbjct: 56 RPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWV 115
Query: 124 EA---GADPGAI-----APFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG AP +G L L + L + +VES+R
Sbjct: 116 EAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR----------------- 158
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N ++ YPGG FDPL + D K KV EIK+ RLA++
Sbjct: 159 ------NGEPDPEKRKYPGGA-FDPLGFSK---------DPAKFKEYKVKEIKNGRLALL 202
Query: 233 AMLIFYFEA 241
A + F +A
Sbjct: 203 AFVGFCVQA 211
>gi|159486759|ref|XP_001701405.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
gi|158271707|gb|EDO97521.1| light-harvesting chlorophyll-a/b protein of photosystem I, type III
[Chlamydomonas reinhardtii]
Length = 298
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 91/188 (48%), Gaps = 33/188 (17%)
Query: 67 WLDGSLPGDYGFDPLGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDGSLPGD+GFDPLGL DP F+ KW + +E+IH RWAM G +
Sbjct: 56 YLDGSLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAA 114
Query: 118 ------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
+ I WFE+G P A + + ++ +++ M + E +R DF P S
Sbjct: 115 GLIPDATNIKWFESGVIPPAGSYNGYWADPYTIFFVEIVAMQFAELRRLQDFRYPGSMGQ 174
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ E +G+ YPGG FF+ L T + LK+ EIK+
Sbjct: 175 QYFL----GLEAIFKGSGDAAYPGGPFFNLFNLGKT---------EAAMKELKLKEIKNG 221
Query: 228 RLAMVAML 235
RLAM+AML
Sbjct: 222 RLAMLAML 229
>gi|225461315|ref|XP_002284493.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 266
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 125 FKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P N YPGG++FDPL LA D LKV EI
Sbjct: 178 -----GLPGVGDGNNL--------YPGGQYFDPLGLAD---------DPVTFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Score = 38.1 bits (87), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PG FDPLGL DP + E+ +GR AM ++ G F
Sbjct: 179 LPGVGDGNNLY---------PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 229
Query: 113 VGQAWSG 119
V +G
Sbjct: 230 VQAIVTG 236
>gi|295798043|emb|CBL86548.1| chlorophyll a/b binding protein [Olea europaea]
Length = 179
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 86/169 (50%), Gaps = 41/169 (24%)
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLL 141
L+ +RE ELIHGRW M A +G + +G+ W +AG + G PFS +L+
Sbjct: 21 LQRFRECELIHGRWGMLATLGALTVEWLTGVTWQDAGKVELVEGASYLGQPLPFSITTLI 80
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
++L++G++E +R + +PE ++ YPGG FFDPL LA
Sbjct: 81 WIEVLVIGYIEFQRNAE-VDPE----------------------KRXYPGGSFFDPLGLA 117
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLG 249
D EK L++AEIKHARLAMVA L F + A GK PL
Sbjct: 118 A---------DPEKKATLQLAEIKHARLAMVAFLGFAVQAAATGKGPLN 157
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
++PE PG FDPLGL DP + AE+ H R AM A +G V A +G
Sbjct: 98 VDPE--KRXYPGGSFFDPLGLAADPEKKATLQLAEIKHARLAMVAFLGFAVQAAATG 152
>gi|116794024|gb|ABK26977.1| unknown [Picea sitchensis]
Length = 247
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 89/189 (47%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPL LG P L+ Y+E+ELIH RWAM AV G+ + +A W
Sbjct: 56 RPPHLDGSAPGDFGFDPLRLGVVPENLERYKESELIHCRWAMLAVPGVLIPEALGLGNWV 115
Query: 124 EA---GADPGAI-----APFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG AP +G L L + L + +VES+R
Sbjct: 116 EAQKWAAIPGNQATYLGAPVPWGYLPVILAVEFLSIAFVESQR----------------- 158
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N ++ YPGG FDPL + D K KV EIK+ RLA++
Sbjct: 159 ------NGEPDPEKRKYPGGA-FDPLGFSK---------DPAKFKEYKVKEIKNGRLALL 202
Query: 233 AMLIFYFEA 241
A + F +A
Sbjct: 203 AFVGFCVQA 211
>gi|115472785|ref|NP_001059991.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|34393384|dbj|BAC83393.1| putative chlorophyll A-B binding protein of LHCII type III,
chloroplast precursor (CAB) [Oryza sativa Japonica
Group]
gi|113611527|dbj|BAF21905.1| Os07g0562700 [Oryza sativa Japonica Group]
gi|125600722|gb|EAZ40298.1| hypothetical protein OsJ_24743 [Oryza sativa Japonica Group]
gi|215678934|dbj|BAG96364.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679381|dbj|BAG96521.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692555|dbj|BAG87975.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737394|dbj|BAG96323.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737576|dbj|BAG96706.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737599|dbj|BAG96729.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767446|dbj|BAG99674.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215767453|dbj|BAG99681.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 266
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 90/209 (43%), Gaps = 50/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 64 TPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 124 DFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL---- 179
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
G YPGG++FDPL LA D LKV E
Sbjct: 180 ----------------PGVGDGNDLYPGGQYFDPLGLAD---------DPVTFAELKVKE 214
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM +M F+ +A GK PL L
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|20790|emb|CAA41405.1| Type 1 chlorophyll a /b-binding protein [Pinus sylvestris]
Length = 207
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/189 (38%), Positives = 92/189 (48%), Gaps = 44/189 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPL LG P L+ Y+E+ELIH RWAM AV G+ + +A W
Sbjct: 16 RPPHLDGSAPGDFGFDPLRLGVIPENLERYKESELIHCRWAMLAVPGMLIPEALGLGNWV 75
Query: 124 EA---GADPGAIA-----PFSFGSL---LGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
EA A PG+ A P +G L L + L + +VES+R
Sbjct: 76 EAQKWAAIPGSQATYFGVPVPWGYLPIVLAVEFLAIAFVESQR----------------- 118
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N ++ YPGG FDPL G KD V K KV EIK+ RLA++
Sbjct: 119 ------NGEPDPEKRKYPGGA-FDPL---GFSKDPV------KFKEYKVKEIKNGRLALL 162
Query: 233 AMLIFYFEA 241
A + F +A
Sbjct: 163 AFVGFCVQA 171
>gi|255070403|ref|XP_002507283.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
gi|226522558|gb|ACO68541.1| chlorophyll a/b-binding protein, chloroplast precursor [Micromonas
sp. RCC299]
Length = 247
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 50/234 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVA-----ALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGF 78
+QA G N V SS + A+ W+P + P +LDG++ GDYGF
Sbjct: 5 TQASFFGLNSVRSSATKKIARRHHGFAVRAGTHWLPGTQ------PPPYLDGTMAGDYGF 58
Query: 79 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFG 138
DPL LG +P L + +EAEL++GRWAM A GI A W+EAG A+ ++
Sbjct: 59 DPLRLGANPDTLPYLQEAELMNGRWAMHATAGILFTDAVGLPKWWEAGE--AALGDWNLQ 116
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
+L+ Q+++M ++E+ R F TG+ G G FDP
Sbjct: 117 TLVAFQVVIMAFLEAARIRGFMT----------------------TGQSGVIGNFPFDP- 153
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
T +D ++V E+K+ RLAM++ L + A G +PL L
Sbjct: 154 ----TGQDS---------PEMRVKEVKNGRLAMMSFLGMVSQYAVTGTSPLEGL 194
>gi|145079746|tpg|DAA05928.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Mesostigma viride]
Length = 287
Score = 87.0 bits (214), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 73/194 (37%), Positives = 93/194 (47%), Gaps = 36/194 (18%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW------- 117
P +++G L GDYG+DPLGLG K YR E++HGRWAM VVG+ V +
Sbjct: 85 PAYMNGELAGDYGYDPLGLGNKGGVEK-YRPYEVLHGRWAMLGVVGMLVPEGLYANGNTN 143
Query: 118 -SGIPWFEAGA---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW 173
G W+++GA DP A ++ G L L E FF E+ + PW
Sbjct: 144 IKGAVWWDSGAVLLDPSATLTWA-GIPNPVPLALAVIFEVAV---FFLIENYRYQQDGPW 199
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
+ YPGGK+FDPL LA D K D LKV EIK+ RLAM+A
Sbjct: 200 GTGLDPL--------YPGGKYFDPLGLAS---------DPSKADELKVKEIKNGRLAMMA 242
Query: 234 MLIF---YFEAGQG 244
L F YF +G
Sbjct: 243 FLGFVVQYFVTKEG 256
>gi|118489712|gb|ABK96657.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 224
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 22 TPSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKV 81
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 82 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI------- 134
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D LKV
Sbjct: 135 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPTTFAELKV 170
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 171 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 201
>gi|125558806|gb|EAZ04342.1| hypothetical protein OsI_26482 [Oryza sativa Indica Group]
Length = 266
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 71/209 (33%), Positives = 90/209 (43%), Gaps = 50/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 64 TPSYLRGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 123
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 124 DFKEPVWFKAGAQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRINGL---- 179
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
G YPGG++FDPL LA D LKV E
Sbjct: 180 ----------------PGVGDGNDLYPGGQYFDPLGLAD---------DPVTFAELKVKE 214
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM +M F+ +A GK PL L
Sbjct: 215 IKNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|159471942|ref|XP_001694115.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|12658406|gb|AAK01125.1|AF330793_1 light-harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
gi|158277282|gb|EDP03051.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 249
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + A +GIP
Sbjct: 49 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 108
Query: 122 -----WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 109 FGEAVWFKAGAQIFAEGGLNY---LGNENLI---------------HAQSIIATLAFQVV 150
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 151 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 210
Query: 237 FYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 211 FFVQAIVTGKGPIQNL 226
>gi|359495476|ref|XP_002274150.2| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
gi|147801944|emb|CAN77327.1| hypothetical protein VITISV_001096 [Vitis vinifera]
Length = 269
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 90/211 (42%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V + W +
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 126
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 127 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI------- 179
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG +FDPL LA D LKV
Sbjct: 180 ---------------NGLPGVGEGNDLYPGGPYFDPLGLAD---------DPVTFAELKV 215
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 216 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 246
>gi|87313215|gb|ABD37904.1| light-harvesting chlorophyll-a/b binding protein Lhca2
[Chlamydomonas incerta]
Length = 254
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 91/191 (47%), Gaps = 39/191 (20%)
Query: 67 WLDGSLPGDYGFDPLGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDG+LPGD+GFDPLGL DP F+ KW + +E+IH RWAM G +
Sbjct: 43 YLDGTLPGDFGFDPLGL-LDPVNSGGFIEPKWLQYSEVIHARWAMLGAAGCIAPEVLGAA 101
Query: 118 ------SGIPWFEAGADPGA-------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ I WFE+G P A P+ ++ +++ M + E +R DF P S
Sbjct: 102 GLIPDATNIKWFESGVIPPAGSYDGYWADPY---TIFFVEIVAMQFAELRRLQDFRYPGS 158
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
++ E +G+ YPGG FF+ L T + LK+ EI
Sbjct: 159 MGQQYFL----GLEAIFKGSGDAAYPGGPFFNLFNLGKT---------EAAMKELKLKEI 205
Query: 225 KHARLAMVAML 235
K+ RLAM+AML
Sbjct: 206 KNGRLAMLAML 216
>gi|145079288|tpg|DAA05908.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm10 [Acetabularia acetabulum]
Length = 224
Score = 86.7 bits (213), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/242 (33%), Positives = 110/242 (45%), Gaps = 57/242 (23%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI----PAVKGGGNLINPEWLDGSLPGDYGFD 79
SQA+ T +VTS +++ ++ P W P G + P +L G PGDYG+D
Sbjct: 12 SQAVT--TKKVTSMRRTQKKSS-APDSVWYGPERPQFLGPFSGDCPSYLTGEFPGDYGWD 68
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA---D 128
GL DP + YRE ELIH RWAM +G + G ++ WF+AG+
Sbjct: 69 TAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILAKYGGVSFGESVWFKAGSQIFQ 128
Query: 129 PGAIAPFSFGSL---------LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
G + SL LG Q+LLMG +E+ R P + ++ P
Sbjct: 129 EGGLDYLGNSSLVHAQYILAILGCQVLLMGAIEAYRVNG--GPLGEGLD---PL------ 177
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG+ FDPL LA PDT LKV EIK+ RLAM +M FY
Sbjct: 178 ---------YPGGQ-FDPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFYV 218
Query: 240 EA 241
+A
Sbjct: 219 QA 220
>gi|359495474|ref|XP_003634999.1| PREDICTED: chlorophyll a-b binding protein 13, chloroplastic-like
[Vitis vinifera]
Length = 269
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/211 (34%), Positives = 90/211 (42%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PGDYG+D GL DP R E+IHGRWAM G V + W +
Sbjct: 67 TPSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGAFGCITPEVLEKWVKV 126
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 127 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGYRI------- 179
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG +FDPL LA D LKV
Sbjct: 180 ---------------NGLPGVGEGNDLYPGGPYFDPLGLAD---------DPVTFAELKV 215
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 216 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 246
>gi|302851012|ref|XP_002957031.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
gi|300257587|gb|EFJ41833.1| light-harvesting chlorophyll-a/b protein of photosystem I [Volvox
carteri f. nagariensis]
Length = 270
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 108/237 (45%), Gaps = 42/237 (17%)
Query: 21 GKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDP 80
GK ++ A R+ + +A + K + G + + +LDG+LPGD+GFDP
Sbjct: 14 GKAARPAQANRARLVCRAEEKSIATVDRSKDQLYV---GASQSSLAYLDGTLPGDFGFDP 70
Query: 81 LGLGKDPA----FL--KWYREAELIHGRWAMAAVVGIFVGQAW---------SGIPWFEA 125
LGL DP F+ KW + +E+IHGRWAM G + + I W+E+
Sbjct: 71 LGL-LDPVNSGGFVEPKWLQYSEVIHGRWAMLGAAGCIAPEILGAAGLIPEKTNIVWYES 129
Query: 126 GADPGA-------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
G P A P+ ++ +++ M + E +R DF P S ++ E
Sbjct: 130 GVIPPAGSYDGYWADPY---TIFFIEIVAMQFAELRRLQDFRYPGSMGKQYFL----GLE 182
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+G+ YPGG FF+ L T + LK+ EIK+ RLAM+AML
Sbjct: 183 KIFAGSGDPAYPGGPFFNLFNLGKT---------EAAMKELKLKEIKNGRLAMLAML 230
>gi|225580693|gb|ACN94454.1| photosystem I light-harvesting cholrophyll-a/b protein 3
[Dunaliella salina]
Length = 286
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/258 (29%), Positives = 111/258 (43%), Gaps = 62/258 (24%)
Query: 23 KSQALLAGTNRVTSS-KKSVVVAALPPKKSWIPAVKG-----------------GGNLIN 64
K+QAL T + S ++ VVV A ++ PA + G +
Sbjct: 7 KTQALQGLTTKAPKSLRRQVVVRAEGEQQPPAPAAEAKQTSVAKVDRSKDVLYVGSDAAA 66
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFL-----------KWYREAELIHGRWAMAAVVGIFV 113
++LDG+LPGDYGFDPLGL DP +W + +E+IH RWAM G
Sbjct: 67 LKYLDGTLPGDYGFDPLGL-LDPTVSNGQGAGGFVNPRWLQYSEVIHARWAMLGAAGCIA 125
Query: 114 GQ---------AWSGIPWFEAGADPGA-------IAPFSFGSLLGTQLLLMGWVESKRWV 157
+ A + + WF G P A PF +L +++ + + E KR
Sbjct: 126 PEILGKAGVIPAETAVDWFRTGVIPPAGVYKDFWADPF---TLFFIEVVAIQFAELKRLQ 182
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
D+ NP SQS ++ E + YPGG FF+ T ++
Sbjct: 183 DYKNPGSQSRQYFL----GLEGLFKGSDNPAYPGGPFFNFANFGKT---------EAEMK 229
Query: 218 RLKVAEIKHARLAMVAML 235
+LK+ EIK+ RLAM+AM
Sbjct: 230 KLKLNEIKNGRLAMLAMF 247
>gi|255585090|ref|XP_002533251.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223526931|gb|EEF29136.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 244
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 90/183 (49%), Gaps = 44/183 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCRWAMLAVPGILVPEALGLGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAAIPGGQATYLGQPVPWGTLPTILVIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D K KV EIK+ RLA++
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPAKFHEYKVKEIKNGRLALL 200
Query: 233 AML 235
A +
Sbjct: 201 AFV 203
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA Y+ E+ +GR A+ A VGI V Q+
Sbjct: 172 FDPLGYSKDPAKFHEYKVKEIKNGRLALLAFVGICVQQS 210
>gi|302143082|emb|CBI20377.3| unnamed protein product [Vitis vinifera]
Length = 231
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWLRVD 89
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 90 FKEPIWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 142
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P N YPGG++FDPL LA D LKV EI
Sbjct: 143 -----GLPGVGDGNNL--------YPGGQYFDPLGLAD---------DPVTFAELKVKEI 180
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 181 KNGRLAMFSMFGFFVQAIVTGKGPLENL 208
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 9/61 (14%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PG FDPLGL DP + E+ +GR AM ++ G F
Sbjct: 144 LPGVGDGNNLY---------PGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 194
Query: 113 V 113
V
Sbjct: 195 V 195
>gi|424512849|emb|CCO66433.1| predicted protein [Bathycoccus prasinos]
Length = 286
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 92/199 (46%), Gaps = 47/199 (23%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDP----AFLK--WYREAELIHGRWAMAAVVGIFVGQAWSG 119
+LDG+LPGDYGFDPLGL DP F+ W AE+IHGRWAM V G + G
Sbjct: 76 SYLDGTLPGDYGFDPLGL-SDPEGAGGFINPGWLAYAEVIHGRWAMLGVAGATAPETMKG 134
Query: 120 -IP------WFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
IP WF+ G P A + F +L + +M +VE R E
Sbjct: 135 FIPDSTAVVWFKNGIIP-AQGSYDFWAPPTALFWVMVCMMNFVEINRL----------TE 183
Query: 169 WATPWSRTAENFA------NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+A P RT ++ A TG YPGG F+P+ + +D +KV
Sbjct: 184 YANPGFRTKQSLAGLEKGMGGTGNPAYPGGS-FNPMGMG-----------KNDMDAMKVK 231
Query: 223 EIKHARLAMVAMLIFYFEA 241
EIK+ RLAM+A +A
Sbjct: 232 EIKNGRLAMMAFFGIMVQA 250
>gi|125620170|gb|ABN46977.1| chlorophyll a/b-binding protein [Nelumbo nucifera]
Length = 269
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 73/208 (35%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL +P RE E+IH RWAM VG V + +G+
Sbjct: 68 TPSYLTGEFPGDYGWDSAGLSAEPETFAKNRELEVIHARWAMLGTVGCIVPELLERNGVK 127
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ DP I + ++L Q++LMG +E R
Sbjct: 128 IGEAVWFKAGSQIFRDEGLNYLGDPKLIHAQNILAVLAAQVILMGAIEGYRIS------- 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E+ LKV EI
Sbjct: 181 -----GGPLGEPTDPL--------YPGGN-FDPLHLAD---------DPEEFAILKVKEI 217
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM AML FY +A GK PL L
Sbjct: 218 KNGRLAMFAMLGFYVQAIVTGKGPLENL 245
>gi|308809197|ref|XP_003081908.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
gi|63029305|gb|AAY27551.1| chloroplast Lhcq-like protein precursor [Ostreococcus tauri]
gi|116060375|emb|CAL55711.1| putative chlorophyll a/b-binding protein (ISS) [Ostreococcus tauri]
Length = 242
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 87/194 (44%), Gaps = 46/194 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P LDG+L GD GFDPL L L+ YRE EL+HGRWAM VVG V G A
Sbjct: 48 PAHLDGTLCGDVGFDPLNLAAKSEDLERYRELELLHGRWAMLGVVGAAVPETLDRFGVAN 107
Query: 118 SGIP-WFEAGA---------DPGAIAPFSFGS------LLGTQLLLMGWVESKRWVDFFN 161
G P W++ GA D + F + QL+LMG E R+V +
Sbjct: 108 LGEPVWWKVGAAKMNSDIALDYLGFSGFHIAGGSGIAVIAACQLVLMGGPEYARYVGINS 167
Query: 162 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
E V G++ YPGG FDP + D E+ ++ KV
Sbjct: 168 LEPVGVYL--------------PGDKDYPGGAPFDPF---------KFSDDAEEFEKQKV 204
Query: 222 AEIKHARLAMVAML 235
EIKH RLAM+A L
Sbjct: 205 MEIKHCRLAMIAAL 218
>gi|87313175|gb|ABD37884.1| light-harvesting chlorophyll-a/b binding protein Lhca5.2
[Mesostigma viride]
gi|145079736|tpg|DAA05927.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca9 [Mesostigma viride]
Length = 225
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 94/214 (43%), Gaps = 48/214 (22%)
Query: 30 GTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF 89
G + T+++ V AA + W+P N + P L+G+LPGDYG+DP+GL DP
Sbjct: 22 GVKKATAARDVTVRAA--DRTLWLP------NTVPPAHLNGTLPGDYGYDPIGLATDPDR 73
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWS--GIPWFEAGADPGAIAPFSFGSLLGTQLLL 147
L W+ EAE +GRWAMA V GI A PWF GA+ +P L + ++
Sbjct: 74 LAWFVEAERTNGRWAMAGVAGILFTDALHIGSAPWFSIGAE--LESPIPLWGLATIEFVI 131
Query: 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDG 207
G++E KR W + TG+ G FDPL +
Sbjct: 132 FGFLEMKR--------------LEGWKK--------TGQNGLLNWFPFDPLGMNS----- 164
Query: 208 VYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ V E+K+ RLAM A F +A
Sbjct: 165 ---------KEMMVKEVKNGRLAMFAWCGFMVQA 189
>gi|380504948|gb|AFD62761.1| LHCB, partial [Citrus sinensis]
Length = 169
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 88/168 (52%), Gaps = 42/168 (25%)
Query: 90 LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG--------ADPGAIAPFSFGSLL 141
L+ +RE ELIHGRWAM +G +A +G+ W +AG + G PFS +L+
Sbjct: 27 LQRFRECELIHGRWAMLGTLGAIAVEALTGVAWQDAGKVELVEGSSYLGQPLPFSLTTLI 86
Query: 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201
+++++G++E +R N E V ++ YPGG +FDPL LA
Sbjct: 87 WIEVIVIGYIEYQR-----NAELDPV------------------KRLYPGG-YFDPLGLA 122
Query: 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPL 248
D KL+ L++AEIKHARLAMVA LIF +A GK P+
Sbjct: 123 S---------DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 161
Score = 38.1 bits (87), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
PG Y FDPLGL DP L+ + AE+ H R AM A + + A++G
Sbjct: 112 PGGY-FDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTG 157
>gi|157965829|gb|ABW06951.1| chloroplast light-harvesting complex I protein precursor [Euglena
gracilis]
Length = 556
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/237 (30%), Positives = 101/237 (42%), Gaps = 38/237 (16%)
Query: 16 SFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGD 75
+FIN G + T AA + WIP VK PE L+ +L GD
Sbjct: 141 AFINDGANITTAMFATAGKKVRPTPAPAAASTERLLWIPGVKA------PEHLNNTLVGD 194
Query: 76 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPF 135
GFDPL LGKDP L+ +R +E+ HGR AM A G V + G+ W++A P P
Sbjct: 195 RGFDPLNLGKDPNALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDAVKTPD---PI 251
Query: 136 SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFF 195
+ + L + G +E R+ F P E + YPG
Sbjct: 252 TLTTFLLALAVATGPIELWRYDGRF-----------PAWEEGEEPEPKVADIAYPGA--- 297
Query: 196 DPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
DP + + K+ E+K+ RLAM+A+L FYF+ A G +P+ L
Sbjct: 298 DPFEWSS--------------EEAKLKELKNGRLAMIAVLGFYFQHAKTGASPIENL 340
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 100/237 (42%), Gaps = 38/237 (16%)
Query: 16 SFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGD 75
+FIN G + T AA + WIP VK PE L+ +L GD
Sbjct: 342 AFINDGANITTAMFATAGKKVRPTPAPAAASTERLLWIPGVKA------PEHLNNTLVGD 395
Query: 76 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPF 135
GFDPL LGK+P L+ +R +E+ HGR AM A G V + G+ W++A P P
Sbjct: 396 RGFDPLNLGKNPNALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDAVKTPD---PI 452
Query: 136 SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFF 195
+ + L + G +E R+ F P E YPG
Sbjct: 453 TLTTFLLALAVATGPIELWRYDGRF-----------PAWEEGEEPEPKVANIAYPGA--- 498
Query: 196 DPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
DP + + K+ E+K+ RLAM+A+L FYF+ A G +P+ L
Sbjct: 499 DPFEWSS--------------EEAKLKELKNGRLAMIAVLGFYFQHAKTGASPIENL 541
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 32/170 (18%)
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLG 142
LGKDP L+ +R +E+ HGR AM A G V + G+ W++A P I +F +L
Sbjct: 1 LGKDPNALERFRVSEVFHGRLAMLAFAGALVPELLRGVAWYDAVHTPDPITLTTFLLVLA 60
Query: 143 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAG 202
G +E R+ F P E + YPG DP +
Sbjct: 61 GA---TGPIELWRYDGRF-----------PAWEEGEEPEPKVADIAYPGA---DPFEWSS 103
Query: 203 TIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-AGQGKTPLGAL 251
+ K+ E+K+ RLAM+A+L FYF+ A G +P+ L
Sbjct: 104 --------------EEAKLKELKNGRLAMIAVLGFYFQHAKTGASPIENL 139
>gi|169124051|gb|ACA47401.1| chloroplast chlorophyll-a/b binding protein [Medicago falcata]
Length = 266
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 125 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P N YPGG++FDPL LA D LKV EI
Sbjct: 178 -----GLPGVGEGNNL--------YPGGQYFDPLGLAD---------DPVTFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PG FDPLGL DP + E+ +GR AM ++ G F
Sbjct: 179 LPGVGEGNNL---------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 229
Query: 113 VGQAWSG 119
V +G
Sbjct: 230 VQAIVTG 236
>gi|159491492|ref|XP_001703699.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
gi|15430554|dbj|BAB64412.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|15430562|dbj|BAB64416.1| light-harvesting chlorophyll-a/b binding protein LhcII-1.3
[Chlamydomonas reinhardtii]
gi|158270548|gb|EDO96390.1| light-harvesting complex II chlorophyll a-b binding protein M3
[Chlamydomonas reinhardtii]
Length = 257
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 57 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQ 116
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG VE R P
Sbjct: 117 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNG--GPAG 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LKV EI
Sbjct: 175 EGLDPLYP-------------------GESFDPLGLADD-------PDT--FAELKVKEI 206
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 207 KNGRLAMFSMFGFFVQAIVTGKGPIQNL 234
>gi|412985627|emb|CCO19073.1| unknown [Bathycoccus prasinos]
Length = 291
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/195 (40%), Positives = 100/195 (51%), Gaps = 30/195 (15%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW--SGIPW 122
P +LDG L GDYGFDPLGLG D A +K YR AE+IH RWAM AV GI + +A +G W
Sbjct: 87 PSYLDGKLAGDYGFDPLGLGADGA-IKQYRVAEVIHARWAMLAVPGIVIPEALNIAGGDW 145
Query: 123 FEAGA-----DPGAIAPFS--FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPW-- 173
E G G P G + ++LMG E R +P S + P+
Sbjct: 146 RETGKVFLEGSTGRFGPAELWLGIAVAPLIVLMGGAEKFRS----DPASAPSGF-VPFKG 200
Query: 174 SRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
S T ++FA + PGG D +A T +D L+ LKV EIK+ RLAM+A
Sbjct: 201 SFTGKDFAKL--DPINPGGP-LDFYNVAATPQD---------LEILKVKEIKNGRLAMIA 248
Query: 234 ML-IFYFEAGQGKTP 247
ML +F A G+ P
Sbjct: 249 MLGVFVQGATTGEGP 263
>gi|302849997|ref|XP_002956527.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
gi|300258225|gb|EFJ42464.1| hypothetical protein VOLCADRAFT_107271 [Volvox carteri f.
nagariensis]
Length = 238
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 89/208 (42%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 54 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPKLLSKNGVQ 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+S WF+AGA + + + + L Q++LMG VE R P
Sbjct: 114 FSEALWFKAGAQIFQEGGLDYLGNLSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P GK FDPL LA PDT LKV EI
Sbjct: 172 EGLDPLYP-------------------GKSFDPLGLADD-------PDT--FAELKVKEI 203
Query: 225 KHARLAMVAMLIFYFEAGQGKTPLGALG 252
K+ RLAM +M F+ + G+G G G
Sbjct: 204 KNGRLAMFSMFGFFVQPGKGGHATGTHG 231
>gi|302796621|ref|XP_002980072.1| light-harvesting complex [Selaginella moellendorffii]
gi|302811558|ref|XP_002987468.1| light-harvesting complex [Selaginella moellendorffii]
gi|300144874|gb|EFJ11555.1| light-harvesting complex [Selaginella moellendorffii]
gi|300152299|gb|EFJ18942.1| light-harvesting complex [Selaginella moellendorffii]
Length = 271
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 91/194 (46%), Gaps = 50/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYGFDP GL K PA Y+ ELIH RWAM G + +A++
Sbjct: 78 PEYLTGEVPGDYGFDPFGLSKKPADFDKYQAYELIHARWAMLGAAGFVIPEAFNKFGAQC 137
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA GA P + + +++L+G E R ++
Sbjct: 138 GPEAVWFKTGALLLDGGTLNYFGANIPINLVLAVLAEVILVGGAEYYRSIN--------- 188
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
N ++ +PGG FDPL LA KD PD L LKV EIK+
Sbjct: 189 --------------NLGLDRLHPGGP-FDPLGLA---KD----PDNFAL--LKVKEIKNG 224
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML F+ +A
Sbjct: 225 RLAMFAMLGFFIQA 238
>gi|74272671|gb|ABA01131.1| chloroplast light-harvesting chlorophyll-a/b binding protein
[Chlamydomonas incerta]
Length = 257
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 57 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTQ 116
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG VE R P
Sbjct: 117 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAG 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LKV EI
Sbjct: 175 EGLDPLYP-------------------GESFDPLGLADD-------PDT--FAELKVKEI 206
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 207 KNGRLAMFSMFGFFVQAIVTGKGPVQNL 234
>gi|145079118|tpg|DAA05899.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm9 [Acetabularia acetabulum]
Length = 229
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 91/205 (44%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G +
Sbjct: 30 PSYLTGEFPGDYGWDTAGLSADPETFKAYREQELIHARWAMLGALGCVTPEILAKYAGVS 89
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG +E+ R P
Sbjct: 90 CGESVWFKAGSQIFQEGGLDYLGNPSLVHAQSILAILGCQVVLMGLIEAYRVNG--GPLG 147
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G FDPL LA D + LKV EI
Sbjct: 148 EGLDPLHP-------------------GDKFDPLGLAD---------DPDTFAELKVKEI 179
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M FY +A GK P+
Sbjct: 180 KNGRLAMFSMFGFYVQAIVTGKGPI 204
Score = 37.4 bits (85), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PGD FDPLGL DP + E+ +GR AM ++ G +V +G
Sbjct: 148 EGLDPLHPGD-KFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFYVQAIVTGKGPIEN 206
Query: 122 WFEAGADPGAIAPFSFGS 139
W + ADP + +++ +
Sbjct: 207 WADHVADPFNVTAWNYAT 224
>gi|87313227|gb|ABD37910.1| light-harvesting chlorophyll-a/b binding protein LhcbM2a
[Chlamydomonas incerta]
Length = 246
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + A +GIP
Sbjct: 46 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 105
Query: 122 -----WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
WF+AG+ A ++ LG + L+ +QS+ +
Sbjct: 106 FGEAVWFKAGSQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQVV 147
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 148 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 207
Query: 237 FYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 208 FFVQAIVTGKGPIQNL 223
>gi|115813|sp|P27522.1|CB13_SOLLC RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCI type III CAB-8; Flags: Precursor
gi|19182|emb|CAA33330.1| Type III chlorophyll a/b-binding protein [Solanum lycopersicum]
Length = 273
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 46/243 (18%)
Query: 25 QALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLI-------NPEWLDGSLPGDYG 77
Q + + ++ + K S VV A + P VK G N + +LDG LPGD+G
Sbjct: 21 QIIGSRISQSVTRKASFVVRA-----ASTPPVKQGANRQLWFASKQSLSYLDGRLPGDFG 75
Query: 78 FDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPW 122
FDPLGL DP F+ KW E+I+GR+AM G +G+A + + W
Sbjct: 76 FDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLIPQETALAW 134
Query: 123 FEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
F+ G P A +++ +L ++ LMG+ E +R+ D+ P S ++ E
Sbjct: 135 FQTGVIPPA-GTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLE 189
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
+G+ YPGG F+PL D + + LK+ EIK+ RLAM+A+L ++
Sbjct: 190 KGLGGSGDPAYPGGPLFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAILGYF 240
Query: 239 FEA 241
+A
Sbjct: 241 IQA 243
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+
Sbjct: 197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGV 248
>gi|405617|emb|CAA43804.1| LHCII Type III chlorophyll a/b binding protein [Brassica napus]
Length = 221
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/211 (34%), Positives = 92/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G PG+YG+D GL DP R E+IHGRWAM G V Q W +
Sbjct: 19 TPSYLTGEFPGEYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGAFGCITPEVLQKWVRV 78
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 79 DFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGLRI------- 131
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N + GE YPGG++FDPL LA D LKV
Sbjct: 132 ---------------NGLDGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELKV 167
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 168 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 198
>gi|357452427|ref|XP_003596490.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355485538|gb|AES66741.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 264
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q++LMG VE R
Sbjct: 123 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN------- 175
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P N YPGG++FDPL LA D LKV EI
Sbjct: 176 -----GLPGVGEGNNL--------YPGGQYFDPLGLAD---------DPVTFAELKVKEI 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENL 241
Score = 37.4 bits (85), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PG FDPLGL DP + E+ +GR AM ++ G F
Sbjct: 177 LPGVGEGNNL---------YPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFF 227
Query: 113 VGQAWSG 119
V +G
Sbjct: 228 VQAIVTG 234
>gi|116783276|gb|ABK22868.1| unknown [Picea sitchensis]
Length = 233
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 79/177 (44%), Gaps = 56/177 (31%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P WLDGSLP D+GFDPLGLG DP LKW ++EL+H RWAM GIF+ + + +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
DP F L GT +
Sbjct: 143 --TDP----IFPNNKLTGTDV--------------------------------------- 157
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
GYPGG +FDPL G EK+ L+ EIK+ RLAM++++ +F+A
Sbjct: 158 ---GYPGGLWFDPL--------GWGSGSPEKIKELRTKEIKNGRLAMLSVMGAWFQA 203
>gi|207853262|gb|ACI25416.1| chloroplast chlorophyll a-b binding protein 4 [Semiliquidambar
cathayensis]
Length = 138
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%), Gaps = 16/140 (11%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + + I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVLTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
G A S +L + +L +VE +RW D NP + + + ++ A
Sbjct: 61 GK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLAPH 111
Query: 186 EQGYPGGKFFDPLCLAGTIK 205
E GYPGG +PL A T++
Sbjct: 112 ECGYPGG-ISNPLNFAPTLE 130
>gi|384252962|gb|EIE26437.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 245
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 91/208 (43%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP YRE E+IH RWAM +G G +
Sbjct: 46 SPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVS 105
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + S + L Q++LMG E+ R N E
Sbjct: 106 FGEAVWFKAGAQIFGSDGLNYLGNPSLVHAQSIIATLACQVILMGGAEAYRA----NGEG 161
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
VE + YPGG FDPL LA D + LK EI
Sbjct: 162 PGVEGL---------------DSLYPGGP-FDPLGLAD---------DPDTFAELKTKEI 196
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 197 KNGRLAMFSMFGFFVQAIVTGKGPIENL 224
>gi|145079190|tpg|DAA05903.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm11 [Acetabularia acetabulum]
Length = 224
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 90/197 (45%), Gaps = 50/197 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP + YRE ELIH RWAM +G + G +
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ + + S ++LG Q+LLMG +E+ R P
Sbjct: 114 FGESVWFKAGSQIFQEGGLDYLGNSNLVHAQSILAILGCQVLLMGAIEAYRVNG--GPLG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPG K FDPL LA PDT LK+ EI
Sbjct: 172 EGLDPL------------------YPGDK-FDPLGLADD-------PDT--FAELKIKEI 203
Query: 225 KHARLAMVAMLIFYFEA 241
K+ RLAM +M FY +A
Sbjct: 204 KNGRLAMFSMFGFYVQA 220
>gi|388520661|gb|AFK48392.1| unknown [Lotus japonicus]
Length = 270
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP 121
P +L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVRVD 128
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++LG Q+LLMG VE R
Sbjct: 129 FKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRIN------- 181
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P N YPG ++FDPL LA D LKV EI
Sbjct: 182 -----GLPGVGEGNNL--------YPGDQYFDPLGLAD---------DPATFAELKVKEI 219
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 220 KNGRLAMFSMFGFFVQAIVTGKGPLENL 247
Score = 42.4 bits (98), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PGD FDPLGL DPA + E+ +GR AM ++ G F
Sbjct: 183 LPGVGEGNNL---------YPGDQYFDPLGLADDPATFAELKVKEIKNGRLAMFSMFGFF 233
Query: 113 V 113
V
Sbjct: 234 V 234
>gi|207853206|gb|ACI25388.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853210|gb|ACI25390.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853212|gb|ACI25391.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853214|gb|ACI25392.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
gi|207853216|gb|ACI25393.1| chloroplast chlorophyll a-b binding protein 4 [Liquidambar
styraciflua]
Length = 138
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 78/141 (55%), Gaps = 18/141 (12%)
Query: 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEA 125
LPGD GFDPLGL +DP L+WY +AEL++GRWAM VVG+ + + ++ I W++A
Sbjct: 1 LPGDNGFDPLGLAEDPENLRWYVQAELVNGRWAMLGVVGMLLPEVFTSIGIINVPKWYDA 60
Query: 126 GADPGAIAPF-SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
G + F S +L + +L +VE +RW D NP + + + ++
Sbjct: 61 ----GKVEYFASSTTLFVIEFILFHYVEIRRWQDIKNPGCVNQD------PIFKQYSLPP 110
Query: 185 GEQGYPGGKFFDPLCLAGTIK 205
E GYPG F+PL A T++
Sbjct: 111 HECGYPGS-IFNPLNFAPTLE 130
>gi|90191871|gb|ABD91647.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
gi|90191875|gb|ABD91649.1| major light-harvesting chlorophyll a/b protein 2.2 [Dunaliella
salina]
Length = 253
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 94/209 (44%), Gaps = 49/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS----- 118
PE+L G PGDYG+D GL DP YRE ELIH RWA+ +GI + S
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 --GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G P WF+AGA + I S + L Q++LMG E+ R
Sbjct: 110 QFGEPVWFKAGAQIFAAGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-------- 161
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ +E F + + YPGG FDPL LA D + LKV E
Sbjct: 162 ---------ANGGSEGFLDDL-DTLYPGGP-FDPLGLAD---------DPDTFAELKVKE 201
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM + L F+ +A GK P+ L
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
>gi|115829|sp|P27517.1|CB2_DUNTE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167985|gb|AAA62772.1| 28.5 kDa LHCII apoprotein [Dunaliella tertiolecta]
Length = 253
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/209 (35%), Positives = 95/209 (45%), Gaps = 49/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS----- 118
PE+L G PGDYG+D GL DP YRE ELIH RWA+ +GI + S
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 --GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G P WF+AGA + I S + L Q++LMG E+ R
Sbjct: 110 QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-------- 161
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ +E F + + YPGG FDPL LA PDT LKV E
Sbjct: 162 ---------ANGGSEGFLDDL-DTLYPGGP-FDPLGLADD-------PDT--FAELKVKE 201
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM + L F+ +A GK P+ L
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
>gi|90191869|gb|ABD91646.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
gi|90191873|gb|ABD91648.1| major light-harvesting chlorophyll a/b protein 2.1 [Dunaliella
salina]
Length = 253
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/209 (34%), Positives = 94/209 (44%), Gaps = 49/209 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS----- 118
PE+L G PGDYG+D GL DP YRE ELIH RWA+ +GI + S
Sbjct: 50 TPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGV 109
Query: 119 --GIP-WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
G P WF+AGA + I S + L Q++LMG E+ R
Sbjct: 110 QFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR-------- 161
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ +E F + + YPGG FDPL LA D + LKV E
Sbjct: 162 ---------ANGGSEGFLDDL-DTLYPGGP-FDPLGLAD---------DPDTFAELKVKE 201
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM + L F+ +A GK P+ L
Sbjct: 202 IKNGRLAMFSCLGFFVQAIVTGKGPVQNL 230
>gi|87313229|gb|ABD37911.1| light-harvesting chlorophyll-a/b binding protein LhcbM2b
[Chlamydomonas incerta]
Length = 229
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 88/196 (44%), Gaps = 26/196 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + A +GIP
Sbjct: 29 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKNGIP 88
Query: 122 -----WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
WF+AG+ A ++ LG + L+ +QS+ +
Sbjct: 89 FGEAVWFKAGSQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQVV 130
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 131 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 190
Query: 237 FYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 191 FFVQAIVTGKGPIQNL 206
>gi|19423285|gb|AAL88456.1|AF479777_1 major light-harvesting complex II protein m10 [Chlamydomonas
reinhardtii]
Length = 256
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G +
Sbjct: 57 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLAKSGTQF 116
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + + + L Q++LMG VE R P +
Sbjct: 117 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLVEGYRVNG--GPAGE 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA D + LKV EIK
Sbjct: 175 GLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEIK 206
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 207 NGRLAMFSMFGFFVQAIVTGKGPIQNL 233
>gi|358248178|ref|NP_001240088.1| uncharacterized protein LOC100786260 [Glycine max]
gi|255636882|gb|ACU18774.1| unknown [Glycine max]
Length = 331
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 90/210 (42%), Gaps = 46/210 (21%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P +L G LPGDYGFD GLG+DP L+ Y E++H RWAM A VG + + +
Sbjct: 122 PSYLTGELPGDYGFDIAGLGQDPVALQKYFNFEILHARWAMLASVGALIPEILDLLGAFH 181
Query: 121 ----PWFEAG--------ADPGAIAPFSFGSLLG------TQLLLMGWVESKRWVDFFNP 162
W+ G D I F G Q LLM E R+
Sbjct: 182 FVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYC----- 236
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+E P G+ YPGG FDPL L+ D E + LKV
Sbjct: 237 ---GIEALEPLG------IYLPGDINYPGGALFDPLNLSN---------DPEAFEELKVK 278
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 279 EIKNGRLAMVAWLGFYVQAALTGKGPVQNL 308
>gi|87313231|gb|ABD37913.1| light-harvesting chlorophyll-a/b binding protein LhcbM8
[Chlamydomonas incerta]
Length = 245
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 93/207 (44%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP + YRE ELIH RWAM +GI + A +G+P
Sbjct: 46 PAYLTGEFPGDYGWDTAGLSADPETFQRYRELELIHARWAMLGALGIVTPELLAKNGVPF 105
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I + + L Q++L+G VE R P +
Sbjct: 106 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVILLGLVEGYRVNG--GPAGE 163
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA D + LKV EIK
Sbjct: 164 GLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEIK 195
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM + F+ +A GK P+ L
Sbjct: 196 NGRLAMFSSFGFFVQAIVTGKGPIQNL 222
>gi|159474462|ref|XP_001695344.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
gi|158275827|gb|EDP01602.1| chloropyll a-b binding protein of LHCII [Chlamydomonas reinhardtii]
Length = 254
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 54 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTK 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG +E R P
Sbjct: 114 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYRVNG--GPAG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 172 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 203
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNL 231
>gi|224127848|ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
gi|118487642|gb|ABK95646.1| unknown [Populus trichocarpa]
gi|222870973|gb|EEF08104.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
Length = 290
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/181 (40%), Positives = 92/181 (50%), Gaps = 23/181 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L G +PGDYG+DP GL K P + Y+ ELIH RWAM G + +A++ F
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNK---FG 148
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G V E V A + T N
Sbjct: 149 ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRIT-----N 202
Query: 183 ATG--EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G ++ +PGG FDPL LA KD PD L LKV EIK+ RLAM AML F+F+
Sbjct: 203 GLGFDDKLHPGGP-FDPLGLA---KD----PDQAAL--LKVKEIKNGRLAMFAMLGFFFQ 252
Query: 241 A 241
A
Sbjct: 253 A 253
>gi|160713967|gb|ABX47019.1| chloroplast chlorophyll a/b binding protein cab-BO3-1 [Bambusa
oldhamii]
Length = 267
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 71/211 (33%), Positives = 91/211 (43%), Gaps = 54/211 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGI 120
P +L G GDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 65 TPSYLTGEFAGDYGWDTAGLSADPEAFARNRALEVIHGRWAMLGALGCITPEVLEKWVRV 124
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 125 DFKEPVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGYRI------- 177
Query: 164 SQSVEWATPWSRTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221
N GE YPGG++FDPL LA D L+V
Sbjct: 178 ---------------NGLPGVGEGNDLYPGGQYFDPLGLAD---------DPVTFAELRV 213
Query: 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ RLAM +M F+ +A GK PL L
Sbjct: 214 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|255087370|ref|XP_002505608.1| lycopene beta cyclase [Micromonas sp. RCC299]
gi|226520878|gb|ACO66866.1| lycopene beta cyclase [Micromonas sp. RCC299]
Length = 1447
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 103/217 (47%), Gaps = 28/217 (12%)
Query: 49 KKSWIPA--VKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
+K ++PA + G + P +L G +PGD G+DPL +G +K RE ELIHGRWAM
Sbjct: 1244 RKKFLPAALLNVTGQGVVPPYLTGEMPGDVGWDPLQMGAQRDIMK-LRERELIHGRWAML 1302
Query: 107 AVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGT-----QLLLMGWVESKRWVDFFN 161
A +G+ V ++ + + F PG + GT +L +G E+ W F+
Sbjct: 1303 AAIGVLVPESTARLSLF---GTPGQHWWNTHIEWTGTNSGIPELTYLG--ENIPWGVFWL 1357
Query: 162 PESQ-----SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
P E E F + ++ YPGGK FDPL + G + D E+L
Sbjct: 1358 PIIHLPLFFVAEMLRTGRLEVEAFKDL--DRLYPGGKLFDPLGIGGGVSD-------EEL 1408
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252
LK EI+H RLAM+A F EA G PL G
Sbjct: 1409 KILKTIEIQHCRLAMIASFGFIVEALAWGAGPLDVFG 1445
>gi|87313203|gb|ABD37898.1| light-harvesting chlorophyll-a/b binding protein LhcbM1
[Acutodesmus obliquus]
Length = 223
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 86/194 (44%), Gaps = 48/194 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G GDYG+D GL DP K YRE ELIH RWAM +G + A +G P
Sbjct: 58 TPAYLTGEFAGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCITPELLANNGTP 117
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA + + S L Q++LMG VE R P
Sbjct: 118 IAEPVWFKAGAQIFQDGGLNYLGNENLVHAQSIIVTLLVQVILMGTVEGYRVNG--GPAG 175
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FFDPL LA PDT LKV EI
Sbjct: 176 EGL------------------DKLYPGGDFFDPLGLADD-------PDT--FAELKVKEI 208
Query: 225 KHARLAMVAMLIFY 238
K+ RLAM +M F+
Sbjct: 209 KNGRLAMFSMFGFF 222
Score = 38.5 bits (88), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 26/48 (54%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 176 EGLDKLYPGGDFFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFV 223
>gi|62199619|gb|AAX76906.1| chloroplast Tidi [Dunaliella salina]
Length = 350
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 100/206 (48%), Gaps = 43/206 (20%)
Query: 67 WLDGSLPGDYGFDPLGLG--------KDPAFLKWYREAELIHGRWAMAAVVGIF----VG 114
+L GSLPGD+G+DPL L + ++W AE+IHGRWAM G +G
Sbjct: 128 YLTGSLPGDFGWDPLHLADTNDQDRLNNAMSMEWLSYAEVIHGRWAMLGAAGALSPEVLG 187
Query: 115 QA-----WSGIPWFEAG---ADPGAIA-------PFSF----GSLLGTQLLLMGWVESKR 155
+A +G+ WF+AG + IA PF + +LL T L+ MG+ E++R
Sbjct: 188 KAGVIPKETGLTWFQAGGLDSSSNLIAVPFTGPIPFQYWTDQYTLLFTMLVAMGFAETRR 247
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
W ++ P S ++ E + + YPGG FF+ L D ++
Sbjct: 248 WQEYKEPGSVQKQFFL----GLEKLTPPSQQPAYPGGGFFNFAGLGAK--------DEKQ 295
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
+ LKV EI++ RLAM+A L F +A
Sbjct: 296 MFELKVKEIRNGRLAMLAFLGFMVQA 321
>gi|307110008|gb|EFN58245.1| hypothetical protein CHLNCDRAFT_34387 [Chlorella variabilis]
Length = 336
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/206 (33%), Positives = 89/206 (43%), Gaps = 58/206 (28%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--------- 115
P+ L G LPGDYG+DP GLG+DPA L Y E EL+H RWAM +G V +
Sbjct: 140 PQHLSGELPGDYGWDPAGLGRDPAKLDRYVELELLHARWAMLGALGAVVPELLQLAGSAT 199
Query: 116 --------------------AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKR 155
A+ G+P G +A +F Q+LLM E R
Sbjct: 200 FLEDRWWNVGYAKLTTGEELAYLGVPGLRVAGGQG-VAIIAF-----CQVLLMFGPEYAR 253
Query: 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
E V G++ YPGG FDPL L+G D E+
Sbjct: 254 ACGISALEPLGV--------------FLPGDKNYPGGWLFDPLQLSG---------DAER 290
Query: 216 LDRLKVAEIKHARLAMVAMLIFYFEA 241
+ ++V EIK+ RLAMVA L F +A
Sbjct: 291 YEAMRVREIKNGRLAMVAWLGFAAQA 316
>gi|255074955|ref|XP_002501152.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
gi|226516415|gb|ACO62410.1| chlorophyll a/b-binding protein, psi-associated, chloroplast
precursor [Micromonas sp. RCC299]
Length = 293
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 36/191 (18%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW 117
N +LDG+LPGD+GFDPLG+ DP F+ +W +E+IHGRWAM V GI +
Sbjct: 78 NMAYLDGTLPGDFGFDPLGM-SDPEGAGGFVNPQWLAYSEVIHGRWAMLGVAGIVAPEIL 136
Query: 118 ---------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPES 164
+G+ WF +GA P F + ++ + +M + E KR D++ P S
Sbjct: 137 GGMGVIPESTGLVWFTSGAIP-PQGTFDYWANPMTIFWVNMCMMNFAEIKRGQDYWFPGS 195
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
Q+ W + N T YPGGK+F+P L + + ++ E+
Sbjct: 196 QAETPLLGWEKGFGGSGNPT----YPGGKWFNPFNLG-----------KDDMASMQKKEV 240
Query: 225 KHARLAMVAML 235
K+ RLAM+A L
Sbjct: 241 KNGRLAMMAFL 251
>gi|159474708|ref|XP_001695467.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|158275950|gb|EDP01725.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 54 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTK 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG +E R P
Sbjct: 114 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYRVNG--GPAG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 172 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 203
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNL 231
>gi|302840684|ref|XP_002951894.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
gi|300262795|gb|EFJ46999.1| hypothetical protein VOLCADRAFT_81675 [Volvox carteri f.
nagariensis]
Length = 255
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 55 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQ 114
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG VE R P
Sbjct: 115 FGEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAG 172
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 173 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 204
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 205 KNGRLAMFSMFGFFVQAIVTGKGPIENL 232
>gi|159474480|ref|XP_001695353.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
gi|158275836|gb|EDP01611.1| chloropyll a-b binding protein of LHCII type I, chloroplast
precursor [Chlamydomonas reinhardtii]
Length = 253
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 53 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTK 112
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG +E R P
Sbjct: 113 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYRVNG--GPAG 170
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 171 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 202
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 203 KNGRLAMFSMFGFFVQAIVTGKGPVQNL 230
>gi|145079101|tpg|DAA05898.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm1 [Acetabularia acetabulum]
Length = 198
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 85/194 (43%), Gaps = 50/194 (25%)
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQAWSG 119
L G PGDYG+D GL DP K YRE ELIH RWAM +G + G ++
Sbjct: 1 LTGEFPGDYGWDTAGLSADPETFKKYRETELIHARWAMLGALGCVTPEILARYGGTSFGE 60
Query: 120 IPWFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF AGA P I S G+++ +Q++LMG +E R P + +
Sbjct: 61 SVWFRAGAQIFKDGGLDYLGSPALIHAQSIGAIVISQVILMGLIEGYRVNG--GPAGEGL 118
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
+ P G+ FDPL LA D + LK+ EIK+
Sbjct: 119 DPLYP-------------------GESFDPLGLA---------DDPDTFAELKIKEIKNG 150
Query: 228 RLAMVAMLIFYFEA 241
RLAM +M FY +A
Sbjct: 151 RLAMFSMFGFYVQA 164
>gi|145355794|ref|XP_001422134.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
gi|144582374|gb|ABP00451.1| photosystem I light harvesting complex, chlorophyll a/b binding
[Ostreococcus lucimarinus CCE9901]
Length = 281
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 93/191 (48%), Gaps = 41/191 (21%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW-- 117
+LDGSLPGDYGFDPLGL DP F+ +W +E+IHGRWAM V G+ +
Sbjct: 69 SYLDGSLPGDYGFDPLGL-SDPEGAGGFINPQWLAYSEVIHGRWAMLGVAGMVAPEVLGG 127
Query: 118 -------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+G+ W++AG P PF ++ LM + E +R D++NP S
Sbjct: 128 LGIIPQETGLVWYKAGMIPAQGTYDYWANPF---TIFWINAALMNFAELRRAQDYWNPGS 184
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ W E +GE YPGG FF+ + G K + +++V EI
Sbjct: 185 MGKQELIGW----EKMLGGSGEPAYPGG-FFN---IMGQGK--------SDMAKMRVKEI 228
Query: 225 KHARLAMVAML 235
K+ RLAM+A
Sbjct: 229 KNGRLAMMACF 239
>gi|302849646|ref|XP_002956352.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
gi|300258258|gb|EFJ42496.1| hypothetical protein VOLCADRAFT_77072 [Volvox carteri f.
nagariensis]
Length = 250
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 86/196 (43%), Gaps = 27/196 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G +
Sbjct: 50 PSYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGVS 109
Query: 117 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
+ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 110 FGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQVV 151
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 152 VMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMFG 211
Query: 237 FYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 212 FFVQAIVTGKGPIENL 227
>gi|302832904|ref|XP_002948016.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
gi|300266818|gb|EFJ51004.1| hypothetical protein VOLCADRAFT_79865 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + + + L Q++LMG VE R P +
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGE 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA D + LKV EIK
Sbjct: 173 GLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEIK 204
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 205 NGRLAMFSMFGFFVQAIVTGKGPIENL 231
>gi|116779208|gb|ABK21181.1| unknown [Picea sitchensis]
gi|116780325|gb|ABK21632.1| unknown [Picea sitchensis]
gi|116781512|gb|ABK22131.1| unknown [Picea sitchensis]
gi|116791342|gb|ABK25943.1| unknown [Picea sitchensis]
gi|116791754|gb|ABK26096.1| unknown [Picea sitchensis]
gi|148907198|gb|ABR16740.1| unknown [Picea sitchensis]
gi|224284432|gb|ACN39950.1| unknown [Picea sitchensis]
gi|224284582|gb|ACN40024.1| unknown [Picea sitchensis]
gi|224284686|gb|ACN40075.1| unknown [Picea sitchensis]
Length = 303
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G ++ P + + + +++L+G E R + + E
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFE---- 220
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 221 ------------------DKLHPGGP-FDPLGLA---------KDPDQFALLKVKEIKNG 252
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 253 RLAMFSMLGFFVQA 266
>gi|302856312|ref|XP_002959561.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
gi|302856626|ref|XP_002959664.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254677|gb|EFJ39271.1| hypothetical protein VOLCADRAFT_108699 [Volvox carteri f.
nagariensis]
gi|300254888|gb|EFJ39374.1| hypothetical protein VOLCADRAFT_78398 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + + + L Q++LMG VE R P +
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGE 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA PDT LKV EIK
Sbjct: 173 GLDPLYP-------------------GESFDPLGLADD-------PDT--FAELKVKEIK 204
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 205 NGRLAMFSMFGFFVQAIVTGKGPIENL 231
>gi|302854172|ref|XP_002958596.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
gi|300256057|gb|EFJ40333.1| hypothetical protein VOLCADRAFT_84524 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLSKNGVQF 114
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + + + L Q++LMG VE R P +
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGE 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA PDT LKV EIK
Sbjct: 173 GLDPLYP-------------------GESFDPLGLADD-------PDT--FAELKVKEIK 204
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 205 NGRLAMFSMFGFFVQAIVTGKGPIENL 231
>gi|302835026|ref|XP_002949075.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
gi|300265820|gb|EFJ50010.1| hypothetical protein VOLCADRAFT_80470 [Volvox carteri f.
nagariensis]
Length = 252
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G
Sbjct: 51 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 110
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
++ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 111 SFGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQV 152
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 153 VVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 212
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 213 GFFVQAIVTGKGPIENL 229
>gi|302842165|ref|XP_002952626.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
gi|300261970|gb|EFJ46179.1| hypothetical protein VOLCADRAFT_81918 [Volvox carteri f.
nagariensis]
Length = 251
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
++ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 110 SFGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQV 151
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 152 VVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 212 GFFVQAIVTGKGPIENL 228
>gi|48375048|gb|AAT42191.1| chloroplast chlorophyll a-b binding protein [Nicotiana tabacum]
Length = 199
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 71/205 (34%), Positives = 89/205 (43%), Gaps = 50/205 (24%)
Query: 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP--- 121
L G PGDYG+D GL DP R E+IHGRWAM +G V + W +
Sbjct: 1 LTGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLEKWVKVDFKE 60
Query: 122 --WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+AGA +P + S ++LG Q++LMG VE R
Sbjct: 61 PVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRIN---------- 110
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
P N YPGG++FDPL LA D LKV EIK+
Sbjct: 111 --GLPGVGEGNNL--------YPGGQYFDPLGLA---------DDPTTFAELKVKEIKNG 151
Query: 228 RLAMVAMLIFYFEA-GQGKTPLGAL 251
RLAM +M F+ +A GK PL L
Sbjct: 152 RLAMFSMFGFFVQAIVTGKGPLENL 176
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 53 IPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF 112
+P V G NL PG FDPLGL DP + E+ +GR AM ++ G F
Sbjct: 112 LPGVGEGNNL---------YPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFF 162
Query: 113 VGQAWSG 119
V +G
Sbjct: 163 VQAIVTG 169
>gi|302842321|ref|XP_002952704.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
gi|300262048|gb|EFJ46257.1| light-harvesting chlorophyll a/b-binding protein [Volvox carteri f.
nagariensis]
Length = 251
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
++ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 110 SFGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQV 151
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 152 VVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 212 GFFVQAIVTGKGPIENL 228
>gi|302840162|ref|XP_002951637.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
gi|300263246|gb|EFJ47448.1| hypothetical protein VOLCADRAFT_109135 [Volvox carteri f.
nagariensis]
Length = 251
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G
Sbjct: 50 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 109
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
++ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 110 SFGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQV 151
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 152 VVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 211
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 212 GFFVQAIVTGKGPIENL 228
>gi|302851938|ref|XP_002957491.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
gi|300257133|gb|EFJ41385.1| hypothetical protein VOLCADRAFT_84135 [Volvox carteri f.
nagariensis]
Length = 254
Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKNGVQF 114
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + + + L Q++LMG VE R P +
Sbjct: 115 GEAVWFKAGAQIFQEGGLDYLGNPSLVHAQNIVATLACQVILMGLVEGYRVNG--GPAGE 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA D + LKV EIK
Sbjct: 173 GLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEIK 204
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 205 NGRLAMFSMFGFFVQAIVTGKGPIENL 231
>gi|145079233|tpg|DAA05905.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm12 [Acetabularia acetabulum]
Length = 255
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 67/205 (32%), Positives = 93/205 (45%), Gaps = 51/205 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP + YRE ELIH RWAM +G + G +
Sbjct: 54 PSYLTGEFPGDYGWDTAGLSADPETFRRYREQELIHARWAMLGALGCVTPEILSKYGGVS 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ + + S ++LG Q++LMG +E+ R P
Sbjct: 114 FGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNG--GPLG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPG K FDPL LA D + LK+ EI
Sbjct: 172 EGLDPL------------------YPGDK-FDPLGLAD---------DPDTFAELKIKEI 203
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M FY +A GK P+
Sbjct: 204 KNGRLAMFSMFGFYVQAVVTGKGPI 228
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PGD FDPLGL DP + E+ +GR AM ++ G +V +G
Sbjct: 172 EGLDPLYPGD-KFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFYVQAVVTGKGPIEN 230
Query: 122 WFEAGADPGAIAPFSFGS 139
W E A+P ++ +++ +
Sbjct: 231 WAEHVANPFSVNAWNYAT 248
>gi|87313235|gb|ABD37914.1| light-harvesting chlorophyll-a/b binding protein LhcbM9
[Chlamydomonas incerta]
Length = 254
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 54 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKNGTK 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG +E R P
Sbjct: 114 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLACQVILMGLIEGYRVNG--GPAG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV E+
Sbjct: 172 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEL 203
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 204 KNGRLAMFSMFGFFVQAIVTGKGPVQNL 231
>gi|145356594|ref|XP_001422513.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
gi|144582756|gb|ABP00830.1| putative CP26, photosystem II light harvesting complex
[Ostreococcus lucimarinus CCE9901]
Length = 324
Score = 83.6 bits (205), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 75/218 (34%), Positives = 105/218 (48%), Gaps = 34/218 (15%)
Query: 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLIN---PEWLDGSLPGDYGFDPLGLGKDPAFLK 91
T++K+++ P +K ++P GG L P +LDG+L GDYGFDPLGLG D A +K
Sbjct: 93 TAAKEALAKWYGPDRKLYLP----GGLLTKADLPSYLDGTLAGDYGFDPLGLGADGA-IK 147
Query: 92 WYREAELIHGRWAMAAVVGIFVGQAWSGIP---WFEAGA---DPGAIAPFSFGSLL---G 142
YR AE+IH RWAM A+ G+ + +A G+P W E G D PF + +
Sbjct: 148 QYRVAEVIHARWAMLAIPGVVIPEAL-GLPGGVWTETGKVFLDGETGRPFFLENPIVFAA 206
Query: 143 TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAG 202
Q+ LM VE F + P F E + G DP+ G
Sbjct: 207 VQVALMAGVEQ------FRSSGEGPAGFVP-------FKGKFDESAFKG---LDPINPGG 250
Query: 203 TIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ + + L LKV EIK+ RLAM+AML + +
Sbjct: 251 PLDFFNVASNPQDLALLKVKEIKNGRLAMIAMLGVFVQ 288
>gi|302849410|ref|XP_002956235.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
gi|300258538|gb|EFJ42774.1| hypothetical protein VOLCADRAFT_66679 [Volvox carteri f.
nagariensis]
Length = 276
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 89/208 (42%), Gaps = 45/208 (21%)
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AW 117
G L + L+G GD GFDPL LGKDP +RE EL+H RWAM VG V + A
Sbjct: 65 GPLGGAQHLNGEEAGDAGFDPLELGKDPGAFARFREVELLHARWAMLGFVGCMVPELLAL 124
Query: 118 SGIP-----WFEAGADP---------GAIAPFS------FGSLLGTQLLLMGWVESKRWV 157
G+ W++ GA G I F G + Q +LMG E R+V
Sbjct: 125 RGVELGEPVWWKVGASKLNSDLTLNWGGIEGFRIAGKQGIGLIAACQAVLMGGPEYARYV 184
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
+ E V G+Q YPGG FDPL Y D +
Sbjct: 185 GIRSLEPVGVFL--------------PGDQNYPGGGPFDPLN---------YAADADGFV 221
Query: 218 RLKVAEIKHARLAMVAMLIFYFEAGQGK 245
V EIK+ RLAMVAML + +A K
Sbjct: 222 DQAVREIKNGRLAMVAMLGLFVQAAVTK 249
>gi|224285677|gb|ACN40554.1| unknown [Picea sitchensis]
Length = 278
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 91/194 (46%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 80 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 139
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G ++ P + + + +++L+G E R + + E +
Sbjct: 140 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFEDKL- 198
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
+PGG FDPL LA D ++ LKV EIK+
Sbjct: 199 ---------------------HPGGP-FDPLGLA---------KDPDQFALLKVKEIKNG 227
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 228 RLAMFSMLGFFVQA 241
>gi|224285421|gb|ACN40433.1| unknown [Picea sitchensis]
Length = 303
Score = 83.2 bits (204), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIMPEAFNKFGAYC 164
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G ++ P + + + +++L+G E R + + E
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFE---- 220
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 221 ------------------DKLHPGGP-FDPLGLA---------KDPDQFALLKVKEIKNG 252
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 253 RLAMFSMLGFFVQA 266
>gi|242070573|ref|XP_002450563.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
gi|241936406|gb|EES09551.1| hypothetical protein SORBIDRAFT_05g007070 [Sorghum bicolor]
Length = 282
Score = 83.2 bits (204), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 88/194 (45%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A +
Sbjct: 84 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 143
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R ++ + E
Sbjct: 144 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLDLE---- 199
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 200 ------------------DKLHPGGP-FDPLGLAS---------DPDQAAILKVKEIKNG 231
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 232 RLAMFSMLAFFIQA 245
>gi|123316054|gb|ABM74386.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
gi|123316062|gb|ABM74387.1| major light-harvesting chlorophyll a/b protein 3 [Dunaliella
salina]
Length = 261
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 92/209 (44%), Gaps = 51/209 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D G DP YR E+IH RWA+ +GI + A +G+P
Sbjct: 59 PSYLTGEFPGDYGWDTAGFSADPTTFARYRTIEVIHARWALLGALGIVTPEILAQNGVPF 118
Query: 122 ------WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AG++ P I S + L Q+++MG E R N E
Sbjct: 119 SGDAAIWFKAGSEIFKEGGLNYLGNPNLIHAQSILATLAVQVIVMGAAEGFRA----NGE 174
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ VE + YPGG FDPL LA D + LKV E
Sbjct: 175 APGVEGL---------------DTLYPGGP-FDPLGLAD---------DPDTFAELKVKE 209
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM A F+ +A GK P+ L
Sbjct: 210 IKNGRLAMFACFGFFVQAIVTGKGPIQNL 238
>gi|157837283|gb|ABV82714.1| chloroplast chlorophyll a/b binding protein precursor
[Phyllostachys edulis]
Length = 246
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 96/201 (47%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGLG P + ++E+E+ H RWAM V G+ V +A W
Sbjct: 56 RPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWV 115
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + + E +R ++ +PE +
Sbjct: 116 KAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTME-KDPEKKK------ 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL G KD V KL+ K+ EIK+ RLAM+
Sbjct: 169 ----------------YPGGA-FDPL---GFSKDPV------KLEEYKLKEIKNGRLAML 202
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 203 AFVGFCVQQSAYPGTGPLENL 223
>gi|424513524|emb|CCO66146.1| light-harvesting protein of photosystem I [Bathycoccus prasinos]
Length = 212
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 83/172 (48%), Gaps = 40/172 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF- 123
P++LDGS+ GDYGFDPL LG + L + +EAEL++GRWAM A +G+ + +P F
Sbjct: 9 PDYLDGSMAGDYGFDPLRLGANKESLPYLQEAELMNGRWAMYATIGVLATDSNPSLPKFW 68
Query: 124 EAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
EAGA A F +L+ TQ+++MG +E+ R F
Sbjct: 69 EAGA---ADYDIDFKTLVVTQVIVMGILEALRIRGFMK---------------------- 103
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
TGE G FDP + +V E+K+ RLAMVA L
Sbjct: 104 TGESGLGANFPFDPAGMDSPAA--------------RVKEVKNGRLAMVAFL 141
>gi|18254|emb|CAA49209.1| a/b binding protein [Pyrobotrys stellata]
Length = 254
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 103/229 (44%), Gaps = 52/229 (22%)
Query: 33 RVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW 92
R T +KK+V + P P GG + P +L+G PGDYG+D GL DP K
Sbjct: 27 RRTQAKKAVPES--PFYGPNRPLFLGGLSGEPPAYLNGEFPGDYGWDTAGLSADPETFKR 84
Query: 93 YREAELIHGRWAMAAVVGIFVGQ--AWSGIP------WFEAGAD------------PGAI 132
YR+ ELIH RWA+ +G V + A +G+ WF+ GA+ +
Sbjct: 85 YRQLELIHARWALLGALGCVVPELLARNGVAMPADGVWFKVGAEIFKEGGLNYLGNENLV 144
Query: 133 APFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGG 192
S + L QL+LMGW E R P + ++ P YPGG
Sbjct: 145 HAQSIVATLLVQLVLMGWAEGYRING--GPLGEGLD---PL---------------YPGG 184
Query: 193 KFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
FDPL LA PDT L LKV E+K+ R+AM AM F +A
Sbjct: 185 A-FDPLGLADD-------PDT--LAELKVKELKNGRMAMAAMFGFLVQA 223
>gi|116783956|gb|ABK23158.1| unknown [Picea sitchensis]
Length = 303
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 105 PEYLNGEVPGDYGYDPFGLIKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G ++ P + + + +++L+G E R + + E
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRATNGLDFE---- 220
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 221 ------------------DKLHPGGP-FDPLGLA---------KDPDQFALLKVKEIKNG 252
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 253 RLAMFSMLGFFVQA 266
>gi|116785086|gb|ABK23587.1| unknown [Picea sitchensis]
Length = 303
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 92/194 (47%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 105 PEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYC 164
Query: 121 ----PWFEAGA---DPGAIAPF------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D G ++ F + + + +++L+G E R + + E
Sbjct: 165 GPEAVWFKTGALLLDGGTLSYFGASIHINLIAAVVAEVILVGGAEYYRATNGLDFE---- 220
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 221 ------------------DKLHPGGP-FDPLGLA---------KDPDQFALLKVKEIKNG 252
Query: 228 RLAMVAMLIFYFEA 241
RLAM +ML F+ +A
Sbjct: 253 RLAMFSMLGFFVQA 266
>gi|302842163|ref|XP_002952625.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
gi|300261969|gb|EFJ46178.1| hypothetical protein VOLCADRAFT_102070 [Volvox carteri f.
nagariensis]
Length = 270
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G + G
Sbjct: 69 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCVTPELLSKYAGV 128
Query: 116 AWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
++ WF+AGA A ++ LG + L+ +QS+ +
Sbjct: 129 SFGEAVWFKAGAQIFAEGGLNY---LGNENLV---------------HAQSIIATLAFQV 170
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A A G P G+ DPL G D + LKV EIK+ RLAM +M
Sbjct: 171 VVMGLAEAYRANGGPLGEGLDPLHPGGAFDPLGLADDPDTFAELKVKEIKNGRLAMFSMF 230
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 231 GFFVQAIVTGKGPIENL 247
>gi|224068679|ref|XP_002302798.1| predicted protein [Populus trichocarpa]
gi|222844524|gb|EEE82071.1| predicted protein [Populus trichocarpa]
Length = 266
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|384253398|gb|EIE26873.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 250
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 90/208 (43%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L+G PGDYG+D GL DP YRE E+IH RWAM +G G +
Sbjct: 51 TPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVS 110
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA + + S + L Q++LMG E+ R E
Sbjct: 111 FGEAVWFKAGAQIFGSDGLNYLGNSSLVHAQSIIATLACQVILMGGAEAYRAAG----EG 166
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+E + YPGG FDPL LA D + LKV EI
Sbjct: 167 PGLEGL---------------DSLYPGGP-FDPLGLA---------DDPDTFSELKVKEI 201
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 202 KNGRLAMFSMFGFFVQAIVTGKGPIENL 229
>gi|125555124|gb|EAZ00730.1| hypothetical protein OsI_22755 [Oryza sativa Indica Group]
Length = 241
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV G+ V +A W
Sbjct: 51 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWV 110
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A+PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 111 QAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------ 163
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL G KD V K + K+ EIK+ RLAM+
Sbjct: 164 ----------------YPGGA-FDPL---GFSKDPV------KFEEYKLKEIKNGRLAML 197
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 198 AFVAFCVQQSAYPGTGPLENL 218
>gi|307106008|gb|EFN54255.1| hypothetical protein CHLNCDRAFT_56227 [Chlorella variabilis]
Length = 248
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 85/197 (43%), Gaps = 50/197 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-------- 115
P +L G PGDYG+D GL DP YRE E+IH RWAM +G +
Sbjct: 45 TPSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQNNGVA 104
Query: 116 AWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
++ WF+AGA +P I S ++L TQL LMG +E R P
Sbjct: 105 SFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAVLLTQLTLMGLIEGYRVNG--GPA 162
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ ++ P G+ FDPL LA D + LKV E
Sbjct: 163 GEGLDALYP-------------------GEAFDPLGLAD---------DPDTFSELKVKE 194
Query: 224 IKHARLAMVAMLIFYFE 240
+K+ RLAMV+M F+ +
Sbjct: 195 LKNGRLAMVSMFGFFVQ 211
>gi|168046799|ref|XP_001775860.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672867|gb|EDQ59399.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 34/195 (17%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW-- 117
+LDG+LPGDYGFDPLGL DP F+ +W AE+I+GR+AM G +
Sbjct: 18 SYLDGTLPGDYGFDPLGL-MDPEGAGGFIDPQWLPYAEIINGRFAMLGAAGAIAPEILGR 76
Query: 118 -------SGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQS 166
+ IPWF++G P + +S+ +L +L LMG+ E +R D++ P S
Sbjct: 77 IGLIPQETAIPWFQSGVIP-PVGNYSYWADPYTLFVLELALMGFAEHRRAQDYYKPGSMG 135
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
++ E F +G YPGG F+ L + ++L LK+ EIK+
Sbjct: 136 KQYFL----GLEKFLGGSGNPAYPGGPIFNFLGFG---------KNEKELKELKLKEIKN 182
Query: 227 ARLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 183 GRLAMMAVLGYFIQA 197
>gi|162461210|ref|NP_001105698.1| light harvesting chlorophyll a/b binding protein5 precursor [Zea
mays]
gi|733454|gb|AAA64414.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|414591311|tpg|DAA41882.1| TPA: chlorophyll a/b-binding apoprotein CP26 Precursor [Zea mays]
Length = 283
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 89/194 (45%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A +
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D ++ P + + +++L+G E R ++ + E
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGNSIPINLVVAVIAEVVLVGGAEYYRIINGLDLE---- 200
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 201 ------------------DKLHPGGP-FDPLGLAS---------DPDQAAILKVKEIKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM +M F+ +A
Sbjct: 233 RLAMFSMFAFFIQA 246
>gi|159474706|ref|XP_001695466.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
gi|19423287|gb|AAL88457.1|AF479778_1 major light-harvesting complex II protein m9 [Chlamydomonas
reinhardtii]
gi|158275949|gb|EDP01724.1| chlorophyll a-b binding protein of LHCII [Chlamydomonas
reinhardtii]
Length = 254
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP K YRE ELIH RWAM +GI G +
Sbjct: 55 PAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGIVTPELLQKNGVQF 114
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I + + L Q++L+G VE R P +
Sbjct: 115 GEAVWFKAGAQIFQEGGLNYLGNPSLIHAQNIVATLAVQVVLLGLVEGYRVNG--GPAGE 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ P G+ FDPL LA PDT LKV EIK
Sbjct: 173 GLDPLYP-------------------GESFDPLGLADD-------PDT--FAELKVKEIK 204
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM + F+ +A GK P+ L
Sbjct: 205 NGRLAMFSSFGFFVQAIVTGKGPIQNL 231
>gi|255548299|ref|XP_002515206.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223545686|gb|EEF47190.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 267
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|87621681|gb|ABD38707.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 267
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ+LLMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVLLMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVIDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|412985267|emb|CCO20292.1| unknown [Bathycoccus prasinos]
Length = 277
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 92/229 (40%), Gaps = 86/229 (37%)
Query: 61 NLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW---------------------------- 92
N P WLDGS+PGD GFDP GL K +L++
Sbjct: 59 NAEAPAWLDGSMPGDRGFDPFGLSKPTEYLQFDLDRLDGSAAKNPSGNVIGKLKKTDNKP 118
Query: 93 ----------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPF- 135
+RE EL+H RWAM +VG+ G+A +G+ W +AG +
Sbjct: 119 TERTIVPFNEAFDINRFRECELLHSRWAMLGLVGVIFGEAGTGVAWQDAGKVELEQTQYL 178
Query: 136 ---------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+ +L ++LL+G +E + R+AE +
Sbjct: 179 GFNLWGEGSNLAALTAIEVLLVGTLE--------------------FYRSAELDQE---K 215
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ YPGG F DPL A + + RLK AE+KH RLAMVAM
Sbjct: 216 RCYPGGAF-DPLGFASKSPEETF--------RLKTAELKHGRLAMVAMF 255
>gi|158523323|gb|ABW70800.1| chloroplast light harvesting chlorophyll a/b binding protein
[Populus euphratica]
Length = 263
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +ML F+ +A GK PL L
Sbjct: 214 NGRLAMFSMLGFFVQAIVTGKGPLENL 240
>gi|87313209|gb|ABD37901.1| light-harvesting chlorophyll-a/b binding protein LhcbM4
[Acutodesmus obliquus]
Length = 255
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 89/203 (43%), Gaps = 52/203 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G GDYG+D GL DP + YRE ELIH RWAM +G + A +G+P
Sbjct: 55 TPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVP 114
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA + I S + L Q++LMG VE R P
Sbjct: 115 FGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLVEGYRVNG--GPAG 172
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 173 EGLDPLYP-------------------GEAFDPLGLA---------DDPDTFAELKVKEI 204
Query: 225 KHARLAMVAMLIFYFEA---GQG 244
K+ RLAM +M F+ +A GQG
Sbjct: 205 KNGRLAMFSMFGFFVQAIVTGQG 227
>gi|145079054|tpg|DAA05896.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm13 [Acetabularia acetabulum]
Length = 255
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 93/206 (45%), Gaps = 51/206 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQ 115
P +L G PGDYG+D GL DP + YRE ELIH RWAM +G + G
Sbjct: 53 TPSYLTGEFPGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCVTPEILSKYGGV 112
Query: 116 AWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
++ WF+AG+ + + S ++LG Q++LMG +E+ R P
Sbjct: 113 SFGESVWFKAGSQIFQEGGLDYLGNANLVHAQSILAILGCQVVLMGAIEAYRVNG--GPL 170
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ ++ YPG K FDPL LA D + LK+ E
Sbjct: 171 GEGLDPL------------------YPGDK-FDPLGLAD---------DPDTFAELKIKE 202
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPL 248
IK+ RLAM +M F+ +A GK P+
Sbjct: 203 IKNGRLAMFSMFGFFVQAVVTGKGPI 228
Score = 41.2 bits (95), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PGD FDPLGL DP + E+ +GR AM ++ G FV +G
Sbjct: 172 EGLDPLYPGD-KFDPLGLADDPDTFAELKIKEIKNGRLAMFSMFGFFVQAVVTGKGPIEN 230
Query: 122 WFEAGADPGAIAPFSFGS 139
W E ADP ++ +++ +
Sbjct: 231 WAEHVADPFSVNAWNYAT 248
>gi|261351266|gb|ACX71300.1| chloroplast pigment-binding protein CP26 [Capsicum annuum]
Length = 287
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 94/200 (47%), Gaps = 52/200 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 89 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 148
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R ++ + E
Sbjct: 149 GPEAVWFKTGALLLDGNTLYYFGKNIPINLVLAVIAEVVLVGGAEYYRIINGLDLE---- 204
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA KD PD + LKV EIK+
Sbjct: 205 ------------------DKLHPGGP-FDPLGLA---KD----PDQAAI--LKVKEIKNG 236
Query: 228 RLAMVAMLIFYFEA---GQG 244
RLAM +ML F+ +A GQG
Sbjct: 237 RLAMFSMLGFFIQAYVTGQG 256
>gi|307106007|gb|EFN54254.1| hypothetical protein CHLNCDRAFT_59709 [Chlorella variabilis]
Length = 243
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/209 (33%), Positives = 91/209 (43%), Gaps = 51/209 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-------- 115
P +L G PGDYG+D GL DP YRE E+IH RWAM +G +
Sbjct: 44 TPSYLKGEYPGDYGWDTAGLSADPETFSRYRELEVIHARWAMLGALGCVTPELLQKNGAA 103
Query: 116 AWSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
+ WF+AGA + + S ++L TQ++LMG +E
Sbjct: 104 NFGEAVWFKAGAQIFQDGGLDYLGNANLVHAQSIVAVLLTQIVLMGLIEGY--------- 154
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
R A + YP G+ FDPL LA PDT L LKV E
Sbjct: 155 -----------RVNGGPAGEITDPIYP-GEAFDPLGLADD-------PDT--LAELKVKE 193
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAMV+M F+ +A GK P+ L
Sbjct: 194 IKNGRLAMVSMFGFFIQAIVTGKGPIENL 222
>gi|7271945|gb|AAF44702.1|AF241524_1 chlorophyll a/b-binding protein type I [Asarina barclaiana]
Length = 169
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 94/191 (49%), Gaps = 46/191 (24%)
Query: 74 GDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GADPG 130
GD+GFDPLGLG+ P L+ Y+E+ELIH RWAM AV GI V +A W +A A PG
Sbjct: 1 GDFGFDPLGLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGFGNWVKAQEWAAVPG 60
Query: 131 AIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A + + ++L + L + +VE +R ++ +PE +
Sbjct: 61 GQATYLGNPVPWGTLPTILVIEFLAIAFVEHQRSME-KDPEKRK---------------- 103
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE-- 240
YPGG FDPL Y D +K + LKV EIK+ RLA++A + F +
Sbjct: 104 ------YPGGA-FDPLG---------YSKDPKKFEELKVKEIKNGRLALLAFVGFCVQQS 147
Query: 241 AGQGKTPLGAL 251
A G PL L
Sbjct: 148 AYPGTGPLENL 158
>gi|73665920|gb|AAZ79657.1| putative chlorophyll a/b-binding protein [Fagus sylvatica]
Length = 260
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ+LLMG VE R
Sbjct: 122 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVLLMGAVEGYRIA-------- 173
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 174 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 211
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKGPIENL 238
>gi|225446831|ref|XP_002283566.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147799091|emb|CAN74831.1| hypothetical protein VITISV_023674 [Vitis vinifera]
Length = 270
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 130
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ++LMG VE R
Sbjct: 131 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVILMGAVEGYRIA-------- 182
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 183 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 220
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 221 NGRLAMFSMFGFFVQAIVTGKGPLENL 247
>gi|118489770|gb|ABK96685.1| unknown [Populus trichocarpa x Populus deltoides]
Length = 302
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/181 (40%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L G +PGDYG+DP GL K P + Y+ ELIH RWAM G + +A++ F
Sbjct: 92 PEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAAGFIIPEAFNK---FG 148
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G V E V A + T N
Sbjct: 149 ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAEYFRIT-----N 202
Query: 183 ATG--EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G ++ +PGG FDPL LA KD PD L LKV EIK+ RLAM AML F+ +
Sbjct: 203 GLGFDDKLHPGGP-FDPLGLA---KD----PDQAAL--LKVKEIKNGRLAMFAMLGFFLQ 252
Query: 241 A 241
A
Sbjct: 253 A 253
Score = 39.3 bits (90), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG-IPW 122
FDPLGL KDP + E+ +GR AM A++G F+ +G +PW
Sbjct: 216 FDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFLQAYVTGDVPW 261
>gi|384249593|gb|EIE23074.1| putative chlorophyll a/b-binding protein, chloroplast precursor
[Coccomyxa subellipsoidea C-169]
Length = 210
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 89/212 (41%), Gaps = 57/212 (26%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L+G PGDYG+D GL DP YRE E+IH RWAM +G G
Sbjct: 11 TPSYLNGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLSQNGFT 70
Query: 117 WSGIPWFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ W++AGA P + S + L Q++LMG E+ R
Sbjct: 71 FQEPVWWKAGAQILSSEGLDYLGKPNLVHAQSIVATLAVQVILMGSAEAYRAA------- 123
Query: 165 QSVEWATPWSRTAENFANATGEQG----YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLK 220
+A G G YPGG FDPL A D + L LK
Sbjct: 124 ----------------GSAPGVDGLDKLYPGGP-FDPLEFAS---------DPDTLAELK 157
Query: 221 VAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
V EIK+ RLAM +M F+ +A GK PL L
Sbjct: 158 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL 189
>gi|217944|dbj|BAA03104.1| light-harvesting chlorophyll a/b-binding protein (LHCP) precursor
[Lactuca sativa]
Length = 266
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 105/252 (41%), Gaps = 54/252 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLIN--PEWLDGSLPGDYGFD 79
S + L G RV+ K + A P W VK G P +L G PGDYG+D
Sbjct: 22 SSSELFGNGRVSMRKTAAAKKAAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 81
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 82 TAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 141
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ TQ++LMG VE R P +
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------------GGPLGEVVDPL 189
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 190 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 232 AIVTGKGPLENL 243
>gi|18266039|gb|AAL67432.1|AF458406_1 chlorophyll a/b binding protein [Brassica oleracea]
Length = 266
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV EIK
Sbjct: 176 -VAGEGPLGE-AEDLL-------YPGGS-FDPLGLAA---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|4139216|gb|AAD03731.1| light harvesting complex II protein precursor [Chlamydomonas
reinhardtii]
Length = 254
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 54 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCLTPELLAKSGTK 113
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + L Q++LMG +E R P
Sbjct: 114 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATLAVQVILMGLIEGYRVNG--GPAG 171
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 172 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 203
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ LAM +M F+ +A GK P+ L
Sbjct: 204 KNGALAMFSMFGFFVQAIVTGKGPVQNL 231
>gi|351734432|ref|NP_001235996.1| uncharacterized protein LOC100305992 [Glycine max]
gi|255627211|gb|ACU13950.1| unknown [Glycine max]
Length = 240
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 93/201 (46%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPL LG+ P L+ ++E+ELIH WAM AV GI V +A W
Sbjct: 50 RPPYLDGSAPGDFGFDPLRLGEVPENLERFKESELIHCGWAMLAVPGILVPEALGLGNWV 109
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R
Sbjct: 110 KAQEWAAVPGGQATYLGNPVPWGTLPTILAIEFLAISFVEHQR----------------- 152
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
+ ++ YPGG FDPL Y D + KV E+K+ RLA++
Sbjct: 153 ------SMGKDPEKKKYPGGA-FDPLG---------YSKDPKTFHEYKVKELKNGRLALL 196
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 197 AFVGFCVQQSAYPGTGPLENL 217
>gi|2407314|gb|AAB70556.1| chlorophyll a/b binding protein [Tetraselmis sp. RG-15]
Length = 251
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 96/228 (42%), Gaps = 58/228 (25%)
Query: 38 KKSVVVAAL----PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWY 93
+K V AA+ P + W+ G + P +L G PGDYG+D GL DP Y
Sbjct: 24 QKQVTRAAVEFYGPDRAKWL----GPFSDDTPSYLTGEFPGDYGWDTAGLSADPETFASY 79
Query: 94 REAELIHGRWAMAAVVGI--------FVGQAWSGIPWFEAGA------------DPGAIA 133
RE ELIH RWAM +G + G + WF+AGA + +
Sbjct: 80 RELELIHARWAMLGALGCVTPELLSKYAGVEFGEAVWFKAGAQIFADGGLDYLGNSSLVH 139
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
S ++LG Q++LMG E+ R P + +PGG
Sbjct: 140 AQSILAILGCQVVLMGGAEAFRVN------------GGPLGEDLDKL--------HPGGA 179
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
FDPL LA D + LKV EIK+ RLAM +M F+ +A
Sbjct: 180 -FDPLGLA---------DDPDTFSELKVKEIKNGRLAMFSMFGFFVQA 217
Score = 37.4 bits (85), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----P 121
E LD PG FDPLGL DP + E+ +GR AM ++ G FV +G
Sbjct: 169 EDLDKLHPGG-AFDPLGLADDPDTFSELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPVEN 227
Query: 122 WFEAGADPGAIAPFSFGS 139
W E ADP F + +
Sbjct: 228 WAEHIADPSGSNGFVYAT 245
>gi|87313211|gb|ABD37902.1| light-harvesting chlorophyll-a/b binding protein LhcbM5
[Acutodesmus obliquus]
Length = 250
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/203 (33%), Positives = 89/203 (43%), Gaps = 52/203 (25%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G GDYG+D GL DP + YRE ELIH RWAM +G + A +G+P
Sbjct: 56 TPGYLTGEFAGDYGWDTAGLSADPETFRRYRELELIHARWAMLGALGCITPELLAKNGVP 115
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA + I S + L Q++LMG VE R P
Sbjct: 116 FGEAVWFKAGAQIFQEGGLNYLGNSSLIHAQSILATLACQVILMGLVEGYRVNG--GPAG 173
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 174 EGLDPLYP-------------------GEAFDPLGLA---------DDPDTFAELKVKEI 205
Query: 225 KHARLAMVAMLIFYFEA---GQG 244
K+ RLAM +M F+ +A GQG
Sbjct: 206 KNGRLAMFSMFGFFVQAIVTGQG 228
>gi|115778|sp|P13851.1|CB21_SINAL RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|21138|emb|CAA34459.1| unnamed protein product [Sinapis alba]
gi|21140|emb|CAA33903.1| chlorophyll a/b-binding polypeptide [Sinapis alba]
Length = 266
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/207 (35%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV EIK
Sbjct: 176 -VAGEGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|146403796|gb|ABQ32304.1| chloroplast light-harvesting chlorophyll a/b-binding protein
[Artemisia annua]
Length = 254
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 104/252 (41%), Gaps = 54/252 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLIN--PEWLDGSLPGDYGFD 79
S + L G RV+ K + P W VK G P +L G PGDYG+D
Sbjct: 10 SNSELLGNGRVSMRKTAAPKKVAPSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWD 69
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 70 TAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSE 129
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ TQ++LMG VE R P +
Sbjct: 130 GGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------------GGPLGEVVDPL 177
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV E+K+ RLAM +M F+ +
Sbjct: 178 --------YPGGS-FDPLGLAD---------DPEAFAELKVKELKNGRLAMFSMFGFFVQ 219
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 220 AIVTGKGPLENL 231
>gi|14423661|sp|P92919.1|CB23_APIGR RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Allergen=Api g 3; Flags: Precursor
gi|1769849|emb|CAA99993.1| chlorophyll a/b binding protein [Apium graveolens]
Length = 264
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S S+ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEGYRVA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E+ LKV E+K
Sbjct: 177 ----GGPLGEIVDPL--------YPGGS-FDPLGLA---------EDPERSAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|115467828|ref|NP_001057513.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|3789954|gb|AAC67558.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|54290899|dbj|BAD61582.1| chlorophyll a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113595553|dbj|BAF19427.1| Os06g0320500 [Oryza sativa Japonica Group]
gi|125597037|gb|EAZ36817.1| hypothetical protein OsJ_21156 [Oryza sativa Japonica Group]
gi|215686348|dbj|BAG87609.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704347|dbj|BAG93781.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 241
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 96/201 (47%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV G+ V +A W
Sbjct: 51 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWV 110
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A+PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 111 QAQEWAAEPGGQATYLGNPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------ 163
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL G KD V K + K+ EIK+ RLAM+
Sbjct: 164 ----------------YPGGA-FDPL---GFSKDPV------KFEEYKLKEIKNGRLAML 197
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 198 AFVGFCVQQSAYPGTGPLENL 218
>gi|115826|sp|P22686.1|CB2_CHLMO RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|18063|emb|CAA38635.1| chlorophyll a/b-binding protein [Chlamydomonas moewusii]
Length = 256
Score = 81.6 bits (200), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 91/209 (43%), Gaps = 51/209 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ---AWSGI 120
P +L G PGDYG+D GL DP K YRE E+IH RWA+ +GI + ++G+
Sbjct: 55 TPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGV 114
Query: 121 P-----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA P I + + L Q++LMG +E R P
Sbjct: 115 KFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNG--GPA 172
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
+ ++ P G+ FDPL LA D + LKV E
Sbjct: 173 GEGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKE 204
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ RLAM + F+ +A GK P+ L
Sbjct: 205 IKNGRLAMFSCFGFFVQAIVTGKGPIQNL 233
>gi|308813724|ref|XP_003084168.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
gi|63029295|gb|AAY27546.1| chloroplast light-harvesting complex I protein precursor Lhca3
[Ostreococcus tauri]
gi|116056051|emb|CAL58584.1| PSI-associated light-harvesting chlorophyll a/b binding protein,
(IC) [Ostreococcus tauri]
Length = 272
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 91/191 (47%), Gaps = 43/191 (22%)
Query: 67 WLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQAW--- 117
+LDGSLPGDYGFDPLGL DP F+ KW +ELIHGRWAM V G+ +
Sbjct: 61 YLDGSLPGDYGFDPLGL-SDPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGM 119
Query: 118 ------SGIPWFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
+G+ WF+AG P +PF ++ LM E +R D++NP S
Sbjct: 120 GIIPQETGLVWFKAGMIPAQGTYDYWASPF---TIFWINAFLMNIAELRRAQDYWNPGSM 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK-LDRLKVAEI 224
+ E +G+ YPGG FF+ ++ EK + +K EI
Sbjct: 177 GKQDFA----GLEKMLGGSGDPAYPGG-FFN------------FMKQGEKDMAAMKTKEI 219
Query: 225 KHARLAMVAML 235
K+ RLAM+A
Sbjct: 220 KNGRLAMMACF 230
>gi|326488085|dbj|BAJ89881.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFNEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGALG 252
+ RLAM +M F+ +A GK PL LG
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENLG 244
>gi|2804572|dbj|BAA24493.1| chlorophyll a/b-binding protein [Fagus crenata]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENL 241
>gi|102140026|gb|ABF70157.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 264
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 80/248 (32%), Positives = 106/248 (42%), Gaps = 57/248 (22%)
Query: 31 TNRVTSSKKSVVV---AALPPKKSWI----PAVKGGGNLINPEWLDGSLPGDYGFDPLGL 83
RV SS+ + A PK W P G + P +L G PGDYG+D GL
Sbjct: 24 VRRVGSSRGRFFMRRTTASTPKSIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGL 83
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA--------- 127
DP RE E+IHGRWAM +G + A +G+ WF+AGA
Sbjct: 84 SADPETFAKNRELEVIHGRWAMLGALGCVFPEILAKNGVKFGEAVWFKAGAQIFSEGGLD 143
Query: 128 ---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
+P I S ++ Q++LMG+VE R P + ++
Sbjct: 144 YLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLGEGLDAI-------------- 187
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A
Sbjct: 188 ----YPGGAF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 233
Query: 244 GKTPLGAL 251
GK P+ L
Sbjct: 234 GKGPIENL 241
>gi|47026843|gb|AAT08647.1| chloroplast chlorophyll A-B binding protein 3C [Hyacinthus
orientalis]
Length = 220
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 24 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 83
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ+LLMG VE R
Sbjct: 84 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVLLMGAVEGYRVA-------- 135
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 136 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 173
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 174 NGRLAMFSMFGFFVQAIVTGKGPLENL 200
>gi|225580691|gb|ACN94453.1| photosystem I light-harvesting cholrophyll-a/b protein 2
[Dunaliella salina]
Length = 228
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 93/197 (47%), Gaps = 44/197 (22%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA 125
E+L+ LPG++ FDPL LGK+ L+ YREAELIH RWAM G + W++A
Sbjct: 45 EYLN-DLPGNFNFDPLELGKEKGTLQRYREAELIHCRWAMLGAAGCLAVEVLGLGNWYDA 103
Query: 126 ------GADP---GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 176
G P G PF ++LG +++ M E R ++Q +E
Sbjct: 104 PLWAVTGDKPTWFGIEVPFDIATILGVEVVAMAVAEGLR------NDNQDME-------- 149
Query: 177 AENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
++ YPGG FDPL + D + + K+ E+K+ RLAMVA L
Sbjct: 150 ---------KRLYPGGA-FDPLGFS---------KDPKSFEDKKLKELKNGRLAMVACLG 190
Query: 237 FYFE-AGQGKTPLGALG 252
F + A GK L ALG
Sbjct: 191 FAGQHAATGKPILEALG 207
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
FDPLG KDP + + EL +GR AM A +G A +G P EA D
Sbjct: 158 FDPLGFSKDPKSFEDKKLKELKNGRLAMVACLGFAGQHAATGKPILEALGD 208
>gi|693922|gb|AAA80594.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 104/252 (41%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA----- 127
GL DP RE E+IH RWAM +G G + + WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEVVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|194697528|gb|ACF82848.1| unknown [Zea mays]
Length = 283
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A +
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R + + E
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVILVGGAEYYRITNGLDLE---- 200
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 201 ------------------DKLHPGGP-FDPLGLAS---------DPDQAAILKVKEIKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM +M F+ +A
Sbjct: 233 RLAMFSMFAFFIQA 246
>gi|17473828|gb|AAL38341.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21387019|gb|AAM47913.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 267
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR--------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
V P AE+ YPGG FDPL LA D E LKV E+
Sbjct: 177 --VAGNEPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEL 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPIENL 244
>gi|224083006|ref|XP_002306927.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118487931|gb|ABK95787.1| unknown [Populus trichocarpa]
gi|118489514|gb|ABK96559.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489848|gb|ABK96723.1| unknown [Populus trichocarpa x Populus deltoides]
gi|118489863|gb|ABK96730.1| unknown [Populus trichocarpa x Populus deltoides]
gi|222856376|gb|EEE93923.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|374095596|gb|AEY85026.1| light-harvesting complex II protein [Cajanus cajan]
Length = 262
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 122
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 123 GEAVWFKAGSLIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 175 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENL 239
>gi|94404555|gb|ABF17940.1| putative chloroplast chlorophyll a/b-binding protein [Carya
cathayensis]
Length = 267
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 180 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|356559639|ref|XP_003548106.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 1 [Glycine max]
gi|356559641|ref|XP_003548107.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 2 [Glycine max]
gi|356559643|ref|XP_003548108.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic
isoform 3 [Glycine max]
Length = 264
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|224085884|ref|XP_002307725.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|118485884|gb|ABK94788.1| unknown [Populus trichocarpa]
gi|222857174|gb|EEE94721.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|53627226|gb|AAU89264.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus nelsonii]
Length = 256
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 106/246 (43%), Gaps = 59/246 (23%)
Query: 31 TNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
T R +++KKSVV A+ P + ++ G P +L G PGDYG+D GL
Sbjct: 37 TMRKSATKKSVVSASPSPWYGPDRVLYLGPFSGE----PPSYLTGEFPGDYGWDTAGLSA 92
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----------- 127
DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 93 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 152
Query: 128 -DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+P I S ++ Q++LMG VE R P +
Sbjct: 153 GNPSLIHAQSILAIWACQVILMGAVEGYRIA------------GGPLGEVTDPI------ 194
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGK 245
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A GK
Sbjct: 195 --YPGGSF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 246 TPLGAL 251
P+ L
Sbjct: 243 GPIENL 248
>gi|188572008|gb|ACD64978.1| chloroplast chlorophyll a/b-binding protein [Ophiopogon japonicus]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFSELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|339716054|gb|AEJ88274.1| putative chlorophyll a/b binding protein [Wolffia australiana]
Length = 279
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P +L+G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A++
Sbjct: 81 PAYLNGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 140
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R ++ + E
Sbjct: 141 GPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVIAEVVLLGGAEYYRIINGLDLE---- 196
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LK EIK+
Sbjct: 197 ------------------DKLHPGGP-FDPLGLAS---------DPDQAAILKAKEIKNG 228
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML F+ +A
Sbjct: 229 RLAMFAMLGFFLQA 242
>gi|255647011|gb|ACU23974.1| unknown [Glycine max]
Length = 264
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P + G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYRTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
H RLAM +M F+ +A GK PL L
Sbjct: 215 HGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|115439621|ref|NP_001044090.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|18461220|dbj|BAB84417.1| putative chlorophyll a/b-binding protein 3C precursor [Oryza sativa
Japonica Group]
gi|113533621|dbj|BAF06004.1| Os01g0720500 [Oryza sativa Japonica Group]
gi|125527527|gb|EAY75641.1| hypothetical protein OsI_03546 [Oryza sativa Indica Group]
gi|125571846|gb|EAZ13361.1| hypothetical protein OsJ_03282 [Oryza sativa Japonica Group]
gi|215678907|dbj|BAG96337.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215679047|dbj|BAG96477.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215764952|dbj|BAG86649.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 265
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ G Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWGCQVVLMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|115814|sp|P27490.1|CB28_PEA RecName: Full=Chlorophyll a-b binding protein 8, chloroplastic;
AltName: Full=LHCII type I CAB-8; Flags: Precursor
gi|20669|emb|CAA39883.1| chlorophyll a/b binding protein [Pisum sativum]
Length = 268
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 68 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 127
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 128 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 181 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 217
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|87313205|gb|ABD37899.1| light-harvesting chlorophyll-a/b binding protein LhcbM2
[Acutodesmus obliquus]
Length = 249
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/202 (35%), Positives = 90/202 (44%), Gaps = 49/202 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G GDYG+D GL DP YRE E+IH RWAM +G + A +G+P
Sbjct: 47 PAYLTGEFAGDYGWDTAGLSADPQTFAKYREIEVIHARWAMLGALGCITPELLAKNGVPF 106
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA + + S + L Q+LLMG ES R
Sbjct: 107 GEAVWFKAGAQIFQDGGLNYLGNENLVHAQSILATLAVQVLLMGAAESYR---------- 156
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P E+ + YPGG FDPL LA D + L LKV EIK
Sbjct: 157 -ANGGAP-GGFGEDL-----DSLYPGGA-FDPLGLA---------DDPDTLAELKVKEIK 199
Query: 226 HARLAMVAMLIFYFEA---GQG 244
+ RLAM +M F+ +A GQG
Sbjct: 200 NGRLAMFSMFGFFVQAIVTGQG 221
>gi|115785|sp|P08963.1|CB22_HORVU RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|18943|emb|CAA31232.1| LHC precursor protein (AA -34 to 230) [Hordeum vulgare]
Length = 264
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 64 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVK 123
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+ G+ +P + S ++ Q++LMG VE R
Sbjct: 124 FGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 177 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------DDAEAFAELKVKEI 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|18958|emb|CAA44777.1| Precursor of CP29, core chlorophyll a/b binding (CAB) protein of
photosystem II (PSII) [Hordeum vulgare subsp. vulgare]
gi|326511355|dbj|BAJ87691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|445122|prf||1908428A chlorophyll a/b-binding protein
Length = 286
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/179 (37%), Positives = 87/179 (48%), Gaps = 19/179 (10%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A + F
Sbjct: 88 PEYLNGEVPGDYGYDPFGLGKKPEDFAKYQAFELIHARWAMLGAAGFIIPEALNK---FG 144
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + E V A + T
Sbjct: 145 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLILAVVAEVVLVGGAEYYRITN---GL 200
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
++ +PGG FDPL LA PD L LKV EIK+ RLAM +ML F+ +A
Sbjct: 201 EFDDKLHPGGP-FDPLGLATD-------PDQAAL--LKVKEIKNGRLAMFSMLGFFIQA 249
>gi|168053458|ref|XP_001779153.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669412|gb|EDQ55999.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 213
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 87/207 (42%), Gaps = 51/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--- 121
PE+L G PGDYG D L + P R EL++GRWAM + G V + + P
Sbjct: 32 PEYLKGEYPGDYGCDIFKLVRLPENYAKLRSQELMNGRWAMLGITGCLVPELINSNPTPG 91
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+ GA PG I S +++ Q LLMG E R +PE
Sbjct: 92 FEPVWFKTGAQIFSEAGIDYLGVPGFINAHSLVAVIVVQALLMGVAEYARIK--LSPEGN 149
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
+ YPGGK FDPL + D E LKV EIK
Sbjct: 150 --------------------DAFYPGGKAFDPLGFSS---------DPESFAELKVKEIK 180
Query: 226 HARLAMVAML-IFYFEAGQGKTPLGAL 251
+ RLAM+AM +F A G +PL L
Sbjct: 181 NGRLAMMAMAGLFAQGAVTGVSPLQNL 207
Score = 43.9 bits (102), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
++PE D PG FDPLG DP + E+ +GR AM A+ G+F A +G+
Sbjct: 144 LSPEGNDAFYPGGKAFDPLGFSSDPESFAELKVKEIKNGRLAMMAMAGLFAQGAVTGV 201
>gi|22750|emb|CAA78900.1| Lhcb5 protein [Pinus sylvestris]
gi|1093837|prf||2104448A Lhcb5 gene
Length = 302
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 67/180 (37%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GLG+ P Y+ ELIH RWAM G + +A++ F
Sbjct: 104 PEYLNGEVPGDYGYDPFGLGRKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 160
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT-AENFA 181
A P A+ F G+LL G L G + E V A + T NF
Sbjct: 161 AYCGPEAVW-FKTGALLLDGGTLSYFGASIPINLIAAVVAEVVLVGGAEYYRATNGLNFD 219
Query: 182 NATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
+ +PGG FDPL LA D ++ LKV EIK+ RLAM +ML F+ +A
Sbjct: 220 DKL----HPGGP-FDPLGLA---------KDPDQFALLKVKEIKNGRLAMFSMLGFFLQA 265
>gi|162461137|ref|NP_001105374.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
gi|733456|gb|AAA64415.1| chlorophyll a/b-binding apoprotein CP26 precursor [Zea mays]
Length = 283
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 86/194 (44%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L G +PGDYG+DP GLGK P Y+ ELIH RWAM G + +A +
Sbjct: 85 PEYLTGEVPGDYGYDPFGLGKKPEDFAKYQAYELIHARWAMLGAAGAVIPEACNKFGANC 144
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R + + E
Sbjct: 145 GPEAVWFKTGALLLDGNTLNYFGNSIPINLVVAVIAEVVLVGGAEYYRITNGLDLE---- 200
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 201 ------------------DKLHPGGP-FDPLGLAS---------DPDQAAILKVKEIKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM +M F+ +A
Sbjct: 233 RLAMFSMFAFFIQA 246
>gi|225690802|gb|ACO06087.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 291
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 87/188 (46%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV---------- 113
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM V G+ V
Sbjct: 79 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWV 138
Query: 114 -GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
Q W+ +P +A + + ++L + L + + E +R ++ +PE
Sbjct: 139 KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPE--------- 188
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL + D K + LK+ EIK+ RLAM+
Sbjct: 189 -------------KKKYPGGA-FDPL---------GFSKDPAKFEELKLKEIKNGRLAML 225
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 226 AFVGFCVQ 233
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA + + E+ +GR AM A VG V Q+
Sbjct: 197 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQS 235
>gi|157786302|gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
Length = 266
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 179 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|53627224|gb|AAU89263.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus longaeva]
Length = 253
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 106/246 (43%), Gaps = 59/246 (23%)
Query: 31 TNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
T R +++KKSVV A+ P + ++ G P +L G PGDYG+D GL
Sbjct: 34 TMRKSATKKSVVSASPSPWYGPDRVLYLGPFSGE----PPSYLTGEFPGDYGWDTAGLSA 89
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----------- 127
DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 90 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 149
Query: 128 -DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+P I S ++ Q++LMG VE R P +
Sbjct: 150 GNPSLIHAQSILAIWACQVILMGAVEGYRIA------------GGPLGEVTDPI------ 191
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGK 245
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A GK
Sbjct: 192 --YPGGSF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 239
Query: 246 TPLGAL 251
P+ L
Sbjct: 240 GPIENL 245
>gi|18403546|ref|NP_565786.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|13926260|gb|AAK49602.1|AF372886_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16226426|gb|AAL16165.1|AF428397_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930391|gb|AAL31882.1|AF419548_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16930467|gb|AAL31919.1|AF419587_1 At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|16364|emb|CAA45790.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128230|gb|AAC26710.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|14517452|gb|AAK62616.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|15027899|gb|AAK76480.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|17473689|gb|AAL38301.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|19310503|gb|AAL84985.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|19310521|gb|AAL84994.1| At2g34420/T31E10.24 [Arabidopsis thaliana]
gi|20148517|gb|AAM10149.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|20197168|gb|AAM14954.1| photosystem II type I chlorophyll a b binding protein [Arabidopsis
thaliana]
gi|23296426|gb|AAN13114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|110739111|dbj|BAF01472.1| photosystem II type I chlorophyll a/b binding protein [Arabidopsis
thaliana]
gi|330253878|gb|AEC08972.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 265
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 175 -VAGDGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|307106821|gb|EFN55066.1| hypothetical protein CHLNCDRAFT_35848 [Chlorella variabilis]
Length = 219
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 88/199 (44%), Gaps = 47/199 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +L+ +LP YGFDPLGL K+ L+ ++E+E+IHGRWAM G+ + W+
Sbjct: 37 TPAYLE-NLPASYGFDPLGLAKEAPSLQRFKESEVIHGRWAMLGAAGVLGVEVLGYGNWY 95
Query: 124 EA---------GADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
+A GA PF G+L + M ES R A P
Sbjct: 96 DAPLPLVQGGSATYFGASIPFDLGTLAAIEFAAMAGAESFRGA------------AEPEK 143
Query: 175 RTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234
R YPGG FDP AG K D L+ EIK+ RLAM+A
Sbjct: 144 RV------------YPGGP-FDP---AGMSKG--------NQDELRTKEIKNGRLAMIAC 179
Query: 235 LIFYFE-AGQGKTPLGALG 252
L F + A G +PL ALG
Sbjct: 180 LGFVAQHAATGASPLEALG 198
>gi|414884910|tpg|DAA60924.1| TPA: hypothetical protein ZEAMMB73_235289 [Zea mays]
Length = 315
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 74/216 (34%), Positives = 89/216 (41%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
PE+L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 112 PEYLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGLVH 171
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G + + Q LLM E R+
Sbjct: 172 FVEPVWWKVGYAKLQGDNLDYLGIPGFRIAGGQGVVV------IAICQALLMVGPEYARY 225
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ KD V D
Sbjct: 226 C--------GIEALEPLG------IYLPGDINYPGGPLFDPLGLS---KDPVAFED---- 264
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LKV EIK+ RLAMVA FY +A GK P+ L
Sbjct: 265 --LKVKEIKNGRLAMVAWFGFYIQAAVTGKGPVQNL 298
>gi|15220615|ref|NP_174286.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
gi|115783|sp|P04778.1|CB1C_ARATH RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=Chlorophyll a-b protein 140;
Short=CAB-140; AltName: Full=LHCII type I CAB-1; Flags:
Precursor
gi|9972353|gb|AAG10603.1|AC008030_3 Putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16226883|gb|AAL16289.1|AF428359_1 At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|16376|emb|CAA27543.1| chlorophyll a/b binding protein (LHCP AB 140) [Arabidopsis
thaliana]
gi|15010744|gb|AAK74031.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|15293003|gb|AAK93612.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16648807|gb|AAL25594.1| At1g29930/F1N18_23 [Arabidopsis thaliana]
gi|20258873|gb|AAM14108.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|332193030|gb|AEE31151.1| chlorophyll a-b binding protein 1 [Arabidopsis thaliana]
Length = 267
Score = 80.9 bits (198), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR--------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
V P AE+ YPGG FDPL LA D E LKV E+
Sbjct: 177 --VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEL 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPIENL 244
>gi|8954293|gb|AAD27879.2|AF139467_1 LHCII type I chlorophyll a/b binding protein [Vigna radiata]
Length = 263
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +GI + S G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEPLSRNGVKF 123
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYR---------- 173
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
A + YPGG F DPL LA D E LKV E+K
Sbjct: 174 ----------IAGGPLGEVTDPTYPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM ++ F+ +A GK PL L
Sbjct: 214 NGRLAMFSVFGFFVQAIVTGKGPLENL 240
>gi|56809379|gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
sativum]
Length = 266
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 179 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEL 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|21592428|gb|AAM64379.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
Length = 266
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVEF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 176 -VAGDGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|18403549|ref|NP_565787.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
gi|11908034|gb|AAG41446.1|AF326864_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|12642854|gb|AAK00369.1|AF339687_1 putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|16366|emb|CAA45789.1| photosystem II type I chlorophyll a /b binding protein [Arabidopsis
thaliana]
gi|3128229|gb|AAC26709.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|20197164|gb|AAM14951.1| putative photosystem II type I chlorophyll a b binding protein
[Arabidopsis thaliana]
gi|21539563|gb|AAM53334.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|25083751|gb|AAN72114.1| putative photosystem II type I chlorophyll a/b binding protein
[Arabidopsis thaliana]
gi|330253879|gb|AEC08973.1| light-harvesting complex II chlorophyll a/b binding protein 1
[Arabidopsis thaliana]
Length = 266
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 176 -VAGDGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|224114357|ref|XP_002316737.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
gi|222859802|gb|EEE97349.1| light-harvesting complex II protein Lhcb1 [Populus trichocarpa]
Length = 264
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWATQVVLMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|102139745|gb|ABF69952.1| chlorophyll A-B binding protein (CAB), putative [Musa acuminata]
Length = 265
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|18397286|ref|NP_564339.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|18397288|ref|NP_564340.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|317374860|sp|P0CJ48.1|CB1A_ARATH RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=Chlorophyll a-b protein 165;
Short=CAB-165; AltName: Full=LHCII type I CAB-2; Flags:
Precursor
gi|317374942|sp|Q8VZ87.2|CB1B_ARATH RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=Chlorophyll a-b protein 180;
Short=CAB-180; AltName: Full=LHCII type I CAB-3; Flags:
Precursor
gi|9972354|gb|AAG10604.1|AC008030_4 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|9972355|gb|AAG10605.1|AC008030_5 chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|16368|emb|CAA27540.1| chlorophyll a/b binding protein (LHCP AB 65) [Arabidopsis thaliana]
gi|16372|emb|CAA27541.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
gi|15529226|gb|AAK97707.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|15809862|gb|AAL06859.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|16974375|gb|AAL31113.1| At1g29920/F1N18_80 [Arabidopsis thaliana]
gi|17065476|gb|AAL32892.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|20148487|gb|AAM10134.1| chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|21555860|gb|AAM63949.1| photosystem II type I chlorophyll a /b binding protein, putative
[Arabidopsis thaliana]
gi|22135932|gb|AAM91548.1| photosystem II type I chlorophyll a/b binding protein, putative
[Arabidopsis thaliana]
gi|23397170|gb|AAN31868.1| putative photosystem II type I chlorophyll a /b binding protein
[Arabidopsis thaliana]
gi|332193028|gb|AEE31149.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
gi|332193029|gb|AEE31150.1| chlorophyll a-b binding protein 2/3 [Arabidopsis thaliana]
Length = 267
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR--------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
V P AE+ YPGG FDPL LA D E LKV E+
Sbjct: 177 --VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEL 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPIENL 244
>gi|297823231|ref|XP_002879498.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
gi|297325337|gb|EFH55757.1| LHB1B1 [Arabidopsis lyrata subsp. lyrata]
Length = 266
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 176 -VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|358248490|ref|NP_001240146.1| chlorophyll a-b binding protein 21, chloroplastic-like [Glycine
max]
gi|506629|gb|AAA50172.1| photosystem II type I chlorophyll a/b-binding protein [Glycine max]
gi|255636158|gb|ACU18421.1| unknown [Glycine max]
Length = 264
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|356559635|ref|XP_003548104.1| PREDICTED: chlorophyll a-b binding protein 21, chloroplastic-like
[Glycine max]
Length = 264
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|242044232|ref|XP_002459987.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
gi|241923364|gb|EER96508.1| hypothetical protein SORBIDRAFT_02g020290 [Sorghum bicolor]
Length = 314
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 76/216 (35%), Positives = 89/216 (41%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
PE L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 111 PEHLTGEYPGDYGFDIAGLGRDPIAFANYFNFEILHCRWAMLAALGVVIPELLDLFGLVH 170
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G I + Q LLM E R+
Sbjct: 171 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIV------IAICQALLMVGPEYARY 224
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ KD V D
Sbjct: 225 C--------GIEALEPLG------IYLPGDINYPGGALFDPLGLS---KDPVAFED---- 263
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 264 --LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNL 297
>gi|168000216|ref|XP_001752812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168000420|ref|XP_001752914.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162695975|gb|EDQ82316.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696077|gb|EDQ82418.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 227
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 99/212 (46%), Gaps = 47/212 (22%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P ++ ++P + I PE+L G +PGDYG+DP GL K P Y+ ELIH RWAM
Sbjct: 9 PDRRIYLPEGLLAKDEI-PEYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAML 67
Query: 107 AVVGIFVGQAWSGI--------PWFEAGA-----DP----GAIAPFSFGSLLGTQLLLMG 149
G + +A++ W++ GA D GA P + + + +++L+G
Sbjct: 68 GAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPLNLAAAVIAEVILVG 127
Query: 150 WVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVY 209
E R T ++ + ++ +PGG FDPL LA
Sbjct: 128 GAEYYR-------------------STNKSPLGSDLDRLHPGGA-FDPLGLA-------- 159
Query: 210 IPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D ++ LKV EIK+ RLAM +ML F+ +A
Sbjct: 160 -KDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 190
>gi|102139977|gb|ABF70112.1| chlorophyll A-B binding protein (CAB), putative [Musa balbisiana]
Length = 267
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|556367|gb|AAA50310.1| light-harvesting chlorophyll a/b-binding protein [Prunus persica]
Length = 267
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 127
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 180 ----GGPLGEITDPL--------YPGGSF-DPLGLA---------EDPEAFAELKVKELK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPIENL 244
>gi|168025870|ref|XP_001765456.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683306|gb|EDQ69717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 266
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/249 (30%), Positives = 104/249 (41%), Gaps = 54/249 (21%)
Query: 23 KSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLG 82
SQA ++ V+ S S + + W+ G P +L+G GDYG+D G
Sbjct: 29 SSQARVSMRKTVSKSSGSDSIWYGADRPKWLGPFSGE----TPSYLNGEFAGDYGWDTAG 84
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA-------- 127
L DP RE E+IH RWAM +G + A SG+ WF+AGA
Sbjct: 85 LSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKFGEAVWFKAGAQIFSEGGL 144
Query: 128 ----DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
+P + S ++ +Q++LMG VE R P +
Sbjct: 145 DYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA------------GGPLGDVTDPI--- 189
Query: 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-G 242
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A
Sbjct: 190 -----YPGGSF-DPLGLA---------DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIV 234
Query: 243 QGKTPLGAL 251
GK PL L
Sbjct: 235 TGKGPLENL 243
>gi|145079310|tpg|DAA05909.1| TPA_inf: chloroplast light-harvesting complex II protein precursor
Lhcbm3 [Acetabularia acetabulum]
Length = 208
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 84/190 (44%), Gaps = 50/190 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P +L G PGDYG+D GL DP K YRE ELIH R+AM +G + G +
Sbjct: 49 PSYLTGEFPGDYGWDTAGLSADPETFKKYRETELIHARFAMLGALGCVTPELLAKYGGVS 108
Query: 117 WSGIPWFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF AGA P I S G+++ +Q++LMG VE R P
Sbjct: 109 FGESVWFRAGAQIFQEGGLDYLGSPALIHAQSIGAIVISQVVLMGLVEGYRVNG--GPAG 166
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA PDT LK+ EI
Sbjct: 167 EGLDSLYP-------------------GESFDPLGLADD-------PDT--FAELKIKEI 198
Query: 225 KHARLAMVAM 234
K+ RLAM +M
Sbjct: 199 KNGRLAMFSM 208
>gi|384246503|gb|EIE19993.1| chlorophyll a/b-binding protein [Coccomyxa subellipsoidea C-169]
Length = 254
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 104/257 (40%), Gaps = 62/257 (24%)
Query: 24 SQALLAGTNRVTSSKKS----VVVAAL----PPKKSWIPAVKGGGNLINPEWLDGSLPGD 75
S + + R SS KS V A++ P + ++ G P +L G PGD
Sbjct: 7 SNSFVVSARRTVSSPKSKGKQVTRASIEWYGPDRPKFLGPYSDGAT---PSYLKGEYPGD 63
Query: 76 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV--------GQAWSGIPWFEAGA 127
YG+D GL DP YRE E+IH RWA+ +GI G + WF+AGA
Sbjct: 64 YGWDTAGLSADPETFSRYREIEVIHSRWALLGTLGIVTPELLEKYGGVKFQEAVWFKAGA 123
Query: 128 ------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
+P + S + + TQ++L+G E R
Sbjct: 124 QIFSADGLNYLGNPSLVHAQSIIATVATQVILLGLAEGYR-------------------- 163
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
A + YPGG F DPL LA D + LKV EIK+ RLA A L
Sbjct: 164 VNGGPAGEITDPLYPGGAF-DPLGLAD---------DPDTFAELKVKEIKNGRLAQFAAL 213
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK P+ L
Sbjct: 214 GFFVQAIVTGKGPIQNL 230
>gi|297826903|ref|XP_002881334.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
gi|297327173|gb|EFH57593.1| chlorophyll A-B-binding protein 2 precursor [Arabidopsis lyrata
subsp. lyrata]
Length = 245
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 45 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 104
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 105 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 154
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 155 -VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 195
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 196 NGRLAMFSMFGFFVQAIVTGKGPLENL 222
>gi|224284588|gb|ACN40027.1| unknown [Picea sitchensis]
Length = 278
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 108/257 (42%), Gaps = 61/257 (23%)
Query: 20 GGKKSQALLAGTNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNLINPEWLDGSLPG 74
GG +A L T R + KKSV ++ P + ++ G P +L G PG
Sbjct: 35 GGGHGEARL--TMRKATGKKSVAASSDSPWYGPDRVLYLGPFSG----EQPSYLTGEFPG 88
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA 127
DYG+D GL DP RE E+IHGRWAM +G + A +G+ WF+AGA
Sbjct: 89 DYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKAGA 148
Query: 128 D------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
P + S ++L Q++LMG +E R P
Sbjct: 149 QIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA------------GGPLGE 196
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ YPGG FDPL A D + LKV E+K+ RLAM +M
Sbjct: 197 VTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELKNGRLAMFSMF 238
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK PL L
Sbjct: 239 GFFVQAIVTGKGPLENL 255
>gi|2196772|gb|AAB61237.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFTKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG +E R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVTDPL--------YPGGSF-DPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|357152998|ref|XP_003576305.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357153000|ref|XP_003576306.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357153003|ref|XP_003576307.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 80.5 bits (197), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 103/248 (41%), Gaps = 54/248 (21%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFDPLGL 83
L G RVT K + +P W A + G + P +L G PGDYG+D GL
Sbjct: 26 LFGEARVTMRKTAAKAKPVPSGSPWYGADRVLYLGPLSGQPPSYLTGEFPGDYGWDTAGL 85
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA--------- 127
DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 86 SADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 128 ---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
+P + S ++ Q++LMG VE R P +
Sbjct: 146 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL---- 189
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
YPGG FDPL LA D E LKV E+K+ RLAM +M F+ +A
Sbjct: 190 ----YPGGS-FDPLGLAD---------DPEAFAELKVKEVKNGRLAMFSMFGFFVQAIVT 235
Query: 244 GKTPLGAL 251
GK PL L
Sbjct: 236 GKGPLENL 243
>gi|353167261|gb|AEQ67395.1| chloroplast chlorophyll A/B binding protein [Canarium album]
Length = 264
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|384253340|gb|EIE26815.1| major light-harvesting complex II protein m10 [Coccomyxa
subellipsoidea C-169]
Length = 250
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L+G PGDYG+D GL DP YRE E+IH RWAM +G G +
Sbjct: 51 SPSYLNGEYPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCVTPELLAKNGVS 110
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ W++AG+ +P I S +++ +Q+LLMG +E R P
Sbjct: 111 FGEAVWWKAGSQIFAPGGLDYLGNPSLIHAQSIIAIVFSQVLLMGLIEGYRVNG--GPAG 168
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + L+V EI
Sbjct: 169 EGLDALYP-------------------GEAFDPLGLAD---------DPDTFAELRVKEI 200
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 201 KNGRLAMFSMFGFFVQAIVTGKGPIENL 228
>gi|308811240|ref|XP_003082928.1| unnamed protein product [Ostreococcus tauri]
gi|63029301|gb|AAY27549.1| chloroplast chlorophyll a/b-binding protein CP26 precursor Lhcb5
[Ostreococcus tauri]
gi|116054806|emb|CAL56883.1| unnamed protein product [Ostreococcus tauri]
Length = 316
Score = 80.5 bits (197), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 77/216 (35%), Positives = 103/216 (47%), Gaps = 39/216 (18%)
Query: 47 PPKKSWIPAVKGGGNLIN---PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRW 103
P +K ++P GG L P +LDG+L GDYGFDPLGLG D +K YR AE++H RW
Sbjct: 96 PNRKLYLP----GGLLTKADLPSYLDGTLAGDYGFDPLGLGAD-GKVKDYRVAEILHARW 150
Query: 104 AMAAVVGIFVGQAWSGIP---WFEAG-----ADPGAIAPFSFGSLL-GTQLLLMGWVESK 154
AM AV G+ + +A + IP W E G + G + F + Q++LMG E
Sbjct: 151 AMLAVPGVVIPEALN-IPGGVWTETGKVFLDGETGRDSILEFWPIYAAIQVVLMGGAEK- 208
Query: 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGG--KFFDPLCLAGTIKDGVYIPD 212
F + P+ E A + PGG FFD +
Sbjct: 209 -----FRQDGVGPAGFVPFKGKFEESAFNGLDPVNPGGPLDFFD------------VAKN 251
Query: 213 TEKLDRLKVAEIKHARLAMVAML-IFYFEAGQGKTP 247
+ L LKV EIK+ RLAM+AML +F A G+ P
Sbjct: 252 PQDLQILKVKEIKNGRLAMIAMLGVFVQGAVTGEGP 287
>gi|115788|sp|P07371.1|CB22_PEA RecName: Full=Chlorophyll a-b binding protein AB80, chloroplastic;
AltName: Full=LHCII type I CAB-AB80; Short=LHCP; Flags:
Precursor
gi|169053|gb|AAA63413.1| cab precursor [Pisum sativum]
gi|169055|gb|AAA33651.1| polypeptide 15 precursor [Pisum sativum]
gi|223990|prf||1006296A protein,chlorophyll a/b binding
Length = 269
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 69 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 128
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 129 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 181
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 182 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 218
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 219 KNGRLAMFSMFGFFVQAIVTGKGPLENL 246
>gi|357124424|ref|XP_003563900.1| PREDICTED: chlorophyll a-b binding protein 1B-21,
chloroplastic-like [Brachypodium distachyon]
Length = 247
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 93/202 (46%), Gaps = 46/202 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM V G+ V +A W
Sbjct: 56 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWV 115
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A P A + + ++L + L + + E +R ++ +PE +
Sbjct: 116 KAQEWAALPDGQATYFGVPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKK------ 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D K + LK+ EIK+ RLAM+
Sbjct: 169 ----------------YPGGA-FDPLGFSK---------DPAKFEELKLKEIKNGRLAML 202
Query: 233 AMLIFYFE--AGQGKTPLGALG 252
A + F + A G PL LG
Sbjct: 203 AFVGFCVQQSAYPGTGPLENLG 224
>gi|379069812|gb|AFC91647.1| chloroplast chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 265
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|3036945|dbj|BAA25390.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 FGEAVWFKAGSQIFSDGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 178 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|302808391|ref|XP_002985890.1| light-harvesting complex [Selaginella moellendorffii]
gi|300146397|gb|EFJ13067.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 87/199 (43%), Gaps = 45/199 (22%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P+ L GS PGDYGFD GLGKDPA + E++H RWAM A +G+ F G
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVK 175
Query: 117 WSGIPWFEAG------------ADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNP 162
++ W+ G PG + G L+ Q LLM E R+
Sbjct: 176 FAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGILVIAICQFLLMVGPEYARYC----- 230
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+E P G+ YPGG FDPL L+ D + LKV
Sbjct: 231 ---GIEALEPLG------IYLPGDINYPGGVLFDPLGLS---------KDPATFEELKVK 272
Query: 223 EIKHARLAMVAMLIFYFEA 241
EIK+ RLAMVA L FY +A
Sbjct: 273 EIKNGRLAMVAWLGFYVQA 291
>gi|237651899|gb|ACR08639.1| chloroplast chlorophyll A/B binding protein [Mangifera indica]
Length = 264
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|115807|sp|P12470.1|CB25_NICPL RecName: Full=Chlorophyll a-b binding protein E, chloroplastic;
AltName: Full=LHCII type I CAB-E; Short=LHCP; Flags:
Precursor
gi|170212|gb|AAA34056.1| chlorophyll a/b-binding protein-E [Nicotiana plumbaginifolia]
Length = 266
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 179 -----GEPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQALVTGKGPLENL 243
>gi|3036944|dbj|BAA25389.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRVA------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 178 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|2645999|gb|AAB87573.1| chlorophyll a/b binding protein of LHCII type I precursor [Panax
ginseng]
Length = 266
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
Score = 40.4 bits (93), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
G +++P + GS FDPLGL +DP + EL +GR AM ++ G FV +G
Sbjct: 183 GEVVDPLYPGGS------FDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 236
Query: 120 IPWFEAGADP 129
E ADP
Sbjct: 237 KGPLENLADP 246
>gi|168018669|ref|XP_001761868.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168018837|ref|XP_001761952.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686923|gb|EDQ73309.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687007|gb|EDQ73393.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 180 -----GGPLGEVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|12324161|gb|AAG52048.1|AC022455_2 chlorophyll A-B-binding protein 2 precursor, 5' partial; 1-750
[Arabidopsis thaliana]
Length = 249
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 48 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 107
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 108 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR--------- 158
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
V P AE+ YPGG FDPL LA D E LKV E+
Sbjct: 159 --VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEL 198
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 199 KNGRLAMFSMFGFFVQAIVTGKGPIENL 226
>gi|693914|gb|AAA80589.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 106/252 (42%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|219879136|gb|ACL50948.1| putative chloroplast chlorophyll a/b binding protein [Solanum
nigrum]
Length = 249
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 106/252 (42%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 7 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 64
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 65 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 124
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 125 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 172
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 173 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 214
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 215 AIVTGKGPLENL 226
>gi|225463432|ref|XP_002275075.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
Length = 264
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|226530077|ref|NP_001149586.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|194706946|gb|ACF87557.1| unknown [Zea mays]
gi|195628244|gb|ACG35952.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|413926425|gb|AFW66357.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 249
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV G+ V +A W
Sbjct: 59 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGVLVPEALGLGNWV 118
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 119 KAQEWAAVPGGQATYLGAPVPWGTLPTILAVEFVAIAFAEHQRTME-KDPEKKK------ 171
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D KL+ K+ EIK+ RLAM+
Sbjct: 172 ----------------YPGGA-FDPLGFSR---------DPAKLEEYKLKEIKNGRLAML 205
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 206 AFVGFCVQ 213
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG +DPA L+ Y+ E+ +GR AM A VG V Q+
Sbjct: 177 FDPLGFSRDPAKLEEYKLKEIKNGRLAMLAFVGFCVQQS 215
>gi|168043963|ref|XP_001774452.1| predicted protein [Physcomitrella patens subsp. patens]
gi|4757371|dbj|BAA77273.1| chlorophyll a/b-binding protein precursor [Physcomitrella patens]
gi|162674164|gb|EDQ60676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 268
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 127
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 128 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 181 -----GGPLGDVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 217
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|326497177|dbj|BAK02173.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 80.1 bits (196), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 79/248 (31%), Positives = 102/248 (41%), Gaps = 54/248 (21%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFDPLGL 83
L G RVT K + L W A + G + P +L G PGDYG+D GL
Sbjct: 26 LFGEARVTMRKTAAKAKQLSSSNPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGL 85
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA--------- 127
DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 86 SADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 128 ---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
+P + S ++ Q++LMG VE R P +
Sbjct: 146 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------------GGPLGEIVDPL---- 189
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +A
Sbjct: 190 ----YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 244 GKTPLGAL 251
GK PL L
Sbjct: 236 GKGPLENL 243
>gi|607148|emb|CAA57407.1| light harvesting chlorophyll a /b-binding protein Lhcb1*1 [Picea
abies]
Length = 278
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P I S ++L Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLIHAQSILAILACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL A D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|297851414|ref|XP_002893588.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
gi|297339430|gb|EFH69847.1| hypothetical protein ARALYDRAFT_473203 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 122 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 171
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 172 -VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPIENL 239
>gi|168068372|ref|XP_001786046.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662227|gb|EDQ49143.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 270
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 97/212 (45%), Gaps = 46/212 (21%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P ++ ++P + I P +L G +PGDYG+DP GL K P Y+ ELIH RWAM
Sbjct: 51 PDRRIYLPEGLLAKDEI-PAYLTGEVPGDYGYDPFGLSKKPEDFDRYQAYELIHARWAML 109
Query: 107 AVVGIFVGQAWSGI--------PWFEAGA-----DP----GAIAPFSFGSLLGTQLLLMG 149
G + +A++ W++ GA D GA P + + + +++L+G
Sbjct: 110 GAAGFVLPEAFNKFGAVCGPEAVWWKTGALLLEGDSIKYFGATVPINLAAAVIAEVILVG 169
Query: 150 WVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVY 209
E R S + + ++ +PGG FDPL LA
Sbjct: 170 GAEYYR------------------STNKDVYGLQDLDRLHPGGA-FDPLGLA-------- 202
Query: 210 IPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
D ++ LKV EIK+ RLAM +ML F+ +A
Sbjct: 203 -KDPDQFALLKVKEIKNGRLAMFSMLGFFVQA 233
>gi|225463428|ref|XP_002274942.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 1 [Vitis vinifera]
gi|359483839|ref|XP_003633024.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic
isoform 2 [Vitis vinifera]
gi|147776663|emb|CAN67709.1| hypothetical protein VITISV_003096 [Vitis vinifera]
Length = 264
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|167997305|ref|XP_001751359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697340|gb|EDQ83676.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA PDT LKV EIK
Sbjct: 180 ----GGPLGEVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|47169444|pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 91
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>gi|3036949|dbj|BAA25393.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 266
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 179 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|115800|sp|P09756.1|CB23_SOYBN RecName: Full=Chlorophyll a-b binding protein 3, chloroplastic;
AltName: Full=LHCII type I CAB-3; Short=LHCP; Flags:
Precursor
gi|18552|emb|CAA31419.1| chlorophyll a/b binding preprotein (AA - 32 to 231) [Glycine max]
Length = 263
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|224927|prf||1204205B protein 1B,chlorophyll binding
Length = 265
Score = 80.1 bits (196), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 106/252 (42%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSQ 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|115819|sp|P07370.1|CB2B_SOLLC RecName: Full=Chlorophyll a-b binding protein 1B, chloroplastic;
AltName: Full=LHCII type I CAB-1B; Short=LHCP; Flags:
Precursor
gi|170402|gb|AAA34147.1| chlorophyll a/b-binding protein Cab-1B [Solanum lycopersicum]
Length = 265
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 106/252 (42%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|2196770|gb|AAB61236.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG +E R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVTDPL--------YPGGSF-DPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|283549609|emb|CAX64458.1| major chlorophyll a/b binding protein LHCb1.4 precursor [Spinacia
oleracea]
Length = 267
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|375152222|gb|AFA36569.1| putative chlorophyll a/b-binding protein, partial [Lolium perenne]
Length = 206
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 72/216 (33%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
PE LDG PGDYGFD GLG+DP Y E++H RWAM +G+
Sbjct: 3 PEHLDGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLGALGVVVPELLDLFGIVH 62
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP G I + Q LLM E R+
Sbjct: 63 FVEPVWWKVGYAKLQGDTLDYLGIPGLRIAGGQGIIV------IAICQALLMVGPEYARY 116
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ D
Sbjct: 117 C--------GIEALEPLG------IYLPGDLNYPGGALFDPLGLS---------KDPVAF 153
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 154 EELKVKEIKNGRLAMVAWLGFYVQAAVTGKGPVQNL 189
>gi|297845914|ref|XP_002890838.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
gi|297336680|gb|EFH67097.1| hypothetical protein ARALYDRAFT_473204 [Arabidopsis lyrata subsp.
lyrata]
Length = 262
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 122 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 171
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV E+K
Sbjct: 172 -VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPIENL 239
>gi|115832|sp|P20866.1|CB2_PHYPA RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169020|gb|AAA33636.1| major chlorophyll binding protein [Physcomitrella patens]
Length = 269
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 68 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 127
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 128 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D + LKV EI
Sbjct: 181 -----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDTFAELKVKEI 217
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 218 KNGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|359806638|ref|NP_001241277.1| uncharacterized protein LOC100805310 [Glycine max]
gi|255647962|gb|ACU24438.1| unknown [Glycine max]
Length = 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|115780|sp|P12333.1|CB2A_SPIOL RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|14240|emb|CAA32526.1| chlorophyll a/b binding protein precursor [Spinacia oleracea]
gi|193783447|emb|CAJ77389.3| major chlorophyll a/b binding protein LHCb1.3 [Spinacia oleracea]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|359480215|ref|XP_002273106.2| PREDICTED: chlorophyll a-b binding protein 1B, chloroplastic-like
[Vitis vinifera]
Length = 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +PG + S ++ Q++LMG VE R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPGLVHAQSILAIWACQVILMGAVEGYRI--------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 175 ---GGGPLGEVIDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|147857734|emb|CAN78667.1| hypothetical protein VITISV_031287 [Vitis vinifera]
Length = 264
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 124
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|38096045|gb|AAR10886.1| chlorophyll a/b binding protein [Trifolium pratense]
Length = 266
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|3293555|gb|AAC25775.1| chlorophyll a/b binding protein [Medicago sativa]
Length = 266
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|388503990|gb|AFK40061.1| unknown [Medicago truncatula]
Length = 266
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|255567270|ref|XP_002524616.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223536169|gb|EEF37824.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ +Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|133917263|emb|CAJ77391.1| major chlorophyll a/b binding protein LHCb1.1 [Spinacia oleracea]
gi|283549607|emb|CAX64457.1| major chlorophyll a/b binding protein LHCb1.1 precursor [Spinacia
oleracea]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|133917261|emb|CAJ77390.1| major chlorophyll a/b binding protein LHCb1.2 [Spinacia oleracea]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|115825|sp|P07369.1|CB2G_SOLLC RecName: Full=Chlorophyll a-b binding protein 3C, chloroplastic;
AltName: Full=LHCII type I CAB-3C; Short=LHCP; Flags:
Precursor
gi|224932|prf||1204205G protein 3C,chlorophyll binding
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|3036955|dbj|BAA25396.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|115805|sp|P27495.1|CB24_TOBAC RecName: Full=Chlorophyll a-b binding protein 40, chloroplastic;
AltName: Full=LHCII type I CAB-40; Short=LHCP; Flags:
Precursor
gi|19829|emb|CAA36958.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|225461832|ref|XP_002285646.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic [Vitis
vinifera]
gi|147833686|emb|CAN73057.1| hypothetical protein VITISV_007597 [Vitis vinifera]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRI--------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 179 ---GGGPLGEVVDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|110224742|emb|CAL07971.1| chlorophyll a/b-binding protein, photosystem II [Platanus x
acerifolia]
Length = 235
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 39 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 98
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ++LMG VE R
Sbjct: 99 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 148
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
TG YPGG F DPL LA D E LKV EIK
Sbjct: 149 ---------VAGGPLGKVTGPL-YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 188
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 189 NGRLAMFSMFGFFVQAIVTGKGPLENL 215
>gi|218172|dbj|BAA00536.1| type I light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
gi|227611|prf||1707316A chlorophyll a/b binding protein 1
Length = 265
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R P +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V + YPGG FDPL LA D E LKV EIK
Sbjct: 184 VV------------------DPLYPGGA-FDPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
RLAM +M F+ +A GK PL L
Sbjct: 216 KGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|125605083|gb|EAZ44119.1| hypothetical protein OsJ_28744 [Oryza sativa Japonica Group]
Length = 245
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 87/216 (40%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
P L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 42 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 101
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G I + Q LLM E R+
Sbjct: 102 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIV------IAICQALLMVGPEYARY 155
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL G KD V D
Sbjct: 156 C--------GIEALEPLGLY------LPGDINYPGGALFDPL---GLSKDPVAFED---- 194
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 195 --LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNL 228
>gi|168007695|ref|XP_001756543.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692139|gb|EDQ78497.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 225
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 88/207 (42%), Gaps = 51/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--- 121
PE+L G PGDYG D L + PA R EL++GRWAM + G + +
Sbjct: 44 PEYLKGEYPGDYGCDIFKLARLPANYARLRTQELMNGRWAMLGITGCLTPELINSNSTPG 103
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF GA PG I S +++ Q LLMG E R F PE
Sbjct: 104 FEPVWFNTGAQIFSDAGIDYLGVPGFINAHSLFAVIVVQALLMGLAEYARIK--FVPEG- 160
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
A P+ YPGGK FDPL + D E L LKV EIK
Sbjct: 161 ----ADPF---------------YPGGKTFDPLGFSS---------DPEILAELKVKEIK 192
Query: 226 HARLAMVAML-IFYFEAGQGKTPLGAL 251
+ RLAM+AM +F A G +PL L
Sbjct: 193 NGRLAMMAMAGLFAQGAVTGVSPLQNL 219
>gi|145354756|ref|XP_001421643.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
gi|144581881|gb|ABO99936.1| possibly CP29, chlorophyll a/b binding [Ostreococcus lucimarinus
CCE9901]
Length = 260
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 98/234 (41%), Gaps = 83/234 (35%)
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------------------ 92
+ P WLDGSLPGD GFDP L K ++++
Sbjct: 53 VRPAWLDGSLPGDRGFDPFNLSKPIEYVQFDLDALDGSAATNPAGRVIGKLKKTDNKPKA 112
Query: 93 --------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG----ADPG---- 130
+RE EL+H RWAM +VG +A +GI W +AG P
Sbjct: 113 RAIVPYDESFDIMRFRECELLHSRWAMLGLVGATAAEAATGISWADAGKVELEQPQYLGF 172
Query: 131 AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYP 190
+ S SL ++L MG++E +R+AE N ++ YP
Sbjct: 173 PLPGLSVASLTAIEVLAMGYLEV--------------------ARSAELDQN---KRMYP 209
Query: 191 GGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAGQG 244
GG FDPL G + + D E+ RLK AE+KH RLAMV MLI EA G
Sbjct: 210 GGA-FDPL---GYVANA----DAEEEFRLKTAELKHGRLAMVGMLIISIEAAAG 255
>gi|3928140|emb|CAA10284.1| chlorophyll a/b binding protein [Cicer arietinum]
Length = 266
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|16374|emb|CAA27542.1| chlorophyll a/b binding protein (LHCP AB 180) [Arabidopsis
thaliana]
Length = 233
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 94/208 (45%), Gaps = 49/208 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVK 91
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR--------- 142
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
V P AE+ YPGG FDPL LA D E LKV E+
Sbjct: 143 --VAGNGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEL 182
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 183 KNGRLAMFSMFGFFVQAIVTGKGPIENL 210
>gi|3036948|dbj|BAA25392.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|357157014|ref|XP_003577654.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
[Brachypodium distachyon]
Length = 286
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/183 (36%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A + F
Sbjct: 88 PEYLNGEVPGDYGYDPFGLSKKPDDFTKYQAYELIHARWAMLGAAGFIIPEACNK---FG 144
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + +V AE +
Sbjct: 145 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLI-------LAVVAEVVLVGGAEYYRI 196
Query: 183 ATG----EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
G ++ +PGG FDPL LA PD L LKV EIK+ RLAM +ML F+
Sbjct: 197 INGLDLEDKLHPGGP-FDPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLGFF 246
Query: 239 FEA 241
+A
Sbjct: 247 IQA 249
>gi|226358409|gb|ACO51067.1| chloroplast chlorophyll A-B binding protein [Gossypium hirsutum]
Length = 264
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|9587205|gb|AAF89206.1|AF279249_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWATQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM ++ F+ +A GK PL L
Sbjct: 215 NGRLAMFSIFGFFVQAIVTGKGPLENL 241
>gi|168045248|ref|XP_001775090.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168045296|ref|XP_001775114.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673541|gb|EDQ60062.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673565|gb|EDQ60086.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 64 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVKF 123
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 124 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA PDT LKV EIK
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEIK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|168044688|ref|XP_001774812.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529316|dbj|BAD08519.1| light-harvesting chlorophyll a/b-binding protein 2 [Physcomitrella
patens subsp. patens]
gi|162673836|gb|EDQ60353.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 68 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA PDT LKV EIK
Sbjct: 180 ----GGPLGEVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|693916|gb|AAA80591.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 103/252 (40%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA----- 127
GL DP RE E+IH RWAM +G G + WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLA---------EDPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|242060664|ref|XP_002451621.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
gi|241931452|gb|EES04597.1| hypothetical protein SORBIDRAFT_04g004770 [Sorghum bicolor]
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV GI V +A W
Sbjct: 55 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + S ++L + + + + E +R ++ +PE
Sbjct: 115 KAQEWAAVPGGQATYLGNPVPWGSLPTILVIEFVAIAFAEHQRTME-KDPE--------- 164
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL + D K + K+ EIK+ RLAM+
Sbjct: 165 -------------KKKYPGGA-FDPLGFSK---------DPAKFEEYKLKEIKNGRLAML 201
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 202 AFVGFCVQQSAYPGTGPLENL 222
>gi|115779|sp|P12471.1|CB21_SOYBN RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|169933|gb|AAA33949.1| chlorophyll a/b-binding protein precursor, partial [Glycine max]
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI-- 120
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 105
Query: 121 ---PWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ + I S ++ TQ++LMG VE R
Sbjct: 106 GEASWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA-------- 157
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 158 ----GGPLGEVTDPI--------YPGGS-FDPLALAD---------DPEAFAELKVKEIK 195
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 196 NGRLAMFSMFGFFVQAIVTGKGPLENL 222
>gi|693920|gb|AAA80593.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 105/252 (41%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + + G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 STSEITGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVIDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 189 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|449461699|ref|XP_004148579.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
gi|449518125|ref|XP_004166094.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLKGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ +Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPEAFSELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|115820|sp|P15194.1|CB2B_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1B,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1B; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20665|emb|CAA32658.1| unnamed protein product [Pinus sylvestris]
Length = 274
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 187 ----GGPLGEVTDPI--------YPGGSF-DPLGLA---------EDPEAFAELKVKEIK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|116785761|gb|ABK23849.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++L Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL A D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|109389998|gb|ABG29728.1| chloroplast chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 93/207 (44%), Gaps = 49/207 (23%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE ++IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFARNRELQVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYR---------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V P AE+ YPGG FDPL LA D E LKV EIK
Sbjct: 177 -VAGDGPLGE-AEDLL-------YPGGS-FDPLGLA---------TDPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFAQAIVTGKGPLENL 244
>gi|225459918|ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
[Vitis vinifera]
gi|147770824|emb|CAN76428.1| hypothetical protein VITISV_023565 [Vitis vinifera]
gi|297734735|emb|CBI16969.3| unnamed protein product [Vitis vinifera]
Length = 290
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 87/194 (44%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P +L G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 92 PAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNKFGANC 151
Query: 121 ----PWFEAGADP---------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA G P + + +++L+G E R ++ + E
Sbjct: 152 GPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVGGAEYYRIINGLDLE---- 207
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D ++ LKV EIK+
Sbjct: 208 ------------------DKLHPGGP-FDPLGLAN---------DPDQAALLKVKEIKNG 239
Query: 228 RLAMVAMLIFYFEA 241
RLAM AML F+ +A
Sbjct: 240 RLAMFAMLGFFIQA 253
>gi|449525738|ref|XP_004169873.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 88/216 (40%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA-------- 116
P++L G LPGDYGFD GL +DP + + E++H RWAM A +G V +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFH 189
Query: 117 --------------------WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
+ GIP G I + Q +LM E R+
Sbjct: 190 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIV------IAICQAILMVGPEYARY 243
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ D E
Sbjct: 244 C--------GIEALEPLG------IYLPGDINYPGGVLFDPLNLSK---------DAEAF 280
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 281 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNL 316
>gi|255087238|ref|XP_002505542.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
gi|226520812|gb|ACO66800.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas sp. RCC299]
Length = 308
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 99/200 (49%), Gaps = 20/200 (10%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P ++ ++PA N P +LDGSL GDYGFDPL LGKD ++ YR AE+IH RWAM
Sbjct: 87 PNRRLYLPAGLLDINTDVPSYLDGSLAGDYGFDPLQLGKD-GKVEQYRAAEVIHARWAML 145
Query: 107 AVVGIFVGQAWSGIP---WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
A+ GI + +A GIP W E G F G ++L ++ + + F
Sbjct: 146 AIPGIVIPEAL-GIPGGVWTETG------KVFLDGEAGRPEILQNPYLFAAIQIGLF--- 195
Query: 164 SQSVE-WATPWSRTAENFANATGEQGYPGGKF--FDPLCLAGTIKDGVYIPDTEKLDRLK 220
+VE + + + F G+ + G F DP+ G + + L LK
Sbjct: 196 -AAVEGYRAGKAPAPDGFVPFKGK--FSGSDFSGLDPINPGGPLDFFNVAATPDDLAVLK 252
Query: 221 VAEIKHARLAMVAMLIFYFE 240
V EIK+ RLAM+AML + +
Sbjct: 253 VKEIKNGRLAMIAMLGVFVQ 272
>gi|115781|sp|P27492.1|CB21_TOBAC RecName: Full=Chlorophyll a-b binding protein 16, chloroplastic;
AltName: Full=LHCII type I CAB-16; Short=LHCP; Flags:
Precursor
gi|19819|emb|CAA36955.1| unnamed protein product [Nicotiana tabacum]
Length = 266
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 179 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|116791684|gb|ABK26071.1| unknown [Picea sitchensis]
gi|148908641|gb|ABR17429.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++L Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL A D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|116781997|gb|ABK22330.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++L Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL A D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|374412428|gb|AEZ49172.1| chlorophyll a/b binding protein of LHCII type I [Wolffia
australiana]
Length = 264
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCIFPELLSKNGVK 123
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P I S ++ TQ++LMG++E R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFIEGYR--------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 175 ---VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEI 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|317454924|gb|ADV19258.1| chlorophyll a/b-binding protein-like protein [Helleborus
orientalis]
Length = 232
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 33 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLSRNGVKF 92
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ TQ++LMG VE R
Sbjct: 93 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 144
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 145 ----GGPLGEVEDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 182
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ A GK PL L
Sbjct: 183 NGRLAMFSMFGFFVXAIVTGKGPLENL 209
>gi|3036951|dbj|BAA25394.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|255646685|gb|ACU23816.1| unknown [Glycine max]
Length = 263
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|115438250|ref|NP_001043493.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|82654918|sp|P12331.2|CB22_ORYSJ RecName: Full=Chlorophyll a-b binding protein 2, chloroplastic;
AltName: Full=LHCII type I CAB-2; Short=LHCP; Flags:
Precursor
gi|53793541|dbj|BAD52990.1| putative a/b-binding protein precursor [Oryza sativa Japonica
Group]
gi|113533024|dbj|BAF05407.1| Os01g0600900 [Oryza sativa Japonica Group]
gi|125526713|gb|EAY74827.1| hypothetical protein OsI_02717 [Oryza sativa Indica Group]
gi|125605334|gb|EAZ44370.1| hypothetical protein OsJ_28992 [Oryza sativa Japonica Group]
gi|215767332|dbj|BAG99560.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768322|dbj|BAH00551.1| unnamed protein product [Oryza sativa Japonica Group]
gi|385718790|gb|AFI71822.1| chlorophyll a/b-binding protein [Oryza sativa]
Length = 261
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 121
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 122 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 173
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 174 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 211
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKGPLENL 238
>gi|115792|sp|P27493.1|CB22_TOBAC RecName: Full=Chlorophyll a-b binding protein 21, chloroplastic;
AltName: Full=LHCII type I CAB-21; Short=LHCP; Flags:
Precursor
gi|19823|emb|CAA36957.1| unnamed protein product [Nicotiana tabacum]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 178 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|168009155|ref|XP_001757271.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691394|gb|EDQ77756.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 65 TPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVVLMGAVEGYRVA------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 178 -----GGPLGEITDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|115478691|ref|NP_001062939.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|82654917|sp|P12330.2|CB21_ORYSJ RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|50252362|dbj|BAD28469.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|50252884|dbj|BAD29115.1| putative chlorophyll a-b binding protein, chloroplast precursor
(LHCII type I CAB) (LHCP) [Oryza sativa Japonica Group]
gi|113631172|dbj|BAF24853.1| Os09g0346500 [Oryza sativa Japonica Group]
gi|215737437|dbj|BAG96567.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737443|dbj|BAG96573.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737483|dbj|BAG96613.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765877|dbj|BAG87574.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218201978|gb|EEC84405.1| hypothetical protein OsI_30987 [Oryza sativa Indica Group]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/207 (34%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R P +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V + YPGG FDPL LA D E LKV EIK
Sbjct: 184 VV------------------DPLYPGGA-FDPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|2196774|gb|AAB61238.1| chlorophyll a/b-binding protein [Mesembryanthemum crystallinum]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG +E R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAIEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVIDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|168003066|ref|XP_001754234.1| predicted protein [Physcomitrella patens subsp. patens]
gi|41529314|dbj|BAD08518.1| light-harvesting chlorophyll a/b-binding protein 1 [Physcomitrella
patens subsp. patens]
gi|162694788|gb|EDQ81135.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 180 -----GGPLGDVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|303288868|ref|XP_003063722.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
gi|226454790|gb|EEH52095.1| lycopene beta cyclase [Micromonas pusilla CCMP1545]
Length = 1523
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 86/197 (43%), Gaps = 32/197 (16%)
Query: 59 GGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 118
G + + P +L G LPGD G+DPL +G K RE ELIHGRWAM A VG+ + +
Sbjct: 1333 GPSTVVPAYLTGELPGDVGWDPLQMGAQRDLTK-LRERELIHGRWAMLAAVGVLTPELTA 1391
Query: 119 GIPWFEAGADPG------AIAPFSFGSLLGTQLLLMG--------WVESKRWVDFFNPES 164
+ F A PG AI + G L G +L +G W+ FF
Sbjct: 1392 KLGVFGA---PGSHWWNTAINFPTEGGLAGAELTYLGETIPFGLFWLPIIHLPVFF---- 1444
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
E E F ++ YPGG FDPL + I D +L LK EI
Sbjct: 1445 -VAEMLRTGKYEVERFRGL--DRMYPGGSLFDPLGIGRDI-------DETELKVLKTIEI 1494
Query: 225 KHARLAMVAMLIFYFEA 241
H RLAM A F EA
Sbjct: 1495 NHCRLAMTASFGFIVEA 1511
>gi|225690794|gb|ACO06083.1| chlorophyll a-b binding protein [Triticum aestivum]
Length = 252
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 86/188 (45%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV---------- 113
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM V G+ V
Sbjct: 56 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWV 115
Query: 114 -GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
Q W+ +P +A + + ++L + L + + E +R ++ +PE +
Sbjct: 116 KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKK------ 168
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D K + LK+ EIK+ RLAM+
Sbjct: 169 ----------------YPGGA-FDPLGFSK---------DPAKFEELKLKEIKNGRLAML 202
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 203 AFVGFCVQ 210
Score = 38.9 bits (89), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA + + E+ +GR AM A VG V Q+
Sbjct: 174 FDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQS 212
>gi|255557387|ref|XP_002519724.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223541141|gb|EEF42697.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|413968348|gb|AFW90512.1| chlorophyll a/b-binding protein [Phaseolus vulgaris]
Length = 263
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|346987809|gb|AEO51755.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 263
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 111/269 (41%), Gaps = 66/269 (24%)
Query: 13 LGSSFINGGKKSQAL-----LAGTNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNL 62
L SSFI GK Q L G RVT K V++ P + ++ G
Sbjct: 8 LSSSFI--GKAVQLAPTGNDLMGNGRVTMRKTGRQVSSGSPWYGPDRVKYLGPFSGE--- 62
Query: 63 INPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGI 120
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 63 -PPSYLTGEFPGDYGWDAAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGV 121
Query: 121 P-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPE 163
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 122 KFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA------ 175
Query: 164 SQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAE 223
P + + YPGG F DPL LA D E LKV E
Sbjct: 176 ------GGPLGKVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKE 211
Query: 224 IKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
IK+ R AM +M F+ +A GK PL L
Sbjct: 212 IKNGRSAMFSMFGFFVQAIVTGKGPLENL 240
>gi|187609488|gb|ACD13267.1| chlorophyll a/b binding protein precursor [Phyllostachys
fimbriligula]
Length = 204
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 95/201 (47%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGLG P + ++E+E+ H RWAM V G+ V +A W
Sbjct: 24 RPAHLDGSSPGDFGFDPLGLGTVPENFERFKESEVYHCRWAMLCVPGVLVPEALGLGNWV 83
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 84 KAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFVAIAFAEHQRTME-KDPEKKK------ 136
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL G KD V K + K+ EIK+ RLAM+
Sbjct: 137 ----------------YPGGA-FDPL---GFSKDPV------KFEEYKLKEIKNGRLAML 170
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 171 AFVGFCVQQSAYPGTGPLENL 191
>gi|1657859|gb|AAB18209.1| chlorophyll a/b-binding protein WCAB precursor [Triticum aestivum]
Length = 266
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|75265661|sp|Q9SDM1.1|CB121_HORVU RecName: Full=Chlorophyll a-b binding protein 1B-21, chloroplastic;
AltName: Full=LHCI type I CAB-1B-21; AltName:
Full=LHCI-730 chlorophyll a/b binding protein; AltName:
Full=Light-harvesting complex I 21 kDa protein; Flags:
Precursor
gi|6685157|gb|AAF23819.1|AF218305_2 chlorophyll a/b binding protein precursor [Hordeum vulgare]
Length = 245
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 91/201 (45%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV---------- 113
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM V G+ V
Sbjct: 54 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEALGLGNWV 113
Query: 114 -GQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
Q W+ +P +A + + ++L + L + + E +R ++ +PE +
Sbjct: 114 KAQEWAALPDGQATYLGNPVPWGNLPTILAIEFLAIAFAEQQRTME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D K + LK+ EIK+ RLAM+
Sbjct: 167 ----------------YPGGA-FDPLGFSK---------DPAKFEELKLKEIKNGRLAML 200
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 201 AFVGFCVQQSAYPGTGPLENL 221
>gi|116784226|gb|ABK23263.1| unknown [Picea sitchensis]
gi|116792001|gb|ABK26194.1| unknown [Picea sitchensis]
gi|224285000|gb|ACN40229.1| unknown [Picea sitchensis]
gi|224285305|gb|ACN40377.1| unknown [Picea sitchensis]
Length = 278
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IHGRWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++L Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAILACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL A D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGWA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|3036946|dbj|BAA25391.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|168003213|ref|XP_001754307.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694409|gb|EDQ80757.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 67 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKSGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 180 -----GGPLGDVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|326499874|dbj|BAJ90772.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 104/252 (41%), Gaps = 54/252 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFD 79
S + L G RVT K + + W A + G + P +L G PGDYG+D
Sbjct: 22 SLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 81
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 82 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 141
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEIVDPL 189
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 190 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 232 AIVTGKGPLENL 243
>gi|115812|sp|P27491.1|CB27_TOBAC RecName: Full=Chlorophyll a-b binding protein 7, chloroplastic;
AltName: Full=LHCII type I CAB-7; Short=LHCP; Flags:
Precursor
gi|19837|emb|CAA41187.1| chlorophyll a /b binding protein [Nicotiana tabacum]
Length = 267
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLDNL 244
>gi|53627222|gb|AAU89262.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus remota]
Length = 256
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 105/246 (42%), Gaps = 59/246 (23%)
Query: 31 TNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
T R +++KKSV A+ P + ++ G P +L G PGDYG+D GL
Sbjct: 37 TMRKSATKKSVASASPSPWYGPDRVLYLGPFSGE----PPSYLTGEFPGDYGWDTAGLSA 92
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----------- 127
DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 93 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 152
Query: 128 -DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+P I S ++ Q++LMG VE R P +
Sbjct: 153 GNPSLIHAQSILAIWACQVILMGAVEGYRIA------------GGPLGEVTDPI------ 194
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGK 245
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A GK
Sbjct: 195 --YPGGSF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 246 TPLGAL 251
P+ L
Sbjct: 243 GPIENL 248
>gi|302789319|ref|XP_002976428.1| light-harvesting complex [Selaginella moellendorffii]
gi|300156058|gb|EFJ22688.1| light-harvesting complex [Selaginella moellendorffii]
Length = 320
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 84/199 (42%), Gaps = 45/199 (22%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI--------FVGQA 116
P+ L GS PGDYGFD GLGKDPA + E++H RWAM A +G+ F G
Sbjct: 116 PDHLQGSFPGDYGFDIAGLGKDPAKFDKFFNFEILHARWAMLAALGVVIPEVLEKFFGVN 175
Query: 117 WSGIPWFEAGADPGAIAPFSFGSLLG--------------TQLLLMGWVESKRWVDFFNP 162
++ W+ G + + G Q LLM E R+
Sbjct: 176 FAESVWWRVGYAKLEGDTLDYLGIPGLHIVGAQGIIVIAICQFLLMVGPEYARYC----- 230
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+E P G+ YPGG FDPL L+ D + LKV
Sbjct: 231 ---GIEALEPLG------IYLPGDINYPGGVLFDPLGLS---------KDPATFEELKVK 272
Query: 223 EIKHARLAMVAMLIFYFEA 241
EIK+ RLAMVA L FY +A
Sbjct: 273 EIKNGRLAMVAWLGFYVQA 291
>gi|413935742|gb|AFW70293.1| LOW QUALITY PROTEIN: hypothetical protein ZEAMMB73_802965, partial
[Zea mays]
Length = 273
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 89/188 (47%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV GI V +A W
Sbjct: 55 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + + + + E +R ++ +PE
Sbjct: 115 KAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPE--------- 164
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
++ YPGG FDPL + D K + K+ EIK+ RLAM+
Sbjct: 165 -------------KKKYPGGA-FDPLGFSK---------DPAKFEEYKLKEIKNGRLAML 201
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 202 AFVGFCVQ 209
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA + Y+ E+ +GR AM A VG V Q+
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQS 211
>gi|693918|gb|AAA80592.1| chlorophyll a/b binding protein [Solanum tuberosum]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 81/257 (31%), Positives = 106/257 (41%), Gaps = 66/257 (25%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + + G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEITGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFRE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWV-----DFFNPESQSVEWATPWSR 175
+P + S ++ Q++LMG VE R + NP
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVNPL------------ 188
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
YPGG FDPL LA D E LKV EIK+ RLAM +M
Sbjct: 189 -------------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMF 225
Query: 236 IFYFEA-GQGKTPLGAL 251
F+ +A GK PL L
Sbjct: 226 GFFVQAIVTGKGPLENL 242
>gi|109157229|pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK 91
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>gi|7271947|gb|AAF44703.1|AF241525_1 chlorophyll a/b-binding protein type III [Alonsoa meridionalis]
Length = 193
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 93/185 (50%), Gaps = 32/185 (17%)
Query: 74 GDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWS 118
GD+GFDPLGL DP F+ KW E+I+GR+AM VG + A +
Sbjct: 1 GDFGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRFAMLGAVGAIAPEILGKAGLIPAET 59
Query: 119 GIPWFEAGADP--GAIAPFSFG-SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
+PWF+ G P G ++ G +L ++ LMG+ E +R+ D+ P S ++
Sbjct: 60 ALPWFQTGVIPPAGTYNYWADGYTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL---- 115
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
E +G+ YPGG FF+PL D + + LK+ E+K+ RLAM+A+L
Sbjct: 116 GLEKGLGGSGDPAYPGGPFFNPLGFG---------KDEKSMKELKLKEVKNGRLAMLAIL 166
Query: 236 IFYFE 240
++ +
Sbjct: 167 GYFIQ 171
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+
Sbjct: 126 DPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPFQ 181
>gi|357118764|ref|XP_003561119.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357118766|ref|XP_003561120.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357118768|ref|XP_003561121.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
Length = 266
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|242053513|ref|XP_002455902.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
gi|241927877|gb|EES01022.1| hypothetical protein SORBIDRAFT_03g027040 [Sorghum bicolor]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|9587207|gb|AAF89207.1|AF279250_1 LHCII type I chlorophyll a/b-binding protein [Vigna radiata]
Length = 264
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGSVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ +Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|3036953|dbj|BAA25395.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG +E R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAIEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|53627220|gb|AAU89261.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monophylla]
Length = 256
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 78/246 (31%), Positives = 105/246 (42%), Gaps = 59/246 (23%)
Query: 31 TNRVTSSKKSVVVAALPP-----KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGK 85
T R +++KKSV A+ P + ++ G P +L G PGDYG+D GL
Sbjct: 37 TMRKSATKKSVASASPSPWYGPDRVLYLGPFSGE----PPSYLTGEFPGDYGWDTAGLSA 92
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----------- 127
DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 93 DPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYL 152
Query: 128 -DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGE 186
+P I S ++ Q++LMG VE R P +
Sbjct: 153 GNPSLIHAQSILAIWACQVILMGAVEGYRIA------------GGPLGEVTDPI------ 194
Query: 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGK 245
YPGG F DPL LA D + LKV EIK+ RLAM +M F+ +A GK
Sbjct: 195 --YPGGSF-DPLGLAD---------DPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGK 242
Query: 246 TPLGAL 251
P+ L
Sbjct: 243 GPIENL 248
>gi|167997439|ref|XP_001751426.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066892|ref|XP_001785364.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066898|ref|XP_001785367.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663036|gb|EDQ49825.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663039|gb|EDQ49828.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697407|gb|EDQ83743.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G GDYG+D GL DP RE E+IH RWAM +G + A SG+
Sbjct: 67 TPSYLTGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCLTPELLAKSGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D + LKV EI
Sbjct: 180 -----GGPLGEVTDPI--------YPGGSF-DPLGLA---------DDPDTFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|302754140|ref|XP_002960494.1| light-harvesting complex [Selaginella moellendorffii]
gi|300171433|gb|EFJ38033.1| light-harvesting complex [Selaginella moellendorffii]
Length = 272
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + S GI
Sbjct: 72 SPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIK 131
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ +Q++LMG VE R
Sbjct: 132 FGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIA------- 184
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 185 -----GGPLGEVTDPI--------YPGGSF-DPLGLA---------EDPEAFAELKVKEL 221
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 222 KNGRLAMFSMFGFFVQAIVTGKGPLENL 249
>gi|302767620|ref|XP_002967230.1| light-harvesting complex [Selaginella moellendorffii]
gi|300165221|gb|EFJ31829.1| light-harvesting complex [Selaginella moellendorffii]
Length = 263
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + S GI
Sbjct: 63 SPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSKNGIK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ +Q++LMG VE R
Sbjct: 123 FGEAVWFKAGSQIFKEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRIA------- 175
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 176 -----GGPLGEVTDPI--------YPGGSF-DPLGLA---------EDPEAFAELKVKEL 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|115804|sp|P04782.1|CB24_PETSP RecName: Full=Chlorophyll a-b binding protein 25, chloroplastic;
AltName: Full=LHCII type I CAB-25; Short=LHCP; Flags:
Precursor
gi|20483|emb|CAA26211.1| unnamed protein product [Petunia sp.]
Length = 266
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEVIDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|77157635|dbj|BAE46383.1| chlorophyll a/b binding protein [Panax ginseng]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILARNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV E+
Sbjct: 183 EGLD------------------KIYPGGSF-DPLGLAD---------DPEAFAELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 37.4 bits (85), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + EL +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 229
>gi|81074613|gb|ABB55370.1| chlorophyll a-b binding protein 3C-like [Solanum tuberosum]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|359754911|gb|AEV59645.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis lambertii]
Length = 237
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 97
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 98 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 149
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 150 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 187
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 188 NGRLAMFSMFGFFVQAIVTGKGPLENL 214
>gi|168006129|ref|XP_001755762.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162693081|gb|EDQ79435.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWASQVILMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA PDT LKV EIK
Sbjct: 178 ----GGPLGDVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|115795|sp|P12469.1|CB23_NICPL RecName: Full=Chlorophyll a-b binding protein C, chloroplastic;
AltName: Full=LHCII type I CAB-C; Short=LHCP; Flags:
Precursor
gi|170210|gb|AAA34055.1| chlorophyll a/b-binding protein-C [Nicotiana plumbaginifolia]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+ G+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKGGSQIFSQGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 180 -----GEPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|359754901|gb|AEV59640.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis campestris subsp. johannensis]
gi|359754909|gb|AEV59644.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 239
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 151
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 152 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 189
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 190 NGRLAMFSMFGFFVQAIVTGKGPLENL 216
>gi|359754899|gb|AEV59639.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 239
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 151
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 152 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 189
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 190 NGRLAMFSMFGFFVQAIVTGKGPLENL 216
>gi|326498823|dbj|BAK02397.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326508330|dbj|BAJ99432.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 310
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/216 (32%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
PE L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 107 PEHLAGEFPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGIVH 166
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G I + Q+LLM E R+
Sbjct: 167 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGIIV------IAICQVLLMVGPEYARY 220
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
E + G+ YPGG FDPL L+ D
Sbjct: 221 CGIEALEPLGI--------------YLPGDINYPGGALFDPLGLSK---------DPVAF 257
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ KV EIK+ RLAMVA + FY +A GK P+ L
Sbjct: 258 EEFKVKEIKNGRLAMVAWIGFYIQAAVTGKGPVQNL 293
>gi|467794|emb|CAA47950.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 187 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|226503327|ref|NP_001148183.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195612072|gb|ACG27866.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|195616508|gb|ACG30084.1| chlorophyll a-b binding protein 6A [Zea mays]
gi|223975041|gb|ACN31708.1| unknown [Zea mays]
gi|413935743|gb|AFW70294.1| chlorophyll a-b binding protein 6A [Zea mays]
Length = 245
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 88/188 (46%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV GI V +A W
Sbjct: 55 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWV 114
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 115 KAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------ 167
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D K + K+ EIK+ RLAM+
Sbjct: 168 ----------------YPGGA-FDPLGFSK---------DPAKFEEYKLKEIKNGRLAML 201
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 202 AFVGFCVQ 209
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDPA + Y+ E+ +GR AM A VG V Q+
Sbjct: 173 FDPLGFSKDPAKFEEYKLKEIKNGRLAMLAFVGFCVQQS 211
>gi|115798|sp|P04781.1|CB23_PETSP RecName: Full=Chlorophyll a-b binding protein 22R, chloroplastic;
AltName: Full=LHCII type I CAB-22R; Short=LHCP; Flags:
Precursor
gi|20479|emb|CAA26213.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G P DYG+D GL DP RE E+IH RWAM +G + A +GI
Sbjct: 68 PSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVIDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|168053792|ref|XP_001779318.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669234|gb|EDQ55825.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L+G GDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 63 TPSYLNGEFAGDYGWDTAGLSSDPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 175
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA PDT LKV EI
Sbjct: 176 -----GGPLGEVTDPI--------YPGGSF-DPLGLADD-------PDT--FAELKVKEI 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|449459364|ref|XP_004147416.1| PREDICTED: chlorophyll a-b binding protein 40, chloroplastic-like
[Cucumis sativus]
Length = 265
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ +Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWASQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|326523787|dbj|BAJ93064.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|90288037|gb|ABD92879.1| chloroplast chlorophyll a/b binding protein [Pachysandra
terminalis]
Length = 264
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 123
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ Q++LMG++E R
Sbjct: 124 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYR--------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P ++ YPGG F DPL LA D E LKV EI
Sbjct: 175 ---VGGGPLGEGLDSI--------YPGGAF-DPLGLA---------DDPEAFAELKVKEI 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPIENL 241
Score = 37.0 bits (84), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 176 GGGPL--GEGLDSIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 228
>gi|359754903|gb|AEV59641.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 235
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 151
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 152 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 189
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 190 NGRLAMFSMFGFFVQAIVTGKGPLENL 216
>gi|242053511|ref|XP_002455901.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
gi|241927876|gb|EES01021.1| hypothetical protein SORBIDRAFT_03g027030 [Sorghum bicolor]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|357496387|ref|XP_003618482.1| Chlorophyll a/b-binding protein [Medicago truncatula]
gi|355493497|gb|AES74700.1| Chlorophyll a/b-binding protein [Medicago truncatula]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLKNL 242
>gi|359754907|gb|AEV59643.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis splendens]
Length = 236
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 38 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 97
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 98 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 149
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 150 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 187
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 188 NGRLAMFSMFGFFVQAIVTGKGPLENL 214
>gi|115478412|ref|NP_001062801.1| Os09g0296800 [Oryza sativa Japonica Group]
gi|50725078|dbj|BAD33211.1| putative chlorophyll a/b-binding protein [Oryza sativa Japonica
Group]
gi|113631034|dbj|BAF24715.1| Os09g0296800 [Oryza sativa Japonica Group]
Length = 321
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 88/216 (40%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
P L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFGVVH 177
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G I + Q LLM E R+
Sbjct: 178 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIV------IAICQALLMVGPEYARY 231
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ KD V D
Sbjct: 232 C--------GIEALEPLGLY------LPGDINYPGGALFDPLGLS---KDPVAFED---- 270
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 271 --LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNL 304
>gi|242045502|ref|XP_002460622.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
gi|241923999|gb|EER97143.1| hypothetical protein SORBIDRAFT_02g032040 [Sorghum bicolor]
Length = 262
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 122
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 123 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 175 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENL 239
>gi|47168888|pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168889|pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168890|pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168891|pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168892|pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168893|pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168894|pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168895|pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168896|pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
gi|47168897|pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 91
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>gi|125563122|gb|EAZ08502.1| hypothetical protein OsI_30775 [Oryza sativa Indica Group]
Length = 321
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 88/216 (40%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGI------------- 111
P L G PGDYGFD GLG+DP Y E++H RWAM A +G+
Sbjct: 118 PAHLTGEYPGDYGFDIAGLGRDPVAFANYFNFEILHCRWAMLAALGVVVPELLDLFEVVH 177
Query: 112 FVGQAW---------------SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
FV W GIP F G I + Q LLM E R+
Sbjct: 178 FVEPVWWKVGYAKLQGDTLDYLGIPGFRIAGGQGVIV------IAICQALLMVGPEYARY 231
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ KD V D
Sbjct: 232 C--------GIEALEPLGLY------LPGDINYPGGALFDPLGLS---KDPVAFED---- 270
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 271 --LKVKEIKNGRLAMVAWLGFYIQAAVTGKGPIQNL 304
>gi|14041685|emb|CAC38830.1| chlorophyll a/b binding protein [Pinus contorta]
Length = 274
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 187 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|255088738|ref|XP_002506291.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas sp. RCC299]
gi|226521563|gb|ACO67549.1| chlorophyll a/b-binding protein CP29, chloroplast precursor
[Micromonas sp. RCC299]
Length = 271
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 96/239 (40%), Gaps = 83/239 (34%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKW-------------------------------- 92
P +LDG+LPGD GFDP GL +L++
Sbjct: 59 PAYLDGTLPGDAGFDPFGLSAPTEYLQFELDSLNGSAAVNKSGNVIGKLKKVDNKPTERT 118
Query: 93 ------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG----ADPGAIA--- 133
+RE EL H RWAM ++G V + +GI W +AG P +
Sbjct: 119 IVPFNEAFDIVRFRECELQHSRWAMLGLLGAVVAEGQTGISWVDAGKVLNEQPSYLGFDI 178
Query: 134 PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGK 193
+L+ ++L MG+ E KR + + ++ YPGG
Sbjct: 179 NVPVTTLVWIEVLAMGFAEVKRSAEL-----------------------DSNKRCYPGG- 214
Query: 194 FFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
+FDPL A + E L +L+ AE+KH RLAM+ ML +A G +PL A+
Sbjct: 215 YFDPLGFASS-------ASPEALFKLQTAELKHGRLAMIGMLGISIQALKNGLSPLEAI 266
>gi|115811|sp|P12062.1|CB26_PETSP RecName: Full=Chlorophyll a-b binding protein 37, chloroplastic;
AltName: Full=LHCII type I CAB-37; Short=LHCP; Flags:
Precursor
gi|20512|emb|CAA28639.1| chlorophyll a/b binding protein [Petunia x hybrida]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 124
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P I S ++ Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLD------------------KIYPGGAF-DPLGLA---------DDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 36.6 bits (83), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|326496044|dbj|BAJ90643.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326503592|dbj|BAJ86302.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEVK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|303324979|pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 23/161 (14%)
Query: 86 DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGS 139
DP L+W +AEL+H RWAM GIF+ + + + W+ AG +
Sbjct: 2 DPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFT---DTTT 58
Query: 140 LLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199
L +L+ +GW E +RW D NP + + P N + GYPGG +FDPL
Sbjct: 59 LFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPLG 112
Query: 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+KL L+ EIK+ RLAM+A++ +F+
Sbjct: 113 WGSA--------SPQKLKELRTKEIKNGRLAMLAVMGAWFQ 145
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G F
Sbjct: 99 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 158
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 159 AHLADPGHATIFA 171
>gi|357132518|ref|XP_003567877.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357132520|ref|XP_003567878.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357132522|ref|XP_003567879.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357132524|ref|XP_003567880.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357132526|ref|XP_003567881.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 263
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 123
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 176 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|209868191|gb|ACI90635.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus yunnanensis]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 136
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 137 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 188
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 189 ----GGPLGEVTDPI--------YPGGSF-DPLGLA---------DDPDAFAELKVKEIK 226
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 227 NGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|194700378|gb|ACF84273.1| unknown [Zea mays]
gi|195619060|gb|ACG31360.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|303288722|ref|XP_003063649.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
gi|226454717|gb|EEH52022.1| chlorophyll a/b-binding protein CP26, chloroplast precursor
[Micromonas pusilla CCMP1545]
Length = 306
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/187 (37%), Positives = 90/187 (48%), Gaps = 30/187 (16%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP--- 121
P ++DG+L GDYGFDPL LG D + YR AE+IH RWAM A+ GI + +A GIP
Sbjct: 103 PSYMDGTLAGDYGFDPLKLGAD-GKINDYRAAEVIHARWAMLAIPGIVIPEAL-GIPGGV 160
Query: 122 WFEAGA---DPGAIAPFSFGSLL---GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
W E G D A P + + G Q+ L VE R S + A P
Sbjct: 161 WTETGKVFLDGEAGRPEILQNPIIFAGIQIALFAAVEGYR----------SGKVAPP--- 207
Query: 176 TAENFANATGEQGYPGGKF--FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVA 233
E F G+ + G F DP+ G + E L LKV EIK+ RLAM+A
Sbjct: 208 --EGFVPGKGK--FSGSDFAGLDPINPGGPLDFFNVASTPEDLAILKVKEIKNGRLAMIA 263
Query: 234 MLIFYFE 240
ML + +
Sbjct: 264 MLGVFVQ 270
>gi|160713963|gb|ABX47017.1| chloroplast chlorophyll a/b binding protein cab-PhE9 [Phyllostachys
edulis]
Length = 283
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 89/185 (48%), Gaps = 31/185 (16%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K+P Y+ ELIH RWAM G + +A + F
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNK---FG 141
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT----AENF 180
A P A+ F G+LL +E F N ++ A AE +
Sbjct: 142 ANCGPEAVW-FKTGALL---------LEGNTLNYFGNSIPINLAVAVVAEVVLVGGAEYY 191
Query: 181 ANATG----EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLI 236
G ++ +PGG F DPL LA PD L LKV EIK+ RLAM +ML
Sbjct: 192 RIINGLDLEDKLHPGGPF-DPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLG 241
Query: 237 FYFEA 241
F+ +A
Sbjct: 242 FFIQA 246
>gi|31753114|gb|AAH53854.1| Unknown (protein for IMAGE:5194336), partial [Homo sapiens]
gi|111494016|gb|AAI11385.1| Unknown (protein for IMAGE:5198300), partial [Homo sapiens]
Length = 287
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 88 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 147
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 148 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 199
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 200 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 237
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 238 NGRLAMFSMFGFFVQAIVTGKGPLENL 264
>gi|115806|sp|P14279.1|CB25_SOLLC RecName: Full=Chlorophyll a-b binding protein 5, chloroplastic;
AltName: Full=LHCII type I CAB-5; Short=LHCP; Flags:
Precursor
gi|170392|gb|AAA34142.1| chlorophyll a/b-binding protein precursor, partial [Solanum
lycopersicum]
Length = 237
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 91/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 37 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVT 96
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P I S ++ +Q++LMG+VE R P
Sbjct: 97 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 154
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 155 EGLD------------------KIYPGGAF-DPLGLAD---------DPEAFAELKVKEI 186
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 187 KNGRLAMFSMFGFFVQAIVTGKGPIENL 214
>gi|209868183|gb|ACI90631.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus bungeana]
Length = 254
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 136
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 137 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 188
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 189 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 226
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 227 NGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|297306780|dbj|BAJ08392.1| light harvesting chlorophyll a/b-binding protein Lhcb1 [Hordeum
vulgare subsp. vulgare]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|125533937|gb|EAY80485.1| hypothetical protein OsI_35663 [Oryza sativa Indica Group]
Length = 283
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A + F
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNK---FG 141
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + E V A + R
Sbjct: 142 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAE-YYRIINGLD- 198
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
++ +PGG F DPL LA PD L LKV EIK+ RLAM +ML F+ +A
Sbjct: 199 -LEDKLHPGGPF-DPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLGFFIQA 246
>gi|357159913|ref|XP_003578597.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 6 [Brachypodium distachyon]
Length = 264
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|226510115|ref|NP_001148439.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195619284|gb|ACG31472.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414881723|tpg|DAA58854.1| TPA: chlorophyll a-b binding protein 2 [Zea mays]
Length = 264
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|62176932|emb|CAG25596.1| putative chlorophyll a/b binding protein [Triticum durum]
Length = 250
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 121
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF AG+ +P + S ++ Q++LMG VE R
Sbjct: 122 GEAVWFMAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 173
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 174 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 211
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 212 NGRLAMFSMFGFFVQAIVTGKGPLENL 238
>gi|285804077|gb|ADC35579.1| chloroplast chlorophyll a/b binding protein [Lycoris radiata]
Length = 265
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA + + S ++ TQ++LMG VE R
Sbjct: 126 GEAVWFKAGAQIFSDGGLDYLGNSSLVHAQSILAIWATQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEVTDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
Score = 37.7 bits (86), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 60 GNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
G + +P + GS FDPLGL DP + E+ +GR AM ++ G FV +G
Sbjct: 182 GEVTDPLYPGGS------FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 235
Query: 120 IPWFEAGADP 129
E ADP
Sbjct: 236 KGPLENLADP 245
>gi|302566696|gb|ADL41158.1| chloroplast light-harvesting chlorophyll a/b binding protein
[Triticum aestivum]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|326493298|dbj|BAJ85110.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326493328|dbj|BAJ85125.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEVK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|53627204|gb|AAU89253.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus contorta]
Length = 256
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLREVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|15223108|ref|NP_177783.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
gi|12323973|gb|AAG51944.1|AC015450_5 putative chlorophyll A-B binding protein; 65434-67056 [Arabidopsis
thaliana]
gi|332197739|gb|AEE35860.1| putative chlorophyll a/b-binding protein [Arabidopsis thaliana]
Length = 327
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +L G LPGDYGFD GLGKD Y E++H RWAM A +G + + +
Sbjct: 123 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVFDLTGTFH 182
Query: 119 ----------------------GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
GIP G I + Q+LLM E R+
Sbjct: 183 FAEPVWWRVGYSKLQGETLEYLGIPGLHVAGSQGVIV------IAICQVLLMVGPEYARY 236
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ D
Sbjct: 237 C--------GIEALEPLG------IYLPGDINYPGGTLFDPLNLS---------EDPVAF 273
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 274 EDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNL 309
>gi|115770|sp|P12328.1|CB21_LEMGI RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|168290|gb|AAA33392.1| chlorophyll a/b apoprotein [Lemna gibba]
Length = 264
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 87/208 (41%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQ 123
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + S ++ TQ++LMG +E R
Sbjct: 124 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYR--------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 175 ---VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEI 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPIENL 241
>gi|115771|sp|P12329.1|CB21_MAIZE RecName: Full=Chlorophyll a-b binding protein 1, chloroplastic;
AltName: Full=LHCII type I CAB-1; Short=LHCP; Flags:
Precursor
gi|22224|emb|CAA32900.1| unnamed protein product [Zea mays]
gi|194699340|gb|ACF83754.1| unknown [Zea mays]
gi|195607416|gb|ACG25538.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|195613460|gb|ACG28560.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|414886622|tpg|DAA62636.1| TPA: light harvesting chlorophyll a/b binding protein2 [Zea mays]
Length = 262
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 122
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 123 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 175 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENL 239
>gi|385298939|gb|AFI60242.1| light harvesting chlorophyll a/b binding protein, partial [Panicum
virgatum]
Length = 260
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 61 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 120
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 121 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 173 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 210
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 211 NGRLAMFSMFGFFVQAIVTGKGPLENL 237
>gi|226502080|ref|NP_001147639.1| chlorophyll a-b binding protein 1, chloroplastic precursor [Zea
mays]
gi|195612774|gb|ACG28217.1| chlorophyll a-b binding protein 2 [Zea mays]
Length = 262
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 63 PSYLTGEFPGDYGWDTAGLSADPKTFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 122
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 123 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 174
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 175 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 212
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 213 NGRLAMFSMFGFFVQAIVTGKGPLENL 239
>gi|357159898|ref|XP_003578592.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 1 [Brachypodium distachyon]
gi|357159901|ref|XP_003578593.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 2 [Brachypodium distachyon]
gi|357159904|ref|XP_003578594.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 3 [Brachypodium distachyon]
gi|357159907|ref|XP_003578595.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 4 [Brachypodium distachyon]
gi|357159910|ref|XP_003578596.1| PREDICTED: chlorophyll a-b binding protein 2, chloroplastic-like
isoform 5 [Brachypodium distachyon]
Length = 265
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 178 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|227612|prf||1707316B chlorophyll a/b binding protein 2
Length = 263
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 93/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + S G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA D + LKV E+
Sbjct: 181 EGL------------------DKVYPGGA-FDPLGLAD---------DPDTFAELKVKEL 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A +GK P+ L
Sbjct: 213 KNGRLAMFSMFGFFVQAIVRGKGPIENL 240
>gi|413968456|gb|AFW90565.1| chlorophyll a-b binding protein 3C-like mRNA [Solanum tuberosum]
Length = 233
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 33 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 92
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 93 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------- 145
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 146 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 182
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 183 KNGRLAMFSMFGFFVQAIVTGKGPLENL 210
>gi|242088861|ref|XP_002440263.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
gi|241945548|gb|EES18693.1| hypothetical protein SORBIDRAFT_09g028720 [Sorghum bicolor]
Length = 265
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|289920|gb|AAA18529.1| chlorophyll A/B binding protein [Gossypium hirsutum]
Length = 264
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL A D E LKV EIK
Sbjct: 177 ----GGPLGEVTDPL--------YPGGSF-DPLGFAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|6716783|gb|AAF26741.1|AF220527_1 chlorophyll a/b binding protein precursor [Euphorbia esula]
Length = 268
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 69 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 128
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 129 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 180
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 181 ----GGPLGEVVDPI--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 218
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 219 NGRLAMFSMFGFFVQAIVTGKGPLENL 245
>gi|326506218|dbj|BAJ86427.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 103/252 (40%), Gaps = 54/252 (21%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFD 79
S + L G RVT K + + W A + G + P +L G PGDYG+D
Sbjct: 22 SLSALFGEARVTMRKTTAKAKQVASSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWD 81
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 82 TAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSE 141
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q +LMG VE R P +
Sbjct: 142 GGLDYLGNPSLVHAQSILAIWACQAVLMGAVEGYRIA------------GGPLGEIVDPL 189
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +
Sbjct: 190 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQ 231
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 232 AIVTGKGPLENL 243
>gi|1644289|emb|CAA65042.1| chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea]
Length = 283
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 88/194 (45%), Gaps = 49/194 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PE+L+G + GDYG+DP GLGK P Y+ ELIH RWAM G + +A +
Sbjct: 85 PEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGCIIPEALNKYGANC 144
Query: 121 ----PWFEAGA---DPGAIA------PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSV 167
WF+ GA D ++ P + + +++L+G E R + + E
Sbjct: 145 GPEAVWFKTGALLLDGNTLSYFGKNIPINLVLAVVGEVVLLGGAEYYRITNGLDFE---- 200
Query: 168 EWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHA 227
++ +PGG FDPL LA D E+ LKV EIK+
Sbjct: 201 ------------------DKLHPGGP-FDPLDLAK---------DPEQGALLKVKEIKNG 232
Query: 228 RLAMVAMLIFYFEA 241
RLAM +M F+ +A
Sbjct: 233 RLAMFSMFAFFIQA 246
>gi|688315|gb|AAC78690.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 274
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 187 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|413948509|gb|AFW81158.1| light harvesting chlorophyll a/b binding protein3 [Zea mays]
Length = 302
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 103 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 162
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG +E R
Sbjct: 163 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA-------- 214
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 215 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 252
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 253 NGRLAMFSMFGFFVQAIVTGKGPLENL 279
>gi|149391069|gb|ABR25552.1| chloroplast chlorophyll a-b binding proteinr [Oryza sativa Indica
Group]
Length = 201
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/179 (37%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A + F
Sbjct: 3 PEYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNK---FG 59
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + E V A + R
Sbjct: 60 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAE-YYRIINGLD- 116
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
++ +PGG F DPL LA PD L LKV EIK+ RLAM +ML F+ +A
Sbjct: 117 -LEDKLHPGGPF-DPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLGFFIQA 164
>gi|414881722|tpg|DAA58853.1| TPA: hypothetical protein ZEAMMB73_924562 [Zea mays]
Length = 259
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 60 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 119
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 120 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 171
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 172 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 209
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 210 NGRLAMFSMFGFFVQAIVTGKGPLENL 236
>gi|116779526|gb|ABK21323.1| unknown [Picea sitchensis]
Length = 266
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 29 AGTNRVTSSKKSVVVAALPPKKSWI----PAVKGGGNLINPEWLDGSLPGDYGFDPLGLG 84
A R+T +++V +A P+ W P G + P +L G PGDYG+D GL
Sbjct: 31 ASQARITM-RRTVRIA---PESIWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLS 86
Query: 85 KDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA---------- 127
DP RE E+IH RWAM +G + A +G+ WF+AGA
Sbjct: 87 ADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVKFGEAVWFKAGAQIFSEGGLDY 146
Query: 128 --DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
+P I S ++ +Q++LMG +E R P +
Sbjct: 147 LGNPNLIHAQSILAIWASQVVLMGLIEGYR------------VGGGPLGEGLDPL----- 189
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQG 244
YPGG F DPL LA D E LKV EIK+ RLAM +M F+ +A G
Sbjct: 190 ---YPGGAF-DPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTG 236
Query: 245 KTPLGAL 251
K P+ L
Sbjct: 237 KGPIENL 243
>gi|115786|sp|P06671.1|CB22_MAIZE RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|22357|emb|CAA68451.1| LHCP [Zea mays]
Length = 265
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFGELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
RLAM++M F+ +A GK PL L
Sbjct: 216 KGRLAMLSMFGFFVQAIVTGKGPLENL 242
>gi|115827|sp|P14273.1|CB2_CHLRE RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|20269802|gb|AAM18056.1|AF495472_1 major light-harvesting complex II protein m6 [Chlamydomonas
reinhardtii]
gi|167409|gb|AAA33082.1| chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 253
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 87/208 (41%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP K YRE ELIH RWAM +G G
Sbjct: 53 TPAYLTGEFPGDYGWDTAGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTK 112
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + + + Q++LMG +E R P
Sbjct: 113 FGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNG--GPAG 170
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ P G+ FDPL LA D + LKV EI
Sbjct: 171 EGLDPLYP-------------------GESFDPLGLAD---------DPDTFAELKVKEI 202
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLA +M F+ +A GK P+ L
Sbjct: 203 KNGRLASFSMFGFFVQAIVTGKGPVQNL 230
>gi|397789256|gb|AFO67217.1| putative chlorophyll a/b binding protein [Aralia elata]
Length = 265
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 93/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG+VE R
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYR------VGG 178
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ W ++ YPGG F DPL LA D E LKV E+
Sbjct: 179 GPLGWGL--------------DKIYPGGSF-DPLGLAD---------DPEAFAELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|209868185|gb|ACI90632.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis var. henryi]
gi|209868187|gb|ACI90633.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus hwangshanensis]
gi|209868189|gb|ACI90634.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus tabuliformis]
Length = 254
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 77 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 136
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 137 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 188
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 189 ----GGPLGEVTDPI--------YPGGSF-DPLGLA---------DDPDAFAELKVKEIK 226
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 227 NGRLAMFSMFGFFVQAIVTGKGPIENL 253
>gi|326509659|dbj|BAJ87045.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSFVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEVK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|157987285|gb|ABW07804.1| light-harvesting chlorphyll binding protein 3 [Solenostemon
scutellarioides]
Length = 193
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/200 (34%), Positives = 87/200 (43%), Gaps = 54/200 (27%)
Query: 75 DYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF---VGQAWSGIP-----WFEAG 126
DYG+D GL DP R E+IHGRWAM +G V Q W + WF+AG
Sbjct: 1 DYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCITPEVLQKWLNVTFKEPVWFKAG 60
Query: 127 A------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 174
A +P + S ++LG Q+++MG VE R
Sbjct: 61 AQIFTEGGLDYLGNPNLVHAQSILAVLGFQVVVMGLVEGFRI------------------ 102
Query: 175 RTAENFANATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
N + GE YPGG++FDPL LA D LKV EIK+ RLAM
Sbjct: 103 ----NGLDGVGEGNDLYPGGQYFDPLGLA---------DDPVTFAELKVKEIKNGRLAMF 149
Query: 233 AMLIFYFEA-GQGKTPLGAL 251
+M F+ +A GK PL L
Sbjct: 150 SMFGFFVQAIVTGKGPLENL 169
>gi|357148841|ref|XP_003574911.1| PREDICTED: uncharacterized protein LOC100846020 [Brachypodium
distachyon]
Length = 560
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 61 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 120
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 121 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 172
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 173 ----GGPLGEIVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 210
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 211 NGRLAMFSMFGFFVQAIVTGKGPLENL 237
>gi|357118770|ref|XP_003561122.1| PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like
isoform 4 [Brachypodium distachyon]
Length = 233
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + A +G+
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHSRWAMLGALGCVFPELLARNGVKF 93
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 94 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 145
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 146 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 183
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPLENL 210
>gi|226263|prf||1503276A chlorophyll a/b binding protein
Length = 245
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 46 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 105
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ + I S ++ TQ++LMG VE R
Sbjct: 106 GEACWFKAGSQIFSEGGLDYLGNQSLIHAQSILAIWATQVILMGAVEGYRIA-------- 157
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 158 ----GGPLGEVTDPI--------YPGGS-FDPLALAD---------DPEAFAELKVKELK 195
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 196 NGRLAMFSMFGFFVQAIVTGKGPLENL 222
>gi|67772803|gb|AAY81730.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus krempfii]
Length = 250
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 71 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKF 130
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ +Q++LMG VE R
Sbjct: 131 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWASQVILMGAVEGYRIA-------- 182
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 183 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 220
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 221 NGRLAMFSMFGFFVQAIVTGKGPIENL 247
>gi|110377793|gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
Length = 285
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/193 (37%), Positives = 95/193 (49%), Gaps = 26/193 (13%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A++
Sbjct: 87 PEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFVIPEAFNKF---- 142
Query: 125 AGADPGAIAP-FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183
GAD G A F G+ LLL G + + +V AE +
Sbjct: 143 -GADCGPEAVWFKTGA-----LLLDGNTLNYFGKNIPINLVVAVVAEVVLLGGAEYYRIT 196
Query: 184 TG----EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
G ++ +PGG FDPL LA KD PD + LKV EIK+ RLAM AML F+
Sbjct: 197 NGLDLEDKLHPGGP-FDPLGLA---KD----PDQAAI--LKVKEIKNGRLAMFAMLGFFI 246
Query: 240 EAG-QGKTPLGAL 251
+A GK P+ L
Sbjct: 247 QAYVTGKGPVENL 259
>gi|53627206|gb|AAU89254.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus merkusii]
Length = 256
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|67772801|gb|AAY81729.1| chloroplast putative light harvesting chlorophyll a/b binding
protein, partial [Pinus gerardiana]
Length = 253
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|326520097|dbj|BAK03973.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|407970998|ref|NP_001234739.1| chlorophyll a-b binding protein 4, chloroplastic [Solanum
lycopersicum]
gi|115803|sp|P14278.1|CB24_SOLLC RecName: Full=Chlorophyll a-b binding protein 4, chloroplastic;
AltName: Full=LHCII type I CAB-4; Short=LHCP; Flags:
Precursor
gi|170390|gb|AAA34141.1| chlorophyll a/b-binding protein precursor [Solanum lycopersicum]
Length = 265
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLD------------------KIYPGGAF-DPLGLA---------DDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|255581778|ref|XP_002531690.1| chlorophyll A/B binding protein, putative [Ricinus communis]
gi|223528666|gb|EEF30681.1| chlorophyll A/B binding protein, putative [Ricinus communis]
Length = 265
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILAKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLDPI------------------YPGGAF-DPLGLAD---------DPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|53627208|gb|AAU89255.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus roxburghii]
Length = 256
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLRLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|53627198|gb|AAU89250.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus echinata]
Length = 253
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLA---------DDPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|326510047|dbj|BAJ87240.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 102/248 (41%), Gaps = 54/248 (21%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFDPLGL 83
L G RVT K + + W A + G + P +L G PGDYG+D GL
Sbjct: 26 LFGEARVTMRKTTAKAKQVSSSSPWYGADRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGL 85
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA--------- 127
DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 86 SADPETFAKNRELEVIHCRWAMLGALGSIFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 128 ---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
+P + S ++ Q++LMG VE R P +
Sbjct: 146 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEIVDPL---- 189
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
YPGG FDPL LA D E LKV EIK+ RLAM +M F+ +A
Sbjct: 190 ----YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVT 235
Query: 244 GKTPLGAL 251
GK PL L
Sbjct: 236 GKGPLENL 243
>gi|146150146|gb|ABQ02464.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG+VE R P
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA D + LKV E+
Sbjct: 181 EGL------------------DKVYPGGA-FDPLGLAD---------DPDTFAELKVKEL 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K++RLAM +M F+ +A GK P+ L
Sbjct: 213 KNSRLAMFSMFGFFVQAIVTGKGPIENL 240
>gi|226502967|ref|NP_001142284.1| uncharacterized protein LOC100274453 [Zea mays]
gi|194708004|gb|ACF88086.1| unknown [Zea mays]
gi|195613594|gb|ACG28627.1| chlorophyll a-b binding protein 2 [Zea mays]
gi|413950532|gb|AFW83181.1| light harvesting chlorophyll a/b binding protein1 isoform 1 [Zea
mays]
gi|413950533|gb|AFW83182.1| light harvesting chlorophyll a/b binding protein1 isoform 2 [Zea
mays]
Length = 264
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 177 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPVENL 241
>gi|194703220|gb|ACF85694.1| unknown [Zea mays]
gi|195616570|gb|ACG30115.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|195623468|gb|ACG33564.1| chlorophyll a-b binding protein 1 [Zea mays]
gi|413948507|gb|AFW81156.1| light harvesting chlorophyll a/b binding protein3 isoform 1 [Zea
mays]
gi|413948508|gb|AFW81157.1| light harvesting chlorophyll a/b binding protein3 isoform 2 [Zea
mays]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG +E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|163914163|dbj|BAF95850.1| putative chloroplast chlorophyll a/b binding protein [Vitis hybrid
cultivar]
Length = 234
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 85/196 (43%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ +Q++LMG VE R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVILMGAVEGYRI--------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 177 ---GGGPLGEVVDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 215
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 216 NGRLAMFSMFGFFVQA 231
>gi|19184|emb|CAA43590.1| Type I (26 kD) CP29 polypeptide [Solanum lycopersicum]
Length = 286
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 93/189 (49%), Gaps = 30/189 (15%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PG+YG+DP GL K P Y+ ELIH RWAM G + +A++ F
Sbjct: 88 PEYLNGEVPGEYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAAGFIIPEAFNK---FG 144
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + +V AE +
Sbjct: 145 ANCGPEAVW-FKTGALLLDGNTLNYFGKNIPINLI-------LAVVAEVVLVGGAEYYRI 196
Query: 183 ATG----EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
G ++ +PGG FDPL LA KD PD + LKV EIK+ RLAM +ML F+
Sbjct: 197 INGLDLEDKLHPGGP-FDPLGLA---KD----PDQAAI--LKVKEIKNGRLAMFSMLGFF 246
Query: 239 FEA---GQG 244
+A GQG
Sbjct: 247 IQAYVTGQG 255
>gi|607152|emb|CAA57409.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-2 [Picea
abies]
Length = 275
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 76 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 135
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 136 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 187
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 188 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 225
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 226 NGRLAMFSMFGFFVQAIVTGKGPIENL 252
>gi|218174|dbj|BAA00537.1| type II light-harvesting chlorophyll a/b-binding protein [Oryza
sativa Japonica Group]
Length = 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + S G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELELIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA D + LKV E+
Sbjct: 181 EGL------------------DKVYPGGA-FDPLGLAD---------DPDTFAELKVKEL 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPIENL 240
>gi|168019112|ref|XP_001762089.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686806|gb|EDQ73193.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 103/241 (42%), Gaps = 56/241 (23%)
Query: 31 TNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL 90
T R SS S+ A PK ++ + G P +L G GDYG+D GL DP
Sbjct: 36 TMRKASSSDSIWYGADRPK--YLGPLSGE----TPSYLTGEFAGDYGWDTAGLSSDPETF 89
Query: 91 KWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA------------DPGA 131
RE E+IH RWAM +G + A +G+ WF+AG+ +P
Sbjct: 90 ARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSL 149
Query: 132 IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPG 191
+ S ++ +Q++LMG VE R P + YPG
Sbjct: 150 VHAQSILAIWASQVILMGAVEGYRVA------------GGPLGEVTDPI--------YPG 189
Query: 192 GKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGA 250
G F DPL LA PDT LKV EIK+ RLAM +M F+ +A GK PL
Sbjct: 190 GSF-DPLGLADD-------PDT--FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEN 239
Query: 251 L 251
L
Sbjct: 240 L 240
>gi|412987928|emb|CCO19324.1| predicted protein [Bathycoccus prasinos]
Length = 415
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 81/199 (40%), Gaps = 57/199 (28%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS------ 118
P +LDG+L GD FDPL L + E EL+HGRWAM AVVG+ V + S
Sbjct: 225 PSYLDGTLAGDAQFDPLRLSDTEEKRRRNVELELLHGRWAMLAVVGVCVPEILSRSGALE 284
Query: 119 ----------------------GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
GI F G I + Q +LMG E R+
Sbjct: 285 LSEPIWWKIGEKVLEGIDVNYLGIEGFHIAGASGIIG------IAFCQAVLMGGPEYARY 338
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
V + E V G+ YPGG FDP L+ D E+
Sbjct: 339 VGIESLEPVGVYLP--------------GDTNYPGGGPFDPFNLSA---------DAERD 375
Query: 217 DRLKVAEIKHARLAMVAML 235
L+V+E+KH RLAM+AML
Sbjct: 376 VELRVSEVKHGRLAMIAML 394
>gi|53627202|gb|AAU89252.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus radiata]
Length = 256
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|20182|emb|CAA32109.1| chlorophyll a/b-binding preprotein (AA -28 to 235) [Oryza sativa]
Length = 263
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGGLGCVFPELLARNGVKF 123
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 176 ----GGPLGEVVDPL--------YPGGA-FDPLGLAD---------DPEAFAELKVKEIK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|6446570|dbj|BAA78595.1| hypothetical protein [Chlamydomonas sp. HS-5]
Length = 222
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 93/226 (41%), Gaps = 47/226 (20%)
Query: 22 KKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPL 81
++ + L A R TS V P + W+ G + P +L G PGDYG+D
Sbjct: 10 RQGRCLRAQGERSTSVIARAVEFYGPDRAKWL----GPFSDDTPSYLTGEFPGDYGWDTA 65
Query: 82 GLGKDPAFLKWYREAELIHGRWAMAAVVGI----FVGQAWSGIPWFEAGA---------- 127
GL DP YRE E+IH RWAM +G +G + WF+AGA
Sbjct: 66 GLSADPETFARYREIEVIHARWAMLGALGCITPELIGGDIAEPVWFKAGAQIFSEGGLDY 125
Query: 128 --DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATG 185
+P + S + L Q++LMG E+ R + P E+ N
Sbjct: 126 LGNPSLVHAQSIIATLAVQVILMGQAEAFRAAGYVVPGG-----------FGEDLDNL-- 172
Query: 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAM 231
YPG FDPL IPDT LKV EIK+ RLA
Sbjct: 173 ---YPGDA-FDPLAW--------LIPDT--FAELKVKEIKNGRLAC 204
>gi|115799|sp|P15195.1|CB23_POLMU RecName: Full=Chlorophyll a-b binding protein type 1 member F3,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type I F3; Short=CAB-F3; AltName: Full=LHCP;
Flags: Precursor
gi|169440|gb|AAA68425.1| chlorophyll a/b-binding protein F3 [Polystichum munitum]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLSGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVTPELLAKNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVEDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|974850|emb|CAA61432.1| LHCII type I protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 104/248 (41%), Gaps = 54/248 (21%)
Query: 28 LAGTNRVTSSKKSVVVAALPPKKSWIPAVK----GGGNLINPEWLDGSLPGDYGFDPLGL 83
L G RVT K + + W A + G + P +L G PGDYG+D GL
Sbjct: 26 LFGEARVTMRKTAAKAKQVSSSSPWYGADRVLYLGPLSREPPSYLTGDFPGDYGWDTAGL 85
Query: 84 GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA--------- 127
DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 86 SADPETFSKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLD 145
Query: 128 ---DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
+P + S ++ Q++LMG VE R P + V
Sbjct: 146 YLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGEIV----------------- 186
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ 243
+ YPGG+ FDPL LA + D LKV EIK+ RLAM +M F +A
Sbjct: 187 -DPLYPGGR-FDPLGLA---------ERPQAFDALKVKEIKNGRLAMFSMFGFLVQAIVT 235
Query: 244 GKTPLGAL 251
GK PL L
Sbjct: 236 GKGPLENL 243
>gi|115810|sp|P27496.1|CB25_TOBAC RecName: Full=Chlorophyll a-b binding protein 50, chloroplastic;
AltName: Full=LHCII type I CAB-50; Short=LHCP; Flags:
Precursor
gi|19833|emb|CAA36956.1| unnamed protein product [Nicotiana tabacum]
Length = 267
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV I
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKHI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|159147189|gb|ABW90989.1| LHCB5 [Phyllostachys edulis]
Length = 283
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 84/181 (46%), Gaps = 23/181 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
PE+L+G +PGDYG+DP GL K+P Y+ ELIH RWAM G + +A + F
Sbjct: 85 PEYLNGEVPGDYGYDPFGLSKNPDNFARYQAYELIHARWAMLGAAGFIIPEACNK---FG 141
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + + E N
Sbjct: 142 ANCGPEAVW-FKTGALLLEGNTLNYFG-----NSIPINLAVAVVAEVVLVGGAEYYRIIN 195
Query: 183 ATGEQG--YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+G +PGG F DPL LA D ++ LKV EIK+ RLAM ML F+ +
Sbjct: 196 GLDLEGKLHPGGPF-DPLGLAS---------DPDQAAPLKVKEIKNGRLAMFPMLGFFIQ 245
Query: 241 A 241
A
Sbjct: 246 A 246
>gi|607150|emb|CAA57408.1| light harvesting chlorophyll a /b-binding protein Lhcb1*2-1 [Picea
abies]
Length = 274
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 187 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|346987813|gb|AEO51757.1| chloroplast chlorophyll A/B binding protein [Dimocarpus longan]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/208 (33%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ TQ++LMG+VE R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRIGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPGG F DPL LA D + LKV EI
Sbjct: 183 EGLDPL------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVPGKGPIENL 242
>gi|449527933|ref|XP_004170962.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|449433646|ref|XP_004134608.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|449433636|ref|XP_004134603.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 1 [Cucumis sativus]
gi|449433638|ref|XP_004134604.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 2 [Cucumis sativus]
gi|449433640|ref|XP_004134605.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like isoform 3 [Cucumis sativus]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|168296|gb|AAA33396.1| light-harvesting chlorophyll a/b protein precursor [Lemna gibba]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G GDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|187609486|gb|ACD13266.1| chlorophyll a/b binding protein precursor [Phyllostachys
iridescens]
Length = 205
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 90/188 (47%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM V G+ V +A W
Sbjct: 25 RPVHLDGSSPGDFGFDPLGLATVPENSERFKESEVYHCRWAMLCVPGVLVPEALGLGNWV 84
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + + E +R ++ +PE +
Sbjct: 85 KAQEWAAVPGGQATYFGVPVPWGNLPTILAIEFLAIAFAEHQRTME-KDPEKKK------ 137
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL G KD V KL+ K+ EI++ RLAM+
Sbjct: 138 ----------------YPGGA-FDPL---GFSKDPV------KLEEYKLKEIRNGRLAML 171
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 172 AFVGFCVQ 179
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP L+ Y+ E+ +GR AM A VG V Q+
Sbjct: 143 FDPLGFSKDPVKLEEYKLKEIRNGRLAMLAFVGFCVQQS 181
>gi|223973225|gb|ACN30800.1| unknown [Zea mays]
Length = 196
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 65/201 (32%), Positives = 93/201 (46%), Gaps = 46/201 (22%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P LDGS PGD+GFDPLGL P + ++E+E+ H RWAM AV GI V +A W
Sbjct: 6 RPAHLDGSSPGDFGFDPLGLATVPENFERFKESEVYHCRWAMLAVPGILVPEALGLGNWV 65
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + + + + E +R ++ +PE +
Sbjct: 66 KAQEWAAVPGGQATYLGAPVPWGTLPTILVIEFVAIAFAEHQRTME-KDPEKKK------ 118
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL + D K + K+ EIK+ RLAM+
Sbjct: 119 ----------------YPGGA-FDPLGFSK---------DPAKFEEYKLKEIKNGRLAML 152
Query: 233 AMLIFYFE--AGQGKTPLGAL 251
A + F + A G PL L
Sbjct: 153 AFVGFCVQQSAYPGTGPLENL 173
>gi|414881719|tpg|DAA58850.1| TPA: chlorophyll a-b binding protein 48, Precursor [Zea mays]
Length = 264
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R P +
Sbjct: 125 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVAG--GPLGE 182
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V + YPGG FDPL LA D E LKV EIK
Sbjct: 183 VV------------------DPLYPGGS-FDPLGLAD---------DPEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPIENL 241
>gi|116779784|gb|ABK21429.1| unknown [Picea sitchensis]
gi|116782287|gb|ABK22448.1| unknown [Picea sitchensis]
gi|116785934|gb|ABK23914.1| unknown [Picea sitchensis]
gi|116786318|gb|ABK24064.1| unknown [Picea sitchensis]
gi|116791776|gb|ABK26103.1| unknown [Picea sitchensis]
gi|116793629|gb|ABK26818.1| unknown [Picea sitchensis]
gi|148909078|gb|ABR17641.1| unknown [Picea sitchensis]
gi|224284321|gb|ACN39896.1| unknown [Picea sitchensis]
gi|224284480|gb|ACN39974.1| unknown [Picea sitchensis]
gi|224284600|gb|ACN40033.1| unknown [Picea sitchensis]
gi|224285740|gb|ACN40585.1| unknown [Picea sitchensis]
gi|224285871|gb|ACN40649.1| unknown [Picea sitchensis]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKTGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ +Q++LMG +E R
Sbjct: 126 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR--------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 177 ---VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|326511319|dbj|BAJ87673.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRIA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 179 ----GGPLGEIVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 216
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 217 NGRLAMFSMFGFFVQA 232
>gi|3036942|dbj|BAA25388.1| light harvesting chlorophyll a/b-binding protein [Nicotiana
sylvestris]
Length = 265
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 SPSYLTSEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 178 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|20178|emb|CAA32108.1| chlorophyll a/b-binding preprotein (AA -31 to 235) [Oryza sativa]
Length = 266
Score = 77.8 bits (190), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R P +
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIAG--GPLGE 184
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V + YPGG FDPL LA D E LKV +IK
Sbjct: 185 VV------------------DPLYPGGA-FDPLGLAD---------DPEACAELKVKKIK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPLENL 243
>gi|209868193|gb|ACI90636.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus massoniana]
Length = 233
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 115
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 116 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 167
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 168 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 205
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 206 NGRLAMFSMFGFFVQAIVTGKGPIENL 232
>gi|148514659|gb|ABQ81857.1| chloroplast chlorophyll a/b binding protein [Phyllostachys edulis]
Length = 265
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVQF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 216 NGRLAMFSMFGFFVQA 231
>gi|115817|sp|P15193.1|CB2A_PINSY RecName: Full=Chlorophyll a-b binding protein type 2 member 1A,
chloroplastic; AltName: Full=Chlorophyll a-b binding
protein type II 1A; Short=CAB; AltName: Full=LHCP;
Flags: Precursor
gi|20661|emb|CAA32657.1| unnamed protein product [Pinus sylvestris]
Length = 278
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P I S ++ Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 191 ----GGPLGEVTDPI--------YPGGNF-DPLGLAD---------DPDAFAELKVKEIK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPIENL 255
>gi|29123378|gb|AAO62942.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + S ++ Q++LMG +E R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGLIEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLD------------------KIYPGGAF-DPLGLA---------DDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|384246702|gb|EIE20191.1| light harvesting complex a protein [Coccomyxa subellipsoidea C-169]
Length = 230
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/175 (38%), Positives = 84/175 (48%), Gaps = 42/175 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--PW 122
P L G L GD GFDPLGLG +P LKWY EAE +GRWAMA V GI +GQ G+ W
Sbjct: 45 PAHLKGELAGDRGFDPLGLGSEPERLKWYTEAEKTNGRWAMAGVAGI-LGQELLGVQPKW 103
Query: 123 FEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
FEAGA P +L+ + LL+G++E KR+ F
Sbjct: 104 FEAGAKDYGFPPL---ALISLEFLLLGFLELKRYQGF----------------------K 138
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIF 237
TG+ G+ FDP L + EK EIK+ RLAMVA + F
Sbjct: 139 KTGKSGFLDSFPFDPANLDSEA-------NAEK-------EIKNGRLAMVAFVGF 179
>gi|53627200|gb|AAU89251.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus ponderosa]
Length = 256
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 184 ----GGPLGXVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|116778744|gb|ABK20976.1| unknown [Picea sitchensis]
gi|116779697|gb|ABK21395.1| unknown [Picea sitchensis]
gi|116790882|gb|ABK25775.1| unknown [Picea sitchensis]
gi|148908056|gb|ABR17147.1| unknown [Picea sitchensis]
gi|148908517|gb|ABR17370.1| unknown [Picea sitchensis]
gi|224284311|gb|ACN39891.1| unknown [Picea sitchensis]
gi|224284945|gb|ACN40202.1| unknown [Picea sitchensis]
gi|224285575|gb|ACN40506.1| unknown [Picea sitchensis]
gi|224285579|gb|ACN40508.1| unknown [Picea sitchensis]
Length = 274
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 187 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 225 NGRLAMFSMFGFFVQAIVTGKGPIENL 251
>gi|223974123|gb|ACN31249.1| unknown [Zea mays]
Length = 233
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 93
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 94 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEGYRIA-------- 145
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 146 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 183
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPLENL 210
>gi|349443|gb|AAA60965.1| light-harvesting chlorophyll a/b binding protein of photosystem II
[Ginkgo biloba]
Length = 270
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 75/245 (30%), Positives = 100/245 (40%), Gaps = 58/245 (23%)
Query: 31 TNRVTSSKKSVVVAALP----PKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKD 86
T R T+SKK V + P + ++ G P +L G PGDYG+D GL D
Sbjct: 37 TMRKTASKKVVASSGSPWYGPDRVKYLGPFSGEA----PSYLTGEFPGDYGWDTAGLSAD 92
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFV-------GQAWSGIPWFEAGA------------ 127
P RE E+IH RWAM +G G + WF+AG+
Sbjct: 93 PETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSDGGLDYLG 152
Query: 128 DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187
+P I S ++ Q++LMG VE R P +
Sbjct: 153 NPSLIHAQSILAIWACQVILMGAVEGYRIA------------GGPLGEITDPI------- 193
Query: 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKT 246
YPGG F DPL LA D + LKV E+K+ RLAM +M F+ +A GK
Sbjct: 194 -YPGGSF-DPLGLAD---------DPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKG 242
Query: 247 PLGAL 251
P+ L
Sbjct: 243 PIENL 247
>gi|53748425|emb|CAH59405.1| light harvesting protein 1 [Plantago major]
Length = 229
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 29 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVK 88
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 89 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRVA------- 141
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 142 -----GGPLGEVVDPL--------YPGGS-FDPLGLA---------EDPEAFAELKVKEL 178
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 179 KNGRLAMFSMFGFFVQAIVTGKGPLENL 206
>gi|359754897|gb|AEV59638.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis arctobia]
Length = 212
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 151
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV E+K
Sbjct: 152 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKELK 189
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 190 NGRLAMFSMFGFFVQA 205
>gi|63003222|dbj|BAD97888.1| CAB homologue1 [Lemna paucicostata]
Length = 231
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G GDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 36 PSYLTGEFAGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPELLARNGVKF 95
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 96 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVA-------- 147
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 148 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 185
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 186 NGRLAMFSMFGFFVQAIVTGKGPLENL 212
>gi|115768|sp|P08221.1|CB21_CUCSA RecName: Full=Chlorophyll a-b binding protein of LHCII type I,
chloroplastic; Short=CAB; Short=LHCP; Flags: Precursor
gi|167523|gb|AAA33124.1| chlorophyll a/b-binding protein, partial [Cucumis sativus]
Length = 255
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 56 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 115
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 116 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 167
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 168 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 205
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 206 NGRLAMFSMFGFFVQAIVTGKGPLENL 232
>gi|297839529|ref|XP_002887646.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297333487|gb|EFH63905.1| chlorophyll A-B binding family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 330
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 86/216 (39%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA-------- 116
P +L G LPGDYGFD GLGKD Y E++H RWAM A +G + +
Sbjct: 126 PPYLTGELPGDYGFDIAGLGKDRLTFDKYFNFEILHARWAMLAALGALIPEVLDLTGAFH 185
Query: 117 --------------------WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
+ GIP G I + Q+LLM E R+
Sbjct: 186 FAEPVWWRVGYSKLQGETLDYLGIPGLHVAGSQGVIV------IAICQVLLMVGPEYARY 239
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ D
Sbjct: 240 C--------GIEALEPLG------IYLPGDINYPGGTLFDPLNLS---------EDPVAF 276
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 277 EDLKVKEIKNGRLAMVAWLGFYAQAAFTGKGPVQNL 312
>gi|53627210|gb|AAU89256.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus chiapensis]
Length = 256
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDHLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|53627212|gb|AAU89257.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus flexilis]
gi|53627214|gb|AAU89258.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus lambertiana]
gi|53627216|gb|AAU89259.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus monticola]
gi|53627218|gb|AAU89260.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Pinus strobus]
Length = 256
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 184 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKELK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFVQAIVTGKGPIENL 248
>gi|116780878|gb|ABK21859.1| unknown [Picea sitchensis]
gi|116780908|gb|ABK21874.1| unknown [Picea sitchensis]
gi|116786305|gb|ABK24058.1| unknown [Picea sitchensis]
gi|116788326|gb|ABK24837.1| unknown [Picea sitchensis]
gi|116791751|gb|ABK26095.1| unknown [Picea sitchensis]
gi|224284118|gb|ACN39796.1| unknown [Picea sitchensis]
gi|224284899|gb|ACN40179.1| unknown [Picea sitchensis]
Length = 266
Score = 77.4 bits (189), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 80/275 (29%), Positives = 114/275 (41%), Gaps = 56/275 (20%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWI----PAV 56
MA A++ + G + + + G ++ + + V +A P+ W P
Sbjct: 1 MATASAIQSSSLAGQTLLRPHQNELVKKVGASQARITMRRTVRSA--PESIWYGPDRPKY 58
Query: 57 KGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G + P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 59 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEL 118
Query: 116 -AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
A +G+ WF+AGA +P I S ++ +Q++LMG +E R
Sbjct: 119 LAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR-- 176
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
P + YPGG F DPL LA D E
Sbjct: 177 ----------VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFA 208
Query: 218 RLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LKV EIK+ RLAM +M F+ +A GK P+ L
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|168049357|ref|XP_001777130.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671573|gb|EDQ58123.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 348
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 88/199 (44%), Gaps = 45/199 (22%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV--------GQA 116
P+ L G PGDYGFD LGL +DP + Y E++H RWAM A +G+ + G
Sbjct: 143 PDHLQGEAPGDYGFDILGLSRDPTAFERYFNFEILHARWAMLAALGVVIPELLDRFGGVQ 202
Query: 117 WSGIPWFEAGAD------------PGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNP 162
+S W++ G PG + G L+ Q++LM E R+
Sbjct: 203 FSEPVWWKVGYAKLQGDTLDYLGIPGLHIAGAQGILVIAFCQVILMLGPEYARYC----- 257
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+E P G+ YPGG FDPL G KD D LKV
Sbjct: 258 ---GIEALEPLG------IFLPGDVNYPGGALFDPL---GLTKDAAAFED------LKVK 299
Query: 223 EIKHARLAMVAMLIFYFEA 241
E+K+ RLAMVA L FY +A
Sbjct: 300 EMKNGRLAMVAWLGFYVQA 318
>gi|116782449|gb|ABK22510.1| unknown [Picea sitchensis]
gi|116782855|gb|ABK22691.1| unknown [Picea sitchensis]
gi|116791804|gb|ABK26115.1| unknown [Picea sitchensis]
gi|148908337|gb|ABR17282.1| unknown [Picea sitchensis]
Length = 278
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++ Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGGLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGNF-DPLGLA---------DDPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|20939|emb|CAA43907.1| chlorophyll a/b-binding protein [Pinus thunbergii]
Length = 266
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 113/275 (41%), Gaps = 56/275 (20%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWI----PAV 56
MA A++ + G + + + GT + + + V +A P+ W P
Sbjct: 1 MATASAIQSSSLAGQTLLRPQQNELVKKVGTAQARITMRRTVRSA--PESIWYGPDRPKY 58
Query: 57 KGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G + P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 59 LGPFSEGTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCLFPEL 118
Query: 116 -AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
A +G+ WF+AGA +P I S ++ Q++LMG +E R
Sbjct: 119 LAKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR-- 176
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
P + YPGG F DPL LA D E
Sbjct: 177 ----------VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFA 208
Query: 218 RLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LKV EIK+ RLAM +M F+ +A GK P+ L
Sbjct: 209 ELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|115484899|ref|NP_001067593.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|62733869|gb|AAX95978.1| chlorophyll a/b-binding protein CP26 precursor - maize [Oryza
sativa Japonica Group]
gi|108864184|gb|ABA92338.2| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
gi|113644815|dbj|BAF27956.1| Os11g0242800 [Oryza sativa Japonica Group]
gi|125576735|gb|EAZ17957.1| hypothetical protein OsJ_33501 [Oryza sativa Japonica Group]
gi|215692422|dbj|BAG87842.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215704351|dbj|BAG93785.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 283
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/179 (36%), Positives = 86/179 (48%), Gaps = 19/179 (10%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P++L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A + F
Sbjct: 85 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNK---FG 141
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + E V A + R
Sbjct: 142 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLIVAVAAEVVLVGGAE-YYRIINGLD- 198
Query: 183 ATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA 241
++ +PGG F DPL LA PD L LKV EIK+ RLAM +ML F+ +A
Sbjct: 199 -LEDKLHPGGPF-DPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLGFFIQA 246
>gi|373882292|gb|AEY78525.1| chlorophyll a/b-binding protein [Tagetes erecta]
Length = 265
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEVLSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ +Q++LMG +E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV E+
Sbjct: 183 EGLD------------------KIYPGGSF-DPLGLAD---------DPEAFAELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 37.4 bits (85), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + EL +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 229
>gi|310696692|gb|ADP06401.1| putative chlorophyll A/B binding protein [Hevea brasiliensis]
Length = 175
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 84/196 (42%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 10 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 69
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG VE R
Sbjct: 70 GEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 121
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV EIK
Sbjct: 122 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKEIK 159
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 160 NGRLAMFSMFGFFVQA 175
>gi|340002459|gb|AEK26372.1| chloroplast photosystem II chlorophyll a/b binding protein [Sedum
alfredii]
Length = 265
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ +Q++LMG +E R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV E+
Sbjct: 183 EGLD------------------KIYPGGSF-DPLGLA---------DDPEAFAELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPVENL 242
Score = 37.7 bits (86), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + EL +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFV 229
>gi|224083380|ref|XP_002307004.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
gi|222856453|gb|EEE94000.1| light-harvesting complex II protein Lhcb7 [Populus trichocarpa]
Length = 338
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 92/204 (45%), Gaps = 34/204 (16%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ------AWS 118
P +L G LPGDYGFD GL +DP + Y E++H RWAM A +G + + A+
Sbjct: 133 PTYLSGELPGDYGFDVAGLAEDPVAFQRYFNFEILHARWAMLAALGALIPEVLDLSGAFH 192
Query: 119 GIP--WFEAG--------ADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVE 168
I W+ G D I F G +L++ + ++ V +E
Sbjct: 193 FIEPVWWRVGYSKLKGDTLDYLGIPGLHFAG--GQGVLVIAFCQAILMVGPEYARYCGIE 250
Query: 169 WATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHAR 228
P G+ YPGG FDPL L+ KD V + LKV EIK+ R
Sbjct: 251 ALEPLG------IYLPGDINYPGGILFDPLNLS---KDPV------SFEELKVKEIKNGR 295
Query: 229 LAMVAMLIFYFEAG-QGKTPLGAL 251
LAMVA L FY +A GK P+ L
Sbjct: 296 LAMVAWLGFYIQAALTGKGPVENL 319
>gi|298573438|gb|ADI88502.1| protoporphyrin IX magnesium chelatase [Pteris vittata]
Length = 266
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE ELIH RWAM +G + A +G+
Sbjct: 67 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELELIHARWAMLGALGCVTPELLAKNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 GEAVWFKAGSQIFAEGGLDYLGNPSLVHAQSILAIWAFQVVLMGAVEGYRVA-------- 178
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 179 ----GGPLGEVEDPL--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|388503040|gb|AFK39586.1| unknown [Medicago truncatula]
Length = 265
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R P +
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIAG--GPPGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
V + YPGG FDPL LA D E LKV E+K
Sbjct: 184 VV------------------DPLYPGGS-FDPLGLA---------EDPEAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|226492741|ref|NP_001148271.1| chlorophyll a-b binding protein [Zea mays]
gi|195617084|gb|ACG30372.1| chlorophyll a-b binding protein [Zea mays]
gi|238006080|gb|ACR34075.1| unknown [Zea mays]
gi|414871640|tpg|DAA50197.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 1 [Zea mays]
gi|414871641|tpg|DAA50198.1| TPA: type II light-harvesting chlorophyll a /b-binding protein
isoform 2 [Zea mays]
gi|414871644|tpg|DAA50201.1| TPA: light harvesting chlorophyll binding protein9 isoform 1 [Zea
mays]
gi|414871645|tpg|DAA50202.1| TPA: light harvesting chlorophyll binding protein9 isoform 2 [Zea
mays]
Length = 260
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 119
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 120 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA PDT LKV E+
Sbjct: 178 EGL------------------DKVYPGGA-FDPLGLADD-------PDTAA--ELKVKEL 209
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 210 KNGRLAMFSMFGFFVQAIVTGKGPIENL 237
>gi|115802|sp|P27494.1|CB23_TOBAC RecName: Full=Chlorophyll a-b binding protein 36, chloroplastic;
AltName: Full=LHCII type I CAB-36; Short=LHCP; Flags:
Precursor
gi|19827|emb|CAA41188.1| chlorophyll a/b binding protein [Nicotiana tabacum]
Length = 265
Score = 77.0 bits (188), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ +Q++LMG +E R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLD------------------KIYPGGAF-DPLGLA---------DDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 36.6 bits (83), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|224284623|gb|ACN40044.1| unknown [Picea sitchensis]
Length = 278
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 79 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 138
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P + S ++ Q++LMG +E R
Sbjct: 139 GEAVWFKAGAQIFSEGWLDYLGSPNLVHAQSILAIWACQVILMGAIEGYRVA-------- 190
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D + LKV E+K
Sbjct: 191 ----GGPLGEVTDPI--------YPGGN-FDPLGLAD---------DPDAFAELKVKELK 228
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 229 NGRLAMFSMFGFFVQAIVTGKGPLENL 255
>gi|195618248|gb|ACG30954.1| chlorophyll a-b binding protein [Zea mays]
Length = 260
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 60 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 119
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 120 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 177
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA PDT LKV E+
Sbjct: 178 EGL------------------DKVYPGGA-FDPLGLADD-------PDTAA--ELKVKEL 209
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 210 KNGRLAMFSMFGFFVQAIVTGKGPIENL 237
>gi|4512125|gb|AAD21625.1| putative chlorophyll a/b-binding protein [Phalaenopsis hybrid
cultivar]
Length = 277
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 78 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLARNGVKF 137
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 138 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGAVEGYRIA-------- 189
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPG F DPL LA D E LKV E+K
Sbjct: 190 ----GGPLGEITDPL--------YPGNSF-DPLGLAD---------DPEAFAELKVKELK 227
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 228 NGRLAMFSMFGFFVQAIVTGKGPLENL 254
>gi|357495319|ref|XP_003617948.1| Chlorophyll a/b binding protein [Medicago truncatula]
gi|355519283|gb|AET00907.1| Chlorophyll a/b binding protein [Medicago truncatula]
Length = 265
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG+VE R P +
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ YPGG F DPL LA D + LKV E+K
Sbjct: 184 GLDPL------------------YPGGAF-DPLGLAD---------DPDAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPVQNL 242
>gi|449455992|ref|XP_004145734.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
gi|449525484|ref|XP_004169747.1| PREDICTED: chlorophyll a-b binding protein, chloroplastic-like
[Cucumis sativus]
Length = 267
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 68 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 180 ----GGPLGEITDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|116785754|gb|ABK23846.1| unknown [Picea sitchensis]
Length = 161
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 44/68 (64%), Gaps = 6/68 (8%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
P WLDGSLP D+GFDPLGLG DP LKW ++EL+H RWAM GIF+ + + +
Sbjct: 83 PPWLDGSLPADFGFDPLGLGSDPETLKWNVQSELVHCRWAMLGAAGIFIPELLTKLGILN 142
Query: 121 --PWFEAG 126
W+ AG
Sbjct: 143 TPSWYTAG 150
>gi|108864186|gb|ABG22426.1| Chlorophyll A-B binding protein, expressed [Oryza sativa Japonica
Group]
Length = 222
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/183 (36%), Positives = 87/183 (47%), Gaps = 27/183 (14%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
P++L+G +PGDYG+DP GL K P Y+ ELIH RWAM G + +A + F
Sbjct: 24 PDYLNGEVPGDYGYDPFGLSKKPEDFSKYQAYELIHARWAMLGAAGFIIPEACNK---FG 80
Query: 125 AGADPGAIAPFSFGSLL--GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFAN 182
A P A+ F G+LL G L G + +V AE +
Sbjct: 81 ANCGPEAVW-FKTGALLLDGNTLNYFGNSIPINLI-------VAVAAEVVLVGGAEYYRI 132
Query: 183 ATG----EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
G ++ +PGG F DPL LA PD L LKV EIK+ RLAM +ML F+
Sbjct: 133 INGLDLEDKLHPGGPF-DPLGLASD-------PDQAAL--LKVKEIKNGRLAMFSMLGFF 182
Query: 239 FEA 241
+A
Sbjct: 183 IQA 185
>gi|260914751|gb|ACX54226.1| chlorophyll A/B binding protein [Jatropha curcas]
Length = 261
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 68/205 (33%), Positives = 90/205 (43%), Gaps = 50/205 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPGG F DPL LA D + LKV EI
Sbjct: 183 EGLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
K+ RLAM +M F+ +A GK P+
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPI 239
>gi|5714656|gb|AAD48017.1|AF165529_1 chlorophyll a/b binding protein [Rumex palustris]
Length = 264
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/208 (31%), Positives = 87/208 (41%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVQ 123
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ Q++LMG+VE R
Sbjct: 124 FGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYR--------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 175 ---VGGGPLGEDLDKL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEL 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPVENL 241
>gi|116782134|gb|ABK22382.1| unknown [Picea sitchensis]
gi|116783875|gb|ABK23122.1| unknown [Picea sitchensis]
gi|116792700|gb|ABK26462.1| unknown [Picea sitchensis]
gi|148905950|gb|ABR16136.1| unknown [Picea sitchensis]
gi|224285016|gb|ACN40237.1| unknown [Picea sitchensis]
Length = 266
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 114/275 (41%), Gaps = 56/275 (20%)
Query: 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWI----PAV 56
MA A++ + + G + + + G ++ + + V +A P+ W P
Sbjct: 1 MATASAIQISSLAGQTLLRPQQNELVSKVGASQARITMRRTVRSA--PESIWYGPDRPKY 58
Query: 57 KGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ- 115
G + P +L G PGDYG+D GL DP RE E+IH RWAM +G +
Sbjct: 59 LGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEL 118
Query: 116 -AWSGIP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWV 157
A +G+ WF+AGA +P I S ++ Q++LMG +E R
Sbjct: 119 LAKTGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAFQVVLMGLIEGYR-- 176
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217
P + YPGG F DPL LA D E
Sbjct: 177 ----------VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFA 208
Query: 218 RLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
LKV E+K+ RLAM +M F+ +A GK P+ L
Sbjct: 209 ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|242070955|ref|XP_002450754.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
gi|241936597|gb|EES09742.1| hypothetical protein SORBIDRAFT_05g017165 [Sorghum bicolor]
Length = 88
Score = 77.0 bits (188), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 37/64 (57%), Positives = 46/64 (71%), Gaps = 6/64 (9%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
+ +W+P L P LDG+LPGD+GFDPLGLG+DPA LKWY +AEL+H R+AMA V
Sbjct: 28 RPTWLPG------LDPPPHLDGTLPGDFGFDPLGLGEDPASLKWYVQAELVHCRFAMAGV 81
Query: 109 VGIF 112
GI
Sbjct: 82 AGIL 85
>gi|413968514|gb|AFW90594.1| chloroplast chlorophyll a/b binding protein [Solanum tuberosum]
Length = 276
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 79/252 (31%), Positives = 105/252 (41%), Gaps = 56/252 (22%)
Query: 24 SQALLAGTNRVTSSKKSVVVAALPPKKSWI--PAVKGGGNLI--NPEWLDGSLPGDYGFD 79
S + ++G R+T K V + P W VK G +P +L G PGDYG+D
Sbjct: 23 SASEISGNGRITMRK--AVAKSAPSSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWD 80
Query: 80 PLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP-----WFEAGA----- 127
GL DP RE E+IH RWAM +G + A +G+ WF+AG+
Sbjct: 81 TAGLSADPETFAKNRELEVIHCRWAMLGALGCDFPELLARNGVKFGEAVWFKAGSQIFSE 140
Query: 128 -------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
+P + S ++ Q++LMG VE R P +
Sbjct: 141 GGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------------GGPLGEVVDPL 188
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
YPGG FDPL LA D E LKV EIK+ RLAM + F+ +
Sbjct: 189 --------YPGGS-FDPLGLAD---------DPEAFAELKVKEIKNGRLAMFSTFGFFVQ 230
Query: 241 A-GQGKTPLGAL 251
A GK PL L
Sbjct: 231 AIVTGKGPLENL 242
>gi|170404|gb|AAA34148.1| chlorophyll a/b-binding protein Cab-3C [Solanum lycopersicum]
Length = 267
Score = 77.0 bits (188), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 67 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 126
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 127 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRIA------- 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL A D E LKV EI
Sbjct: 180 -----GGPLGEVVDPL--------YPGGS-FDPLGPAD---------DPEAFAELKVKEI 216
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 217 KNGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|242038937|ref|XP_002466863.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
gi|241920717|gb|EER93861.1| hypothetical protein SORBIDRAFT_01g015400 [Sorghum bicolor]
Length = 262
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 94/208 (45%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 62 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILAKNGVK 121
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 122 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 179
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA PDT LKV E+
Sbjct: 180 EGL------------------DKVYPGGA-FDPLGLADD-------PDTAA--ELKVKEL 211
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 212 KNGRLAMFSMFGFFVQAIVTGKGPIENL 239
>gi|428230866|gb|AFY99055.1| chlorophyll binding protein, partial [Lobelia erinus]
Length = 197
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 38/185 (20%)
Query: 77 GFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIP 121
GFDPLGL DP F+ KW E+I+GR+AM G + A + +P
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 122 WFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
WF+ G P A P++ L ++ LMG+ E +R D++NP S ++ +
Sbjct: 60 WFQTGVIPPAGSYTYWADPYT---LFVFEMALMGFAEHRRLQDWYNPGSMGKQY---FLG 113
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ FA +G+ YPGG FF+PL D + + LK+ EIK+ RLAM+A+L
Sbjct: 114 LEKGFA-GSGDPAYPGGPFFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAIL 163
Query: 236 IFYFE 240
++ +
Sbjct: 164 GYFIQ 168
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE 124
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+
Sbjct: 123 DPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQ 178
>gi|405615|emb|CAA43803.1| LHC II Type III chlorophyll a/b binding protein [Brassica napus]
Length = 267
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 94/210 (44%), Gaps = 53/210 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDP--AFLKWYREAELIHGRWAMAAVVGIF---VGQAWSG 119
P + G PGDYG+D GL DP AF K E+I+GRWAM G V Q W
Sbjct: 64 PSYPTGEFPGDYGWDTAGLSADPEKAFAK-NIALEVIYGRWAMLGAFGCITPEVLQKWVR 122
Query: 120 IP-----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
+ WF+AG+ +P + S ++LG Q++LMG VE R ++ F+
Sbjct: 123 VDFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVILMGLVEGFR-INRFDG 181
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
+ G YPGGK+FD L L + D LKV
Sbjct: 182 VGE-------------------GNDLYPGGKYFDLLSL---------VDDQVTFVELKVK 213
Query: 223 EIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251
EIK+ LAM +M F+ +A GK PL +L
Sbjct: 214 EIKNGMLAMFSMFGFFVQAIVTGKDPLESL 243
>gi|449455655|ref|XP_004145567.1| PREDICTED: chlorophyll a-b binding protein of LHCII type I,
chloroplastic-like [Cucumis sativus]
Length = 338
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/216 (31%), Positives = 87/216 (40%), Gaps = 58/216 (26%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA-------- 116
P++L G LPGDYGFD GL +DP + + E++H RWAM A +G V +
Sbjct: 130 PKYLTGELPGDYGFDIAGLSEDPVAFQKFFNFEILHARWAMLASLGALVPEILDIFGAFH 189
Query: 117 --------------------WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRW 156
+ GIP G I + Q +LM E R+
Sbjct: 190 FTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIV------IAICQAILMVGPEYARY 243
Query: 157 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKL 216
+E P G+ YPGG FDPL L+ D
Sbjct: 244 C--------GIEALEPLG------IYLPGDINYPGGVLFDPLNLSK---------DAAAF 280
Query: 217 DRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
+ LKV EIK+ RLAMVA L FY +A GK P+ L
Sbjct: 281 EELKVKEIKNGRLAMVAWLGFYSQAALTGKGPVQNL 316
>gi|115453971|ref|NP_001050586.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|122246902|sp|Q10HD0.1|CB23_ORYSJ RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|152013384|sp|A2XJ35.1|CB23_ORYSI RecName: Full=Chlorophyll a-b binding protein, chloroplastic;
AltName: Full=LHCII type I CAB; Short=LHCP; Flags:
Precursor
gi|50839002|gb|AAT81763.1| chlorophyll a/b binding protein [Oryza sativa Japonica Group]
gi|108709618|gb|ABF97413.1| Chlorophyll a-b binding protein, chloroplast precursor, putative,
expressed [Oryza sativa Japonica Group]
gi|113549057|dbj|BAF12500.1| Os03g0592500 [Oryza sativa Japonica Group]
gi|125544706|gb|EAY90845.1| hypothetical protein OsI_12453 [Oryza sativa Indica Group]
gi|125586998|gb|EAZ27662.1| hypothetical protein OsJ_11611 [Oryza sativa Japonica Group]
gi|385718838|gb|AFI71846.1| chlorophyll a/b binbing protein [Oryza sativa]
Length = 263
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 92/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 63 TPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKNGVK 122
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAVQVVLMGFVEGYRVGG--GPLG 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FDPL LA D + LKV E+
Sbjct: 181 EGL------------------DKVYPGGA-FDPLGLAD---------DPDTFAELKVKEL 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 213 KNGRLAMFSMFGFFVQAIVTGKGPIENL 240
>gi|116782415|gb|ABK22497.1| unknown [Picea sitchensis]
gi|116786586|gb|ABK24164.1| unknown [Picea sitchensis]
gi|116791880|gb|ABK26145.1| unknown [Picea sitchensis]
gi|148908679|gb|ABR17447.1| unknown [Picea sitchensis]
gi|148909254|gb|ABR17727.1| unknown [Picea sitchensis]
gi|224284476|gb|ACN39972.1| unknown [Picea sitchensis]
gi|224285327|gb|ACN40388.1| unknown [Picea sitchensis]
Length = 266
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKTGVK 125
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ +Q++LMG +E R
Sbjct: 126 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR--------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 177 ---VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPESFAELKVKEI 215
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 216 KNGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|53627228|gb|AAU89265.1| chloroplast light harvesting chlorophyll a/b binding protein,
partial [Picea sitchensis]
Length = 253
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 72 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 131
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 132 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 184 ----GGPLGEITDPI--------YPGGSF-DPLGLA---------DDPDAFAELKVKELK 221
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 222 NGRLAMFSMFGFFXQAIVTGKGPIENL 248
>gi|388514477|gb|AFK45300.1| unknown [Medicago truncatula]
Length = 265
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 83/196 (42%), Gaps = 49/196 (25%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPEILEKNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ TQ++LMG+VE R
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYR---------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV E+K
Sbjct: 176 --VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPDAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA 241
+ RLAM +M F+ +A
Sbjct: 216 NGRLAMFSMFGFFVQA 231
>gi|224381552|gb|ACN41907.1| chlorophyll A/B binding protein [Gardenia jasminoides]
Length = 264
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 87/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMPGALGCVFPELLSRNGVKF 124
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG VE R
Sbjct: 125 GEAVWFKAGSQIFQEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIA-------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA E LKV EIK
Sbjct: 177 ----GGPLGEVTDPI--------YPGGSF-DPLGLADV---------PEAFAELKVKEIK 214
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 215 NGRLAMFSMFGFFVQAIVTGKGPLENL 241
>gi|359754905|gb|AEV59642.1| chloroplast photosystem II light harvesting complex protein type I,
partial [Oxytropis maydelliana]
Length = 238
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 40 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 99
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 100 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWAVQVILMGAVEGYRIA-------- 151
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E KV E+K
Sbjct: 152 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAEXKVKELK 189
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 190 NGRLAMFSMFGFFVQAIVTGKGPLENL 216
>gi|427338317|gb|AFY52157.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338319|gb|AFY52158.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338321|gb|AFY52159.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338323|gb|AFY52160.1| chlorophyll binding protein, partial [Clermontia kohalae]
gi|427338325|gb|AFY52161.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338327|gb|AFY52162.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338329|gb|AFY52163.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338331|gb|AFY52164.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338333|gb|AFY52165.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338335|gb|AFY52166.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338337|gb|AFY52167.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338339|gb|AFY52168.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338341|gb|AFY52169.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338343|gb|AFY52170.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338345|gb|AFY52171.1| chlorophyll binding protein, partial [Clermontia grandiflora subsp.
grandiflora]
gi|427338347|gb|AFY52172.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338349|gb|AFY52173.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338351|gb|AFY52174.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338353|gb|AFY52175.1| chlorophyll binding protein, partial [Clermontia micrantha]
gi|427338355|gb|AFY52176.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338357|gb|AFY52177.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338359|gb|AFY52178.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338361|gb|AFY52179.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338363|gb|AFY52180.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338365|gb|AFY52181.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338367|gb|AFY52182.1| chlorophyll binding protein, partial [Clermontia tuberculata]
gi|427338369|gb|AFY52183.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338371|gb|AFY52184.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338373|gb|AFY52185.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338375|gb|AFY52186.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
gi|427338383|gb|AFY52190.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338385|gb|AFY52191.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338387|gb|AFY52192.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338389|gb|AFY52193.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338391|gb|AFY52194.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338393|gb|AFY52195.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338395|gb|AFY52196.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338397|gb|AFY52197.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338399|gb|AFY52198.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338401|gb|AFY52199.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338403|gb|AFY52200.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338405|gb|AFY52201.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338407|gb|AFY52202.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338409|gb|AFY52203.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338411|gb|AFY52204.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338413|gb|AFY52205.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338415|gb|AFY52206.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338417|gb|AFY52207.1| chlorophyll binding protein, partial [Clermontia clermontioides
subsp. clermontioides]
gi|427338419|gb|AFY52208.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338421|gb|AFY52209.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338423|gb|AFY52210.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338425|gb|AFY52211.1| chlorophyll binding protein, partial [Clermontia montis-loa]
gi|427338427|gb|AFY52212.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338429|gb|AFY52213.1| chlorophyll binding protein, partial [Clermontia calophylla]
gi|427338431|gb|AFY52214.1| chlorophyll binding protein, partial [Clermontia waimeae]
gi|427338433|gb|AFY52215.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338435|gb|AFY52216.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338437|gb|AFY52217.1| chlorophyll binding protein, partial [Clermontia parviflora]
gi|427338439|gb|AFY52218.1| chlorophyll binding protein, partial [Clermontia oblongifolia
subsp. oblongifolia]
gi|427338441|gb|AFY52219.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|427338443|gb|AFY52220.1| chlorophyll binding protein, partial [Clermontia peleana]
gi|427338445|gb|AFY52221.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338447|gb|AFY52222.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338449|gb|AFY52223.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338451|gb|AFY52224.1| chlorophyll binding protein, partial [Clermontia singuliflora]
gi|427338453|gb|AFY52225.1| chlorophyll binding protein, partial [Clermontia drepanomorpha]
gi|427338455|gb|AFY52226.1| chlorophyll binding protein, partial [Clermontia lindseyana]
gi|428230858|gb|AFY99051.1| chlorophyll binding protein, partial [Clermontia kakeana]
gi|428230860|gb|AFY99052.1| chlorophyll binding protein, partial [Clermontia arborescens subsp.
waihiae]
Length = 197
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 38/185 (20%)
Query: 77 GFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIP 121
GFDPLGL DP F+ KW E+ +GR+AM VG + A + +P
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVFNGRFAMLGAVGAIAPEIFGKLGLIPAETALP 59
Query: 122 WFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
WF+ G P A P++ L ++ LMG+ E +R D++NP S ++ +
Sbjct: 60 WFQTGVIPPAGSYTYWADPYT---LFVFEMALMGFAEHRRLQDWYNPGSMGKQY---FLG 113
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
+ FA +G+ YPGG FF+PL D + + LK+ EIK+ RLAM+A+L
Sbjct: 114 LEKGFA-GSGDPAYPGGPFFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAIL 163
Query: 236 IFYFE 240
++ +
Sbjct: 164 GYFIQ 168
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
D + PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+ D
Sbjct: 123 DPAYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLD 182
>gi|225447576|ref|XP_002271687.1| PREDICTED: chlorophyll a-b binding protein 151, chloroplastic
[Vitis vinifera]
gi|147794485|emb|CAN71610.1| hypothetical protein VITISV_000630 [Vitis vinifera]
Length = 265
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSKNGVK 124
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + S ++ Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPGG F DPL LA D + LKV EI
Sbjct: 183 EGLDAI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 36.6 bits (83), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDAIYPGG-AFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|262410738|gb|ACY66805.1| chlorophyll a/b-binding protein [Pinus massoniana]
Length = 274
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 75 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 134
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P + S ++ Q++LMG VE R
Sbjct: 135 GEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA-------- 186
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 187 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPDAFAELKVKEIK 224
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RL M +M F+ +A GK P+ L
Sbjct: 225 NGRLTMFSMFGFFVQAIVTGKGPIEDL 251
>gi|2570513|gb|AAB82142.1| chlorophyll a-b binding protein [Oryza sativa Indica Group]
Length = 263
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 88/205 (42%), Gaps = 50/205 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP RE E+IH RWAM +G F G
Sbjct: 63 TPSYLTGKFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCFFPEILSKNGVN 122
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AGA +P + P S ++ Q++LMG+VE R P
Sbjct: 123 FGEAVWFKAGAQIFSEGGLDYLGNPALVRPQSILAIWAVQVVLMGFVEGYRVGG--GPLG 180
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ + ++ YPGG FD L LA D + KV E
Sbjct: 181 EGL------------------DKVYPGGA-FDHLGLA---------EDPDTFAEFKVKEF 212
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPL 248
+ RLAM +ML F+ +A GK P+
Sbjct: 213 NNGRLAMFSMLGFFVQAIVTGKGPI 237
>gi|227139|prf||1615137B chlorophyll a/b binding protein P27
Length = 233
Score = 76.6 bits (187), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 34 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 93
Query: 122 ----WFEAGAD------------PGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA P I S ++ Q++LMG +E R
Sbjct: 94 GEAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGYRVA-------- 145
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D + LKV EIK
Sbjct: 146 ----GGPLGEVTDPI--------YPGGNF-DPLGLAD---------DPDAFAELKVKEIK 183
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 184 NGRLAMFSMFGFFVQAIVTGKGPIENL 210
>gi|145079801|tpg|DAA05936.1| TPA_inf: chloroplast light-harvesting complex protein CP26
precursor Lhcb5 [Micromonas sp. CCMP490]
Length = 333
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 97/204 (47%), Gaps = 28/204 (13%)
Query: 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMA 106
P ++ ++PA N P +++G+L GDYGFDPL LGKD + YR AE+ H RWAM
Sbjct: 111 PNRRLYLPAGLLDINTDVPSYMNGTLAGDYGFDPLQLGKD-GKIAQYRIAEVQHARWAML 169
Query: 107 AVVGIFVGQAWSGIP---WFEAGA---DPGAIAPFSFGS---LLGTQLLLMGWVESKRWV 157
AV G+ + +A G+P W E G D A P G+ ++ L+ VE R
Sbjct: 170 AVPGVVIPEAL-GVPGGNWTETGKVFLDGEAGRPEILGNPYLFTAIEVALLAGVEGYRSG 228
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDT-EKL 216
P FA G+ K DP+ G + D + + T E L
Sbjct: 229 KLEAPAG---------------FAPIYGKFEGKDFKGLDPINPGGPL-DFLNVASTPEDL 272
Query: 217 DRLKVAEIKHARLAMVAMLIFYFE 240
LKV EIK+ RLAM+AML + +
Sbjct: 273 AILKVKEIKNGRLAMIAMLGVFVQ 296
>gi|115797|sp|P27520.1|CB215_PEA RecName: Full=Chlorophyll a-b binding protein 215, chloroplastic;
AltName: Full=LHCII type II CAB-215; Short=LHCP; Flags:
Precursor
gi|20658|emb|CAA40365.1| chlorophyll a/b-binding protein [Pisum sativum]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG+VE R P +
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ YPGG F DPL LA D + LKV E+K
Sbjct: 184 GLDPL------------------YPGGAF-DPLGLAD---------DPDSFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNL 242
>gi|9587203|gb|AAF89205.1|AF279248_1 LHCII type II chlorophyll a/b-binding protein [Vigna radiata]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +GI G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGIVFPEILEKNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AGA +P I S ++ Q++LMG+VE R P +
Sbjct: 126 GEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ YPGG F DPL LA D + LKV E+K
Sbjct: 184 GLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM ++ F+ +A GK P+ L
Sbjct: 216 NGRLAMFSVFGFFVQAIVTGKGPIQNL 242
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + EL +GR AM +V G FV
Sbjct: 177 GGGPL--GEGLDPIYPGG-AFDPLGLADDPDAFAELKVKELKNGRLAMFSVFGFFV 229
>gi|56809381|gb|AAW31512.1| light-harvesting chlorophyll-a/b binding protein Lhcb2 [Pisum
sativum]
Length = 265
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP RE E+IH RWAM +G G +
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCTFPELLEKNGVKF 125
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ TQ++LMG+VE R P +
Sbjct: 126 GEAVWFKAGSQIFAEGGLDYLGNPNLIHAQSILAIWATQVVLMGFVEGYRVGG--GPLGE 183
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ YPGG F DPL LA D + LKV E+K
Sbjct: 184 GLDPL------------------YPGGAF-DPLGLAD---------DPDSFAELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIQNL 242
>gi|115808|sp|P04783.1|CB25_PETSP RecName: Full=Chlorophyll a-b binding protein 91R, chloroplastic;
AltName: Full=LHCII type I CAB-91R; Short=LHCP; Flags:
Precursor
gi|20487|emb|CAA26209.1| unnamed protein product [Petunia sp.]
Length = 267
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 88/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D L DP RE E+IH RWAM +G + A +G+
Sbjct: 68 PSYLTGEFPGDYGWDTAELSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKF 127
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 128 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVA-------- 179
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E LKV EIK
Sbjct: 180 ----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEIK 217
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 218 NGRLAMFSMFGFFVQAIVTGKGPLENL 244
>gi|145078792|tpg|DAA05884.1| TPA_inf: chloroplast light-harvesting complex I protein precursor
Lhca3 [Euglena gracilis]
Length = 295
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 100/235 (42%), Gaps = 53/235 (22%)
Query: 18 INGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYG 77
++G + Q ++G+ R S + A++ + W P N+ P +L G PGD G
Sbjct: 56 VSGSTRGQ--VSGSTRGQRSASTRGSASVEERLLWFP------NVTPPAYLTGEFPGDRG 107
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSF 137
FDP GL DP R AE+IHGR AM AVVG V WFEA AIA
Sbjct: 108 FDPAGLSADPETFDRMRIAEIIHGRVAMLAVVGALVPDFLGKGNWFEA----PAIAGIDI 163
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
G + Q ++G+ E+ ++++ A YPG FDP
Sbjct: 164 GDV---QQFILGY--------------GVFEFGRGLNKSSNPAAI------YPG---FDP 197
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
L L D K AEIK+ RLA+ AML F + G +PL L
Sbjct: 198 LNLTS--------------DYTKEAEIKNGRLALTAMLGFEVQRHVVGGSPLANL 238
>gi|428230864|gb|AFY99054.1| chlorophyll binding protein, partial [Cyanea asplenifolia]
Length = 197
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 89/185 (48%), Gaps = 38/185 (20%)
Query: 77 GFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGIFVGQ---------AWSGIP 121
GFDPLGL DP F+ KW E+I+GR+AM G + A + +P
Sbjct: 1 GFDPLGL-SDPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEIFGKLGLIPAETALP 59
Query: 122 WFEAGADPGA------IAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSR 175
WF+ G P A P++ L ++ LMG+ E +R+ D++NP S ++
Sbjct: 60 WFQTGVIPPAGSYTYWADPYT---LFVFEMALMGFAEHRRFQDWYNPGSMGKQYFL---- 112
Query: 176 TAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235
E +G YPGG FF+PL D + + LK+ EIK+ RLAM+A+L
Sbjct: 113 GLEKGLAGSGNPAYPGGPFFNPLGFG---------KDEKSMKELKLKEIKNGRLAMLAIL 163
Query: 236 IFYFE 240
++ +
Sbjct: 164 GYFIQ 168
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+ PG F+PLG GKD +K + E+ +GR AM A++G F+ +G+ F+ D
Sbjct: 125 AYPGGPFFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQGLVTGVGPFQNLLD 182
>gi|1262847|gb|AAB19040.1| type 2 light-harvesting chlorophyll a/b-binding polypeptide,
partial [Pinus palustris]
Length = 246
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 46 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLAKNGVK 105
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ Q++LMG +E R
Sbjct: 106 FGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYR--------- 156
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV EI
Sbjct: 157 ---VGGGPLGEGLDPL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEI 195
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 196 KNGRLAMFSMFGFFVQAIVTGKGPIENL 223
>gi|15224471|ref|NP_178585.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
gi|4874296|gb|AAD31358.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15450349|gb|AAK96468.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|15450494|gb|AAK96540.1| At2g05100/F15L11.2 [Arabidopsis thaliana]
gi|25054901|gb|AAN71932.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250800|gb|AEC05894.1| photosystem II light harvesting complex protein 2.1 [Arabidopsis
thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 66 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG++E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRI--------- 176
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 177 ---GGGPLGEGLDPL--------YPGGAF-DPLNLA---------EDPEAFSELKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|4741944|gb|AAD28769.1|AF134122_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ Q++LMG++E R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRI-------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 177 ----GGGPLGEGLDPL--------YPGGAF-DPLNLA---------EDPEAFSELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|351724927|ref|NP_001235283.1| chlorophyll a/b-binding protein [Glycine max]
gi|1053216|gb|AAA80688.1| chlorophyll a/b-binding protein [Glycine max]
Length = 263
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 86/207 (41%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQAW 117
P +L G PGDYG+D GL DP E E+IH RWAM +G G +
Sbjct: 64 PSYLTGEFPGDYGWDTAGLSADPETFARNPELEVIHSRWAMLGALGCVFPELLSRNGVKF 123
Query: 118 SGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 124 GEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA-------- 175
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG F DPL LA D E LKV E+K
Sbjct: 176 ----GGPLGEVTDPI--------YPGGSF-DPLGLAD---------DPEAFAELKVKELK 213
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 214 NGRLAMFSMFGFFVQAIVTGKGPLENL 240
>gi|162463409|ref|NP_001105545.1| chlorophyll a-b binding protein M9, chloroplastic precursor [Zea
mays]
gi|115815|sp|P27497.1|CB29_MAIZE RecName: Full=Chlorophyll a-b binding protein M9, chloroplastic;
AltName: Full=LHCII type I CAB-M9; Short=LHCP; Flags:
Precursor
gi|22355|emb|CAA39376.1| light-harvesting chlorophyll a/b binding protein [Zea mays]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 89/207 (42%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 66 PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKF 125
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG +E R
Sbjct: 126 GEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGYRVA-------- 177
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
P + YPGG FDPL LA D E +KV E+K
Sbjct: 178 ----GGPLGEVVDPL--------YPGGT-FDPLGLAD---------DPEAFADVKVKELK 215
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK PL L
Sbjct: 216 NGRLAMFSMFGFFVQAIVTGKGPLENL 242
>gi|15232249|ref|NP_189406.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
gi|4741950|gb|AAD28772.1|AF134125_1 Lhcb2 protein [Arabidopsis thaliana]
gi|13899125|gb|AAK48984.1|AF370557_1 light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|9294474|dbj|BAB02693.1| light harvesting chlorophyll a/b-binding protein [Arabidopsis
thaliana]
gi|30023746|gb|AAP13406.1| At3g27700 [Arabidopsis thaliana]
gi|332643831|gb|AEE77352.1| photosystem II light harvesting complex protein 2.3 [Arabidopsis
thaliana]
Length = 266
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 91/207 (43%), Gaps = 50/207 (24%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP- 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 67 PSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVKF 126
Query: 122 ----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQ 165
WF+AG+ +P I S ++ Q++LMG++E R P +
Sbjct: 127 GEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGG--GPLGE 184
Query: 166 SVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225
++ YPGG F DPL LA D E LKV E+K
Sbjct: 185 GLDPL------------------YPGGAF-DPLNLA---------EDPEAFSELKVKELK 216
Query: 226 HARLAMVAMLIFYFEA-GQGKTPLGAL 251
+ RLAM +M F+ +A GK P+ L
Sbjct: 217 NGRLAMFSMFGFFVQAIVTGKGPIENL 243
>gi|4741948|gb|AAD28771.1|AF134124_1 Lhcb2 protein [Arabidopsis thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ Q++LMG++E R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRI-------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 177 ----GGGPLGEGLDPL--------YPGGAF-DPLNLA---------EDPEAFSELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|2765356|emb|CAA74179.1| chlorophyll a/b-binding protein [Beta vulgaris subsp. vulgaris]
Length = 264
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 64 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVK 123
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ +Q++LMG +E R
Sbjct: 124 FGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYR--------- 174
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 175 ---VGGGPLGEGLDKL--------YPGGAF-DPLGLAD---------DPEAFAELKVKEL 213
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 214 KNGRLAMFSMFGFFVQAIVTGKGPIENL 241
>gi|15224465|ref|NP_178582.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
gi|4741946|gb|AAD28770.1|AF134123_1 Lhcb2 protein [Arabidopsis thaliana]
gi|4585935|gb|AAD25595.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|15809901|gb|AAL06878.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|17064974|gb|AAL32641.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|17978863|gb|AAL47403.1| At2g05070/F1O13.20 [Arabidopsis thaliana]
gi|20260048|gb|AAM13371.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|330250799|gb|AEC05893.1| photosystem II light harvesting complex protein 2.2 [Arabidopsis
thaliana]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 89/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--GIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + S G+
Sbjct: 65 TPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P I S ++ Q++LMG++E R
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRI-------- 176
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG F DPL LA D E LKV E+
Sbjct: 177 ----GGGPLGEGLDPL--------YPGGAF-DPLNLA---------EDPEAFSELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
>gi|511153|emb|CAA84525.1| chlorophyll a,b binding protein type I [Solanum tuberosum]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
P +L G PGDYG+D GL DP E E+IH RWAM +G G
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFARNLELEVIHCRWAMLGALGCVFPEILSKNGVT 124
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P I S ++ +Q++LMG+VE R P
Sbjct: 125 FGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ + YPGG F DPL LA D E LKV EI
Sbjct: 183 EGLD------------------KIYPGGAF-DPLGLA---------DDPEAFAELKVKEI 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPIENL 242
Score = 37.0 bits (84), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 58 GGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV 113
GGG L E LD PG FDPLGL DP + E+ +GR AM ++ G FV
Sbjct: 177 GGGPL--GEGLDKIYPGG-AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV 229
>gi|224064850|ref|XP_002301582.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
gi|118486872|gb|ABK95270.1| unknown [Populus trichocarpa]
gi|118488008|gb|ABK95825.1| unknown [Populus trichocarpa]
gi|222843308|gb|EEE80855.1| light-harvesting complex II protein Lhcb2 [Populus trichocarpa]
Length = 265
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 93/208 (44%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 65 TPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILAKNGVK 124
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AGA +P I S ++ +Q++LMG+VE R P
Sbjct: 125 FGESVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWASQVVLMGFVEGYRVGG--GPLG 182
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
+ ++ YPGG F DPL LA D + LKV E+
Sbjct: 183 EGLDPI------------------YPGGAF-DPLGLAD---------DPDAFAELKVKEL 214
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK P+ L
Sbjct: 215 KNGRLAMFSMFGFFVQAIVTGKGPVENL 242
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.137 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,634,022,766
Number of Sequences: 23463169
Number of extensions: 215476043
Number of successful extensions: 446025
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1389
Number of HSP's successfully gapped in prelim test: 337
Number of HSP's that attempted gapping in prelim test: 440185
Number of HSP's gapped (non-prelim): 3375
length of query: 253
length of database: 8,064,228,071
effective HSP length: 139
effective length of query: 114
effective length of database: 9,097,814,876
effective search space: 1037150895864
effective search space used: 1037150895864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 75 (33.5 bits)