BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025421
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WSC|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSE|2 Chain 2, Improved Model Of Plant Photosystem I
pdb|2WSF|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 269
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 79/236 (33%), Positives = 111/236 (47%), Gaps = 30/236 (12%)
Query: 11 NGLGSSFINGGKKSQALLAGTNRVTXXXXXXXXXXLPPKKSWIPAVKGGGNLINPEWLDG 70
+G +F+ K + A +RV P + W P P WLDG
Sbjct: 27 SGTSKAFLGRKLKVNSSTASPSRVRSTSTVCTVAE-PDRPLWFPGS------TPPPWLDG 79
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFE 124
SLPGD+GFDPLGLG DP L+W +AEL+H RWAM GIF+ + + + W+
Sbjct: 80 SLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYT 139
Query: 125 AGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANAT 184
AG +L +L+ +GW E +RW D NP + + P N
Sbjct: 140 AGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTG 190
Query: 185 GEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
+ GYPGG +FDPL G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 191 TDVGYPGGLWFDPL--------GWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 238
Score = 35.4 bits (80), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G
Sbjct: 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTG 243
>pdb|2O01|2 Chain 2, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 186
Score = 116 bits (291), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 69/182 (37%), Positives = 95/182 (52%), Gaps = 23/182 (12%)
Query: 65 PEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI---- 120
PEWLDGSLPGD+GFDPLGL DP L+W +AEL+H RWAM GIF+ + + +
Sbjct: 1 PEWLDGSLPGDFGFDPLGLSSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILN 60
Query: 121 --PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 178
W+ AG +L +L+ +GW E +RW D NP + + P
Sbjct: 61 TPSWYTAGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------ 111
Query: 179 NFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238
N + GYPGG +FDPL +KL L+ EIK+ RLAM+A++ +
Sbjct: 112 NNKLTGTDVGYPGGLWFDPLGWGSA--------SPQKLKELRTKEIKNGRLAMLAVMGAW 163
Query: 239 FE 240
F+
Sbjct: 164 FQ 165
Score = 35.4 bits (80), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G F
Sbjct: 119 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 178
Query: 124 EAGADPG 130
ADPG
Sbjct: 179 AHLADPG 185
>pdb|3PL9|A Chain A, Crystal Structure Of Spinach Minor Light-Harvesting
Complex Cp29 At 2.80 Angstrom Resolution
Length = 243
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/249 (33%), Positives = 106/249 (42%), Gaps = 91/249 (36%)
Query: 52 WIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKW------------------- 92
W P K PE+LDGSL GDYGFDP GLGK +L++
Sbjct: 14 WYPGAKA------PEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIG 67
Query: 93 ------------------------YREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128
+RE ELIHGRWAM A +G + +GI W +AG
Sbjct: 68 TRTESADVKSTSLQPYSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKV 127
Query: 129 P--------GAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENF 180
G PFS +L+ ++L++G++E +R N
Sbjct: 128 ELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR-----------------------NA 164
Query: 181 ANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
T ++ YPGG FDPL LA D EK L++AEIKHARLAMV L F +
Sbjct: 165 ELDTEKRLYPGGT-FDPLGLAS---------DPEKKPILQLAEIKHARLAMVGFLGFAVQ 214
Query: 241 AG-QGKTPL 248
A GK PL
Sbjct: 215 AAVTGKGPL 223
>pdb|2WSC|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSE|1 Chain 1, Improved Model Of Plant Photosystem I
pdb|2WSF|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 241
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 54 RPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 113
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 114 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 166
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +KL+ LKV EIK+ RLA++
Sbjct: 167 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALL 200
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 201 AFVGFCVQ 208
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP L+ + E+ +GR A+ A VG V Q+
Sbjct: 172 FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQS 210
>pdb|2WSC|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSE|4 Chain 4, Improved Model Of Plant Photosystem I
pdb|2WSF|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 251
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/210 (34%), Positives = 105/210 (50%), Gaps = 37/210 (17%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K W+P L +P +L GSLPGD GFDPLGL +DP L+W+ +AEL++GRWAM V
Sbjct: 53 KGEWLPG------LASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGV 106
Query: 109 VGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP 162
G+ + + ++ I W+ AG + S +L + +L +VE +RW D NP
Sbjct: 107 AGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTLFVIEFILSHYVEIRRWQDIKNP 163
Query: 163 ESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVA 222
S + + + ++ GE GYPGG F+PL A T++ K
Sbjct: 164 GSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNFAPTLEA-------------KEK 203
Query: 223 EIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
EI + RL M+A L F + GK P L
Sbjct: 204 EIANGRL-MLAFLGFIIQHNVTGKGPFDNL 232
>pdb|2O01|1 Chain 1, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 187
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/188 (37%), Positives = 98/188 (52%), Gaps = 44/188 (23%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWF 123
P +LDGS PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W
Sbjct: 6 RPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWV 65
Query: 124 EA---GADPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATP 172
+A A PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 66 KAQEWAALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------ 118
Query: 173 WSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232
YPGG FDPL Y D +KL+ LKV EIK+ RLA++
Sbjct: 119 ----------------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALL 152
Query: 233 AMLIFYFE 240
A + F +
Sbjct: 153 AFVGFCVQ 160
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP L+ + E+ +GR A+ A VG V Q+
Sbjct: 124 FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQS 162
>pdb|2WSC|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSE|3 Chain 3, Improved Model Of Plant Photosystem I
pdb|2WSF|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 276
Score = 94.0 bits (232), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 102/195 (52%), Gaps = 34/195 (17%)
Query: 66 EWLDGSLPGDYGFDPLGLGKDP----AFL--KWYREAELIHGRWAMAAVVGI----FVGQ 115
+LDGSLPGDYGFDPLGL DP F+ KW E+I+GR+AM VG +G+
Sbjct: 67 SYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGK 125
Query: 116 A-----WSGIPWFEAGADPGAIAPFSF----GSLLGTQLLLMGWVESKRWVDFFNPESQS 166
A + +PWF G P A +++ +L ++ LMG+ E +R+ D+ P S
Sbjct: 126 AGLIPQETALPWFRTGFIPPA-GTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMG 184
Query: 167 VEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKH 226
++ E +GE YPGG FF+PL D + L LK+ E+K+
Sbjct: 185 KQYFL----GLEKGLGGSGEPAYPGGPFFNPLGFG---------KDEKSLKDLKLKEVKN 231
Query: 227 ARLAMVAMLIFYFEA 241
RLAM+A+L ++ +A
Sbjct: 232 GRLAMLAILGYFVQA 246
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 73 PGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
PG F+PLG GKD LK + E+ +GR AM A++G FV +G+
Sbjct: 204 PGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGV 251
>pdb|3LW5|1 Chain 1, Improved Model Of Plant Photosystem I
Length = 170
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 93/181 (51%), Gaps = 44/181 (24%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA---GA 127
S PGD+GFDPLGLG+ PA L+ Y+E+ELIH RWAM AV GI V +A W +A A
Sbjct: 1 SAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEWAA 60
Query: 128 DPGAIAPF--------SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAEN 179
PG A + + ++L + L + +VE +R ++ +PE +
Sbjct: 61 LPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-KDPEKKK------------- 106
Query: 180 FANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYF 239
YPGG FDPL Y D +KL+ LKV EIK+ RLA++A + F
Sbjct: 107 ---------YPGGA-FDPLG---------YSKDPKKLEELKVKEIKNGRLALLAFVGFCV 147
Query: 240 E 240
+
Sbjct: 148 Q 148
Score = 36.2 bits (82), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 78 FDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 116
FDPLG KDP L+ + E+ +GR A+ A VG V Q+
Sbjct: 112 FDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQS 150
>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
Protein Complex From Pea Thylakoid Membranes
Length = 232
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVK 91
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|B Chain B, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
pdb|2BHW|C Chain C, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
Length = 232
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/208 (32%), Positives = 88/208 (42%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFV-------GQA 116
+P +L G PGDYG+D GL DP RE E+IH RWAM +G G
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVK 91
Query: 117 WSGIPWFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
+ WF+AG+ +P + S ++ TQ++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV E+
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEL 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>pdb|3LW5|2 Chain 2, Improved Model Of Plant Photosystem I
Length = 176
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 23/162 (14%)
Query: 85 KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFG 138
DP L+W +AEL+H RWAM GIF+ + + + W+ AG
Sbjct: 1 SDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNTPSWYTAGEQEYFT---DTT 57
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
+L +L+ +GW E +RW D NP + + P N + GYPGG +FDPL
Sbjct: 58 TLFIVELVFIGWAEGRRWADILNPGCVNTDPIFP------NNKLTGTDVGYPGGLWFDPL 111
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
G +KL L+ EIK+ RLAM+A++ +F+
Sbjct: 112 --------GWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQ 145
Score = 37.0 bits (84), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----PWF 123
D PG FDPLG G P LK R E+ +GR AM AV+G + ++G F
Sbjct: 99 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 158
Query: 124 EAGADPGAIAPFS 136
ADPG F+
Sbjct: 159 AHLADPGHATIFA 171
>pdb|1RWT|A Chain A, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|B Chain B, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|C Chain C, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|D Chain D, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|E Chain E, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|F Chain F, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|G Chain G, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|H Chain H, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|I Chain I, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
pdb|1RWT|J Chain J, Crystal Structure Of Spinach Major Light-harvesting
Complex At 2.72 Angstrom Resolution
Length = 232
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/208 (33%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ--AWSGIP 121
+P +L G PGDYG+D GL DP RE E+IH RWAM +G + A +G+
Sbjct: 32 SPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVK 91
Query: 122 -----WFEAGA------------DPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPES 164
WF+AG+ +P + S ++ Q++LMG VE R
Sbjct: 92 FGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGYRIA------- 144
Query: 165 QSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEI 224
P + YPGG FDPL LA D E LKV EI
Sbjct: 145 -----GGPLGEVVDPL--------YPGGS-FDPLGLAD---------DPEAFAELKVKEI 181
Query: 225 KHARLAMVAMLIFYFEA-GQGKTPLGAL 251
K+ RLAM +M F+ +A GK PL L
Sbjct: 182 KNGRLAMFSMFGFFVQAIVTGKGPLENL 209
>pdb|2O01|4 Chain 4, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 82/172 (47%), Gaps = 30/172 (17%)
Query: 87 PAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSL 140
P L+W+ +AEL++GRWAM V G+ + + ++ I W+ AG + S +L
Sbjct: 1 PENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---SSSTL 57
Query: 141 LGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCL 200
+ +L +VE +RW D NP S + + + ++ GE GYPGG F+PL
Sbjct: 58 FVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFNPLNF 110
Query: 201 AGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
A T++ K EI + RLAM+A L F + GK P L
Sbjct: 111 APTLEA-------------KEKEIANGRLAMLAFLGFIIQHNVTGKGPFDNL 149
>pdb|3LW5|4 Chain 4, Improved Model Of Plant Photosystem I
Length = 166
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 84/176 (47%), Gaps = 31/176 (17%)
Query: 83 LGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFS 136
L +DP L+W+ +AEL++GRWAM V G+ + + ++ I W+ AG + S
Sbjct: 1 LAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFA---S 57
Query: 137 FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFD 196
+L + +L +VE +RW D NP S + + + ++ GE GYPGG F+
Sbjct: 58 SSTLFVIEFILSHYVEIRRWQDIKNPGSVNQD------PIFKQYSLPAGEVGYPGG-IFN 110
Query: 197 PLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG-QGKTPLGAL 251
PL A T++ K EI + RL M+A L F + GK P L
Sbjct: 111 PLNFAPTLEA-------------KEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNL 152
>pdb|2O01|3 Chain 3, The Structure Of A Plant Photosystem I Supercomplex At 3.4
Angstrom Resolution
Length = 165
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 77/162 (47%), Gaps = 27/162 (16%)
Query: 92 WYREAELIHGRWAMAAVVGIFVGQ---------AWSGIPWFEAGADPGAIAPFSF----G 138
W E+I+GR+AM G + A + +PWF+ G P A +++
Sbjct: 1 WLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPA-GTYTYWADNY 59
Query: 139 SLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPL 198
+L ++ LMG+ E +R D++NP S ++ E +G YPGG FF+PL
Sbjct: 60 TLFVLEMALMGFAEHRRLQDWYNPGSMGKQYFL----GLEKGLAGSGNPAYPGGPFFNPL 115
Query: 199 CLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 116 GFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 148
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120
+ PG F+PLG GKD LK + E+ +GR AM A++G F+ +G+
Sbjct: 105 AYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGV 154
>pdb|3LW5|3 Chain 3, Improved Model Of Plant Photosystem I
Length = 172
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 27/163 (16%)
Query: 91 KWYREAELIHGRWAMAAVVGI----FVGQA-----WSGIPWFEAGADPGAIAPFSF---- 137
+W E+I+GR+AM VG ++G+ + + WF+ G P A +++
Sbjct: 13 RWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGVIPPA-GTYNYWADN 71
Query: 138 GSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197
+L ++ LMG+ E +R+ D+ P S ++ E +G YPGG FF+P
Sbjct: 72 YTLFVLEMALMGFAEHRRFQDWAKPGSMGKQYFL----GLEKGFGGSGNPAYPGGPFFNP 127
Query: 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFE 240
L D + L LK+ E+K+ RLAM+A+L ++ +
Sbjct: 128 LGFG---------KDEKSLKELKLKEVKNGRLAMLAILGYFIQ 161
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV 108
K+ ++ KG G NP + PG F+PLG GKD LK + E+ +GR AM A+
Sbjct: 101 KQYFLGLEKGFGGSGNPAY-----PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAI 155
Query: 109 VGIFVGQAWSGI 120
+G F+ +G+
Sbjct: 156 LGYFIQGLVTGV 167
>pdb|3MVG|A Chain A, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
pdb|3MVG|B Chain B, Native Structure Of Irip, A Type I Ribosome Inactivating
Protein From Iris Hollandica Var. At 1.25 A
Length = 275
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 158 DFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEK 215
D F P ++ T W + T Q GG+F P+ L +++ V I D EK
Sbjct: 186 DNFRPRVGIIDLQTNWQTLS------TEVQRAEGGRFLQPVKLQVSVQQTVVISDVEK 237
>pdb|2HLF|A Chain A, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|B Chain B, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
Length = 444
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 310 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 353
>pdb|4ENE|A Chain A, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|B Chain B, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 446
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 311 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 354
>pdb|2EXY|A Chain A, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|B Chain B, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|1KPK|A Chain A, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|B Chain B, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|C Chain C, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|D Chain D, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|E Chain E, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|1KPK|F Chain F, Crystal Structure Of The Clc Chloride Channel From E. Coli
pdb|2EXW|A Chain A, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|B Chain B, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|3EJZ|A Chain A, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|B Chain B, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|3EJY|A Chain A, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|B Chain B, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2HT3|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2HT2|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2R9H|A Chain A, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|B Chain B, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
Length = 444
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 310 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 353
>pdb|2HTL|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
Length = 473
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|4FTP|A Chain A, Structure Of The E202y Mutant Of The Cl-H+ ANTIPORTER
CLC-Ec1 From E.Coli
Length = 465
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2FEC|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|A Chain A, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|B Chain B, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
Length = 465
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|1OTU|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
Length = 465
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2HTK|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
Length = 473
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|1OTS|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|2FEE|A Chain A, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|B Chain B, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2H2P|A Chain A, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|B Chain B, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
Length = 465
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|3DET|A Chain A, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|B Chain B, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
Length = 473
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2EZ0|A Chain A, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|B Chain B, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
Length = 473
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|1OTT|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|2H2S|A Chain A, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|B Chain B, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|4FG6|A Chain A, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|B Chain B, Structure Of Ecclc E148a Mutant In Glutamate
Length = 465
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|2HT4|A Chain A, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|B Chain B, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
Length = 473
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
>pdb|3NMO|A Chain A, Crystal Structure Of An Engineered Monomeric Clc-Ec1 Cl-H+
Transporter
Length = 465
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 101 GRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP-FSFGSLLGT 143
G ++M +V IFV + + + F +GA G AP + G++LGT
Sbjct: 326 GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGT 369
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,589,597
Number of Sequences: 62578
Number of extensions: 393741
Number of successful extensions: 772
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 702
Number of HSP's gapped (non-prelim): 51
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)