Query 025421
Match_columns 253
No_of_seqs 235 out of 1150
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:37:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025421.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025421hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00170 photosystem II light- 100.0 4E-74 8.7E-79 514.1 19.6 253 1-253 1-255 (255)
2 PLN00098 light-harvesting comp 100.0 4.3E-59 9.2E-64 420.3 17.5 228 1-251 1-248 (267)
3 PLN00097 photosystem I light h 100.0 4.7E-58 1E-62 408.6 17.3 224 1-252 1-231 (244)
4 PLN00101 Photosystem I light-h 100.0 1.1E-56 2.3E-61 401.4 15.9 222 1-252 1-234 (250)
5 PLN00187 photosystem II light- 100.0 5.2E-53 1.1E-57 383.4 16.0 169 46-252 49-269 (286)
6 PLN00147 light-harvesting comp 100.0 3.1E-52 6.7E-57 373.3 15.9 188 44-252 40-234 (252)
7 PLN00048 photosystem I light h 100.0 9.5E-52 2.1E-56 372.2 14.1 186 47-252 40-244 (262)
8 PLN00100 light-harvesting comp 100.0 1.4E-51 3.1E-56 366.9 13.4 173 35-252 21-194 (246)
9 PLN00099 light-harvesting comp 100.0 3.1E-50 6.6E-55 359.1 15.3 167 47-252 42-221 (243)
10 PLN00025 photosystem II light 100.0 2.1E-49 4.6E-54 356.6 16.2 172 47-252 49-240 (262)
11 PLN00171 photosystem light-ha 100.0 7.7E-48 1.7E-52 353.4 14.9 179 46-251 105-306 (324)
12 PF00504 Chloroa_b-bind: Chlor 100.0 3.2E-40 6.9E-45 276.4 14.9 151 64-241 1-155 (156)
13 PLN00089 fucoxanthin-chlorophy 100.0 8.8E-39 1.9E-43 280.4 14.1 156 64-249 46-208 (209)
14 PLN00120 fucoxanthin-chlorophy 100.0 2.9E-33 6.3E-38 244.5 13.7 139 78-248 47-198 (202)
15 PLN00147 light-harvesting comp 99.5 5.1E-15 1.1E-19 133.4 5.5 56 66-121 173-228 (252)
16 PLN00101 Photosystem I light-h 99.5 1.8E-14 4E-19 129.6 6.0 55 186-249 67-122 (250)
17 PLN00089 fucoxanthin-chlorophy 99.5 1.7E-14 3.7E-19 127.0 5.7 53 70-122 153-206 (209)
18 PLN00048 photosystem I light h 99.5 2.1E-14 4.5E-19 130.1 5.7 52 69-120 186-237 (262)
19 PLN00098 light-harvesting comp 99.5 3.5E-14 7.5E-19 128.9 6.1 56 186-250 76-132 (267)
20 PLN00170 photosystem II light- 99.5 4.8E-14 1E-18 127.1 6.4 72 153-246 51-123 (255)
21 PLN00025 photosystem II light 99.4 8.6E-14 1.9E-18 126.0 4.9 52 69-121 183-234 (262)
22 PLN00187 photosystem II light- 99.4 1.3E-13 2.9E-18 126.0 4.9 52 69-120 211-262 (286)
23 PLN00097 photosystem I light h 99.4 1.7E-13 3.6E-18 123.0 5.0 72 48-120 145-224 (244)
24 PLN00099 light-harvesting comp 99.4 3.1E-13 6.6E-18 121.4 4.9 51 69-120 163-214 (243)
25 PLN00100 light-harvesting comp 99.3 7.8E-13 1.7E-17 118.6 5.1 48 186-242 49-96 (246)
26 PLN00171 photosystem light-ha 99.3 1E-12 2.2E-17 121.8 5.0 50 72-121 252-301 (324)
27 PF00504 Chloroa_b-bind: Chlor 99.3 7.9E-13 1.7E-17 110.7 3.7 49 67-115 107-155 (156)
28 PLN00120 fucoxanthin-chlorophy 99.2 1.2E-11 2.6E-16 108.5 5.2 51 70-120 142-195 (202)
29 PHA02337 putative high light i 97.7 2.8E-05 6E-10 50.0 2.1 27 94-120 3-29 (35)
30 PHA02337 putative high light i 97.7 3.8E-05 8.2E-10 49.3 2.7 26 221-246 4-30 (35)
31 PLN00084 photosystem II subuni 97.7 2.5E-05 5.3E-10 66.9 2.3 40 214-253 130-171 (214)
32 PLN00014 light-harvesting-like 96.8 0.00056 1.2E-08 61.2 1.3 33 220-252 160-193 (250)
33 PLN00014 light-harvesting-like 96.3 0.003 6.5E-08 56.6 3.1 30 93-122 159-188 (250)
34 PLN00084 photosystem II subuni 94.1 0.029 6.3E-07 48.4 1.9 33 88-120 130-163 (214)
35 KOG0593 Predicted protein kina 36.3 25 0.00054 33.7 2.1 38 86-124 160-203 (396)
36 PLN02449 ferrochelatase 26.5 44 0.00095 33.4 2.1 21 229-249 463-484 (485)
No 1
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=100.00 E-value=4e-74 Score=514.09 Aligned_cols=253 Identities=89% Similarity=1.478 Sum_probs=229.7
Q ss_pred CcccchhhhhcccCccccCCCcchhhhhhcCcc-ccccCcceeE-ecCCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCc
Q 025421 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNR-VTSSKKSVVV-AALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGF 78 (253)
Q Consensus 1 ma~~~~~~~l~g~~s~f~~g~~~~~~~~~~~~~-~~~~r~~~~v-~~aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gf 78 (253)
||||+|+|+|++++|+|++|++|+.+...+..+ .+++|+..++ +++++|++|+|..++++++.+|+||||++|||+||
T Consensus 1 ma~s~s~a~~~~~~ssf~~g~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~~k~w~p~~~~~~~~~~P~~l~g~~PGd~GF 80 (255)
T PLN00170 1 SAAATSGAVLNGLGSSFLTGGKRSLALLVGTGAAKVGARTLLVVAAAAQPKKSWIPAVKGGGNLVDPEWLDGSLPGDYGF 80 (255)
T ss_pred CchhhhHHHHhhccCcccccchhhhcccccccccccccceeEEEEeccCCCccccCCCCCCcccCCcccccccCCCCCCc
Confidence 999999999999999999999888655433323 3444444333 35578999999999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhhhc
Q 025421 79 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 158 (253)
Q Consensus 79 DPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~r~~~ 158 (253)
||+||++|+++++|||++||+||||||||++|++++|++++.+||++|..+..+.++++.+++++|+++||++|.+||.+
T Consensus 81 DPlgl~~d~e~~~~~r~~El~hGR~AMLa~~G~~v~e~l~g~~w~~aG~~~~~~~p~~~~~l~~~q~~lmg~~E~~R~~~ 160 (255)
T PLN00170 81 DPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 160 (255)
T ss_pred CccccCCCHHHHHHHHHHHhhccHHHHHHHHhhhhHHHccCCChhhCCccccccCccchHHHHHHHHHHhhhhhheeecc
Confidence 99999999999999999999999999999999999999999999999987766677777889999999999999999999
Q ss_pred ccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 025421 159 FFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFY 238 (253)
Q Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~ 238 (253)
+++|++++++|.+||+...++|.+.+++.+|||+.+||||||+++..+++|.+|+++++++|+||||||||||+|++||+
T Consensus 161 ~~~P~~~~~~~~~p~~~~~~~f~~~~g~~~yPGG~~FDPLGl~~~~~~~~~~~d~~~~~~lk~kEIKnGRLAMlA~lGf~ 240 (255)
T PLN00170 161 FFNPDSQSVEWATPWSRTAENFANATGLQGYPGGKFFDPLGLAGTVKDGVYIPDFEKLERLKLAEIKHARLAMVAMLIFY 240 (255)
T ss_pred ccCCcccccccccccccccccccccCCCcccCCCcccCccccccccccccccCCHHHHHHHHHHHHhhhHHHHHHHHhHh
Confidence 99999999999999998888999888999999998899999997667788888999999999999999999999999999
Q ss_pred HhccCCCCCCccCCC
Q 025421 239 FEAGQGKTPLGALGL 253 (253)
Q Consensus 239 ~q~~tG~~Pl~~l~~ 253 (253)
+|+.||++||+||+|
T Consensus 241 ~Qa~~g~~p~~~l~~ 255 (255)
T PLN00170 241 FEAGQGKTPLGALGL 255 (255)
T ss_pred eeeccCCCchhhhcC
Confidence 999999999999997
No 2
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=100.00 E-value=4.3e-59 Score=420.30 Aligned_cols=228 Identities=40% Similarity=0.735 Sum_probs=181.8
Q ss_pred CcccchhhhhcccCccccCCCcchhhhhhc----------Ccc-cccc-Ccce-eEecCCCCcCCCCcccCCCCCCCCCc
Q 025421 1 MAAATSGAVLNGLGSSFINGGKKSQALLAG----------TNR-VTSS-KKSV-VVAALPPKKSWIPAVKGGGNLINPEW 67 (253)
Q Consensus 1 ma~~~~~~~l~g~~s~f~~g~~~~~~~~~~----------~~~-~~~~-r~~~-~v~~aa~~~~w~~~~~~~G~~~~p~~ 67 (253)
||+++++++++++.+++.+++++++..... ... .++. +++. +..+.++|+.|+|+.+ +|+|
T Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~w~Pg~~------~P~~ 74 (267)
T PLN00098 1 MALAIASSALSSLTLSTRRVPQKALRRPIVASQSGTGGRMKVRLNATKGGVSSVCEPLPPDRPLWFPGSS------PPEW 74 (267)
T ss_pred CchhHhhHHHhhhcccccccccccccccccccccccccccccccccCCcccccccccCCCCccccCCCCC------CCcc
Confidence 999999999999999999876544322221 111 1111 1222 2233468999999874 8999
Q ss_pred CCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC------CCcCCCCCCCCCCccchhhHH
Q 025421 68 LDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLL 141 (253)
Q Consensus 68 l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~------pw~~ag~~~~~~~~~~~~~l~ 141 (253)
|||++|||+||||+||++|+++++|||++|||||||||||++|+++||++++. .||+++...+...+ .+++
T Consensus 75 LdG~~pGD~GFDPlgl~~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~~~w~~Ag~~~~~~~~---~~l~ 151 (267)
T PLN00098 75 LDGSLPGDFGFDPLGLGSDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIENFSWYDAGAREYFADP---TTLF 151 (267)
T ss_pred CCCCCCCCCCcCccccCCCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccccccccccchhhccCc---hHHH
Confidence 99999999999999999999999999999999999999999999999998643 58888765332222 3567
Q ss_pred HHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHH
Q 025421 142 GTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKV 221 (253)
Q Consensus 142 ~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~ 221 (253)
++|+++||++|.+||.++.+|++++.++..++. .....+++||||++||||||.+ +|+++++++|+
T Consensus 152 ~~q~~lmG~~E~~R~~~~~~~g~~~~~~~~~~~------~~~~~d~~yPGg~~FDPlgl~~--------~d~~~~~~~k~ 217 (267)
T PLN00098 152 VVQMVLMGWAEGRRWADLIKPGCVDIEPKLPNK------TNPKPDVGYPGGLWFDPMMWGR--------GSPEPVMVLRT 217 (267)
T ss_pred HHHHHHHHHHHHHHhhcccCCcccccccccccc------ccCCCCCCCCCCccCCcccCCC--------CCHHHHHHHHH
Confidence 789999999999999998888877666543322 1122367899999999999974 48999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhc-cCCCCCCccC
Q 025421 222 AEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251 (253)
Q Consensus 222 kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l 251 (253)
||||||||||+||+||++|+ +||++||+||
T Consensus 218 kEikNGRLAM~A~~G~~~q~~vTG~gPl~nL 248 (267)
T PLN00098 218 KEIKNGRLAMLAFVGFCFQAVYTGEGPIENL 248 (267)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhcCCChHHHH
Confidence 99999999999999999999 8999999998
No 3
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=100.00 E-value=4.7e-58 Score=408.63 Aligned_cols=224 Identities=34% Similarity=0.577 Sum_probs=178.7
Q ss_pred CcccchhhhhcccCccccCCCcchhhhhhcCccccccCcceeEecCCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccC
Q 025421 1 MAAATSGAVLNGLGSSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDP 80 (253)
Q Consensus 1 ma~~~~~~~l~g~~s~f~~g~~~~~~~~~~~~~~~~~r~~~~v~~aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDP 80 (253)
||+.+++++.+++.++..+...+.. .+.+ ...++..++.++++|+.|+|+. .+|+||||++|||+||||
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~R~~w~Pg~------~~P~~LdG~~pGD~GfDP 69 (244)
T PLN00097 1 MASIMAIQLAAGLKQKSRTVRPRGV----ASKA-RASRGPGAVAAAADRPTWLPGK------AAAAHLDGSLPCDYGFDP 69 (244)
T ss_pred CchhhhhhhHhhhhhhhhhcccccc----cccC-CCcceeeecccCCCCcccCCCC------CCccccCCCCCCCCCCCc
Confidence 8888888888888777653322110 1111 1112223334447899999986 489999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC------CCcCCCCCCCCCCccchhhHHHHHHHHHHHHHHh
Q 025421 81 LGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESK 154 (253)
Q Consensus 81 lgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~------pw~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~ 154 (253)
+||++|+++++|||++||+||||||||++|+++||++++. .||++++....+. ...+++.+|+++||++|.+
T Consensus 70 lGl~~~~~~~~~~r~aEl~hGR~AMLa~~G~lv~e~l~~~g~~~~p~W~~Ag~~~~~~~--~~~~l~~i~~~lmg~~E~~ 147 (244)
T PLN00097 70 LNLGADPEMLKWFVQAELMHARWAMLGLAGCVAPELLTKIGMADLPNWIDAAKWDGYWA--GAGPLFFIQMAMFNWAEIR 147 (244)
T ss_pred cccCcCHHHHHHHHHHHHhcchHHHHHHhhhhHHHHhcCCCcccCCccccCCcchhccc--cchhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998743 5999886531111 2357888999999999999
Q ss_pred hhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHH
Q 025421 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234 (253)
Q Consensus 155 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~ 234 (253)
||.++.+|+++..++.+++.. ....+|.+|||+. ||||||. +|+++++++|+||||||||||+|+
T Consensus 148 r~~~~~~pg~~~~~p~~~~~~-----~~~~~d~gYPgg~-FDPlgl~---------~d~~~~~~lk~kEiknGRLAM~A~ 212 (244)
T PLN00097 148 RWQDMKAPGSMNEDPLFGANK-----GDTNTDVGYPKGL-FDKFGWA---------KDEKKAAELKLKEIANGRLAMLAF 212 (244)
T ss_pred HhhcccCCCcccccccccccc-----CCcccccCCCCCC-CCccccC---------CCHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999887766544432 1124578999996 9999997 489999999999999999999999
Q ss_pred HHHHHhc-cCCCCCCccCC
Q 025421 235 LIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 235 ~Gf~~q~-~tG~~Pl~~l~ 252 (253)
+||++|+ +||++||+||.
T Consensus 213 ~G~~~q~~vTGkGPl~nL~ 231 (244)
T PLN00097 213 LGCCAQAIQTGTGPVDNLF 231 (244)
T ss_pred HHHhhhhhccCCCHHHHHH
Confidence 9999999 89999999983
No 4
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=100.00 E-value=1.1e-56 Score=401.41 Aligned_cols=222 Identities=36% Similarity=0.645 Sum_probs=168.8
Q ss_pred CcccchhhhhcccC-----ccccCCCcchhhhhhcCccccccCcceeEecCCCCcCCCCcccCCCCCCCCCcCCCCCCCC
Q 025421 1 MAAATSGAVLNGLG-----SSFINGGKKSQALLAGTNRVTSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGD 75 (253)
Q Consensus 1 ma~~~~~~~l~g~~-----s~f~~g~~~~~~~~~~~~~~~~~r~~~~v~~aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd 75 (253)
||..+..++.+++. +.|+.+.+++.+. ..+...+.+.+...+.+.++|+.|+|+.+ +|+||||++|||
T Consensus 1 ma~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~r~~W~P~~~------~P~~LdG~~PGD 73 (250)
T PLN00101 1 MATVTTQASAAVFRPCSSKSRFLSGSSSKLNR-ELSFKPMPSSATRSFKVEAKKGEWLPGLA------SPGYLNGSLPGD 73 (250)
T ss_pred Cchhhhhhhhcccccccccccccccccccccc-ccccccccccccccccccccccccCCCCC------CCcccCCCCCCc
Confidence 78877777776653 3454322222110 11111111111122333467899999874 899999999999
Q ss_pred cCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC------CCcCCCCCCCCCCccchhhHHHHHHHHHH
Q 025421 76 YGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMG 149 (253)
Q Consensus 76 ~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~------pw~~ag~~~~~~~~~~~~~l~~~ql~~~G 149 (253)
+||||+||++|+++++|+|++||+||||||||++|+++||++++. .||+++...+.. ...+++.+|+++||
T Consensus 74 ~GFDPlGl~~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~~p~w~~ag~~~~~~---~~~~l~~ie~~~mg 150 (250)
T PLN00101 74 NGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINAPQWYDAGKAEYFA---SSSTLFVIEFILFH 150 (250)
T ss_pred cCCCccccCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcCCCccccccchhhcc---cchHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999754 388887654321 23567888999999
Q ss_pred HHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHH
Q 025421 150 WVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARL 229 (253)
Q Consensus 150 ~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRL 229 (253)
++|++||.++.+|++++.++.+ .++....+|.+||||. ||||||++ + +++|+||||||||
T Consensus 151 ~~E~~R~~~~~~pG~~~~~~~~------~~~~~~~gd~~YPGG~-FDPLgl~~---------~----~~~k~kEIKNGRL 210 (250)
T PLN00101 151 YVEIRRWQDIKNPGSVNQDPIF------KQYSLPPNEVGYPGGI-FNPLNFAP---------T----EEAKEKELANGRL 210 (250)
T ss_pred HHHHHHhhcccCCCcccccccc------cccccCCccccCCCCc-cCccCCCc---------c----HHHHHHHHhhcch
Confidence 9999999999999887654322 2223345688999996 99999973 3 5889999999999
Q ss_pred HHHHHHHHHHhc-cCCCCCCccCC
Q 025421 230 AMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 230 AMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
||+||+||++|+ +||++||+||.
T Consensus 211 AM~A~lGf~~Q~~vTG~gPi~nL~ 234 (250)
T PLN00101 211 AMLAFLGFVVQHNVTGKGPFENLL 234 (250)
T ss_pred HHHHHhhHhheehccCCChHHHHH
Confidence 999999999999 89999999983
No 5
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=100.00 E-value=5.2e-53 Score=383.38 Aligned_cols=169 Identities=49% Similarity=0.877 Sum_probs=145.4
Q ss_pred CCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHH------------------------------------
Q 025421 46 LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF------------------------------------ 89 (253)
Q Consensus 46 aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~------------------------------------ 89 (253)
.++|+.|+|+. ++|+||||++||||||||+||++|||.
T Consensus 49 ~~~r~~w~p~~------~~P~~LdGslpGD~GfDplgL~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (286)
T PLN00187 49 GADRPLWFPGA------KAPEWLDGSLVGDYGFDPFGLGKPAEYLQFDLDSLDQNLAKNLAGDVIGTRTEASEIKSTPFQ 122 (286)
T ss_pred CCCccccCCCC------CCcccccCCCCCcCCCCcccccCChHhhhhcccchhhhhhhcccccccccccccccccccccC
Confidence 45799999986 489999999999999999999999986
Q ss_pred -------HHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCCCCCC------CC--CccchhhHHHHHHHHHHHHHHh
Q 025421 90 -------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPG------AI--APFSFGSLLGTQLLLMGWVESK 154 (253)
Q Consensus 90 -------~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag~~~~------~~--~~~~~~~l~~~ql~~~G~vE~~ 154 (253)
++||||+||+||||||||++||+++|+++|.+|+++|.... .. .++...+++++|+++||++|.+
T Consensus 123 p~~~~f~l~r~REaELiHGRwAMLAvaG~lvpEll~G~~W~~aG~~~~~~g~~y~g~~~p~~~~~l~~iqvllmG~~E~~ 202 (286)
T PLN00187 123 PYSEVFGLQRFRECELIHGRWAMLATLGALSVEALTGVTWQDAGKVELVDGSSYLGQPLPFSITTLIWIEVLVIGYIEFQ 202 (286)
T ss_pred cchhhhHHHHHHHHHhhhhHHHHHHhhchhhHHhccCCcccccccccccccccccccccchhHHHHHHHHHHHHHHHHhh
Confidence 69999999999999999999999999999999999886421 11 1223356788999999999999
Q ss_pred hhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHH
Q 025421 155 RWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAM 234 (253)
Q Consensus 155 r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~ 234 (253)
|+.+. . ..+..||||.+||||||. +|+++++++|++|||||||||+|+
T Consensus 203 R~~~~---~--------------------~~~~~yPGg~~FDPlGl~---------~d~e~~~~~k~kEIkNGRLAMlA~ 250 (286)
T PLN00187 203 RNAEL---D--------------------PEKRLYPGGKFFDPLGLA---------ADPEKKETLQLAEIKHARLAMVAF 250 (286)
T ss_pred hccCC---C--------------------CCCCCCCccccccccccC---------CCHHHHHHHHHHHHhhhHHHHHHH
Confidence 97531 0 125679999889999997 489999999999999999999999
Q ss_pred HHHHHhc-cCCCCCCccCC
Q 025421 235 LIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 235 ~Gf~~q~-~tG~~Pl~~l~ 252 (253)
+||++|+ +||++||+||.
T Consensus 251 lG~~vq~~vtg~GPi~nL~ 269 (286)
T PLN00187 251 LGFAVQAAATGKGPLNNWA 269 (286)
T ss_pred HHHHHHHHhcCCChHHHHH
Confidence 9999998 79999999984
No 6
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=100.00 E-value=3.1e-52 Score=373.35 Aligned_cols=188 Identities=46% Similarity=0.750 Sum_probs=155.1
Q ss_pred ecCCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC---
Q 025421 44 AALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI--- 120 (253)
Q Consensus 44 ~~aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~--- 120 (253)
.++++|+.|+|.. .+|+||||++|||+||||+||++|+++++|||++|||||||||||++|++++|+++..
T Consensus 40 ~~~~~R~~wlP~~------~~P~~Ldg~~pGD~GFDPlgl~~d~~~~~~~r~aElkhGR~AMlA~~G~l~~e~~~~~g~~ 113 (252)
T PLN00147 40 VVAQERPTWLPGL------DPPPHLDGTLAGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMAGVAGILFTDLLRVTGIR 113 (252)
T ss_pred cCCCCccccCCCC------CCCCcCCCCCCCccCCCcccccCCHHHHHHHHHHHhhccHHHHHHHhhhhHHHHhccCCCc
Confidence 4457899999987 4899999999999999999999999999999999999999999999999999998532
Q ss_pred ---CCcCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccc
Q 025421 121 ---PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197 (253)
Q Consensus 121 ---pw~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDP 197 (253)
.|++++.....+. +..+++++|+++||++|.+||.++.+|+++..++...... ... ...+++||||.+|||
T Consensus 114 ~~p~w~~ag~~~~~~~--~~~~~~~~q~~~mG~~E~~R~~~~~~pg~~~~~g~~~g~~--~~~--~~~~~~yPGd~~FDP 187 (252)
T PLN00147 114 NLPVWYEAGAVKFEFA--STRTLFVVQLLLMGFAETKRYMDFVSPGSQAKEGSFFGLE--AAL--EGLEPGYPGGPLFNP 187 (252)
T ss_pred CCcchhhcccchhccc--cchHHHHHHHHHHHHHHHHhhccccCCCcccccccccccc--ccc--cccCCCCcccccCCc
Confidence 3888775433221 2245677899999999999999999998766543221100 001 112578999999999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 198 Lgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
|||. +|+++++++|+||||||||||+|++||++|+ +||++|++||.
T Consensus 188 lGl~---------~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~Gp~~nL~ 234 (252)
T PLN00147 188 LGLA---------KDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTGPIDNLL 234 (252)
T ss_pred cccC---------CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9997 4899999999999999999999999999999 89999999984
No 7
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=100.00 E-value=9.5e-52 Score=372.24 Aligned_cols=186 Identities=34% Similarity=0.671 Sum_probs=151.7
Q ss_pred CCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHH------HHHHHHHHHHhhcchhHhHHHHHHhhhhccC-
Q 025421 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPA------FLKWYREAELIHGRWAMAAVVGIFVGQAWSG- 119 (253)
Q Consensus 47 a~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~------~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g- 119 (253)
++|+.|+|+. ++|+||||++|||+|||||||+ ||+ +.+|+|++||+||||||||++|++++|++++
T Consensus 40 ~~r~~w~p~~------~~P~yLdG~lPGD~GFDPlGL~-~p~~~~~~~~~~~~r~aEL~hGR~AMLa~~G~lv~Ell~~~ 112 (262)
T PLN00048 40 ADRQLWFASK------QSLSYLDGTLPGDFGFDPLGLS-DPEGAGGFIEPQWLAYGEVINGRFAMLGAAGAIAPEILGKA 112 (262)
T ss_pred CCCceecCCC------CCccccCCCCCCccCCCccccC-CccccccchhHHHHHHHHhhcchHHHHHHhhHHHHHHhccC
Confidence 3689999986 4899999999999999999998 443 5799999999999999999999999999862
Q ss_pred --------CCCcCCCCCCCCCC---ccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCC
Q 025421 120 --------IPWFEAGADPGAIA---PFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQG 188 (253)
Q Consensus 120 --------~pw~~ag~~~~~~~---~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~ 188 (253)
.+||++++.+.... .....+++++|+++||++|++|++++++|++++.++...+. ......+++.
T Consensus 113 g~~~~~~~~~w~~ag~~~~~~~~~y~~~p~~l~~~~~~lmg~~E~~R~~~~~~pG~~~~~~~~~~~----~~~~~~~d~~ 188 (262)
T PLN00048 113 GLIPQETALPWFQSGVIPPAGTYDYWADPYTLFVLEMALMGFAEHRRAQDYYKPGSMGKQYFLGLE----KGLGGSGNPA 188 (262)
T ss_pred CccccccccccccccccccccccccccchhHHHHHHHHHhhheeeeccccccCCCcccccccccch----hccccccccc
Confidence 25998875422110 00123577889999999999999999999988765433221 1111123678
Q ss_pred CCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 189 YPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 189 yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
||||++||||||. +|+|+++++|++|||||||||+|++||++|+ +||++||+||.
T Consensus 189 yPG~~~fDPlGl~---------~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~gp~~~L~ 244 (262)
T PLN00048 189 YPGGPFFNPLGFG---------KDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGVGPFQNLL 244 (262)
T ss_pred cccccccCccccc---------cchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCCCHHHHHH
Confidence 9999899999997 4899999999999999999999999999999 79999999973
No 8
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=100.00 E-value=1.4e-51 Score=366.90 Aligned_cols=173 Identities=38% Similarity=0.662 Sum_probs=146.2
Q ss_pred cccCcceeEecCCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhh
Q 025421 35 TSSKKSVVVAALPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 114 (253)
Q Consensus 35 ~~~r~~~~v~~aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~ 114 (253)
+.+|+..+++++++|+.|+|..+ .|+||||++|||+||||+||++|+++++|+|++|||||||||||++|++++
T Consensus 21 ~~~~~~~~~~~~~~r~~W~P~~~------~P~~Ldg~~pGd~GFDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~ 94 (246)
T PLN00100 21 STTRRPRVRVAARARPMWYPGAT------APKYLDGTMAGDYGFDPLRLGANPETLPYLQEAELMNGRWAMAATAGILFT 94 (246)
T ss_pred ccccccccccccCCCcccCCCCC------CCCCCCCCCCCCcCCCccccCCCHHHHHHHHHHHhhcchHHHHHHhhhhHH
Confidence 34566666777789999999874 899999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCcCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCC
Q 025421 115 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKF 194 (253)
Q Consensus 115 e~~~g~pw~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~ 194 (253)
|+++-..|++++...+.. ...+++++|+++||++|.+|+.++.+ .++.++||++.
T Consensus 95 E~~~~P~w~~ag~~~~~~---~~~~l~~iqill~g~~E~~r~~~~~~----------------------~g~~~~pg~~~ 149 (246)
T PLN00100 95 DAVGLPKFWEAGAEKYGL---DLQTLVLIQVVVMAVLEAARYRGFMK----------------------TGESGVLSFFP 149 (246)
T ss_pred HHhcccchhhcchhhhcc---chhHHHHHHHHHHHHHhhhccccccc----------------------ccccCCCCCCC
Confidence 997533499887654322 23467788999999999999865421 23456788888
Q ss_pred ccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 195 FDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 195 FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
||||||.. +++|+||||||||||+||+||++|+ +||++|++||.
T Consensus 150 FDPLGl~~--------------~~~K~KEIkNGRLAMlA~lG~~~Q~~vTG~gPlenL~ 194 (246)
T PLN00100 150 FDPTGMDS--------------PEMKVKEVKNGRLAMLAFLGMVSQYAVTGKSPLEGLK 194 (246)
T ss_pred CCcccccH--------------HHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 99999952 6899999999999999999999999 89999999985
No 9
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=100.00 E-value=3.1e-50 Score=359.07 Aligned_cols=167 Identities=41% Similarity=0.734 Sum_probs=138.7
Q ss_pred CCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCC
Q 025421 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAG 126 (253)
Q Consensus 47 a~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag 126 (253)
+.|..|+|.. ..|+||||++|||+||||+||++++++++|||++|||||||||||++|++++|+++..+|++++
T Consensus 42 ~~~~~w~P~~------~~P~~Ldg~~pgd~GfDPlgls~~~~~~~~~r~~ELkHGR~AMLAv~G~i~~E~l~~~~w~~a~ 115 (243)
T PLN00099 42 TMSADWMPGQ------PRPPYLDGSAPGDFGFDPLRLGEVPENLERYKESELIHCRWAMLAVPGILVPEALGLGNWVKAQ 115 (243)
T ss_pred cccccccCCC------CCCccCCCCCCcccCCCccccccCHHHHHHHHHHhccCCcHHHHHHhhHHHHHHhccCCccccc
Confidence 4567999987 4899999999999999999999999999999999999999999999999999998756788775
Q ss_pred CC---CC-----CCCccc---hhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCc
Q 025421 127 AD---PG-----AIAPFS---FGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFF 195 (253)
Q Consensus 127 ~~---~~-----~~~~~~---~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~F 195 (253)
.. +. ...++. ..+++++|+++||++|.+|+.. . ...+..|||| .|
T Consensus 116 ~~~~~~~g~~~~~g~~~~~~~l~~~~~iqvl~ig~~E~~r~~~-~----------------------~~~~~~yPGd-~F 171 (243)
T PLN00099 116 EWAAIPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSME-K----------------------DPEKKKYPGG-AF 171 (243)
T ss_pred chhccCcchhhhccCccchhhHHHHHHHHHHHHHHHHHHhhcc-C----------------------CCCCCcCCCC-cC
Confidence 31 11 111222 2456678999999999987631 0 0124569999 69
Q ss_pred cccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--cCCCCCCccCC
Q 025421 196 DPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA--GQGKTPLGALG 252 (253)
Q Consensus 196 DPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~--~tG~~Pl~~l~ 252 (253)
|||||. +|+++++++|+|||||||||||||+||++|+ +||++|++||.
T Consensus 172 DPlGl~---------kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~gPl~nL~ 221 (243)
T PLN00099 172 DPLGYS---------KDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 221 (243)
T ss_pred Cccccc---------CCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCCChHHHHH
Confidence 999997 4899999999999999999999999999997 58999999984
No 10
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=100.00 E-value=2.1e-49 Score=356.56 Aligned_cols=172 Identities=40% Similarity=0.663 Sum_probs=139.7
Q ss_pred CCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccC--C----
Q 025421 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG--I---- 120 (253)
Q Consensus 47 a~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g--~---- 120 (253)
++|+.|++.. ..++|+||||++|||+||||+||++||++++|||++||+||||||||++|++++|++++ .
T Consensus 49 ~~R~~~l~p~----~~~~P~~Ldg~~pGD~GfDPlGls~dp~~~~~~re~El~hGR~AMLa~~G~i~~e~l~~~g~~~~~ 124 (262)
T PLN00025 49 PDRPKYLGPF----SGETPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVTPELLAKNGVKFGE 124 (262)
T ss_pred CCCccccCCc----ccCCcccccCcCCCCCCCCccccccCHHHHHHHHHHHHhccHHHHHHHhhhhhHHHhhcCCcCcCc
Confidence 5778888421 02579999999999999999999999999999999999999999999999999999863 2
Q ss_pred -CCcCCCCCC-------CCCCc-----cchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCC
Q 025421 121 -PWFEAGADP-------GAIAP-----FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187 (253)
Q Consensus 121 -pw~~ag~~~-------~~~~~-----~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 187 (253)
.||+++... +...+ .+..+++++|+++||++|.+|+.+ .+.. ...++
T Consensus 125 ~~W~~ag~~~~~~gg~~y~~~p~~~~~~~~~a~~~~qv~lmg~~E~~r~~~--~~~~------------------~~~d~ 184 (262)
T PLN00025 125 AVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGYRVNG--GPLG------------------EGLDP 184 (262)
T ss_pred ccccccccccccccccccccCcccchhhhHHHHHHHHHHHHHHHHHhcccC--Cccc------------------ccccC
Confidence 288887421 10011 123456778999999999999864 1110 01256
Q ss_pred CCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 188 ~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
.||||. ||||||+ +|+++++++|+||||||||||+|++||++|+ +||++||+||.
T Consensus 185 ~yPG~~-FDPlGl~---------~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~GPlenL~ 240 (262)
T PLN00025 185 LYPGGS-FDPLGLA---------DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLA 240 (262)
T ss_pred cCCccc-CCccccC---------CCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCChHHHHH
Confidence 899998 9999997 4899999999999999999999999999999 79999999984
No 11
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=100.00 E-value=7.7e-48 Score=353.42 Aligned_cols=179 Identities=38% Similarity=0.598 Sum_probs=143.8
Q ss_pred CCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccC------
Q 025421 46 LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG------ 119 (253)
Q Consensus 46 aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g------ 119 (253)
.++|++|+|.. .+..|+||||++|||+|||||||++||++++|||++|||||||||||++|++++|++++
T Consensus 105 g~~R~~wl~~~----~~~~P~yLdG~lpGD~GFDPLGL~~dp~~l~~~reaELkHGR~AMLA~~G~lv~e~l~~~g~~~~ 180 (324)
T PLN00171 105 GEERPRWLGPI----PYDYPDHLTGELPGDYGFDIAGLGKDPVAFDKYFNFEILHARWAMLAALGVVIPEVLDLFGAVHF 180 (324)
T ss_pred CCCCccccCCC----CCCCCcccCCCCCcccCCCccccccCHHHHHHHHHHHhccchHHHHHHhhHHHHHHhccCCcccc
Confidence 36788898654 23689999999999999999999999999999999999999999999999999998752
Q ss_pred --CCCcCCCCCCCC-------CCc-------cchhhHHHHHHHHHHHHHHhhhhcccCCCcccccccccccccccccccc
Q 025421 120 --IPWFEAGADPGA-------IAP-------FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANA 183 (253)
Q Consensus 120 --~pw~~ag~~~~~-------~~~-------~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 183 (253)
..||++|..... ..| .....+.++|+++|+.+|++|+.++..++.. .+ ..
T Consensus 181 ~~p~W~~aG~~~~~g~~~~y~~~p~~~~~~~q~l~~i~~iEillm~g~E~~R~~~~~~~~~~------------g~--~~ 246 (324)
T PLN00171 181 AEPVWWRVGYAKLQGDTLDYLGIPGLHIAGSQGVIVIAICQALLMVGPEYARYCGIEALEPL------------GI--YL 246 (324)
T ss_pred CccchhhcccccccccchhhccCCccccchhHHHHHHHHHHHHHhhhhhheeeccccccCCc------------cc--cC
Confidence 138888753210 011 0112456678899999999998765322210 00 12
Q ss_pred CCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccC
Q 025421 184 TGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251 (253)
Q Consensus 184 ~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l 251 (253)
.||.+||||.+||||||. +|+++++++|++|||||||||+||+||++|+ +||++|++||
T Consensus 247 PGD~gYPGG~~FDPLGl~---------~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~GPlenL 306 (324)
T PLN00171 247 PGDINYPGGALFDPLGLS---------KDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKGPVQNL 306 (324)
T ss_pred CCcccCCcccCCCccccC---------CCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCChHHHH
Confidence 567889999889999997 4899999999999999999999999999998 8999999997
No 12
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=100.00 E-value=3.2e-40 Score=276.44 Aligned_cols=151 Identities=43% Similarity=0.638 Sum_probs=115.8
Q ss_pred CCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCCCCCCCCCc---cchhhH
Q 025421 64 NPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAP---FSFGSL 140 (253)
Q Consensus 64 ~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag~~~~~~~~---~~~~~l 140 (253)
+|++|||+++||+||||+||++++ +++|+|++||||||+||||++|++++|++++.++.+.......+.. ++....
T Consensus 1 ~p~~l~G~~~~~~gfDPlgl~~~~-~~~~~R~aEl~hGR~AMLa~~g~~v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (156)
T PF00504_consen 1 PPPYLDGSVPGDYGFDPLGLSSDP-DFAWYREAELKHGRVAMLAFVGALVQEAGTGFPGVPSFLGQPAWAEAGGIPVPAA 79 (156)
T ss_dssp --TTTTSTSTTSTSSSTTTTTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHCHCHSTTTSSS-SSTSSSSSSTTSSSSHSH
T ss_pred CcccccCCCCCCCCCChhhcccch-hHHHHHHhHHHhhhhhhhhhHHHHHHHHhccCCcccccccccchhhhhhhhhhhH
Confidence 488999999999999999999887 9999999999999999999999999999987654322111000100 112233
Q ss_pred HH-HHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHH
Q 025421 141 LG-TQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRL 219 (253)
Q Consensus 141 ~~-~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~ 219 (253)
.+ .+++++|++|..+......+... ...+..|||+.+|||+|+. +|+++++++
T Consensus 80 ~~~~~l~~ig~~e~~~~~~~~~~~~~-----------------~~~~~~~pG~~~~dplgl~---------~~~~~~~~~ 133 (156)
T PF00504_consen 80 GWAQILLFIGALEPWRQQGVPEPGEG-----------------GGKDGRYPGDLGFDPLGLA---------KDPEEKEFM 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCTT-----------------SSSSSSSSSSSSSSTSSTS---------SSCHSHHCH
T ss_pred HHHHHHHHHhHhhhhhcccccCCccc-----------------ccccccCccccccchhhhh---------hhhhhhHHH
Confidence 33 45889999999988654322110 0224678999999999997 378999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhc
Q 025421 220 KVAEIKHARLAMVAMLIFYFEA 241 (253)
Q Consensus 220 k~kEIkNGRLAMlA~~Gf~~q~ 241 (253)
|++||||||||||||+|+++|+
T Consensus 134 ~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 134 QLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999986
No 13
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=100.00 E-value=8.8e-39 Score=280.40 Aligned_cols=156 Identities=32% Similarity=0.362 Sum_probs=113.8
Q ss_pred CCCcCCCCCCCCcCccCCCCCC-CHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcC--CCCCCCCCCccch-hh
Q 025421 64 NPEWLDGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFE--AGADPGAIAPFSF-GS 139 (253)
Q Consensus 64 ~p~~l~g~~pgd~gfDPlgl~~-~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~--ag~~~~~~~~~~~-~~ 139 (253)
.|+.|||+ .||++|||+||++ ++++++|+|++||||||+||||++|+++||.++ .|.+- -...+..+.+.+. ..
T Consensus 46 ~~p~l~g~-~Gd~~fDPlgl~~~~~~~~~~~r~~ElkhGR~AMlA~~G~~~~~~~~-~pG~~~~~~~~p~~~~a~~~~~~ 123 (209)
T PLN00089 46 KEFMFIGK-TGSKKFDPLGLAEKVEEFLPWFRESELKHGRAAMLAVAGFIAPDFVR-IPGEAYSFAAIPKTIDAHDALLK 123 (209)
T ss_pred CCccccCC-CCccCcCCccCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHc-CCCccccccccccHHHHHHhhcc
Confidence 46689999 9999999999985 677899999999999999999999999999864 34211 0001111110000 00
Q ss_pred -HHHHH-HHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHH
Q 025421 140 -LLGTQ-LLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLD 217 (253)
Q Consensus 140 -l~~~q-l~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~ 217 (253)
-...| +++||++|..... +... . . ....+||||++||||||.+ +|+++++
T Consensus 124 ~g~~~Qi~~~ig~~E~~~~~----~~~~-------------~--~-~~~~~~PGd~gfdplgl~~--------~d~~~~~ 175 (209)
T PLN00089 124 SGAMIQIFAWIGFVDLAVSA----PAAA-------------A--A-AEFDRTPGDFGFDLLALYP--------KDAAKME 175 (209)
T ss_pred cccHHHHHHHHHHHHHHHhh----cccc-------------c--c-ccCCCCCCCcCccccccCC--------CCHHHHH
Confidence 01346 5589999964321 1110 0 0 1124689999999999965 5899999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCc
Q 025421 218 RLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLG 249 (253)
Q Consensus 218 ~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~ 249 (253)
++|++||||||||||||+|+++|+ +||++.+.
T Consensus 176 ~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~~~ 208 (209)
T PLN00089 176 KKKDKELKNGRLAMVAIGGIATGSAITGHGFPY 208 (209)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999998 79988753
No 14
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=100.00 E-value=2.9e-33 Score=244.48 Aligned_cols=139 Identities=28% Similarity=0.344 Sum_probs=100.1
Q ss_pred ccCCCCC--CCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCC--CCC----CCCCCcc-chhhHHHHH-HHH
Q 025421 78 FDPLGLG--KDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEA--GAD----PGAIAPF-SFGSLLGTQ-LLL 147 (253)
Q Consensus 78 fDPlgl~--~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~a--g~~----~~~~~~~-~~~~l~~~q-l~~ 147 (253)
|||+||+ .|+++++|+|++|||||||||||++|+++++.....|++-. +.. +..+... ......+.| +++
T Consensus 47 fDPlgl~~~~~~~~~~~~r~~ElkhGRlAMlA~~G~~~~~~g~~~Pg~~~~~g~~~~~~p~~~~a~~~vp~~g~~qi~~~ 126 (202)
T PLN00120 47 FDPLGLVDDGDQEKFDRLRYVEIKHGRISMLAVVGYLVTEAGIRLPGDIDYSGTSFSDIPNGFAALDAIPTAGLLQILAF 126 (202)
T ss_pred CCCCccCCCCCHHHHHHHHHHHhhcccHHHHhhccceeecccccCCCccccccccccccccchhhhhhcchhHHHHHHHH
Confidence 9999997 47899999999999999999999999999997544554321 111 1100000 011223456 678
Q ss_pred HHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCc--cccccccccCCCCCCCCHHHHHHHHHHHHh
Q 025421 148 MGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFF--DPLCLAGTIKDGVYIPDTEKLDRLKVAEIK 225 (253)
Q Consensus 148 ~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~F--DPLgl~~~~~~~~~~~d~~~~~~~k~kEIk 225 (253)
+|++|+.++.+. .++.++|||+.+ +++|+.+ .|+++++++|+||||
T Consensus 127 ig~~E~~~~~~~------------------------~~~~~~pGd~~~g~~d~gfdp--------~~~~~~~~~~~~EL~ 174 (202)
T PLN00120 127 IGFLELAVMKDI------------------------TGEGEFVGDFRNGYIDFGWDS--------FDEETKLKKRAIELN 174 (202)
T ss_pred HHHHHHHhhccc------------------------ccCCCCCCccCCCCCCCCCCC--------CCHHHHHHHHHHHHH
Confidence 999998654321 123456886432 2566543 478999999999999
Q ss_pred hhHHHHHHHHHHHHhc-cCCCCCC
Q 025421 226 HARLAMVAMLIFYFEA-GQGKTPL 248 (253)
Q Consensus 226 NGRLAMlA~~Gf~~q~-~tG~~Pl 248 (253)
|||||||||+|+++|+ ++|+.|+
T Consensus 175 NGRLAMiai~G~~~qe~l~g~~~~ 198 (202)
T PLN00120 175 QGRAAQMGILALMVHEQLGVELPI 198 (202)
T ss_pred HHHHHHHHHHHHHHHHHccCCCcC
Confidence 9999999999999998 8999886
No 15
>PLN00147 light-harvesting complex I chlorophyll-a/b binding protein Lhca5; Provisional
Probab=99.54 E-value=5.1e-15 Score=133.40 Aligned_cols=56 Identities=36% Similarity=0.511 Sum_probs=51.8
Q ss_pred CcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCC
Q 025421 66 EWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 121 (253)
Q Consensus 66 ~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~p 121 (253)
..++..+|||++|||+||++|+++++++|.+||||||+||+|++|+++|++++|..
T Consensus 173 ~~~~~~yPGd~~FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vtg~G 228 (252)
T PLN00147 173 EGLEPGYPGGPLFNPLGLAKDIENAHDWKLKEIKNGRLAMVAMLGFFVQASVTHTG 228 (252)
T ss_pred cccCCCCcccccCCccccCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC
Confidence 45667799999999999999999999999999999999999999999999998753
No 16
>PLN00101 Photosystem I light-harvesting complex type 4 protein; Provisional
Probab=99.51 E-value=1.8e-14 Score=129.60 Aligned_cols=55 Identities=29% Similarity=0.366 Sum_probs=49.6
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCc
Q 025421 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLG 249 (253)
Q Consensus 186 ~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~ 249 (253)
+..+|||.+||||||. +|+++++++|++|||||||||||++|+++|+ .++.+++.
T Consensus 67 dG~~PGD~GFDPlGl~---------~d~~~~~~~r~aEl~hGRlAMla~~G~l~~e~l~~~g~~~ 122 (250)
T PLN00101 67 NGSLPGDNGFDPLGLA---------EDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIIN 122 (250)
T ss_pred CCCCCCccCCCccccC---------CCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCCCcC
Confidence 4568999999999997 4899999999999999999999999999998 68877763
No 17
>PLN00089 fucoxanthin-chlorophyll a/c binding protein; Provisional
Probab=99.51 E-value=1.7e-14 Score=126.99 Aligned_cols=53 Identities=43% Similarity=0.668 Sum_probs=48.8
Q ss_pred CCCCCCcCccCCCC-CCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCC
Q 025421 70 GSLPGDYGFDPLGL-GKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPW 122 (253)
Q Consensus 70 g~~pgd~gfDPlgl-~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw 122 (253)
+..|||++|||+|| .+|+++++++|.+||||||+||+|++|+++|++++|...
T Consensus 153 ~~~PGd~gfdplgl~~~d~~~~~~~~~~El~NGRlAM~a~~g~~~~~~~tg~g~ 206 (209)
T PLN00089 153 DRTPGDFGFDLLALYPKDAAKMEKKKDKELKNGRLAMVAIGGIATGSAITGHGF 206 (209)
T ss_pred CCCCCCcCccccccCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 46899999999999 468999999999999999999999999999999987653
No 18
>PLN00048 photosystem I light harvesting chlorophyll a/b binding protein 3; Provisional
Probab=99.50 E-value=2.1e-14 Score=130.13 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.2
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
|..+|||++|||+||++|+|+++++|.+|||||||||+|++|+++|++++|.
T Consensus 186 d~~yPG~~~fDPlGl~~~~e~~~~~k~~EiknGRLAM~A~~G~~~q~~~tg~ 237 (262)
T PLN00048 186 NPAYPGGPFFNPLGFGKDEKSMKELKLKEVKNGRLAMLAILGYFIQALVTGV 237 (262)
T ss_pred ccccccccccCccccccchHHHHHHHHHHHhhhHHHHHHhhhHhhhhhhcCC
Confidence 4469999999999999999999999999999999999999999999999875
No 19
>PLN00098 light-harvesting complex I chlorophyll a/b-binding protein (Lhac); Provisional
Probab=99.48 E-value=3.5e-14 Score=128.89 Aligned_cols=56 Identities=30% Similarity=0.366 Sum_probs=49.1
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCcc
Q 025421 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGA 250 (253)
Q Consensus 186 ~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~ 250 (253)
+..+|||++||||||+ +|+++++++|++||||||+||+|++|+++|+ .++.+++++
T Consensus 76 dG~~pGD~GFDPlgl~---------~~~~~~~~~r~aEl~HGR~AMLA~~G~~~~e~l~~~g~~~~ 132 (267)
T PLN00098 76 DGSLPGDFGFDPLGLG---------SDPELLKWFAQAELMHSRWAMLAVAGILIPECLERLGFIEN 132 (267)
T ss_pred CCCCCCCCCcCccccC---------CCHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCcccc
Confidence 4568999999999997 4899999999999999999999999999998 566666554
No 20
>PLN00170 photosystem II light-harvesting-Chl-binding protein Lhcb6 (CP24); Provisional
Probab=99.48 E-value=4.8e-14 Score=127.11 Aligned_cols=72 Identities=28% Similarity=0.367 Sum_probs=56.7
Q ss_pred HhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHH
Q 025421 153 SKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMV 232 (253)
Q Consensus 153 ~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMl 232 (253)
-++|.++.+|+++...+. .-+..+|||++||||||. +|+++++++|++||+|||+||+
T Consensus 51 ~k~w~p~~~~~~~~~~P~-------------~l~g~~PGd~GFDPlgl~---------~d~e~~~~~r~~El~hGR~AML 108 (255)
T PLN00170 51 KKSWIPAVKGGGNLVDPE-------------WLDGSLPGDYGFDPLGLG---------KDPAFLKWYREAELIHGRWAMA 108 (255)
T ss_pred CccccCCCCCCcccCCcc-------------cccccCCCCCCcCccccC---------CCHHHHHHHHHHHhhccHHHHH
Confidence 346777666666543321 124568999999999997 4899999999999999999999
Q ss_pred HHHHHHHhc-cCCCC
Q 025421 233 AMLIFYFEA-GQGKT 246 (253)
Q Consensus 233 A~~Gf~~q~-~tG~~ 246 (253)
|++|+++++ .+|..
T Consensus 109 a~~G~~v~e~l~g~~ 123 (255)
T PLN00170 109 AVVGIFVGQAWSGIP 123 (255)
T ss_pred HHHhhhhHHHccCCC
Confidence 999999998 57654
No 21
>PLN00025 photosystem II light harvesting chlorophyll a/b binding protein; Provisional
Probab=99.44 E-value=8.6e-14 Score=126.03 Aligned_cols=52 Identities=38% Similarity=0.622 Sum_probs=49.0
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 121 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~p 121 (253)
|..+|||+ |||+||++|+++++++|.+|||||||||+|++|+++|+++||..
T Consensus 183 d~~yPG~~-FDPlGl~~d~~~~~~~k~kEikNGRLAMlA~~G~~~q~~vTG~G 234 (262)
T PLN00025 183 DPLYPGGS-FDPLGLADDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKG 234 (262)
T ss_pred cCcCCccc-CCccccCCCHHHHHHHHHHHHhhhhHHHHHHHHHhhhhhhcCCC
Confidence 56799999 99999999999999999999999999999999999999999763
No 22
>PLN00187 photosystem II light-harvesting complex II protein Lhcb4; Provisional
Probab=99.42 E-value=1.3e-13 Score=126.02 Aligned_cols=52 Identities=40% Similarity=0.528 Sum_probs=48.9
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
+..+|||++|||+||++|+++++++|++|||||||||+|++|+++|++++|.
T Consensus 211 ~~~yPGg~~FDPlGl~~d~e~~~~~k~kEIkNGRLAMlA~lG~~vq~~vtg~ 262 (286)
T PLN00187 211 KRLYPGGKFFDPLGLAADPEKKETLQLAEIKHARLAMVAFLGFAVQAAATGK 262 (286)
T ss_pred CCCCCccccccccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC
Confidence 4568999999999999999999999999999999999999999999999875
No 23
>PLN00097 photosystem I light harvesting complex Lhca2/4, chlorophyll a/b binding; Provisional
Probab=99.41 E-value=1.7e-13 Score=122.95 Aligned_cols=72 Identities=25% Similarity=0.337 Sum_probs=54.9
Q ss_pred CCcCCCCcccCCCCCCCCC--cCCCC------CCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccC
Q 025421 48 PKKSWIPAVKGGGNLINPE--WLDGS------LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSG 119 (253)
Q Consensus 48 ~~~~w~~~~~~~G~~~~p~--~l~g~------~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g 119 (253)
|..+|....++++....|. +.++. +||.. |||+||++|+++++++|.+||||||+||+|++|+++|.++||
T Consensus 145 E~~r~~~~~~pg~~~~~p~~~~~~~~~~~d~gYPgg~-FDPlgl~~d~~~~~~lk~kEiknGRLAM~A~~G~~~q~~vTG 223 (244)
T PLN00097 145 EIRRWQDMKAPGSMNEDPLFGANKGDTNTDVGYPKGL-FDKFGWAKDEKKAAELKLKEIANGRLAMLAFLGCCAQAIQTG 223 (244)
T ss_pred HHHHhhcccCCCccccccccccccCCcccccCCCCCC-CCccccCCCHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhccC
Confidence 4556765554443333332 12232 55543 999999999999999999999999999999999999999997
Q ss_pred C
Q 025421 120 I 120 (253)
Q Consensus 120 ~ 120 (253)
.
T Consensus 224 k 224 (244)
T PLN00097 224 T 224 (244)
T ss_pred C
Confidence 6
No 24
>PLN00099 light-harvesting complex IChlorophyll A-B binding protein Lhca1; Provisional
Probab=99.38 E-value=3.1e-13 Score=121.39 Aligned_cols=51 Identities=41% Similarity=0.739 Sum_probs=46.1
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhh-ccCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA-WSGI 120 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~-~~g~ 120 (253)
+..+||| +|||+||.+|+++++++|.+||||||+||+|++|+++|+. ++|.
T Consensus 163 ~~~yPGd-~FDPlGl~kd~~~~~~~k~kELkNGRLAMiA~lGf~vQ~~~~~G~ 214 (243)
T PLN00099 163 KKKYPGG-AFDPLGYSKDPKKFEEYKVKEIKNGRLALLAFVGFCVQQSAYPGT 214 (243)
T ss_pred CCcCCCC-cCCcccccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhcCCC
Confidence 3469999 7999999999999999999999999999999999999984 5554
No 25
>PLN00100 light-harvesting complex chlorophyll-a/b protein of photosystem I (Lhca); Provisional
Probab=99.35 E-value=7.8e-13 Score=118.64 Aligned_cols=48 Identities=33% Similarity=0.426 Sum_probs=44.1
Q ss_pred CCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhcc
Q 025421 186 EQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEAG 242 (253)
Q Consensus 186 ~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~~ 242 (253)
|..+|||++||||||+ +|+++++++|++||||||+||+|++|+++++.
T Consensus 49 dg~~pGd~GFDPlgl~---------~~~~~~~~~r~aEl~hGR~AMla~~G~~~~E~ 96 (246)
T PLN00100 49 DGTMAGDYGFDPLRLG---------ANPETLPYLQEAELMNGRWAMAATAGILFTDA 96 (246)
T ss_pred CCCCCCCcCCCccccC---------CCHHHHHHHHHHHhhcchHHHHHHhhhhHHHH
Confidence 5578999999999997 48999999999999999999999999999873
No 26
>PLN00171 photosystem light-harvesting complex -chlorophyll a/b binding protein Lhcb7; Provisional
Probab=99.33 E-value=1e-12 Score=121.76 Aligned_cols=50 Identities=40% Similarity=0.647 Sum_probs=46.2
Q ss_pred CCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCC
Q 025421 72 LPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 121 (253)
Q Consensus 72 ~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~p 121 (253)
+||+.+|||+||++|+++++++|.+||||||+||+|++|+++|+.+||..
T Consensus 252 YPGG~~FDPLGl~~d~~~~~~~k~kELkNGRLAM~A~lG~~vq~~vTG~G 301 (324)
T PLN00171 252 YPGGALFDPLGLSKDPVAFEDLKVKEIKNGRLAMVAWLGFYIQAAVTGKG 301 (324)
T ss_pred CCcccCCCccccCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhcCCC
Confidence 56666799999999999999999999999999999999999999998763
No 27
>PF00504 Chloroa_b-bind: Chlorophyll A-B binding protein; InterPro: IPR022796 The light-harvesting complex (LHC) consists of chlorophylls A and B and the chlorophyll A-B binding protein. LHC functions as a light receptor that captures and delivers excitation energy to photosystems I and II with which it is closely associated. Under changing light conditions, the reversible phosphorylation of light harvesting chlorophyll a/b binding proteins (LHCII) represents a system for balancing the excitation energy between the two photosystems []. The N terminus of the chlorophyll A-B binding protein extends into the stroma where it is involved with adhesion of granal membranes and photo-regulated by reversible phosphorylation of its threonine residues []. Both these processes are believed to mediate the distribution of excitation energy between photosystems I and II. This family also includes the photosystem II protein PsbS, which plays a role in energy-dependent quenching that increases thermal dissipation of excess absorbed light energy in the photosystem [].; PDB: 2O01_2 2WSF_2 2WSC_2 3LW5_2 2WSE_2 1RWT_D 2BHW_C 1VCR_A.
Probab=99.33 E-value=7.9e-13 Score=110.69 Aligned_cols=49 Identities=49% Similarity=0.775 Sum_probs=46.1
Q ss_pred cCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhh
Q 025421 67 WLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ 115 (253)
Q Consensus 67 ~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e 115 (253)
..++.+|||++|||+|+.+|++..+++|.+||+|||+||+|++|+++||
T Consensus 107 ~~~~~~pG~~~~dplgl~~~~~~~~~~~~~El~NGRlAMla~~g~~~~e 155 (156)
T PF00504_consen 107 GKDGRYPGDLGFDPLGLAKDPEEKEFMQLAELKNGRLAMLAFAGFVAQE 155 (156)
T ss_dssp SSSSSSSSSSSSSTSSTSSSCHSHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999998999999999999999999999999999987
No 28
>PLN00120 fucoxanthin-chlorophyll a-c binding protein; Provisional
Probab=99.21 E-value=1.2e-11 Score=108.53 Aligned_cols=51 Identities=24% Similarity=0.294 Sum_probs=41.0
Q ss_pred CCCCCCcCcc--CCCCCC-CHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 70 GSLPGDYGFD--PLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 70 g~~pgd~gfD--Plgl~~-~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
+.+|||+.++ ++|+.. |+++.+++|.+||||||+||+|++|+++||.++|.
T Consensus 142 ~~~pGd~~~g~~d~gfdp~~~~~~~~~~~~EL~NGRLAMiai~G~~~qe~l~g~ 195 (202)
T PLN00120 142 GEFVGDFRNGYIDFGWDSFDEETKLKKRAIELNQGRAAQMGILALMVHEQLGVE 195 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5789954322 333332 78899999999999999999999999999999885
No 29
>PHA02337 putative high light inducible protein
Probab=97.67 E-value=2.8e-05 Score=49.96 Aligned_cols=27 Identities=33% Similarity=0.351 Sum_probs=24.5
Q ss_pred HHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 94 REAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 94 r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
..+|..|||+||++++..++.|.++|.
T Consensus 3 ~~aE~~NGRlAMiGfv~~~~~e~~tGq 29 (35)
T PHA02337 3 PEAEIFNGWLAMIGFVAAVGAYATTGQ 29 (35)
T ss_pred cHHHHHhhHHHHHHHHHHHHHHHHhCC
Confidence 368999999999999999999999865
No 30
>PHA02337 putative high light inducible protein
Probab=97.67 E-value=3.8e-05 Score=49.33 Aligned_cols=26 Identities=27% Similarity=0.225 Sum_probs=21.3
Q ss_pred HHHHhhhHHHHHHHHHHHHhc-cCCCC
Q 025421 221 VAEIKHARLAMVAMLIFYFEA-GQGKT 246 (253)
Q Consensus 221 ~kEIkNGRLAMlA~~Gf~~q~-~tG~~ 246 (253)
..|+-|||||||+|+..+..+ .||++
T Consensus 4 ~aE~~NGRlAMiGfv~~~~~e~~tGq~ 30 (35)
T PHA02337 4 EAEIFNGWLAMIGFVAAVGAYATTGQI 30 (35)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhCCC
Confidence 479999999999998877555 67765
No 31
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=97.66 E-value=2.5e-05 Score=66.94 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhc-cC-CCCCCccCCC
Q 025421 214 EKLDRLKVAEIKHARLAMVAMLIFYFEA-GQ-GKTPLGALGL 253 (253)
Q Consensus 214 ~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~t-G~~Pl~~l~~ 253 (253)
++.++.|..|+.||||||++|+--++-+ +| |++||.+|.+
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGqGiL~Ql~~ 171 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGMGPLEQFNG 171 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCcchHHHhcc
Confidence 4567778899999999999987665554 89 9999999864
No 32
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.76 E-value=0.00056 Score=61.17 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=27.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHh-ccCCCCCCccCC
Q 025421 220 KVAEIKHARLAMVAMLIFYFE-AGQGKTPLGALG 252 (253)
Q Consensus 220 k~kEIkNGRLAMlA~~Gf~~q-~~tG~~Pl~~l~ 252 (253)
...|+-|||+|||+|+..++. ..||.+-+++++
T Consensus 160 ~~aE~lNGR~AMiGFvaal~~E~~TG~gll~Qlg 193 (250)
T PLN00014 160 PEAELLNGRAAMVGFFMAYLVDSLTGVGLVDQMG 193 (250)
T ss_pred chhHhhhhHHHHHHHHHHHHHHHHcCCcHHHHHh
Confidence 458999999999998776654 589999888875
No 33
>PLN00014 light-harvesting-like protein 3; Provisional
Probab=96.33 E-value=0.003 Score=56.59 Aligned_cols=30 Identities=30% Similarity=0.461 Sum_probs=27.1
Q ss_pred HHHHHHhhcchhHhHHHHHHhhhhccCCCC
Q 025421 93 YREAELIHGRWAMAAVVGIFVGQAWSGIPW 122 (253)
Q Consensus 93 ~r~aEl~hGR~AMla~~G~~~~e~~~g~pw 122 (253)
+.++|+.|||+||+|++-.++.|.++|...
T Consensus 159 l~~aE~lNGR~AMiGFvaal~~E~~TG~gl 188 (250)
T PLN00014 159 LPEAELLNGRAAMVGFFMAYLVDSLTGVGL 188 (250)
T ss_pred CchhHhhhhHHHHHHHHHHHHHHHHcCCcH
Confidence 357999999999999999999999998764
No 34
>PLN00084 photosystem II subunit S (PsbS); Provisional
Probab=94.11 E-value=0.029 Score=48.37 Aligned_cols=33 Identities=27% Similarity=0.357 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhhcchhHhHHHHHHhhhhcc-CC
Q 025421 88 AFLKWYREAELIHGRWAMAAVVGIFVGQAWS-GI 120 (253)
Q Consensus 88 ~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~-g~ 120 (253)
...+..+.-|+.|||+||++++--++.|++| |.
T Consensus 130 ~~vrEqK~nE~~NGRLAMLGF~~alitE~lTgGq 163 (214)
T PLN00084 130 DQVREQKPYELFNGRLAMLGFAFAIAGDAVTGGM 163 (214)
T ss_pred HHHHhccchhhhhhHHHHHHHHHHHHHHHHhCCc
Confidence 3566778899999999999999999999999 44
No 35
>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]
Probab=36.30 E-value=25 Score=33.70 Aligned_cols=38 Identities=29% Similarity=0.569 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHhhc------chhHhHHHHHHhhhhccCCCCcC
Q 025421 86 DPAFLKWYREAELIHG------RWAMAAVVGIFVGQAWSGIPWFE 124 (253)
Q Consensus 86 ~~~~~~~~r~aEl~hG------R~AMla~~G~~~~e~~~g~pw~~ 124 (253)
|.-.-+|||.-||--| -+=|.| +||++.|+++|.|.|.
T Consensus 160 DYVATRWYRaPELLvGDtqYG~pVDiWA-iGCv~aEl~~G~pL~P 203 (396)
T KOG0593|consen 160 DYVATRWYRAPELLVGDTQYGKPVDIWA-IGCVFAELLTGEPLWP 203 (396)
T ss_pred hhhhhhhccChhhhcccCcCCCcccchh-hhHHHHHHhcCCcCCC
Confidence 4445689999999888 344443 6999999999999654
No 36
>PLN02449 ferrochelatase
Probab=26.50 E-value=44 Score=33.44 Aligned_cols=21 Identities=33% Similarity=0.458 Sum_probs=18.1
Q ss_pred HHHHHHHHHH-HhccCCCCCCc
Q 025421 229 LAMVAMLIFY-FEAGQGKTPLG 249 (253)
Q Consensus 229 LAMlA~~Gf~-~q~~tG~~Pl~ 249 (253)
+||+||+.++ .+.++|.+||-
T Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~ 484 (485)
T PLN02449 463 AAMLAVLLLLVLEVTSGFGNLH 484 (485)
T ss_pred hHHHHHHHHHHHHHHcCCCcCC
Confidence 9999999998 55589999984
Done!