Query 025421
Match_columns 253
No_of_seqs 235 out of 1150
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 09:56:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025421.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025421hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wsc_2 LHCA2, type II chloroph 100.0 2.2E-52 7.5E-57 376.7 1.1 184 46-252 61-251 (269)
2 3pl9_A Chlorophyll A-B binding 100.0 3.6E-51 1.2E-55 363.0 5.9 166 47-251 9-226 (243)
3 2bhw_A Chlorophyll A-B binding 100.0 2.8E-47 9.5E-52 337.8 15.6 171 47-251 19-209 (232)
4 2wsc_3 LHCA3, type II chloroph 100.0 6.9E-49 2.4E-53 355.1 4.6 185 48-252 55-258 (276)
5 2wsc_4 Chlorophyll A-B binding 100.0 3.1E-49 1E-53 353.7 0.5 175 48-252 52-233 (251)
6 2wsc_1 AT3G54890, LHCA1; photo 100.0 4.5E-46 1.5E-50 331.2 5.8 165 49-252 45-222 (241)
7 3pl9_A Chlorophyll A-B binding 99.4 4.9E-14 1.7E-18 125.1 3.9 49 71-120 172-220 (243)
8 2bhw_A Chlorophyll A-B binding 99.4 2.3E-13 8E-18 120.4 5.4 51 69-120 153-203 (232)
9 2wsc_3 LHCA3, type II chloroph 99.4 6.4E-14 2.2E-18 126.6 1.7 53 69-121 200-252 (276)
10 2wsc_4 Chlorophyll A-B binding 99.3 1.9E-13 6.4E-18 122.2 -0.4 53 187-248 68-121 (251)
11 2wsc_2 LHCA2, type II chloroph 99.3 1.6E-13 5.3E-18 123.7 -2.0 53 69-121 192-245 (269)
12 2wsc_1 AT3G54890, LHCA1; photo 99.2 8.3E-13 2.8E-17 117.3 -1.2 51 69-120 164-215 (241)
13 2dpr_A CON-T(K7GLA); conantoxi 22.5 58 0.002 18.3 2.1 14 88-101 7-20 (26)
No 1
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=100.00 E-value=2.2e-52 Score=376.73 Aligned_cols=184 Identities=40% Similarity=0.816 Sum_probs=121.8
Q ss_pred CCCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC-----
Q 025421 46 LPPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI----- 120 (253)
Q Consensus 46 aa~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~----- 120 (253)
.++|+.|+|+. .+|.||||++|||+||||+||++|||+++|||++|||||||||||++|++++|++++.
T Consensus 61 ~~~r~~wlpg~------~~P~~L~G~~pGD~GfDPlGL~~d~e~~~~~r~aElkHGR~AMLA~~G~l~~E~l~~~G~~~~ 134 (269)
T 2wsc_2 61 EPDRPLWFPGS------TPPPWLDGSLPGDFGFDPLGLGSDPESLRWNVQAELVHSRWAMLGAAGIFIPEFLTKLGILNT 134 (269)
T ss_dssp ---------------------------------------CCCSCCTTTHHHHHHTHHHHTTTTHHHHHHHHHCCTTSSSC
T ss_pred CCCcccccCCC------CCcccccCcCCCCCCCCccccCCCHHHHHHHHHHHHhcchHHHHHHHHhHhHHhhccCCcccC
Confidence 36899999976 4899999999999999999999999999999999999999999999999999998632
Q ss_pred -CCcCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccc
Q 025421 121 -PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLC 199 (253)
Q Consensus 121 -pw~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLg 199 (253)
.|++++...+.. ...+++++|+++||++|++|+.++.+|++++.+... ++.....++.+||||++|||||
T Consensus 135 p~w~~aG~~~~~~---~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f------~~~~~~~~d~~~PG~~~fDPlg 205 (269)
T 2wsc_2 135 PSWYTAGEQEYFT---DTTTLFIVELVFIGWAEGRRWADILNPGCVNTDPIF------PNNKLTGTDVGYPGGLWFDPLG 205 (269)
T ss_dssp CCCCSTTSSSSCC---CTTSHHHHHTTHHHHHHHHHHTTSSCCCCCSSSCCS------SSCCSSTTSCSCTTCSSCCCSS
T ss_pred ccccccchhhhhc---chHHHHHHHHHHHHHHHHHHHhccccCCcccccccc------ccccccccccCCCCCcccCccc
Confidence 377766432211 123456789999999999999998888876543211 1111223567899999999999
Q ss_pred cccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 200 LAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 200 l~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
|.+ .|+++++++|++||||||||||||+|+++|+ +||++||+||.
T Consensus 206 l~~--------~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g~l~~l~ 251 (269)
T 2wsc_2 206 WGS--------ASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLF 251 (269)
T ss_dssp SSS--------SCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTCSSCCCS
T ss_pred cCc--------ccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 974 4778899999999999999999999999998 79999999985
No 2
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=100.00 E-value=3.6e-51 Score=363.02 Aligned_cols=166 Identities=48% Similarity=0.839 Sum_probs=108.4
Q ss_pred CCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHH-------------------------------------
Q 025421 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAF------------------------------------- 89 (253)
Q Consensus 47 a~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~------------------------------------- 89 (253)
++|+.|+|+. ++|+||||++|||||||||||+++||.
T Consensus 9 ~~r~~w~pg~------~~P~~LdGslpGD~GfDPlgL~~~pe~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 82 (243)
T 3pl9_A 9 TDRPLWYPGA------KAPEYLDGSLVGDYGFDPFGLGKPAEYLQYDYDGLDQNLAKNLAGDIIGTRTESADVKSTSLQP 82 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCCC------CCcccccCCCCCcCCCCccccCCChhhhccccccchhhhhcccccccccccccccccccccccc
Confidence 5799999986 489999999999999999999999873
Q ss_pred ------HHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCCCCC------CCC--CccchhhHHHHHHHHHHHHHHhh
Q 025421 90 ------LKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADP------GAI--APFSFGSLLGTQLLLMGWVESKR 155 (253)
Q Consensus 90 ------~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag~~~------~~~--~~~~~~~l~~~ql~~~G~vE~~r 155 (253)
++|||++|||||||||||++|++++|++++.+|+++|... +.. .+++..+++++|+++||++|.+|
T Consensus 83 ~~~~~~l~r~ReaELkHGRwAMLAvlG~lvpE~l~g~~W~~aG~~~~~~g~~y~g~p~~~~i~~l~~~qv~lmG~~E~~R 162 (243)
T 3pl9_A 83 YSEVFGLQRFRECELIHGRWAMLATLGALTVEGLTGITWQDAGKVELIEGSSYLGQPLPFSMTTLIWIEVLVIGYIEFQR 162 (243)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTTHHHHHHHSCEEETTEEECCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHHhhhhcchhHHHHHHHHHhHHhhcCcccccccccccccccccccCccchhhHHHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999988999876421 111 12344577889999999999999
Q ss_pred hhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHH
Q 025421 156 WVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAML 235 (253)
Q Consensus 156 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~ 235 (253)
+.+. . ..+..||||+ ||||||. +|+++++++|++|||||||||+||+
T Consensus 163 ~~~~-~----------------------~~~~~~PG~~-FDPLGl~---------~d~e~~~~~r~~ElknGRlAMla~~ 209 (243)
T 3pl9_A 163 NAEL-D----------------------TEKRLYPGGT-FDPLGLA---------SDPEKKPILQLAEIKHARLAMVGFL 209 (243)
T ss_dssp HSCC-C----------------------TTTTTCCCGG-GCTTCTT---------CSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hccc-C----------------------CccccCCCcc-hhhcccc---------ccHHHHHHHHHHHHhhccHHHHHHH
Confidence 8652 0 1134699998 9999997 4789999999999999999999999
Q ss_pred HHHHhc-cCCCCCCccC
Q 025421 236 IFYFEA-GQGKTPLGAL 251 (253)
Q Consensus 236 Gf~~q~-~tG~~Pl~~l 251 (253)
|+++|+ +||++||+||
T Consensus 210 g~~~q~~vtG~Gpl~~l 226 (243)
T 3pl9_A 210 GFAVQAAVTGKGPLNNW 226 (243)
T ss_dssp HHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHhcCCChHHHH
Confidence 999998 7999999987
No 3
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=100.00 E-value=2.8e-47 Score=337.85 Aligned_cols=171 Identities=40% Similarity=0.680 Sum_probs=137.5
Q ss_pred CCCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhcc--C-----
Q 025421 47 PPKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS--G----- 119 (253)
Q Consensus 47 a~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~--g----- 119 (253)
++|+.|++... ...|+||||++|||+|||||||++|+++++||||+|||||||||||++|++++|+++ |
T Consensus 19 ~~r~~~l~~~~----~~~P~~LdG~~pGD~GFDPLGLs~d~e~~~r~ReaELkHGR~AMLA~~G~lv~E~l~~~G~~~~~ 94 (232)
T 2bhw_A 19 PDRVKYLGPFS----GESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGSVFPELLSRNGVKFGE 94 (232)
T ss_dssp TTCCCTTGGGC----CSCCTTCCSCSTTCCSCCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred CCcccccCccc----cCCccccCCcCCCCCCCCCCcCCCCHHHHHHHHHHHHhccchHHHhhhhhhhHHHhccCCcCCcc
Confidence 56788886531 258999999999999999999999999999999999999999999999999999864 2
Q ss_pred CCCcCCCCCCC------------CCCccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCC
Q 025421 120 IPWFEAGADPG------------AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQ 187 (253)
Q Consensus 120 ~pw~~ag~~~~------------~~~~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~ 187 (253)
..|+++|.... ......+..++.+|+++||++|.+|+.+ .|.. ...++
T Consensus 95 ~~w~~ag~~~~~~~~~~~~~~P~~~~~q~i~~~~~~q~~~~g~~E~~r~~~--g~~g------------------~~~d~ 154 (232)
T 2bhw_A 95 AVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAG--GPLG------------------EVVDP 154 (232)
T ss_dssp CSGGGSGGGGGSTTCEEGGGCTTSEEECCHHHHHHHHHHHHHHHHHHHHHE--ETTE------------------ECSSS
T ss_pred cccccccchhccccchhcccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcc--Cccc------------------ccccc
Confidence 23777653210 0001123355678999999999998864 1110 12356
Q ss_pred CCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccC
Q 025421 188 GYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGAL 251 (253)
Q Consensus 188 ~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l 251 (253)
.||||. ||||||. +|+++++++|++||||||||||||+|+++|+ +||++||+||
T Consensus 155 ~~Pg~~-fdPlgl~---------~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~g~~~~l 209 (232)
T 2bhw_A 155 LYPGGS-FDPLGLA---------DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENL 209 (232)
T ss_dssp SCCCTT-SCTTCTT---------CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSHHHH
T ss_pred cCCCcc-cccchhc---------cchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCCChHHHH
Confidence 799997 9999997 4899999999999999999999999999998 7999999986
No 4
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=100.00 E-value=6.9e-49 Score=355.08 Aligned_cols=185 Identities=38% Similarity=0.679 Sum_probs=113.7
Q ss_pred CCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHH------HHHHHHHHhhcchhHhHHHHHHhhhhccCC-
Q 025421 48 PKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFL------KWYREAELIHGRWAMAAVVGIFVGQAWSGI- 120 (253)
Q Consensus 48 ~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~------~~~r~aEl~hGR~AMla~~G~~~~e~~~g~- 120 (253)
+|+.|+|.. ..|+||||++|||+||||||| +||+++ +|+|++||+||||||||++|++++|++++.
T Consensus 55 ~R~~wlP~~------~~P~~L~G~~pGD~GfDPlGl-~d~~~~~~~~~~~~~r~aEl~hGR~AMLa~~G~l~~E~~~~~g 127 (276)
T 2wsc_3 55 DRPLWFASK------QSLSYLDGSLPGDYGFDPLGL-SDPEGTGGFIEPKWLAYGEIINGRYAMLGAVGAIAPEILGKAG 127 (276)
T ss_dssp -------------------------------------CCCCCCCCSSSTTHHHHHHHHHHTTSCCTTTSTTSCSSCSSCC
T ss_pred CccccCCCC------CCcccccCcCCCccCCCcccc-CChHhhcchhhHHHHHHHHhhcccchhhhHHHHHHHHHhcccc
Confidence 789999865 489999999999999999999 588888 999999999999999999999999998632
Q ss_pred --------CCcCCCCCCCCCCc---cchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCC
Q 025421 121 --------PWFEAGADPGAIAP---FSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGY 189 (253)
Q Consensus 121 --------pw~~ag~~~~~~~~---~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~y 189 (253)
.|++.+..+.+... ....+++++|+++||++|.+|+.++.+|++++.+....+ +......++.+|
T Consensus 128 ~~~~~~p~~w~~~g~ip~aG~~~~~~~~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~~g~----~~~~~~~~d~~y 203 (276)
T 2wsc_3 128 LIPQETALPWFRTGFIPPAGTYNYWADSYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGL----EKGLGGSGEPAY 203 (276)
T ss_dssp CCCCSSCCSSSSCCCC-----CCCSCCCCSTTHHHHHHTHHHHTTTTTGGGSCCCCCCCCSSCS----CCCCCCCSSCTT
T ss_pred cccccCcchhhhhhcccchhHHHHhccchHHHHHHHHHHHHHHHhhhcccccCCcccccccccc----cccccccccccC
Confidence 27775544322110 112346678999999999999999888887654322111 111122346789
Q ss_pred CCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 190 PGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 190 PG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
|||.+||||||.+ |+++++++|++||||||||||||+|+++|+ +||++|++||.
T Consensus 204 PG~~~fDPlgl~~---------~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g~~~~l~ 258 (276)
T 2wsc_3 204 PGGPFFNPLGFGK---------DEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVGPYQNLL 258 (276)
T ss_dssp TSSSSCCCCCCSS---------SCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSCCSCC--
T ss_pred CCcccccchhccc---------ccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCChHHHHH
Confidence 9999999999973 566799999999999999999999999998 79999999984
No 5
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=100.00 E-value=3.1e-49 Score=353.66 Aligned_cols=175 Identities=41% Similarity=0.790 Sum_probs=114.8
Q ss_pred CCcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC-----C-
Q 025421 48 PKKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI-----P- 121 (253)
Q Consensus 48 ~~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~-----p- 121 (253)
+|+.|+|+. +.|.||||++|||+||||+||++|||+++|+|++|||||||||||++|++++|++++. |
T Consensus 52 ~r~~~~pg~------~~p~~l~g~~pGd~gfDPlGl~~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~~~p~ 125 (251)
T 2wsc_4 52 KKGEWLPGL------ASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPK 125 (251)
T ss_dssp -----------------------------------CCCSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSSCCCC
T ss_pred hhhhccCCC------CCccccCCCcCCCCCCCccccCCChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCccCCcc
Confidence 599999975 4899999999999999999999999999999999999999999999999999998752 3
Q ss_pred CcCCCCCCCCCCccchhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccccccc
Q 025421 122 WFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLCLA 201 (253)
Q Consensus 122 w~~ag~~~~~~~~~~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDPLgl~ 201 (253)
|++++...+... ..+++++|+++||++|.+|+.++.+|++++.+... +......++.+||||+ |||||+.
T Consensus 126 w~~aG~~~~~~~---~~~l~~~qi~liG~~E~~r~~~~~~pG~~g~~p~f------~~~~~~~~d~~yPGg~-FDPLgl~ 195 (251)
T 2wsc_4 126 WYAAGKEEYFAS---SSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF------KQYSLPAGEVGYPGGI-FNPLNFA 195 (251)
T ss_dssp CSCCCSSSCSSC---SSCTTTTHHHHHHTTTHHHHHHHSSCCCTTCCSSS------CSSSSCCHHHHSSCCT-TCCCCCC
T ss_pred ccccchHhhhcc---chHHHHHHHHHHHHHHHHHhhcccCCCcccccccc------cccccccccccCCCCc-cCccchh
Confidence 787765322111 12345678889999999999998888775433211 1111112345799997 9999996
Q ss_pred cccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCCccCC
Q 025421 202 GTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPLGALG 252 (253)
Q Consensus 202 ~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl~~l~ 252 (253)
+ ++++|+|||||||| ||||+||++|+ +||++||+||.
T Consensus 196 ~-------------~~~~k~kELkNGRL-MlAilGf~vQe~vTG~gPl~nL~ 233 (251)
T 2wsc_4 196 P-------------TLEAKEKEIANGRL-MLAFLGFIIQHNVTGKGPFDNLL 233 (251)
T ss_dssp S-------------SSSCTTHHHHHHHT-TTTHHHHHHHHTTSCCCCCCCTT
T ss_pred H-------------HHHHHHHHHhcchh-HHHHHHHHHHHHhcCccHHHHHH
Confidence 3 46889999999999 99999999999 79999999985
No 6
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=100.00 E-value=4.5e-46 Score=331.17 Aligned_cols=165 Identities=44% Similarity=0.759 Sum_probs=118.5
Q ss_pred CcCCCCcccCCCCCCCCCcCCCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCCCcCCCCC
Q 025421 49 KKSWIPAVKGGGNLINPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGAD 128 (253)
Q Consensus 49 ~~~w~~~~~~~G~~~~p~~l~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~pw~~ag~~ 128 (253)
++.|+|+. ..|+||||++|||+||||+||++|+++++|+|++|||||||||||++|++++|+++...|++++..
T Consensus 45 ~~~w~P~~------~~P~~L~G~~pgd~gfDPlgl~~~~~~~~~~r~~El~hgR~AMla~~G~~~~e~~~~~~~~~a~~~ 118 (241)
T 2wsc_1 45 AAHWMPGE------PRPAYLDGSAPGDFGFDPLGLGEVPANLERYKESELIHCRWAMLAVPGILVPEALGYGNWVKAQEW 118 (241)
T ss_dssp ----------------------CTTSSCCCSSTTTTTTTTHHHHSHHHHHHHHHHHTTTSTTSSSTTCCCCC-----CCC
T ss_pred ccccCCCC------CCcccccCCCCCcCCcCccccCCCHHHHHHHHHHHHhhchhHHhhhhcccchhhccCCccccccch
Confidence 56799986 489999999999999999999999999999999999999999999999999999765456654321
Q ss_pred ---C-----CCCCcc---chhhHHHHHHHHHHHHHHhhhhcccCCCccccccccccccccccccccCCCCCCCCCCCccc
Q 025421 129 ---P-----GAIAPF---SFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDP 197 (253)
Q Consensus 129 ---~-----~~~~~~---~~~~l~~~ql~~~G~vE~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~yPG~~~FDP 197 (253)
+ +...+. ....++++|+++||++|.+|+.+. ...+..|||| .|||
T Consensus 119 ~~~~~g~a~~~~~~~~~~~~~~i~~iq~l~ig~~E~~r~~~~-----------------------~~~~~~yPgg-~fDP 174 (241)
T 2wsc_1 119 AALPGGQATYLGNPVPWGTLPTILAIEFLAIAFVEHQRSMEK-----------------------DPEKKKYPGG-AFDP 174 (241)
T ss_dssp CSCSSCSSCCSSSCSSSSSHHHHHHHHHHHTHHHHHHHTSCC-----------------------SSCCSSSCSC-CSCS
T ss_pred hccCCcchhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------------CCCCCCCCCC-cccc
Confidence 1 111121 233566788999999999887420 0124579999 5999
Q ss_pred cccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--cCCCCCCccCC
Q 025421 198 LCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA--GQGKTPLGALG 252 (253)
Q Consensus 198 Lgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~--~tG~~Pl~~l~ 252 (253)
||+. +|+++++++|++|||||||||||++|+++|+ +||++||+||+
T Consensus 175 lgl~---------~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~gpl~~l~ 222 (241)
T 2wsc_1 175 LGYS---------KDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGTGPLENLA 222 (241)
T ss_dssp SSCS---------CSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCSCCCCCSS
T ss_pred cccc---------cchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCCchHHHHH
Confidence 9997 3778889999999999999999999999987 59999999986
No 7
>3pl9_A Chlorophyll A-B binding protein; CP29, light-harvesting COMP membrane protein, plant, photosynthesis, chloroplast, thyla photosystem II; HET: CLA CHL LUT XAT NEX G3P HTG; 2.80A {Spinacia oleracea}
Probab=99.43 E-value=4.9e-14 Score=125.06 Aligned_cols=49 Identities=41% Similarity=0.597 Sum_probs=46.9
Q ss_pred CCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 71 SLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 71 ~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
.+|||+ |||+||++|+++++++|++||||||+||+|++|+++|+++||.
T Consensus 172 ~~PG~~-FDPLGl~~d~e~~~~~r~~ElknGRlAMla~~g~~~q~~vtG~ 220 (243)
T 3pl9_A 172 LYPGGT-FDPLGLASDPEKKPILQLAEIKHARLAMVGFLGFAVQAAVTGK 220 (243)
T ss_dssp TCCCGG-GCTTCTTCSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred cCCCcc-hhhccccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCC
Confidence 589999 9999999999999999999999999999999999999999875
No 8
>2bhw_A Chlorophyll A-B binding protein AB80; LHC-II, photosynthesis, light-harvesting, membrane protein, chloroplast, chromophore, membrane; HET: LUX NEX XAT CLA CHL LHG DGD; 2.50A {Pisum sativum} PDB: 1vcr_A* 1rwt_A*
Probab=99.38 E-value=2.3e-13 Score=120.36 Aligned_cols=51 Identities=41% Similarity=0.653 Sum_probs=48.1
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI 120 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~ 120 (253)
|..+|||+ |||+||++|+++++++|.+||||||+||+|++|+++|++++|.
T Consensus 153 d~~~Pg~~-fdPlgl~~~~~~~~~~~~~E~~nGRlAM~~~~g~~~~~~~tg~ 203 (232)
T 2bhw_A 153 DPLYPGGS-FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGK 203 (232)
T ss_dssp SSSCCCTT-SCTTCTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccCCCcc-cccchhccchHHHHHHHHhhhhccchHHHHHHHHHHHHHhcCC
Confidence 55689998 9999999999999999999999999999999999999999875
No 9
>2wsc_3 LHCA3, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Glycine max} PDB: 2wse_3* 2wsf_3* 3lw5_3* 2o01_3*
Probab=99.38 E-value=6.4e-14 Score=126.64 Aligned_cols=53 Identities=40% Similarity=0.621 Sum_probs=44.5
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 121 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~p 121 (253)
|..+|||++|||+||++|+++++++|++||||||+||||++|+++||+++|..
T Consensus 200 d~~yPG~~~fDPlgl~~~~~~~~~~r~~Ei~nGRlAMla~~g~~~~~~~tg~g 252 (276)
T 2wsc_3 200 EPAYPGGPFFNPLGFGKDEKSLKDLKLKEVKNGRLAMLAILGYFVQALVTGVG 252 (276)
T ss_dssp SCTTTSSSSCCCCCCSSSCC-----CCSHHHHHHHHHHHHHHHHSSCCCCSSC
T ss_pred cccCCCcccccchhcccccHHHHHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 45689999999999998888899999999999999999999999999999863
No 10
>2wsc_4 Chlorophyll A-B binding protein P4, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_4* 2wsf_4* 3lw5_4* 2o01_4*
Probab=99.30 E-value=1.9e-13 Score=122.18 Aligned_cols=53 Identities=30% Similarity=0.376 Sum_probs=35.3
Q ss_pred CCCCCCCCccccccccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHhc-cCCCCCC
Q 025421 187 QGYPGGKFFDPLCLAGTIKDGVYIPDTEKLDRLKVAEIKHARLAMVAMLIFYFEA-GQGKTPL 248 (253)
Q Consensus 187 ~~yPG~~~FDPLgl~~~~~~~~~~~d~~~~~~~k~kEIkNGRLAMlA~~Gf~~q~-~tG~~Pl 248 (253)
..+|||.+||||||+ +|+|+++++|.+||||||+||+|++|+++++ .++.+.+
T Consensus 68 g~~pGd~gfDPlGl~---------~d~e~~~~~r~aEl~hGR~AMla~~G~~~~e~~~~~g~~ 121 (251)
T 2wsc_4 68 GSLPGDNGFDPLGLA---------EDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGII 121 (251)
T ss_dssp -------------CC---------CSCCCTTTTHHHHHHHTHHHHHHHTTSSTTSSSCCSCSS
T ss_pred CCcCCCCCCCccccC---------CChHHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcc
Confidence 358999999999997 4788899999999999999999999999998 5776655
No 11
>2wsc_2 LHCA2, type II chlorophyll A/B binding protein from photosystem I; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Pisum sativum} PDB: 2wse_2* 2wsf_2* 2o01_2* 3lw5_2*
Probab=99.28 E-value=1.6e-13 Score=123.70 Aligned_cols=53 Identities=42% Similarity=0.677 Sum_probs=48.2
Q ss_pred CCCCCCCcCccCCCCCC-CHHHHHHHHHHHHhhcchhHhHHHHHHhhhhccCCC
Q 025421 69 DGSLPGDYGFDPLGLGK-DPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIP 121 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~-~~~~~~~~r~aEl~hGR~AMla~~G~~~~e~~~g~p 121 (253)
|..+|||++|||+||.+ |+++++++|.+||||||+||||++|++++++++|..
T Consensus 192 d~~~PG~~~fDPlgl~~~~~e~~~~~~~~Ei~nGRlAMla~~g~~~~~~~tg~g 245 (269)
T 2wsc_2 192 DVGYPGGLWFDPLGWGSASPQKLKELRTKEIKNGRLAMLAVMGAWFQHIYTGTG 245 (269)
T ss_dssp SCSCTTCSSCCCSSSSSSCCCSCTTSTTTTHHHHHHHHTTTSSSCHHHHHTTTC
T ss_pred ccCCCCCcccCccccCcccHHHHHHHHHhhcccchHHHHHHHHHHHHHHhcCCC
Confidence 44689999999999984 788899999999999999999999999999999863
No 12
>2wsc_1 AT3G54890, LHCA1; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Arabidopsis thaliana} PDB: 2wse_1* 2wsf_1* 2o01_1* 3lw5_1*
Probab=99.21 E-value=8.3e-13 Score=117.31 Aligned_cols=51 Identities=43% Similarity=0.709 Sum_probs=46.0
Q ss_pred CCCCCCCcCccCCCCCCCHHHHHHHHHHHHhhcchhHhHHHHHHhhh-hccCC
Q 025421 69 DGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQ-AWSGI 120 (253)
Q Consensus 69 ~g~~pgd~gfDPlgl~~~~~~~~~~r~aEl~hGR~AMla~~G~~~~e-~~~g~ 120 (253)
++.+||+ +|||+||.+|+++++++|.+||||||+||||++|+++++ .++|.
T Consensus 164 ~~~yPgg-~fDPlgl~~~~~~~~~~r~~E~~nGRlAM~a~~g~~~~~~~~tG~ 215 (241)
T 2wsc_1 164 KKKYPGG-AFDPLGYSKDPKKLEELKVKEIKNGRLALLAFVGFCVQQSAYPGT 215 (241)
T ss_dssp CSSSCSC-CSCSSSCSCSSSSCCCSCTTHHHHHHHHHHHHHSGGGGGSSSCCS
T ss_pred CCCCCCC-cccccccccchhHHHHHHHhhcccccHHHHHHHHHHHhhhhcCCC
Confidence 4568998 599999999999999999999999999999999999999 46765
No 13
>2dpr_A CON-T(K7GLA); conantoxin, nmdar antagonist, GLA-containing, metal B protein; HET: CGU; 1.70A {Synthetic} PDB: 1ont_A*
Probab=22.46 E-value=58 Score=18.30 Aligned_cols=14 Identities=36% Similarity=0.435 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHhhc
Q 025421 88 AFLKWYREAELIHG 101 (253)
Q Consensus 88 ~~~~~~r~aEl~hG 101 (253)
+-++.+|++|+|.-
T Consensus 7 emlenlreaevkkn 20 (26)
T 2dpr_A 7 EMLENLREAEVKKN 20 (26)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 46788999999853
Done!