Query 025423
Match_columns 253
No_of_seqs 28 out of 30
Neff 3.2
Searched_HMMs 13730
Date Mon Mar 25 09:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025423.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025423hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1yela1 b.142.1.2 (A:1-102) At 31.0 9.8 0.00071 26.9 1.7 49 41-97 39-87 (102)
2 d1wida_ b.142.1.2 (A:) DNA-bin 23.8 14 0.00099 26.2 1.4 52 39-95 44-95 (117)
3 d1ik9a1 b.59.1.1 (A:1-117) XRC 22.8 64 0.0046 24.2 5.2 66 28-96 19-90 (117)
4 d1i6la_ c.26.1.1 (A:) Tryptoph 22.7 34 0.0025 27.9 3.9 52 35-96 30-81 (326)
5 d1v8ha1 b.1.18.19 (A:2-107) Su 22.5 22 0.0016 25.8 2.4 41 16-58 63-104 (106)
6 d1xsza1 a.118.3.1 (A:1-197) Ra 18.2 18 0.0013 28.7 1.1 54 40-94 139-196 (197)
7 d1kpia_ c.66.1.18 (A:) CmaA2 { 13.8 73 0.0053 25.8 3.9 54 39-92 112-169 (291)
8 d1vlra1 d.13.1.3 (A:146-337) m 13.5 41 0.003 26.9 2.1 45 26-72 117-163 (192)
9 d2a22a1 d.159.1.7 (A:4-196) Va 13.1 36 0.0027 25.5 1.6 15 36-50 1-15 (193)
10 d2guya1 b.71.1.1 (A:382-476) F 13.1 56 0.0041 23.4 2.6 25 106-130 68-92 (95)
No 1
>d1yela1 b.142.1.2 (A:1-102) At1g16640 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=30.99 E-value=9.8 Score=26.87 Aligned_cols=49 Identities=10% Similarity=0.346 Sum_probs=35.5
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecCC
Q 025423 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEGH 97 (253)
Q Consensus 41 ~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~VkL~l~~~ 97 (253)
.|.+.|-+...|.-.+... .+.+.++++|.+|+.. .+|+-||+ ++|+-.
T Consensus 39 ~i~L~d~~G~~W~v~~~~~-----~~~~~~~~GW~~Fv~~--n~L~~GD~-~vF~~~ 87 (102)
T d1yela1 39 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVKD--NNLEDGKY-LQFIYD 87 (102)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHHH--HTCCTTCE-EEEEEC
T ss_pred EEEEEcCCCCEEEEEEEEe-----CCeEEEccCHHHHHHH--cCCCcCCE-EEEEEc
Confidence 4566688899998776543 4567889999999864 67888884 455543
No 2
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.80 E-value=14 Score=26.16 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=38.0
Q ss_pred CeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeec
Q 025423 39 HLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILE 95 (253)
Q Consensus 39 hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~VkL~l~ 95 (253)
..-|++-|.|...|+-.+++-.-. ..-.++++|.+|+.- ..|+-||+=+..-
T Consensus 44 ~~~~~~~d~~g~~W~~~~~~~~~~---~~~~l~~GW~~Fv~~--~~Lk~GD~~~F~~ 95 (117)
T d1wida_ 44 GVLLNFEDVNGKVWRFRYSYWNSS---QSYVLTKGWSRFVKE--KNLRAGDVVSFSR 95 (117)
T ss_dssp CEEEEEEETTTEEEEEEEEEETTT---TEEEEESSHHHHHHH--TTCCTTCEEEEEE
T ss_pred cEEEEEEeCCCCEEEEEEEEECCC---CceEEecCHHHHHHH--cCCCCCCEEEEEE
Confidence 467999999999998888774222 122466779999875 4599999876543
No 3
>d1ik9a1 b.59.1.1 (A:1-117) XRCC4, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.83 E-value=64 Score=24.22 Aligned_cols=66 Identities=14% Similarity=0.243 Sum_probs=50.7
Q ss_pred eEEEEeCCCC-CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecC
Q 025423 28 FLFHVSAPDS-SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEG 96 (253)
Q Consensus 28 fLFh~~a~d~-~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~sl-----sS~~VkL~l~~ 96 (253)
||+----.|- +...|..||.| ++|....|=+++--+-|+++- --..|++-++-.| ..++-++.|..
T Consensus 19 FL~vsw~~dlgsGf~l~LtDG~-saW~G~Vse~dis~eA~~m~M--e~e~Yv~el~kAl~~~~~~~~~y~F~~s~ 90 (117)
T d1ik9a1 19 FLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSK 90 (117)
T ss_dssp EEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHCC----CCCEEEEEET
T ss_pred EEEEEeeecCCCceEEEEeCCc-eeeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEecc
Confidence 5544444442 44889999999 579999999999999998765 4678999999888 45677888865
No 4
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS) {Bacillus stearothermophilus [TaxId: 1422]}
Probab=22.66 E-value=34 Score=27.95 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.0
Q ss_pred CCCCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeecC
Q 025423 35 PDSSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILEG 96 (253)
Q Consensus 35 ~d~~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~VkL~l~~ 96 (253)
.+...+.|.++|+|+.|.. .+.++||+-+ ..-..+|+..+|--+.+.+.+.-
T Consensus 30 q~~~~~~i~iAD~halt~~-----~~~~~l~~~~-----~~~~~~~lA~G~dp~k~~i~~qS 81 (326)
T d1i6la_ 30 QHEYNCYFCIVDQHAITVW-----QDPHELRQNI-----RRLAALYLAVGIDPTQATLFIQS 81 (326)
T ss_dssp TTTSEEEEEECHHHHTTSC-----CCHHHHHHHH-----HHHHHHHHHTTCCTTTSEEEEGG
T ss_pred hCCCCEEEEeehHHhhccC-----CCHHHHHHHH-----HHHHHHhhhhhccccceEEEeec
Confidence 3445689999999986543 3456777644 45558899999999999988863
No 5
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=22.53 E-value=22 Score=25.75 Aligned_cols=41 Identities=22% Similarity=0.225 Sum_probs=30.9
Q ss_pred cccCCCCCCccce-EEEEeCCCCCCeEEEEecccccchhhcccc
Q 025423 16 EWADSRSDSLGRF-LFHVSAPDSSHLLIQVTDFRSNTWEAKRSV 58 (253)
Q Consensus 16 e~~~~~s~~~~pf-LFh~~a~d~~hL~v~vTDfHS~tW~~slSv 58 (253)
+|.+ +.+--|+ -|++.+...+.|+|..+|-+-++|+++..+
T Consensus 63 ~~~~--svS~NP~~~F~~~~~~~g~l~v~~~Dn~G~~~~~~~~I 104 (106)
T d1v8ha1 63 RPGP--STSANPLYAFKFKAEKAGTFTIKLKDTDGDTGEASVKL 104 (106)
T ss_dssp CCCS--SCCSSCEEEEEEECCSCEEEEEEEEETTSCEEEEEEEE
T ss_pred EcCC--cccCCCeEEEEEccCCCceEEEEEEECCCCEEEEEEEE
Confidence 4444 3334554 478888888899999999999999988765
No 6
>d1xsza1 a.118.3.1 (A:1-197) RalF, N-terminal domain {Legionella pneumophila [TaxId: 446]}
Probab=18.21 E-value=18 Score=28.73 Aligned_cols=54 Identities=22% Similarity=0.340 Sum_probs=37.2
Q ss_pred eEEEEecccccch--hhccccchh-hhhHhhhcCCC-ChHHHHHHHHHhcccccceEee
Q 025423 40 LLIQVTDFRSNTW--EAKRSVLQL-DDMRDEIGIGG-SWSEFIDYVVASIKSEDVKLIL 94 (253)
Q Consensus 40 L~v~vTDfHS~tW--~~slSv~~L-eDlRD~VGIGG-SwsdF~dYl~~slsS~~VkL~l 94 (253)
+.++-||+|+-.= ...++.++- .++|..-+ |. ==.||++++.+++++...+|-|
T Consensus 139 iimLnTDlHnp~v~~k~kMt~~~Fi~n~r~~~~-~~~~~~e~L~~iY~~I~~~~~~l~~ 196 (197)
T d1xsza1 139 TIMLNTDLHNPSIPEKNKMTVDGLKRNLRGGNN-GGDFDAKFLEELYSEIKAKPFELNF 196 (197)
T ss_dssp HHHHHHHHHCTTSCGGGSCCHHHHHHHTTTTBT-TBCCCHHHHHHHHHHHHHSCCCCCB
T ss_pred HHHHhccccCccccccCCCCHHHHHHHHhcccC-CCCCCHHHHHHHHHHHhCCCeeeec
Confidence 4556699997643 456777654 55554332 33 3468999999999999988754
No 7
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=13.79 E-value=73 Score=25.82 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=41.5
Q ss_pred CeEEEEec--ccccchhhccccchhhhhHhhhcCCCC--hHHHHHHHHHhcccccceE
Q 025423 39 HLLIQVTD--FRSNTWEAKRSVLQLDDMRDEIGIGGS--WSEFIDYVVASIKSEDVKL 92 (253)
Q Consensus 39 hL~v~vTD--fHS~tW~~slSv~~LeDlRD~VGIGGS--wsdF~dYl~~slsS~~VkL 92 (253)
.+.+...| +..+.+++..|++.+|-|.|..+--|- |..|+.-+...|+-|-+=+
T Consensus 112 ~v~~~~~d~~~~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~ 169 (291)
T d1kpia_ 112 RKEVRIQGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRML 169 (291)
T ss_dssp CEEEEECCGGGCCCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEE
T ss_pred hhhhhhhcccccccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceE
Confidence 35555566 445789999999999999886554443 8999999999999877543
No 8
>d1vlra1 d.13.1.3 (A:146-337) mRNA decapping enzyme DcpS C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.55 E-value=41 Score=26.87 Aligned_cols=45 Identities=18% Similarity=0.258 Sum_probs=25.9
Q ss_pred cceEEEEeCCCCCCeEEEEe--cccccchhhccccchhhhhHhhhcCCC
Q 025423 26 GRFLFHVSAPDSSHLLIQVT--DFRSNTWEAKRSVLQLDDMRDEIGIGG 72 (253)
Q Consensus 26 ~pfLFh~~a~d~~hL~v~vT--DfHS~tW~~slSv~~LeDlRD~VGIGG 72 (253)
-.+.||. .|...|||+||. ||=+.. ...-----|+|+=+-+-+|+
T Consensus 117 ~Rig~H~-~PSv~HLHlHvi~~~~~~~g-~~~~ra~lL~dvI~nLe~~~ 163 (192)
T d1vlra1 117 LRVYLHY-LPSYYHLHVHFTALGFEAPG-SGVERAHLLAQVIENLECDP 163 (192)
T ss_dssp EEEEEES-SCSSSSCEEEEEETTSCCTT-CBTTTEEEHHHHHHHHHHCT
T ss_pred eEEEEEC-CCCEeeeEEEEEeccCCCCc-cccceeeeHHHHHHHHhcCc
Confidence 3577886 468999999997 443321 11111224666666555553
No 9
>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}
Probab=13.13 E-value=36 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.410 Sum_probs=13.0
Q ss_pred CCCCeEEEEeccccc
Q 025423 36 DSSHLLIQVTDFRSN 50 (253)
Q Consensus 36 d~~hL~v~vTDfHS~ 50 (253)
|.+.|..+++|.|.+
T Consensus 1 ~~~~lIlviSD~H~~ 15 (193)
T d2a22a1 1 DFGDLVLLIGDLKIP 15 (193)
T ss_dssp CCCEEEEEECCCCTT
T ss_pred CCCcEEEEEeCCCCC
Confidence 568899999999975
No 10
>d2guya1 b.71.1.1 (A:382-476) Fungal alpha-amylase {Aspergillus oryzae, Taka-amylase [TaxId: 5062]}
Probab=13.13 E-value=56 Score=23.39 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=20.0
Q ss_pred ceeeeeccCCCCeeEEeeccccchh
Q 025423 106 AKIVAQKSKGMPRISISLTRLTGSA 130 (253)
Q Consensus 106 akLVa~KaKGmP~ItI~L~~l~~sa 130 (253)
+-|-..-.+|+|||=+|-..+.++.
T Consensus 68 G~l~v~m~~G~PrV~~P~s~l~gSG 92 (95)
T d2guya1 68 GNVPVPMAGGLPRVLYPTEKLAGSK 92 (95)
T ss_dssp SCEEEEECTTCCEEEEEGGGGTTSS
T ss_pred CEEEEEecCCeeEEEEeHHHCcCCc
Confidence 3455666789999999999998864
Done!