BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025425
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GYH7|NSE2_ARATH E3 SUMO-protein ligase MMS21 OS=Arabidopsis thaliana GN=MMS21 PE=1
SV=1
Length = 249
Score = 295 bits (756), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 145/248 (58%), Positives = 190/248 (76%), Gaps = 3/248 (1%)
Query: 5 SASRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDAT 64
SAS D V GRI+NA+ L +DN++ + +IR+A+ M+K IAV LEK+NQ+ VK+LE++
Sbjct: 3 SASSSDGVAGRIQNASLVLVSDNSSTLADIRKAVAMMKNIAVQLEKENQTDKVKDLENSV 62
Query: 65 IQLMEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKLLVDEDAKSRAASSSVPPNDPL-HK 123
+L++ DC H S AIQSV N YQP +LTDFKKLL DE K +A SSVP ND L +
Sbjct: 63 AELLDLHSDCNHRSTAIQSVANRYQPVEQLTDFKKLLDDEFTKLKATPSSVPQNDHLMRQ 122
Query: 124 FREAVWNVHHAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIY 183
FREAVWNVHHAGE MPG++ EDIVMTSTQ +LN++CPLSGKP+TELA+PVRS++C+H+Y
Sbjct: 123 FREAVWNVHHAGEPMPGDDDEDIVMTSTQCPLLNMTCPLSGKPVTELADPVRSMDCRHVY 182
Query: 184 EKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKETARTDMIED 243
EK+ I YI + N NA CPVAGC KLQ SKV+CD++L +I+EMR +K++ R ++IED
Sbjct: 183 EKSVILHYIVN-NPNANCPVAGCRGKLQNSKVICDAMLKFEIEEMRSLNKQSNRAEVIED 241
Query: 244 FTA-VDEE 250
FT VDE+
Sbjct: 242 FTEDVDED 249
>sp|Q91VT1|NSE2_MOUSE E3 SUMO-protein ligase NSE2 OS=Mus musculus GN=Nsmce2 PE=2 SV=1
Length = 247
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 101/211 (47%), Gaps = 35/211 (16%)
Query: 16 IRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKE--LEDATIQLMEAFGD 73
I +A ++L N + I + + +A+DL + Q+++ E ++ A ++ + +
Sbjct: 20 IESALSSLKNFQSC----ISSGMDTVSSVALDL-VETQTEVSSEYSMDKAMVEFAKMDRE 74
Query: 74 CTHHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASSSVPPNDPLHKFRE 126
+H+ A+QS N + P +L KK L +D S A N+ +F++
Sbjct: 75 LSHYVKAVQSTINHVKEERPEKVPDLKLLVEKKFLALQDKNSDA---DFKENEKFVQFKQ 131
Query: 127 AV------WNVH--HAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVE 178
+ + +H +L G + ED+++T +Q+N + CP++ E+ +PV++
Sbjct: 132 QLRELKKQYGIHADRENDLTEGVD-EDMIVTQSQTNFI---CPITQ---LEMKKPVKNKM 184
Query: 179 CKHIYEKNAIQAYIKSKNANAR---CPVAGC 206
C H YE+ AI I+SK+ + CP GC
Sbjct: 185 CGHTYEEEAIVRMIESKHKRKKKACCPKIGC 215
>sp|Q4V8A0|NSE2_RAT E3 SUMO-protein ligase NSE2 OS=Rattus norvegicus GN=Nsmce2 PE=2
SV=1
Length = 247
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 114/239 (47%), Gaps = 35/239 (14%)
Query: 3 STSASRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKE--L 60
++ ++R+ + +G + +A ++L T I + + +A+DL + Q+++ E +
Sbjct: 8 NSGSTRYISFSG-VESALSSL----KTFQSCISSGMDTVSSVALDL-VETQTEVSSEYSM 61
Query: 61 EDATIQLMEAFGDCTHHSAAIQSVGNTYQ-------PGTELTDFKKLLVDEDAKSRAASS 113
+ A ++ + + H+ A+QS N + P +L KK L +D S A
Sbjct: 62 DKAMVEFAKMDRELNHYVKAVQSTINHVKEERPEKVPDLKLLVEKKFLALQDKNSDA--- 118
Query: 114 SVPPNDPLHKFREAVWNVH-----HAGELMPGEE--QEDIVMTSTQSNILNISCPLSGKP 166
N+ +F++ + + HA G E ED+++T +Q+N + CP++
Sbjct: 119 DFKENEKFVQFKQQLRELKKQYGIHADRENDGIEGMDEDMIVTQSQTNFI---CPITQ-- 173
Query: 167 ITELAEPVRSVECKHIYEKNAIQAYIKSKNANAR---CPVAGCPRK-LQVSKVVCDSLL 221
E+ +PV++ C H YE+ AI I+SK+ + CP GC +++S ++ D L
Sbjct: 174 -LEMKKPVKNKMCGHTYEEEAIVRMIESKHKRKKKACCPKIGCSHTDMRMSDLIPDEAL 231
>sp|Q4PIR3|NSE2_SCHPO E3 SUMO-protein ligase nse2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=nse2 PE=1 SV=3
Length = 250
Score = 51.6 bits (122), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 54/111 (48%), Gaps = 20/111 (18%)
Query: 123 KFREAVWNVHHAG-----------ELMPGEEQE-DIVMTSTQSNILNISCPLSGKPITEL 170
+F++ +W+ + +M EEQE D VM + + + CPL+ +PI
Sbjct: 132 EFKKTIWHEQNTDGSDFPSMKTFFNVMNTEEQEADEVMVYSAT--FDNRCPLTLQPI--- 186
Query: 171 AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLL 221
P+ S C H YEK+AI + + N CPV GC +LQ S + D +L
Sbjct: 187 VHPILSTACNHFYEKDAILSLL---NPTCVCPVVGCEARLQRSLLKEDEIL 234
>sp|Q7ZXH2|NSE2_XENLA E3 SUMO-protein ligase NSE2 OS=Xenopus laevis GN=nsmce2 PE=2 SV=1
Length = 238
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 16/119 (13%)
Query: 118 NDPLHKFREAVWNVH-HAGELMPGEE-----QEDIVMTSTQSNILNISCPLSGKPITELA 171
ND +F++ + + GE G+ EDI + +Q N+ +CP++ E+
Sbjct: 117 NDRFVQFKDQLREMRKQMGEKEEGDAAFENVDEDIAVLPSQQNL---TCPITQ---MEMT 170
Query: 172 EPVRSVECKHIYEKNAIQAYIK---SKNANARCPVAGCPRK-LQVSKVVCDSLLLVDID 226
PV++ C H YEK AI+ I+ K +CP GC +Q+S +V D+ L ID
Sbjct: 171 NPVKNKVCGHTYEKEAIERMIQDRHQKKKRVKCPKVGCVHSDMQISDLVPDTALKRTID 229
>sp|Q96MF7|NSE2_HUMAN E3 SUMO-protein ligase NSE2 OS=Homo sapiens GN=NSMCE2 PE=1 SV=2
Length = 247
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 44 IAVDLEKDNQSQMVKE--LEDATIQLMEAFGDCTHHSAAIQSVGNTYQ-------PGTEL 94
+A+DL ++Q+++ E ++ A ++ H+ A+QS N + P +L
Sbjct: 44 VALDL-VESQTEVSSEYSMDKAMVEFATLDRQLNHYVKAVQSTINHVKEERPEKIPDLKL 102
Query: 95 TDFKKLLVDEDAKSRAASSSVPPNDPLHKFREAVWNVHHAGELMPGEE-------QEDIV 147
KK L +S+ + + N+ +F++ + + L E EDI+
Sbjct: 103 LVEKKFLA---LQSKNSDADFQNNEKFVQFKQQLKELKKQCGLQADREADGTEGVDEDII 159
Query: 148 MTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKN---ANARCPVA 204
+T +Q+N +CP++ + E+ +PV++ C H YE++AI I+S+ A CP
Sbjct: 160 VTQSQTNF---TCPITKE---EMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQI 213
Query: 205 GC 206
GC
Sbjct: 214 GC 215
>sp|Q32KY9|NSE2_BOVIN E3 SUMO-protein ligase NSE2 OS=Bos taurus GN=NSMCE2 PE=2 SV=1
Length = 248
Score = 47.4 bits (111), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 99/212 (46%), Gaps = 30/212 (14%)
Query: 44 IAVDLEKDNQSQMVKE--LEDATIQLMEAFGDCTHHSAAIQSVGNTYQ-------PGTEL 94
+A+DL + Q+++ E ++ A ++ + H+ A+QS N + P +L
Sbjct: 46 VALDL-VETQTEVSSEYSMDKAMVEFAMMDRELNHYLKAVQSTINHVKEERSEKIPDLKL 104
Query: 95 TDFKKLLVDEDAKSRAASSSVPPNDPLHKFREAVWNVHHAGELMPGEE-------QEDIV 147
KK L ++ S A N+ +F++ + + L E ED++
Sbjct: 105 LVEKKFLALQNKNSDA---DFQNNEKFVQFKQQLKELKKQYGLQSDREADITEGVDEDMI 161
Query: 148 MTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANAR---CPVA 204
+T +Q+N + CP++ E+ +PV++ C H YE+ AI I+SK+ + CP
Sbjct: 162 VTQSQTNFI---CPITQ---LEMKKPVKNKVCGHTYEEEAIVRMIESKHERKKKACCPKI 215
Query: 205 GCPR-KLQVSKVVCDSLLLVDIDEMRRTSKET 235
GC +++S ++ D L I+ ++ +++
Sbjct: 216 GCSHVDMRMSDLIQDEALRRAIESHKKRRRQS 247
>sp|O94451|PLI1_SCHPO E3 SUMO-protein ligase pli1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=pli1 PE=1 SV=3
Length = 727
Score = 40.4 bits (93), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 11/79 (13%)
Query: 145 DIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCP 202
DI+ TST +++ CPLS + ++ PVRSV CKHI ++ +A + + + CP
Sbjct: 293 DIIATSTD---ISLKCPLS---FSRISLPVRSVFCKHIQCFDASAFLE-MNKQTPSWMCP 345
Query: 203 VAGCPRKLQVSKVVCDSLL 221
V C +Q S ++ D +
Sbjct: 346 V--CASHIQFSDLIIDGFM 362
>sp|Q9C5A4|ARI16_ARATH Probable E3 ubiquitin-protein ligase ARI16 OS=Arabidopsis thaliana
GN=ARI16 PE=2 SV=1
Length = 500
Score = 35.8 bits (81), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 44/92 (47%), Gaps = 10/92 (10%)
Query: 122 HKFREAVWNVHHAGELMPGEEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKH 181
HKF W+ + + L +EQ ++ +Q + ++ I +L EPV K
Sbjct: 98 HKFSTTCWSEYLSDALKKNKEQRGLISCLSQDCVASV----GPDTIEQLTEPV-----KE 148
Query: 182 IYEKNAIQAYIKSKNANAR-CPVAGCPRKLQV 212
+YE ++++++ A + CP +GC +++
Sbjct: 149 MYENYILESFMECHKATIKWCPASGCEYAVEL 180
>sp|A5GWG3|ISPH_SYNR3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase
OS=Synechococcus sp. (strain RCC307) GN=ispH PE=3 SV=1
Length = 406
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
RR G +E+A LE+ QS++++ + + TI+L EAFG C
Sbjct: 18 RRGFGRAEEVAGSLEQAYQSELIQSIRENGYELREGRVTIRLAEAFGFC 66
>sp|P58674|ISPH_NOSS1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=ispH PE=3 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFC 66
>sp|Q3M8X6|ISPH_ANAVT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Anabaena
variabilis (strain ATCC 29413 / PCC 7937) GN=ispH PE=3
SV=1
Length = 402
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSSLIQEIRDRNYTLQRGDVTIRLAQAFGFC 66
>sp|Q9ZU51|RHA2B_ARATH Probable E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana
GN=RHA2B PE=1 SV=2
Length = 147
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 171 AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207
E VR ++C+H++ K ++ +++ N N CP+ P
Sbjct: 84 GEEVRKLDCRHVFHKQCLEGWLQHLNFN--CPLCRSP 118
>sp|B2IZV5|ISPH_NOSP7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase OS=Nostoc
punctiforme (strain ATCC 29133 / PCC 73102) GN=ispH
PE=3 SV=1
Length = 402
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 9/49 (18%)
Query: 35 RRALGMIKEIAVDLEKDNQSQMVKELED---------ATIQLMEAFGDC 74
R+ G E+A L+ + QS +++E+ D TI+L +AFG C
Sbjct: 18 RKGFGHQAEVATQLQSEYQSNLIQEIRDRNYILQRGDVTIRLAQAFGFC 66
>sp|P54389|YPIA_BACSU TPR repeat-containing protein YpiA OS=Bacillus subtilis (strain
168) GN=ypiA PE=4 SV=1
Length = 423
Score = 32.7 bits (73), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 61 EDATI--QLMEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKLL---VDEDAKSRAASSSV 115
ED I QL +GD + I + + Y TELT+F L +DE+ K+ A ++
Sbjct: 34 EDKAIAAQLYYEWGDVEKAISLISDLHDLYPNETELTNFYAELLIDIDEEEKALAVLETI 93
Query: 116 PPNDP 120
P DP
Sbjct: 94 PETDP 98
>sp|Q04195|SIZ1_YEAST E3 SUMO-protein ligase SIZ1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SIZ1 PE=1 SV=1
Length = 904
Score = 32.0 bits (71), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 142 EQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARC 201
E E++ +T+T S I+++ CP+S T + P +S+ CKH+ +A+ ++ S+ +
Sbjct: 344 EDEEMGLTTT-STIMSLQCPIS---YTRMKYPSKSINCKHLQCFDALW-FLHSQ---LQI 395
Query: 202 PVAGCP 207
P CP
Sbjct: 396 PTWQCP 401
>sp|P87176|SLX8_SCHPO E3 ubiquitin-protein ligase complex slx8-rfp subunit slx8
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=slx8 PE=1 SV=1
Length = 269
Score = 32.0 bits (71), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 179 CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLL 222
C HI+ I + + + A +CPV C RK+ +KV+C ++L
Sbjct: 221 CGHIFCNFCILSALGTTAATQKCPV--CRRKVHPNKVICLEMML 262
>sp|Q6ZPS6|AKIB1_MOUSE Ankyrin repeat and IBR domain-containing protein 1 OS=Mus musculus
GN=Ankib1 PE=1 SV=2
Length = 1085
Score = 31.6 bits (70), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 157 NISCP----LSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212
NI CP P+ ++ E V S E Y + I+A++++ A CP AGC R +++
Sbjct: 376 NIFCPAYECFQLVPV-DVIESVVSKEMDKRYLQFDIKAFVENNPAIKWCPTAGCERAVRL 434
Query: 213 SK 214
+K
Sbjct: 435 TK 436
>sp|Q9RUP8|SYI_DEIRA Isoleucine--tRNA ligase OS=Deinococcus radiodurans (strain ATCC
13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 /
NCIMB 9279 / R1 / VKM B-1422) GN=ileS PE=3 SV=1
Length = 1078
Score = 31.6 bits (70), Expect = 5.6, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 45 AVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHS--AAIQSVGNTYQPGTELTDFKKLLV 102
A+D K +Q+Q+++EL + +E D +S + VG Y G +L KK L
Sbjct: 878 ALDALKRSQTQIMEELNVKAVTFLEGDTDLVQYSLRPNLPVVGKQY--GKQLPVLKKALT 935
Query: 103 DEDAKSRAAS 112
+ DA++ A +
Sbjct: 936 EADARAVATA 945
>sp|Q54VX5|EXOC2_DICDI Exocyst complex component 2 OS=Dictyostelium discoideum GN=exoc2
PE=3 SV=1
Length = 1095
Score = 31.2 bits (69), Expect = 7.0, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 6/58 (10%)
Query: 28 NTVIGEIR-RALG-MIKEIAVDLEK----DNQSQMVKELEDATIQLMEAFGDCTHHSA 79
N V G I R +G + I V+L K N+ ++ +E A + +E+FGDC HH A
Sbjct: 710 NQVDGMITTRLMGEFVNTIKVNLAKLSFLSNKPMLLPSVESALCEAIESFGDCLHHLA 767
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.127 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,778,534
Number of Sequences: 539616
Number of extensions: 3362166
Number of successful extensions: 7785
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7777
Number of HSP's gapped (non-prelim): 29
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)