Query 025425
Match_columns 253
No_of_seqs 196 out of 1174
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 05:39:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025425.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025425hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11789 zf-Nse: Zinc-finger o 99.8 2.9E-20 6.3E-25 131.2 2.0 57 144-207 1-57 (57)
2 KOG2979 Protein involved in DN 99.8 5.2E-18 1.1E-22 150.6 11.2 88 153-252 172-261 (262)
3 PF04564 U-box: U-box domain; 99.5 9.7E-15 2.1E-19 107.7 4.1 69 157-233 4-72 (73)
4 smart00504 Ubox Modified RING 99.5 4E-14 8.6E-19 100.3 5.3 62 158-228 2-63 (63)
5 COG5627 MMS21 DNA repair prote 99.4 1.8E-13 3.9E-18 120.2 7.6 104 120-230 145-260 (275)
6 PF15227 zf-C3HC4_4: zinc fing 99.1 4.6E-11 1E-15 79.2 2.8 40 160-203 1-41 (42)
7 PLN03208 E3 ubiquitin-protein 99.1 9.7E-11 2.1E-15 101.1 4.9 56 157-218 18-86 (193)
8 KOG0320 Predicted E3 ubiquitin 99.0 1.3E-10 2.8E-15 98.6 2.6 53 157-216 131-183 (187)
9 TIGR00599 rad18 DNA repair pro 99.0 6.4E-10 1.4E-14 105.8 5.4 69 157-234 26-94 (397)
10 PF13923 zf-C3HC4_2: Zinc fing 98.9 1.6E-09 3.5E-14 70.3 2.6 38 160-203 1-38 (39)
11 TIGR00570 cdk7 CDK-activating 98.7 1.5E-08 3.4E-13 93.2 6.3 68 157-231 3-78 (309)
12 COG5222 Uncharacterized conser 98.7 1.1E-08 2.5E-13 93.2 4.7 70 154-230 271-341 (427)
13 KOG2164 Predicted E3 ubiquitin 98.7 1.1E-08 2.3E-13 98.9 3.3 57 157-219 186-244 (513)
14 PF14835 zf-RING_6: zf-RING of 98.6 7E-09 1.5E-13 74.5 0.9 59 157-225 7-65 (65)
15 PF00097 zf-C3HC4: Zinc finger 98.6 2.6E-08 5.7E-13 64.8 3.1 40 160-203 1-40 (41)
16 PF13445 zf-RING_UBOX: RING-ty 98.6 3E-08 6.6E-13 66.1 2.2 38 160-202 1-43 (43)
17 KOG0287 Postreplication repair 98.5 3.3E-08 7.1E-13 91.5 1.9 64 157-229 23-86 (442)
18 KOG0823 Predicted E3 ubiquitin 98.5 9.2E-08 2E-12 84.4 3.8 55 157-217 47-101 (230)
19 PF13639 zf-RING_2: Ring finge 98.4 9.5E-08 2.1E-12 63.3 1.9 43 159-207 2-44 (44)
20 KOG0978 E3 ubiquitin ligase in 98.4 5.7E-07 1.2E-11 90.5 7.3 53 157-217 643-695 (698)
21 KOG2177 Predicted E3 ubiquitin 98.4 3.5E-07 7.6E-12 79.7 4.2 66 157-233 13-78 (386)
22 cd00162 RING RING-finger (Real 98.3 5.2E-07 1.1E-11 58.1 3.8 45 159-210 1-45 (45)
23 COG5432 RAD18 RING-finger-cont 98.3 2.9E-07 6.3E-12 83.8 2.9 65 157-230 25-89 (391)
24 KOG0317 Predicted E3 ubiquitin 98.3 3E-07 6.5E-12 83.5 2.8 51 157-216 239-289 (293)
25 PF02891 zf-MIZ: MIZ/SP-RING z 98.3 7.2E-07 1.6E-11 61.3 3.1 47 156-208 1-49 (50)
26 PHA02929 N1R/p28-like protein; 98.2 1E-06 2.2E-11 78.8 3.6 48 157-211 174-227 (238)
27 PF13920 zf-C3HC4_3: Zinc fing 98.2 1.4E-06 3E-11 59.3 2.8 46 157-211 2-48 (50)
28 PF14634 zf-RING_5: zinc-RING 98.1 2.2E-06 4.7E-11 57.0 3.1 44 159-208 1-44 (44)
29 smart00184 RING Ring finger. E 98.1 3.6E-06 7.8E-11 52.2 3.4 38 160-203 1-38 (39)
30 KOG0311 Predicted E3 ubiquitin 98.1 6.1E-07 1.3E-11 83.5 -0.5 69 154-229 40-109 (381)
31 COG5574 PEX10 RING-finger-cont 98.0 2.9E-06 6.2E-11 76.4 2.4 53 156-215 214-266 (271)
32 KOG2660 Locus-specific chromos 98.0 3.7E-06 8E-11 77.7 2.6 62 156-225 14-79 (331)
33 KOG0297 TNF receptor-associate 97.8 1.5E-05 3.2E-10 76.2 3.3 64 156-227 20-84 (391)
34 PHA02926 zinc finger-like prot 97.7 3E-05 6.5E-10 68.5 3.8 50 157-211 170-230 (242)
35 PF04641 Rtf2: Rtf2 RING-finge 97.4 0.00014 3.1E-09 65.7 3.7 56 155-216 111-166 (260)
36 KOG1813 Predicted E3 ubiquitin 97.4 6E-05 1.3E-09 68.9 1.0 64 154-227 238-301 (313)
37 KOG2879 Predicted E3 ubiquitin 97.3 0.00017 3.7E-09 65.5 3.4 50 155-210 237-286 (298)
38 COG5152 Uncharacterized conser 97.3 0.00011 2.4E-09 64.0 1.8 55 145-209 185-239 (259)
39 KOG2169 Zn-finger transcriptio 97.2 0.00043 9.3E-09 70.1 5.1 81 141-230 293-375 (636)
40 KOG0826 Predicted E3 ubiquitin 97.1 0.00019 4.2E-09 66.5 1.8 48 157-210 300-347 (357)
41 PF12678 zf-rbx1: RING-H2 zinc 97.1 0.00038 8.3E-09 51.2 2.7 44 159-207 21-73 (73)
42 KOG1002 Nucleotide excision re 97.0 0.00038 8.2E-09 68.2 2.4 55 157-217 536-592 (791)
43 COG5220 TFB3 Cdk activating ki 96.8 0.00044 9.4E-09 61.9 0.9 71 156-230 9-87 (314)
44 PF12861 zf-Apc11: Anaphase-pr 96.7 0.0023 4.9E-08 48.7 3.8 54 155-212 30-83 (85)
45 KOG2817 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 61.8 2.9 53 157-212 334-386 (394)
46 KOG3039 Uncharacterized conser 96.4 0.002 4.2E-08 58.0 2.6 54 156-217 220-276 (303)
47 KOG0824 Predicted E3 ubiquitin 96.4 0.0018 3.9E-08 59.6 2.0 48 157-212 7-54 (324)
48 KOG3800 Predicted E3 ubiquitin 96.3 0.0048 1E-07 56.5 4.6 65 159-229 2-73 (300)
49 KOG3113 Uncharacterized conser 96.3 0.0022 4.7E-08 57.8 2.3 53 157-216 111-163 (293)
50 KOG0289 mRNA splicing factor [ 96.1 0.0035 7.6E-08 60.3 2.7 52 158-217 1-52 (506)
51 COG5540 RING-finger-containing 96.1 0.0035 7.6E-08 57.9 2.5 50 158-212 324-373 (374)
52 KOG4159 Predicted E3 ubiquitin 96.1 0.0031 6.8E-08 60.5 2.2 47 156-211 83-129 (398)
53 KOG3039 Uncharacterized conser 96.0 0.0041 8.9E-08 55.9 2.2 32 159-194 45-76 (303)
54 KOG0802 E3 ubiquitin ligase [P 95.9 0.0043 9.3E-08 61.7 2.1 46 157-211 291-341 (543)
55 KOG4628 Predicted E3 ubiquitin 95.8 0.0065 1.4E-07 57.3 3.0 50 158-212 230-279 (348)
56 KOG1645 RING-finger-containing 95.6 0.0053 1.1E-07 58.7 1.6 58 158-221 5-66 (463)
57 KOG0828 Predicted E3 ubiquitin 95.4 0.008 1.7E-07 58.7 2.1 50 157-211 571-634 (636)
58 KOG4642 Chaperone-dependent E3 95.4 0.015 3.3E-07 52.5 3.7 67 158-232 212-278 (284)
59 KOG1814 Predicted E3 ubiquitin 94.9 0.011 2.3E-07 56.7 1.3 55 157-213 184-244 (445)
60 KOG1001 Helicase-like transcri 94.9 0.0045 9.8E-08 63.2 -1.5 53 158-218 455-507 (674)
61 KOG1941 Acetylcholine receptor 94.9 0.023 5E-07 54.3 3.3 169 30-208 218-413 (518)
62 COG5243 HRD1 HRD ubiquitin lig 94.8 0.024 5.1E-07 53.9 3.3 47 157-211 287-345 (491)
63 KOG1812 Predicted E3 ubiquitin 94.8 0.02 4.4E-07 54.8 2.7 57 156-215 145-207 (384)
64 KOG4362 Transcriptional regula 94.3 0.015 3.2E-07 59.1 0.5 69 156-230 20-88 (684)
65 KOG0804 Cytoplasmic Zn-finger 94.2 0.014 3.1E-07 56.4 0.3 45 158-212 176-223 (493)
66 COG5109 Uncharacterized conser 94.0 0.032 6.9E-07 51.9 2.2 52 157-211 336-387 (396)
67 KOG2042 Ubiquitin fusion degra 94.0 0.094 2E-06 55.1 5.8 67 156-230 869-935 (943)
68 KOG4367 Predicted Zn-finger pr 93.2 0.041 8.9E-07 53.3 1.5 35 157-195 4-38 (699)
69 PF04641 Rtf2: Rtf2 RING-finge 93.0 0.12 2.7E-06 46.7 4.1 36 157-195 34-69 (260)
70 KOG0825 PHD Zn-finger protein 92.6 0.011 2.4E-07 60.6 -3.4 50 156-213 122-173 (1134)
71 PF11793 FANCL_C: FANCL C-term 92.5 0.03 6.6E-07 40.8 -0.4 52 157-212 2-67 (70)
72 KOG1734 Predicted RING-contain 92.4 0.029 6.2E-07 51.2 -0.8 59 157-219 224-289 (328)
73 KOG1815 Predicted E3 ubiquitin 91.8 0.15 3.2E-06 49.6 3.4 54 157-213 70-128 (444)
74 KOG0827 Predicted E3 ubiquitin 91.6 0.13 2.7E-06 49.3 2.5 48 157-207 4-52 (465)
75 KOG4172 Predicted E3 ubiquitin 91.2 0.077 1.7E-06 37.2 0.5 44 157-210 7-53 (62)
76 KOG4185 Predicted E3 ubiquitin 90.2 0.29 6.2E-06 44.6 3.5 66 158-228 4-77 (296)
77 KOG1039 Predicted E3 ubiquitin 89.6 0.24 5.2E-06 46.8 2.5 50 156-209 160-219 (344)
78 KOG1493 Anaphase-promoting com 88.6 0.17 3.7E-06 37.9 0.6 54 155-212 29-82 (84)
79 COG5219 Uncharacterized conser 87.8 0.24 5.3E-06 52.2 1.3 50 158-211 1470-1523(1525)
80 smart00744 RINGv The RING-vari 87.6 0.78 1.7E-05 31.1 3.3 43 160-207 2-49 (49)
81 KOG4692 Predicted E3 ubiquitin 86.8 0.42 9.1E-06 45.4 2.1 45 157-210 422-466 (489)
82 COG3364 Zn-ribbon containing p 86.6 0.35 7.7E-06 38.0 1.3 32 173-211 2-33 (112)
83 KOG4739 Uncharacterized protei 86.0 0.34 7.3E-06 43.5 1.0 51 159-218 5-55 (233)
84 KOG1785 Tyrosine kinase negati 85.8 0.24 5.2E-06 47.7 -0.0 46 159-211 371-416 (563)
85 COG5113 UFD2 Ubiquitin fusion 84.4 1.9 4.2E-05 44.0 5.5 71 156-234 853-923 (929)
86 PF10571 UPF0547: Uncharacteri 83.9 0.63 1.4E-05 27.6 1.2 24 159-184 2-25 (26)
87 KOG2979 Protein involved in DN 83.1 6.6 0.00014 35.8 7.9 50 155-211 211-260 (262)
88 smart00064 FYVE Protein presen 80.7 1.2 2.6E-05 31.5 2.0 36 158-193 11-46 (68)
89 PHA00626 hypothetical protein 80.5 1.3 2.7E-05 31.3 1.9 28 159-190 13-40 (59)
90 TIGR02300 FYDLN_acid conserved 80.2 1.1 2.4E-05 36.6 1.8 30 157-186 9-39 (129)
91 PHA03096 p28-like protein; Pro 79.5 1.3 2.7E-05 41.0 2.1 44 158-203 179-228 (284)
92 cd00065 FYVE FYVE domain; Zinc 79.0 1.6 3.4E-05 29.7 2.0 36 158-193 3-38 (57)
93 COG5175 MOT2 Transcriptional r 78.7 1.7 3.6E-05 41.2 2.7 47 160-211 17-64 (480)
94 PF01363 FYVE: FYVE zinc finge 77.9 0.51 1.1E-05 33.6 -0.8 33 157-189 9-41 (69)
95 PF09845 DUF2072: Zn-ribbon co 77.9 1.3 2.8E-05 36.4 1.5 30 173-209 1-30 (131)
96 KOG3161 Predicted E3 ubiquitin 77.4 1.2 2.5E-05 45.4 1.3 64 157-226 11-77 (861)
97 PF14570 zf-RING_4: RING/Ubox 76.6 2.9 6.2E-05 28.5 2.7 46 160-210 1-47 (48)
98 PF10367 Vps39_2: Vacuolar sor 76.6 1.3 2.8E-05 33.6 1.2 36 146-189 73-108 (109)
99 KOG0883 Cyclophilin type, U bo 74.4 2.7 5.9E-05 40.5 2.9 34 158-195 41-74 (518)
100 KOG2462 C2H2-type Zn-finger pr 74.4 2.7 5.9E-05 38.6 2.8 55 155-211 159-226 (279)
101 KOG2114 Vacuolar assembly/sort 74.1 1.8 4E-05 45.2 1.8 40 158-208 841-880 (933)
102 cd00350 rubredoxin_like Rubred 73.6 1.6 3.5E-05 27.0 0.8 21 177-208 5-25 (33)
103 PF09538 FYDLN_acid: Protein o 73.5 2.1 4.6E-05 33.9 1.7 30 157-186 9-39 (108)
104 KOG2930 SCF ubiquitin ligase, 71.4 3 6.6E-05 33.0 2.1 27 178-209 80-106 (114)
105 PF03915 AIP3: Actin interacti 69.8 67 0.0014 31.4 11.3 85 14-107 202-286 (424)
106 COG5194 APC11 Component of SCF 69.4 2.9 6.4E-05 31.6 1.5 52 157-213 31-83 (88)
107 PRK11088 rrmA 23S rRNA methylt 68.7 2.4 5.1E-05 38.1 1.1 29 157-186 2-30 (272)
108 KOG2034 Vacuolar sorting prote 68.7 2.6 5.6E-05 44.3 1.5 36 157-194 817-852 (911)
109 KOG4265 Predicted E3 ubiquitin 66.7 3.8 8.3E-05 38.8 2.1 46 157-211 290-336 (349)
110 KOG1940 Zn-finger protein [Gen 66.5 4.1 8.8E-05 37.5 2.1 48 156-208 157-204 (276)
111 smart00806 AIP3 Actin interact 66.1 62 0.0013 31.7 10.1 78 21-107 213-290 (426)
112 PF14353 CpXC: CpXC protein 64.4 4.2 9E-05 32.5 1.6 56 158-219 2-59 (128)
113 KOG3002 Zn finger protein [Gen 63.5 6.9 0.00015 36.4 3.1 55 158-228 49-105 (299)
114 COG4530 Uncharacterized protei 63.1 5.8 0.00013 31.8 2.2 34 157-190 9-43 (129)
115 PF12660 zf-TFIIIC: Putative z 62.8 2 4.4E-05 33.4 -0.5 47 158-209 15-64 (99)
116 KOG3899 Uncharacterized conser 61.9 4.8 0.0001 37.5 1.7 41 173-215 319-369 (381)
117 PF14447 Prok-RING_4: Prokaryo 61.6 4.8 0.0001 28.2 1.3 31 177-214 23-53 (55)
118 PF12126 DUF3583: Protein of u 61.3 1.4E+02 0.0031 27.9 11.3 65 66-130 69-146 (324)
119 TIGR02605 CxxC_CxxC_SSSS putat 61.1 2.4 5.3E-05 28.5 -0.3 27 176-208 8-34 (52)
120 PF05290 Baculo_IE-1: Baculovi 59.9 14 0.0003 30.6 3.9 54 157-214 80-135 (140)
121 PF06416 DUF1076: Protein of u 58.5 12 0.00025 30.0 3.1 51 157-213 40-93 (113)
122 KOG0298 DEAD box-containing he 58.5 2.6 5.6E-05 46.0 -0.7 44 157-208 1153-1196(1394)
123 KOG4514 Uncharacterized conser 57.9 58 0.0013 28.5 7.5 39 12-50 126-164 (222)
124 KOG4797 Transcriptional regula 57.6 76 0.0016 25.4 7.5 62 4-69 20-81 (123)
125 cd00729 rubredoxin_SM Rubredox 57.4 5.6 0.00012 24.9 1.0 22 176-208 5-26 (34)
126 PF14446 Prok-RING_1: Prokaryo 57.2 13 0.00028 25.9 2.9 48 157-211 5-52 (54)
127 PF05605 zf-Di19: Drought indu 57.2 12 0.00025 25.5 2.6 35 157-209 2-40 (54)
128 KOG1571 Predicted E3 ubiquitin 56.7 4.2 9.1E-05 38.6 0.4 43 157-211 305-347 (355)
129 PF02318 FYVE_2: FYVE-type zin 56.6 4.3 9.4E-05 32.3 0.4 48 157-208 54-102 (118)
130 PLN02189 cellulose synthase 56.2 8.2 0.00018 41.5 2.5 50 158-211 35-87 (1040)
131 PF13719 zinc_ribbon_5: zinc-r 55.3 5.2 0.00011 25.4 0.6 12 197-210 24-35 (37)
132 PF13717 zinc_ribbon_4: zinc-r 55.2 5.8 0.00013 25.1 0.8 8 158-165 3-10 (36)
133 PF07191 zinc-ribbons_6: zinc- 54.8 0.93 2E-05 33.3 -3.3 40 158-211 2-41 (70)
134 PLN03086 PRLI-interacting fact 54.1 13 0.00027 37.7 3.3 31 172-202 452-482 (567)
135 KOG2066 Vacuolar assembly/sort 52.9 14 0.0003 38.6 3.4 36 159-195 786-825 (846)
136 PF10157 DUF2365: Uncharacteri 52.1 1.2E+02 0.0026 25.4 8.4 41 11-51 52-92 (149)
137 smart00531 TFIIE Transcription 51.8 7.6 0.00017 32.0 1.2 15 197-213 122-136 (147)
138 PRK11827 hypothetical protein; 51.4 10 0.00022 27.0 1.6 10 158-167 9-18 (60)
139 KOG4718 Non-SMC (structural ma 51.3 7.3 0.00016 34.6 1.0 43 158-208 182-224 (235)
140 cd01408 SIRT1 SIRT1: Eukaryoti 51.2 19 0.00041 32.0 3.7 33 178-213 121-153 (235)
141 PLN02436 cellulose synthase A 50.3 11 0.00024 40.8 2.3 50 158-211 37-89 (1094)
142 COG3813 Uncharacterized protei 50.0 13 0.00028 27.6 2.0 44 180-230 28-71 (84)
143 PHA00732 hypothetical protein 49.4 21 0.00046 26.5 3.2 36 174-211 2-38 (79)
144 smart00834 CxxC_CXXC_SSSS Puta 49.1 4.1 9E-05 25.7 -0.6 12 197-210 25-36 (41)
145 KOG3268 Predicted E3 ubiquitin 47.2 16 0.00034 31.8 2.4 37 175-213 186-230 (234)
146 PF09723 Zn-ribbon_8: Zinc rib 45.8 2.7 5.9E-05 27.4 -1.9 28 175-208 7-34 (42)
147 KOG2462 C2H2-type Zn-finger pr 45.6 26 0.00056 32.3 3.7 55 156-212 129-199 (279)
148 PF10498 IFT57: Intra-flagella 45.3 1.7E+02 0.0037 27.9 9.3 68 12-85 224-293 (359)
149 PF02146 SIR2: Sir2 family; I 45.2 14 0.00031 30.9 1.9 33 178-213 110-142 (178)
150 PRK14138 NAD-dependent deacety 45.0 24 0.00053 31.5 3.4 33 178-213 124-156 (244)
151 PLN03086 PRLI-interacting fact 44.7 31 0.00068 34.9 4.4 53 158-213 454-517 (567)
152 PF10272 Tmpp129: Putative tra 44.1 17 0.00037 34.7 2.3 35 179-215 311-355 (358)
153 PF01530 zf-C2HC: Zinc finger, 43.9 12 0.00026 23.2 0.8 11 199-209 2-12 (31)
154 smart00647 IBR In Between Ring 43.5 24 0.00051 24.0 2.5 31 183-213 3-33 (64)
155 PRK01343 zinc-binding protein; 43.4 12 0.00027 26.4 1.0 12 156-167 8-19 (57)
156 TIGR01206 lysW lysine biosynth 43.2 9 0.00019 26.7 0.3 33 157-212 2-34 (54)
157 COG3357 Predicted transcriptio 43.1 7 0.00015 30.2 -0.3 31 169-208 54-84 (97)
158 KOG3970 Predicted E3 ubiquitin 42.2 58 0.0013 29.5 5.2 54 159-216 52-111 (299)
159 PF03884 DUF329: Domain of unk 42.0 14 0.0003 26.1 1.1 11 157-167 2-12 (57)
160 PF10157 DUF2365: Uncharacteri 42.0 2.1E+02 0.0045 24.0 8.4 19 61-79 122-140 (149)
161 COG3024 Uncharacterized protei 41.6 13 0.00028 26.9 0.9 13 155-167 5-17 (65)
162 smart00659 RPOLCX RNA polymera 40.8 21 0.00045 23.7 1.7 11 197-209 18-28 (44)
163 PF08746 zf-RING-like: RING-li 40.6 27 0.00058 22.9 2.2 25 178-203 18-42 (43)
164 PHA02862 5L protein; Provision 40.4 33 0.00071 28.9 3.2 50 158-215 3-57 (156)
165 PF15290 Syntaphilin: Golgi-lo 39.4 3E+02 0.0066 25.6 9.5 65 14-90 75-142 (305)
166 PF08265 YL1_C: YL1 nuclear pr 38.9 19 0.00041 22.1 1.2 16 159-175 2-17 (30)
167 KOG2932 E3 ubiquitin ligase in 38.3 14 0.00029 34.9 0.7 39 159-207 92-130 (389)
168 cd01410 SIRT7 SIRT7: Eukaryoti 38.3 40 0.00086 29.3 3.6 14 198-213 120-133 (206)
169 cd01407 SIR2-fam SIR2 family o 38.1 37 0.0008 29.6 3.4 32 179-213 115-146 (218)
170 PHA02825 LAP/PHD finger-like p 36.0 56 0.0012 27.8 4.0 49 156-211 7-59 (162)
171 PRK06266 transcription initiat 36.0 41 0.00088 28.8 3.3 31 198-230 136-167 (178)
172 PF13779 DUF4175: Domain of un 35.5 1.8E+02 0.0038 31.0 8.4 41 10-52 426-466 (820)
173 PF03966 Trm112p: Trm112p-like 35.5 18 0.00039 25.8 0.8 8 157-164 53-60 (68)
174 KOG0314 Predicted E3 ubiquitin 34.4 20 0.00043 35.3 1.2 66 154-227 216-283 (448)
175 KOG3647 Predicted coiled-coil 34.3 2.4E+02 0.0052 26.2 8.0 47 60-106 128-182 (338)
176 KOG0883 Cyclophilin type, U bo 33.6 47 0.001 32.3 3.5 36 156-191 100-135 (518)
177 KOG4445 Uncharacterized conser 33.3 12 0.00026 35.1 -0.5 38 155-194 113-151 (368)
178 PF06906 DUF1272: Protein of u 33.2 44 0.00096 23.6 2.4 29 178-213 24-54 (57)
179 PF01485 IBR: IBR domain; Int 32.8 8.4 0.00018 26.2 -1.2 28 188-215 8-35 (64)
180 COG1655 Uncharacterized protei 32.8 28 0.0006 31.5 1.7 29 185-217 8-36 (267)
181 KOG0825 PHD Zn-finger protein 32.4 23 0.0005 37.3 1.3 47 157-208 96-151 (1134)
182 PF01608 I_LWEQ: I/LWEQ domain 32.3 2.2E+02 0.0049 23.9 7.0 79 7-86 66-146 (152)
183 PF14311 DUF4379: Domain of un 32.2 31 0.00066 23.5 1.6 22 178-203 33-54 (55)
184 PF10426 zf-RAG1: Recombinatio 32.0 9.2 0.0002 23.5 -1.0 13 199-211 3-15 (30)
185 TIGR02302 aProt_lowcomp conser 31.8 2.8E+02 0.0062 29.7 9.2 46 12-59 459-504 (851)
186 KOG0309 Conserved WD40 repeat- 31.7 40 0.00086 35.5 2.8 48 155-208 1026-1073(1081)
187 KOG3579 Predicted E3 ubiquitin 31.5 27 0.00058 32.6 1.5 35 157-195 268-306 (352)
188 KOG1428 Inhibitor of type V ad 31.5 29 0.00062 39.4 1.9 50 159-211 3488-3544(3738)
189 COG4640 Predicted membrane pro 31.2 25 0.00055 34.1 1.3 26 159-186 3-28 (465)
190 PF11043 DUF2856: Protein of u 31.0 49 0.0011 25.1 2.5 29 4-32 14-42 (97)
191 PF09889 DUF2116: Uncharacteri 30.1 65 0.0014 22.8 2.9 26 199-226 4-29 (59)
192 KOG2682 NAD-dependent histone 30.0 49 0.0011 30.2 2.9 34 178-214 158-191 (314)
193 KOG1829 Uncharacterized conser 29.9 22 0.00048 36.0 0.8 41 157-207 511-557 (580)
194 PTZ00303 phosphatidylinositol 29.8 29 0.00062 36.7 1.5 35 158-192 461-500 (1374)
195 PRK00418 DNA gyrase inhibitor; 29.3 38 0.00081 24.3 1.6 37 156-194 5-43 (62)
196 PF05502 Dynactin_p62: Dynacti 28.9 30 0.00065 34.3 1.5 10 155-164 24-33 (483)
197 TIGR03147 cyt_nit_nrfF cytochr 28.5 67 0.0015 26.2 3.2 32 197-230 39-71 (126)
198 PF10497 zf-4CXXC_R1: Zinc-fin 28.2 71 0.0015 25.0 3.2 30 177-208 31-69 (105)
199 KOG1952 Transcription factor N 27.7 54 0.0012 34.8 3.0 50 156-208 190-244 (950)
200 PF04799 Fzo_mitofusin: fzo-li 27.5 3.2E+02 0.0069 23.5 7.3 33 11-43 83-116 (171)
201 cd01413 SIR2_Af2 SIR2_Af2: Arc 27.2 57 0.0012 28.6 2.8 14 198-213 136-149 (222)
202 PLN02400 cellulose synthase 27.0 33 0.00072 37.3 1.5 49 159-211 38-89 (1085)
203 PRK11032 hypothetical protein; 27.0 2.3E+02 0.0051 24.0 6.3 9 157-165 124-132 (160)
204 PF10915 DUF2709: Protein of u 26.9 68 0.0015 28.3 3.1 29 156-193 86-114 (238)
205 PRK10144 formate-dependent nit 26.5 67 0.0015 26.2 2.8 32 197-230 39-71 (126)
206 cd00730 rubredoxin Rubredoxin; 26.1 20 0.00043 24.5 -0.2 10 197-208 33-42 (50)
207 PRK10869 recombination and rep 25.8 3.6E+02 0.0078 27.1 8.5 10 81-90 308-317 (553)
208 smart00154 ZnF_AN1 AN1-like Zi 25.6 50 0.0011 21.2 1.6 25 160-186 1-25 (39)
209 PF12325 TMF_TATA_bd: TATA ele 25.5 3.6E+02 0.0077 21.7 10.1 34 6-39 11-44 (120)
210 TIGR00373 conserved hypothetic 25.4 53 0.0011 27.5 2.1 14 198-213 128-141 (158)
211 PLN02638 cellulose synthase A 25.0 48 0.001 36.1 2.2 49 159-211 19-70 (1079)
212 PF08785 Ku_PK_bind: Ku C term 25.0 3E+02 0.0065 21.7 6.4 57 34-90 20-79 (120)
213 smart00734 ZnF_Rad18 Rad18-lik 24.8 23 0.0005 20.7 -0.1 10 199-210 2-11 (26)
214 PHA00733 hypothetical protein 24.6 1E+02 0.0023 24.8 3.7 23 188-212 89-111 (128)
215 COG5236 Uncharacterized conser 24.3 49 0.0011 31.7 1.9 45 157-208 61-105 (493)
216 PF07361 Cytochrom_B562: Cytoc 24.0 3.4E+02 0.0074 20.9 8.8 65 13-79 7-77 (103)
217 PTZ00410 NAD-dependent SIR2; P 23.9 82 0.0018 30.0 3.3 14 198-213 171-184 (349)
218 TIGR02098 MJ0042_CXXC MJ0042 f 23.7 49 0.0011 20.5 1.3 8 158-165 3-10 (38)
219 PF06008 Laminin_I: Laminin Do 23.1 5.4E+02 0.012 22.9 10.3 44 7-50 69-112 (264)
220 KOG1729 FYVE finger containing 23.1 24 0.00053 32.7 -0.4 53 157-211 168-225 (288)
221 PF04799 Fzo_mitofusin: fzo-li 22.2 5.1E+02 0.011 22.3 7.8 34 55-88 134-167 (171)
222 KOG3758 Uncharacterized conser 21.9 5.2E+02 0.011 26.8 8.5 35 55-89 68-102 (655)
223 PF00096 zf-C2H2: Zinc finger, 21.8 29 0.00064 18.8 -0.1 8 158-165 1-8 (23)
224 KOG4185 Predicted E3 ubiquitin 21.8 30 0.00065 31.4 -0.1 26 179-208 239-264 (296)
225 KOG3842 Adaptor protein Pellin 21.6 69 0.0015 30.4 2.3 32 177-211 376-414 (429)
226 PF14471 DUF4428: Domain of un 21.6 83 0.0018 21.4 2.2 30 159-191 1-30 (51)
227 PF04423 Rad50_zn_hook: Rad50 21.6 41 0.00088 22.8 0.6 12 200-213 22-33 (54)
228 PLN02195 cellulose synthase A 21.5 74 0.0016 34.4 2.7 52 159-214 8-62 (977)
229 COG5627 MMS21 DNA repair prote 21.4 42 0.00091 30.4 0.8 35 169-211 238-272 (275)
230 PRK05333 NAD-dependent deacety 21.3 2.2E+02 0.0048 25.9 5.5 14 198-213 179-192 (285)
231 COG1326 Uncharacterized archae 21.3 38 0.00082 29.7 0.5 10 155-164 4-13 (201)
232 PRK15202 type III secretion ch 21.3 98 0.0021 24.7 2.7 31 135-166 13-50 (117)
233 COG4338 Uncharacterized protei 21.1 33 0.00071 23.5 0.1 12 156-167 11-22 (54)
234 cd01409 SIRT4 SIRT4: Eukaryoti 21.1 1.1E+02 0.0023 27.7 3.4 14 198-213 169-182 (260)
235 COG5189 SFP1 Putative transcri 21.0 43 0.00093 31.8 0.8 15 197-211 348-362 (423)
236 KOG1842 FYVE finger-containing 20.9 28 0.0006 34.3 -0.4 33 158-190 181-213 (505)
237 KOG4514 Uncharacterized conser 20.9 4.9E+02 0.011 22.9 7.1 38 7-44 139-176 (222)
238 PF04710 Pellino: Pellino; In 20.8 33 0.00071 33.3 0.0 34 170-208 300-336 (416)
239 PF04216 FdhE: Protein involve 20.7 11 0.00025 34.3 -3.0 7 158-164 173-179 (290)
240 COG1645 Uncharacterized Zn-fin 20.6 24 0.00051 29.1 -0.9 13 154-166 25-37 (131)
241 PRK01022 hypothetical protein; 20.5 5.3E+02 0.012 21.9 10.1 27 132-165 121-147 (167)
242 COG1592 Rubrerythrin [Energy p 20.4 71 0.0015 27.3 2.0 10 157-166 134-143 (166)
243 PF08785 Ku_PK_bind: Ku C term 20.3 2E+02 0.0044 22.7 4.5 51 54-105 21-77 (120)
244 PF09162 Tap-RNA_bind: Tap, RN 20.2 69 0.0015 24.5 1.7 19 177-195 12-30 (88)
245 COG2331 Uncharacterized protei 20.1 31 0.00067 25.9 -0.3 30 175-210 14-43 (82)
No 1
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.79 E-value=2.9e-20 Score=131.22 Aligned_cols=57 Identities=40% Similarity=0.929 Sum_probs=38.3
Q ss_pred cceeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 144 EDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 144 dDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
|||+|++ ++++++||||++ .|++||+|+.|||+|+|++|++||+.+ +.+.||++||+
T Consensus 1 ddi~i~~---~~~~~~CPiT~~---~~~~PV~s~~C~H~fek~aI~~~i~~~-~~~~CPv~GC~ 57 (57)
T PF11789_consen 1 DDIVIEG---GTISLKCPITLQ---PFEDPVKSKKCGHTFEKEAILQYIQRN-GSKRCPVAGCN 57 (57)
T ss_dssp S-----S---SB--SB-TTTSS---B-SSEEEESSS--EEEHHHHHHHCTTT-S-EE-SCCC-S
T ss_pred CceEEec---cEeccCCCCcCC---hhhCCcCcCCCCCeecHHHHHHHHHhc-CCCCCCCCCCC
Confidence 6899985 578999999997 569999999999999999999999654 67899999995
No 2
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=99.75 E-value=5.2e-18 Score=150.56 Aligned_cols=88 Identities=30% Similarity=0.546 Sum_probs=74.5
Q ss_pred CccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC--CCCCCCCccCHHHHHHHHHHHH
Q 025425 153 SNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR--KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 153 ~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~--~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
+++++++||||.+|| ++||+|++|||+|+|++|+.++... ..+.||+.||.+ .+....|.+|..|+++|++..+
T Consensus 172 ~e~fs~rdPis~~~I---~nPviSkkC~HvydrDsI~~~l~~~-~~i~CPv~gC~~~~~~~~~~l~~d~el~~kIr~~qe 247 (262)
T KOG2979|consen 172 QEVFSNRDPISKKPI---VNPVISKKCGHVYDRDSIMQILCDE-ITIRCPVLGCENPYYIQPGHLDEDKELQQKIRQSQE 247 (262)
T ss_pred hhhhcccCchhhhhh---hchhhhcCcCcchhhhhHHHHhccC-ceeecccccCCccccccccccCchHHHHHHHHHhcc
Confidence 368999999999865 9999999999999999999999875 678999999994 6778899999999999998876
Q ss_pred cCccccchhhhhhccccccccC
Q 025425 231 TSKETARTDMIEDFTAVDEEHS 252 (253)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~d~~ 252 (253)
..+.|.+-.++||.
T Consensus 248 --------~~~~~~~~s~~~~~ 261 (262)
T KOG2979|consen 248 --------PAIPDETSSEEDDE 261 (262)
T ss_pred --------ccccccccchhhcc
Confidence 45555555555554
No 3
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.51 E-value=9.7e-15 Score=107.71 Aligned_cols=69 Identities=25% Similarity=0.495 Sum_probs=57.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 233 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~ 233 (253)
.|.||||+. +|++||. ..|||+|||.+|.+|++.+ ...||. |+..++.++|.+|..|+..|++|+..++
T Consensus 4 ~f~CpIt~~---lM~dPVi-~~~G~tyer~~I~~~l~~~--~~~~P~--t~~~l~~~~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 4 EFLCPITGE---LMRDPVI-LPSGHTYERSAIERWLEQN--GGTDPF--TRQPLSESDLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp GGB-TTTSS---B-SSEEE-ETTSEEEEHHHHHHHHCTT--SSB-TT--T-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred ccCCcCcCc---HhhCcee-CCcCCEEcHHHHHHHHHcC--CCCCCC--CCCcCCcccceECHHHHHHHHHHHHHcc
Confidence 689999995 8999999 7899999999999999984 478999 8889999999999999999999998554
No 4
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.49 E-value=4e-14 Score=100.31 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=56.1
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEM 228 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~ 228 (253)
+.||||++ .|++||. ..|||+||+.||.+|++.+ ..||+ |+..++.++|.++..|++.|++|
T Consensus 2 ~~Cpi~~~---~~~~Pv~-~~~G~v~~~~~i~~~~~~~---~~cP~--~~~~~~~~~l~~~~~l~~~i~~~ 63 (63)
T smart00504 2 FLCPISLE---VMKDPVI-LPSGQTYERRAIEKWLLSH---GTDPV--TGQPLTHEDLIPNLALKSAIQEW 63 (63)
T ss_pred cCCcCCCC---cCCCCEE-CCCCCEEeHHHHHHHHHHC---CCCCC--CcCCCChhhceeCHHHHHHHHhC
Confidence 68999996 6799999 7999999999999999874 57999 88999999999999999999864
No 5
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=99.45 E-value=1.8e-13 Score=120.17 Aligned_cols=104 Identities=25% Similarity=0.468 Sum_probs=82.6
Q ss_pred ccc-cchHHHHhhcc---CCCC-----CCCCC-CcceeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 120 PLH-KFREAVWNVHH---AGEL-----MPGEE-QEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 120 ~~~-~F~~~i~~~~~---~g~~-----~p~d~-ddDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
-.| .|+++||.... +..+ .|.+. -|+|.|.+ +.++.+||||++|+ ..|+.|++|+|.|+++.|.
T Consensus 145 ~~vl~~~~yIw~~~~~~~~d~~~mks~npee~~~d~i~I~~---~~~~nrCpitl~p~---~~pils~kcnh~~e~D~I~ 218 (275)
T COG5627 145 CGVLSMDEYIWRAEALKAADNIVMKSPNPEEGLVDKILIHQ---ELLSNRCPITLNPD---FYPILSSKCNHKPEMDLIN 218 (275)
T ss_pred eeeEEeehhhhcCccccccccccccCCChhhhhhhhhhhhh---hhhcccCCcccCcc---hhHHHHhhhcccccHHHHH
Confidence 356 99999998543 2222 22222 27888885 67899999999875 8999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHH--HHHHHH
Q 025425 190 AYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVD--IDEMRR 230 (253)
Q Consensus 190 ~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~--I~~~~~ 230 (253)
.+++.- ....||+.||++.+..+.++.|+.|.++ |.-+|+
T Consensus 219 ~~lq~~-~trvcp~~~Csq~~~~~~~v~d~IlE~R~~~~~ir~ 260 (275)
T COG5627 219 KKLQVE-CTRVCPRLICSQKEVVDPYVCDHILEKREAMKYIRN 260 (275)
T ss_pred HHhcCC-ceeecchhhcchheeccchhhhHHHHHHHHHHHHHh
Confidence 999865 4568999999999999999999999766 444444
No 6
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.10 E-value=4.6e-11 Score=79.19 Aligned_cols=40 Identities=23% Similarity=0.620 Sum_probs=31.0
Q ss_pred ccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCC-CCCCC
Q 025425 160 CPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNAN-ARCPV 203 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~-~~CPv 203 (253)
||||+. +|++||+ ..|||+||+.||..+++...+. +.||+
T Consensus 1 CpiC~~---~~~~Pv~-l~CGH~FC~~Cl~~~~~~~~~~~~~CP~ 41 (42)
T PF15227_consen 1 CPICLD---LFKDPVS-LPCGHSFCRSCLERLWKEPSGSGFSCPE 41 (42)
T ss_dssp ETTTTS---B-SSEEE--SSSSEEEHHHHHHHHCCSSSST---SS
T ss_pred CCccch---hhCCccc-cCCcCHHHHHHHHHHHHccCCcCCCCcC
Confidence 899995 8899999 8999999999999999876333 78998
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=9.7e-11 Score=101.13 Aligned_cols=56 Identities=20% Similarity=0.510 Sum_probs=47.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC-------------CCCCCCCCCCCCCCCCCCCCccC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK-------------NANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~-------------~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
.+.||||+. .+++||. +.|||+||+.||..|+... .....||+ |+..++..+|.+-
T Consensus 18 ~~~CpICld---~~~dPVv-T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPv--CR~~Is~~~LvPi 86 (193)
T PLN03208 18 DFDCNICLD---QVRDPVV-TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPV--CKSDVSEATLVPI 86 (193)
T ss_pred ccCCccCCC---cCCCcEE-cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCC--CCCcCChhcEEEe
Confidence 799999996 5699999 8999999999999998531 13468999 9999998888764
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=1.3e-10 Score=98.63 Aligned_cols=53 Identities=23% Similarity=0.629 Sum_probs=43.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV 216 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~ 216 (253)
-|+||||+..+ .=+-||. ++|||+||+.||...++.. ..||+ |++.|+.++|.
T Consensus 131 ~~~CPiCl~~~-sek~~vs-TkCGHvFC~~Cik~alk~~---~~CP~--C~kkIt~k~~~ 183 (187)
T KOG0320|consen 131 TYKCPICLDSV-SEKVPVS-TKCGHVFCSQCIKDALKNT---NKCPT--CRKKITHKQFH 183 (187)
T ss_pred ccCCCceecch-hhccccc-cccchhHHHHHHHHHHHhC---CCCCC--cccccchhhhe
Confidence 49999999875 4455665 9999999999999999864 78999 88888776654
No 9
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.96 E-value=6.4e-10 Score=105.77 Aligned_cols=69 Identities=19% Similarity=0.437 Sum_probs=61.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCcc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKE 234 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~~ 234 (253)
.+.||||+. +|.+||. +.|||+||..||..|+... ..||+ |+..+....|..+..|...|+.|+..++.
T Consensus 26 ~l~C~IC~d---~~~~Pvi-tpCgH~FCs~CI~~~l~~~---~~CP~--Cr~~~~~~~Lr~N~~L~~iVe~~~~~R~~ 94 (397)
T TIGR00599 26 SLRCHICKD---FFDVPVL-TSCSHTFCSLCIRRCLSNQ---PKCPL--CRAEDQESKLRSNWLVSEIVESFKNLRPS 94 (397)
T ss_pred ccCCCcCch---hhhCccC-CCCCCchhHHHHHHHHhCC---CCCCC--CCCccccccCccchHHHHHHHHHHHhhHH
Confidence 689999995 6799998 8999999999999999864 48999 99999988999999999999988765443
No 10
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.6e-09 Score=70.29 Aligned_cols=38 Identities=37% Similarity=0.878 Sum_probs=32.3
Q ss_pred ccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 160 CPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
||||.+ .+.+|+..+.|||+||++||.+|++.+ ..||+
T Consensus 1 C~iC~~---~~~~~~~~~~CGH~fC~~C~~~~~~~~---~~CP~ 38 (39)
T PF13923_consen 1 CPICLD---ELRDPVVVTPCGHSFCKECIEKYLEKN---PKCPV 38 (39)
T ss_dssp ETTTTS---B-SSEEEECTTSEEEEHHHHHHHHHCT---SB-TT
T ss_pred CCCCCC---cccCcCEECCCCCchhHHHHHHHHHCc---CCCcC
Confidence 899995 789997669999999999999999974 68998
No 11
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.74 E-value=1.5e-08 Score=93.23 Aligned_cols=68 Identities=19% Similarity=0.445 Sum_probs=55.0
Q ss_pred eeeccCCCCCCccccCC----ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC----CccCHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEP----VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK----VVCDSLLLVDIDEM 228 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P----v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~----L~~D~~l~~~I~~~ 228 (253)
...||+|+. ....+| +.+ .|||.||++||..+|..+ ...||+ |+..+...+ +.+|..+.+.|.-.
T Consensus 3 ~~~CP~Ck~--~~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~--~~~CP~--C~~~lrk~~fr~q~F~D~~vekEV~iR 75 (309)
T TIGR00570 3 DQGCPRCKT--TKYRNPSLKLMVN-VCGHTLCESCVDLLFVRG--SGSCPE--CDTPLRKNNFRVQLFEDPTVEKEVDIR 75 (309)
T ss_pred CCCCCcCCC--CCccCcccccccC-CCCCcccHHHHHHHhcCC--CCCCCC--CCCccchhhccccccccHHHHHHHHHH
Confidence 357999997 456677 344 799999999999998764 568998 999999888 78899988888776
Q ss_pred HHc
Q 025425 229 RRT 231 (253)
Q Consensus 229 ~~~ 231 (253)
|+.
T Consensus 76 krv 78 (309)
T TIGR00570 76 KRV 78 (309)
T ss_pred HHH
Confidence 663
No 12
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.72 E-value=1.1e-08 Score=93.18 Aligned_cols=70 Identities=19% Similarity=0.464 Sum_probs=61.6
Q ss_pred ccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC-CCCCCCCccCHHHHHHHHHHHH
Q 025425 154 NILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 154 ~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~-~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
-.++|+||+|+. ++++|++...|||.||.+||...|-.+ .+.||. |.. .+-++.|.+|...+++|+.+..
T Consensus 271 ~~i~LkCplc~~---Llrnp~kT~cC~~~fc~eci~~al~ds--Df~Cpn--C~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 271 PNISLKCPLCHC---LLRNPMKTPCCGHTFCDECIGTALLDS--DFKCPN--CSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred CCccccCcchhh---hhhCcccCccccchHHHHHHhhhhhhc--cccCCC--cccccchhhccCccHHHHHHHHHHHH
Confidence 456799999995 889999966899999999999988765 689999 986 7889999999999999988765
No 13
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=1.1e-08 Score=98.86 Aligned_cols=57 Identities=25% Similarity=0.623 Sum_probs=48.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCCCCccCH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVSKVVCDS 219 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~~L~~D~ 219 (253)
.+.||||+.+ ..-|++ +.|||+||-.||.+||..+ .+...||+ |+..|++++|.+=.
T Consensus 186 ~~~CPICL~~---~~~p~~-t~CGHiFC~~CiLqy~~~s~~~~~~~CPi--C~s~I~~kdl~pv~ 244 (513)
T KOG2164|consen 186 DMQCPICLEP---PSVPVR-TNCGHIFCGPCILQYWNYSAIKGPCSCPI--CRSTITLKDLLPVF 244 (513)
T ss_pred CCcCCcccCC---CCcccc-cccCceeeHHHHHHHHhhhcccCCccCCc--hhhhccccceeeee
Confidence 7899999975 477888 6799999999999999764 24567999 99999999887654
No 14
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.65 E-value=7e-09 Score=74.47 Aligned_cols=59 Identities=27% Similarity=0.479 Sum_probs=32.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDI 225 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I 225 (253)
.++|++|. ++|++||.-..|.|+||+.||.+.+. ..||+ |..+-...|++.|+.|...|
T Consensus 7 lLrCs~C~---~~l~~pv~l~~CeH~fCs~Ci~~~~~-----~~CPv--C~~Paw~qD~~~NrqLd~~i 65 (65)
T PF14835_consen 7 LLRCSICF---DILKEPVCLGGCEHIFCSSCIRDCIG-----SECPV--CHTPAWIQDIQINRQLDSMI 65 (65)
T ss_dssp TTS-SSS----S--SS-B---SSS--B-TTTGGGGTT-----TB-SS--S--B-S-SS----HHHHHHH
T ss_pred hcCCcHHH---HHhcCCceeccCccHHHHHHhHHhcC-----CCCCC--cCChHHHHHHHhhhhhhccC
Confidence 58999999 58999997689999999999977554 25999 99999999999998876654
No 15
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.63 E-value=2.6e-08 Score=64.80 Aligned_cols=40 Identities=20% Similarity=0.758 Sum_probs=35.3
Q ss_pred ccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 160 CPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
||||.. .+.+|+....|||+||+.||.+|++.+ +...||.
T Consensus 1 C~iC~~---~~~~~~~~~~C~H~fC~~C~~~~~~~~-~~~~CP~ 40 (41)
T PF00097_consen 1 CPICLE---PFEDPVILLPCGHSFCRDCLRKWLENS-GSVKCPL 40 (41)
T ss_dssp ETTTSS---BCSSEEEETTTSEEEEHHHHHHHHHHT-SSSBTTT
T ss_pred CCcCCc---cccCCCEEecCCCcchHHHHHHHHHhc-CCccCCc
Confidence 899996 679999558999999999999999964 5788998
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.57 E-value=3e-08 Score=66.08 Aligned_cols=38 Identities=26% Similarity=0.768 Sum_probs=23.7
Q ss_pred ccCCCCCCccccC----CccccCCCCcccHHHHHHHHHhC-CCCCCCC
Q 025425 160 CPLSGKPITELAE----PVRSVECKHIYEKNAIQAYIKSK-NANARCP 202 (253)
Q Consensus 160 CPIt~~~~~~l~~----Pv~s~~CgH~f~k~~I~~~l~~~-~~~~~CP 202 (253)
||||.+ |.+ |+. ..|||+||++||..+++.+ +..++||
T Consensus 1 CpIc~e----~~~~~n~P~~-L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE----FSTEENPPMV-LPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT--------TTSS-EEE--SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc----ccCCCCCCEE-EeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999995 577 888 7899999999999999865 2578898
No 17
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.52 E-value=3.3e-08 Score=91.47 Aligned_cols=64 Identities=17% Similarity=0.397 Sum_probs=58.3
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~ 229 (253)
.++|-||.. +|.-||. ++|||+||.-||..||... ..||. |...++..+|+.+..|...|+.+.
T Consensus 23 lLRC~IC~e---yf~ip~i-tpCsHtfCSlCIR~~L~~~---p~CP~--C~~~~~Es~Lr~n~il~Eiv~S~~ 86 (442)
T KOG0287|consen 23 LLRCGICFE---YFNIPMI-TPCSHTFCSLCIRKFLSYK---PQCPT--CCVTVTESDLRNNRILDEIVKSLN 86 (442)
T ss_pred HHHHhHHHH---HhcCcee-ccccchHHHHHHHHHhccC---CCCCc--eecccchhhhhhhhHHHHHHHHHH
Confidence 589999995 8999999 8899999999999999875 68999 999999999999999988888764
No 18
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=9.2e-08 Score=84.39 Aligned_cols=55 Identities=20% Similarity=0.525 Sum_probs=48.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
.|-|-||+. .-++||. +.|||-||=-||.+|+........||| |...++.+.|+|
T Consensus 47 ~FdCNICLd---~akdPVv-TlCGHLFCWpClyqWl~~~~~~~~cPV--CK~~Vs~~~vvP 101 (230)
T KOG0823|consen 47 FFDCNICLD---LAKDPVV-TLCGHLFCWPCLYQWLQTRPNSKECPV--CKAEVSIDTVVP 101 (230)
T ss_pred ceeeeeecc---ccCCCEE-eecccceehHHHHHHHhhcCCCeeCCc--cccccccceEEe
Confidence 799999996 6799999 899999999999999987656678999 999888777765
No 19
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.44 E-value=9.5e-08 Score=63.32 Aligned_cols=43 Identities=28% Similarity=0.824 Sum_probs=33.4
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
.||||+..|.. .+.+....|||+|+.+||..|++.+ ..||+ |+
T Consensus 2 ~C~IC~~~~~~-~~~~~~l~C~H~fh~~Ci~~~~~~~---~~CP~--CR 44 (44)
T PF13639_consen 2 ECPICLEEFED-GEKVVKLPCGHVFHRSCIKEWLKRN---NSCPV--CR 44 (44)
T ss_dssp CETTTTCBHHT-TSCEEEETTSEEEEHHHHHHHHHHS---SB-TT--TH
T ss_pred CCcCCChhhcC-CCeEEEccCCCeeCHHHHHHHHHhC---CcCCc--cC
Confidence 49999986422 4455557899999999999999986 48999 85
No 20
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=5.7e-07 Score=90.48 Aligned_cols=53 Identities=19% Similarity=0.542 Sum_probs=47.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
-++||.|. ...++-|. ++|||.||..||...+... ..+||. |+..|.+.|+.+
T Consensus 643 ~LkCs~Cn---~R~Kd~vI-~kC~H~FC~~Cvq~r~etR--qRKCP~--Cn~aFganDv~~ 695 (698)
T KOG0978|consen 643 LLKCSVCN---TRWKDAVI-TKCGHVFCEECVQTRYETR--QRKCPK--CNAAFGANDVHR 695 (698)
T ss_pred ceeCCCcc---CchhhHHH-HhcchHHHHHHHHHHHHHh--cCCCCC--CCCCCCcccccc
Confidence 58999999 46789888 8999999999999999875 678999 999999998764
No 21
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=3.5e-07 Score=79.67 Aligned_cols=66 Identities=21% Similarity=0.465 Sum_probs=55.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 233 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~ 233 (253)
.+.||||+. .|.+|+. ..|||+||+.||..++. ....||. |+. ... .+.++..+...+..++....
T Consensus 13 ~~~C~iC~~---~~~~p~~-l~C~H~~c~~C~~~~~~---~~~~Cp~--cr~-~~~-~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 13 ELTCPICLE---YFREPVL-LPCGHNFCRACLTRSWE---GPLSCPV--CRP-PSR-NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred cccChhhHH---HhhcCcc-ccccchHhHHHHHHhcC---CCcCCcc--cCC-chh-ccCccHHHHHHHHHHHhcCC
Confidence 688999995 7899954 88999999999999998 3589999 996 333 88899999999999887443
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.35 E-value=5.2e-07 Score=58.12 Aligned_cols=45 Identities=31% Similarity=0.822 Sum_probs=37.2
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
.||||.. .+.+|+....|||.|+..|+..|++.+ ...||+ |+..+
T Consensus 1 ~C~iC~~---~~~~~~~~~~C~H~~c~~C~~~~~~~~--~~~Cp~--C~~~~ 45 (45)
T cd00162 1 ECPICLE---EFREPVVLLPCGHVFCRSCIDKWLKSG--KNTCPL--CRTPI 45 (45)
T ss_pred CCCcCch---hhhCceEecCCCChhcHHHHHHHHHhC--cCCCCC--CCCcC
Confidence 4999996 458888866799999999999999873 578999 98643
No 23
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.33 E-value=2.9e-07 Score=83.79 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=55.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
.++|-||.. .|.-|+. +.|||+||.-||..||+.. ..||+ |+...+..-|..+..++..++.+.+
T Consensus 25 ~lrC~IC~~---~i~ip~~-TtCgHtFCslCIR~hL~~q---p~CP~--Cr~~~~esrlr~~s~~~ei~es~~~ 89 (391)
T COG5432 25 MLRCRICDC---RISIPCE-TTCGHTFCSLCIRRHLGTQ---PFCPV--CREDPCESRLRGSSGSREINESHAR 89 (391)
T ss_pred HHHhhhhhh---eeeccee-cccccchhHHHHHHHhcCC---CCCcc--ccccHHhhhcccchhHHHHHHhhhh
Confidence 578999995 7899999 8999999999999999875 68999 9998888888888777666665543
No 24
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=3e-07 Score=83.50 Aligned_cols=51 Identities=33% Similarity=0.649 Sum_probs=44.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV 216 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~ 216 (253)
+.+|-||+. ...+|-- ++|||.||-+||++|.... ..||+ |+..++++++.
T Consensus 239 ~~kC~LCLe---~~~~pSa-TpCGHiFCWsCI~~w~~ek---~eCPl--CR~~~~pskvi 289 (293)
T KOG0317|consen 239 TRKCSLCLE---NRSNPSA-TPCGHIFCWSCILEWCSEK---AECPL--CREKFQPSKVI 289 (293)
T ss_pred CCceEEEec---CCCCCCc-CcCcchHHHHHHHHHHccc---cCCCc--ccccCCCccee
Confidence 589999996 5689976 9999999999999999875 56999 99999988764
No 25
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=98.26 E-value=7.2e-07 Score=61.27 Aligned_cols=47 Identities=28% Similarity=0.745 Sum_probs=31.7
Q ss_pred ceeeccCCCCCCccccCCccccCCCCc--ccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~--f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
++++||||.. .|.-|+++..|.|. |+-.....+.... +.+.||+ |++
T Consensus 1 vsL~CPls~~---~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~-~~W~CPi--C~~ 49 (50)
T PF02891_consen 1 VSLRCPLSFQ---RIRIPVRGKNCKHLQCFDLESFLESNQRT-PKWKCPI--CNK 49 (50)
T ss_dssp EESB-TTTSS---B-SSEEEETT--SS--EEHHHHHHHHHHS----B-TT--T--
T ss_pred CeeeCCCCCC---EEEeCccCCcCcccceECHHHHHHHhhcc-CCeECcC--CcC
Confidence 4799999996 67999999999999 8887777777765 5699999 975
No 26
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.20 E-value=1e-06 Score=78.82 Aligned_cols=48 Identities=21% Similarity=0.566 Sum_probs=36.3
Q ss_pred eeeccCCCCCCccccCCc------cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPV------RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv------~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+.++ ...|+ ..+.|||+||+.||..|++.+ ..||+ |+..+.
T Consensus 174 ~~eC~ICle~~--~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~---~tCPl--CR~~~~ 227 (238)
T PHA02929 174 DKECAICMEKV--YDKEIKNMYFGILSNCNHVFCIECIDIWKKEK---NTCPV--CRTPFI 227 (238)
T ss_pred CCCCccCCccc--ccCccccccceecCCCCCcccHHHHHHHHhcC---CCCCC--CCCEee
Confidence 46799999742 33332 225899999999999999864 58999 998653
No 27
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.17 E-value=1.4e-06 Score=59.33 Aligned_cols=46 Identities=20% Similarity=0.655 Sum_probs=37.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
+..|+||+. ...+++. .+|||. ||..|+..+++. ...||+ |++.|+
T Consensus 2 ~~~C~iC~~---~~~~~~~-~pCgH~~~C~~C~~~~~~~---~~~CP~--Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFE---NPRDVVL-LPCGHLCFCEECAERLLKR---KKKCPI--CRQPIE 48 (50)
T ss_dssp HSB-TTTSS---SBSSEEE-ETTCEEEEEHHHHHHHHHT---TSBBTT--TTBB-S
T ss_pred cCCCccCCc---cCCceEE-eCCCChHHHHHHhHHhccc---CCCCCc--CChhhc
Confidence 467999996 4678877 799999 999999999994 478999 998774
No 28
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.13 E-value=2.2e-06 Score=56.97 Aligned_cols=44 Identities=18% Similarity=0.544 Sum_probs=33.2
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
.||+|.+++. -..|...+.|||+||..||.... . ....||+ |++
T Consensus 1 ~C~~C~~~~~-~~~~~~l~~CgH~~C~~C~~~~~--~-~~~~CP~--C~k 44 (44)
T PF14634_consen 1 HCNICFEKYS-EERRPRLTSCGHIFCEKCLKKLK--G-KSVKCPI--CRK 44 (44)
T ss_pred CCcCcCcccc-CCCCeEEcccCCHHHHHHHHhhc--C-CCCCCcC--CCC
Confidence 4899997541 13344448999999999999988 2 4689999 974
No 29
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.09 E-value=3.6e-06 Score=52.22 Aligned_cols=38 Identities=37% Similarity=0.915 Sum_probs=31.8
Q ss_pred ccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 160 CPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
||||+. ...+|+. ..|||.|+..||..|+.. +...||+
T Consensus 1 C~iC~~---~~~~~~~-~~C~H~~c~~C~~~~~~~--~~~~CP~ 38 (39)
T smart00184 1 CPICLE---ELKDPVV-LPCGHTFCRSCIRKWLKS--GNNTCPI 38 (39)
T ss_pred CCcCcc---CCCCcEE-ecCCChHHHHHHHHHHHh--CcCCCCC
Confidence 899986 4577777 789999999999999983 3568998
No 30
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=6.1e-07 Score=83.51 Aligned_cols=69 Identities=22% Similarity=0.410 Sum_probs=58.9
Q ss_pred ccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC-CCCCCCccCHHHHHHHHHHH
Q 025425 154 NILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRK-LQVSKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 154 ~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~-l~~~~L~~D~~l~~~I~~~~ 229 (253)
....+.||||+ .+|+.-++.+.|+|.||.+||...++.+ ...||. |++. .+...|.+||.+-..|...-
T Consensus 40 ~~~~v~c~icl---~llk~tmttkeClhrfc~~ci~~a~r~g--n~ecpt--cRk~l~SkrsLr~Dp~fdaLis~i~ 109 (381)
T KOG0311|consen 40 FDIQVICPICL---SLLKKTMTTKECLHRFCFDCIWKALRSG--NNECPT--CRKKLVSKRSLRIDPNFDALISKIY 109 (381)
T ss_pred hhhhhccHHHH---HHHHhhcccHHHHHHHHHHHHHHHHHhc--CCCCch--HHhhccccccCCCCccHHHHHHHHh
Confidence 45579999999 4889999978999999999999999875 578999 9985 56889999998877776654
No 31
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.9e-06 Score=76.35 Aligned_cols=53 Identities=25% Similarity=0.423 Sum_probs=43.7
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
.+++|+||.. ....|+. +.|||+||-.||...+... +.-.||. |++...++++
T Consensus 214 ~d~kC~lC~e---~~~~ps~-t~CgHlFC~~Cl~~~~t~~-k~~~Cpl--CRak~~pk~v 266 (271)
T COG5574 214 ADYKCFLCLE---EPEVPSC-TPCGHLFCLSCLLISWTKK-KYEFCPL--CRAKVYPKKV 266 (271)
T ss_pred cccceeeeec---ccCCccc-ccccchhhHHHHHHHHHhh-ccccCch--hhhhccchhh
Confidence 3899999995 6799998 9999999999999976544 3345999 9998877655
No 32
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.98 E-value=3.7e-06 Score=77.70 Aligned_cols=62 Identities=26% Similarity=0.521 Sum_probs=51.5
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC----CCCCccCHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ----VSKVVCDSLLLVDI 225 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~----~~~L~~D~~l~~~I 225 (253)
.-+.|++|. .+|.|+-+.+.|=|+|||+||..||..+ ..||. |...|. ...+..|..|+..|
T Consensus 14 ~~itC~LC~---GYliDATTI~eCLHTFCkSCivk~l~~~---~~CP~--C~i~ih~t~pl~ni~~DrtlqdiV 79 (331)
T KOG2660|consen 14 PHITCRLCG---GYLIDATTITECLHTFCKSCIVKYLEES---KYCPT--CDIVIHKTHPLLNIRSDRTLQDIV 79 (331)
T ss_pred cceehhhcc---ceeecchhHHHHHHHHHHHHHHHHHHHh---ccCCc--cceeccCccccccCCcchHHHHHH
Confidence 367899999 5899999888999999999999999975 78999 876554 45688888875444
No 33
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.79 E-value=1.5e-05 Score=76.23 Aligned_cols=64 Identities=22% Similarity=0.516 Sum_probs=51.8
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc-CHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC-DSLLLVDIDE 227 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~-D~~l~~~I~~ 227 (253)
.++.||+|.. .+.+|+.++.|||.||..||..++..+ ..||+ |...+......+ +..+++.+..
T Consensus 20 ~~l~C~~C~~---vl~~p~~~~~cgh~fC~~C~~~~~~~~---~~cp~--~~~~~~~~~~~~~~~~~~~~~~~ 84 (391)
T KOG0297|consen 20 ENLLCPICMS---VLRDPVQTTTCGHRFCAGCLLESLSNH---QKCPV--CRQELTQAEELPVPRALRRELLK 84 (391)
T ss_pred ccccCccccc---cccCCCCCCCCCCcccccccchhhccC---cCCcc--cccccchhhccCchHHHHHHHHh
Confidence 3799999996 679999977999999999999999873 68999 988888777776 3344555543
No 34
>PHA02926 zinc finger-like protein; Provisional
Probab=97.71 E-value=3e-05 Score=68.52 Aligned_cols=50 Identities=18% Similarity=0.543 Sum_probs=36.7
Q ss_pred eeeccCCCCCCccccC--------CccccCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE--------PVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~--------Pv~s~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~~l~ 211 (253)
+..|+||+.. .+.. ++. ..|+|+||..||..|.+.. +....||+ |+..+.
T Consensus 170 E~eCgICmE~--I~eK~~~~eRrFGIL-~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPi--CR~~f~ 230 (242)
T PHA02926 170 EKECGICYEV--VYSKRLENDRYFGLL-DSCNHIFCITCINIWHRTRRETGASDNCPI--CRTRFR 230 (242)
T ss_pred CCCCccCccc--ccccccccccccccc-CCCCchHHHHHHHHHHHhccccCcCCcCCC--Ccceee
Confidence 5789999973 3332 233 5899999999999999753 23456999 998553
No 35
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.38 E-value=0.00014 Score=65.71 Aligned_cols=56 Identities=20% Similarity=0.505 Sum_probs=41.0
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV 216 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~ 216 (253)
...|.||||+++|+--..=|-...|||+|+..+|.+.- ....||+ |...+...|++
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k----~~~~Cp~--c~~~f~~~DiI 166 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK----KSKKCPV--CGKPFTEEDII 166 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc----ccccccc--cCCccccCCEE
Confidence 34799999997542222223335899999999999982 2457999 99999888764
No 36
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=6e-05 Score=68.91 Aligned_cols=64 Identities=20% Similarity=0.401 Sum_probs=47.1
Q ss_pred ccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHH
Q 025425 154 NILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDE 227 (253)
Q Consensus 154 ~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~ 227 (253)
..+.|.|-||.+ .|.+||. +.|||.||..|-...++.+ ..|++ |++.+. ..+-+...|...+..
T Consensus 238 ~~~Pf~c~icr~---~f~~pVv-t~c~h~fc~~ca~~~~qk~---~~c~v--C~~~t~-g~~~~akeL~~~L~~ 301 (313)
T KOG1813|consen 238 ELLPFKCFICRK---YFYRPVV-TKCGHYFCEVCALKPYQKG---EKCYV--CSQQTH-GSFNVAKELLVSLKL 301 (313)
T ss_pred ccCCcccccccc---ccccchh-hcCCceeehhhhccccccC---Cccee--cccccc-cccchHHHHHHHHHh
Confidence 467899999997 5699999 8999999999988777654 68999 998553 233344444444433
No 37
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.00017 Score=65.46 Aligned_cols=50 Identities=28% Similarity=0.551 Sum_probs=40.5
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
+-+..||+|+++- +.|...-+|||+||.-||..-..-. ..+.||. |+...
T Consensus 237 t~~~~C~~Cg~~P---tiP~~~~~C~HiyCY~Ci~ts~~~~-asf~Cp~--Cg~~~ 286 (298)
T KOG2879|consen 237 TSDTECPVCGEPP---TIPHVIGKCGHIYCYYCIATSRLWD-ASFTCPL--CGENV 286 (298)
T ss_pred cCCceeeccCCCC---CCCeeeccccceeehhhhhhhhcch-hhcccCc--cCCCC
Confidence 3467899999754 8888877899999999999877644 5689999 88644
No 38
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.30 E-value=0.00011 Score=64.00 Aligned_cols=55 Identities=20% Similarity=0.431 Sum_probs=42.5
Q ss_pred ceeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC
Q 025425 145 DIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRK 209 (253)
Q Consensus 145 Di~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~ 209 (253)
-.+|+. .++.+.|.|-||.+ .++.||. +.|||.||..|...-.+. ...|-+ |++.
T Consensus 185 ~~v~~~-~~e~IPF~C~iCKk---dy~spvv-t~CGH~FC~~Cai~~y~k---g~~C~~--Cgk~ 239 (259)
T COG5152 185 APVISG-PGEKIPFLCGICKK---DYESPVV-TECGHSFCSLCAIRKYQK---GDECGV--CGKA 239 (259)
T ss_pred cccccC-CCCCCceeehhchh---hccchhh-hhcchhHHHHHHHHHhcc---CCccee--cchh
Confidence 345553 35788999999997 7799999 899999999986554443 368999 8863
No 39
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=97.20 E-value=0.00043 Score=70.12 Aligned_cols=81 Identities=26% Similarity=0.545 Sum_probs=62.6
Q ss_pred CCCcceeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCCCCccC
Q 025425 141 EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 141 d~ddDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
++|.||+.+. ..++|.|||++ ..|.-|++...|+|.=|.++. .|+..+ ...+.||| |.+.....+|.-|
T Consensus 293 ~~d~~i~tt~---~~vSL~CPl~~---~Rm~~P~r~~~CkHlQcFD~~-~~lq~n~~~pTW~CPV--C~~~~~~e~l~iD 363 (636)
T KOG2169|consen 293 GPDSEIATTS---LRVSLNCPLSK---MRMSLPARGHTCKHLQCFDAL-SYLQMNEQKPTWRCPV--CQKAAPFEGLIID 363 (636)
T ss_pred CCcccceecc---ceeEecCCccc---ceeecCCcccccccceecchh-hhHHhccCCCeeeCcc--CCccccccchhhh
Confidence 4455777664 45799999999 488999999999999777753 344433 36789999 9999999999999
Q ss_pred HHHHHHHHHHHH
Q 025425 219 SLLLVDIDEMRR 230 (253)
Q Consensus 219 ~~l~~~I~~~~~ 230 (253)
..+...+...-.
T Consensus 364 ~~~~~iL~~~~~ 375 (636)
T KOG2169|consen 364 GYFLNILQSCQA 375 (636)
T ss_pred HHHHHHHhhccC
Confidence 887766665443
No 40
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00019 Score=66.51 Aligned_cols=48 Identities=23% Similarity=0.440 Sum_probs=39.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
.-.||+|.+. -.+|-.-..-|.+||-.||..|+... ..|||+||+..+
T Consensus 300 ~~~CpvClk~---r~Nptvl~vSGyVfCY~Ci~~Yv~~~---~~CPVT~~p~~v 347 (357)
T KOG0826|consen 300 REVCPVCLKK---RQNPTVLEVSGYVFCYPCIFSYVVNY---GHCPVTGYPASV 347 (357)
T ss_pred cccChhHHhc---cCCCceEEecceEEeHHHHHHHHHhc---CCCCccCCcchH
Confidence 4679999984 48887656789999999999999965 479999998643
No 41
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.10 E-value=0.00038 Score=51.22 Aligned_cols=44 Identities=25% Similarity=0.723 Sum_probs=31.2
Q ss_pred eccCCCCCCccc---------cCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITEL---------AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 159 ~CPIt~~~~~~l---------~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
.|+||+.+|... .-|+.-..|||.|-..||.+|++.+ ..||+ |+
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~---~~CP~--CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQN---NTCPL--CR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTS---SB-TT--SS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcC---CcCCC--CC
Confidence 499999754111 2333335799999999999999876 48999 86
No 42
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.99 E-value=0.00038 Score=68.22 Aligned_cols=55 Identities=27% Similarity=0.589 Sum_probs=43.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
...|-+|..| -++|+. +.|.|+|||-||.+|+..- +..+.||+ |...|+.+.-.|
T Consensus 536 ~~~C~lc~d~---aed~i~-s~ChH~FCrlCi~eyv~~f~~~~nvtCP~--C~i~LsiDlse~ 592 (791)
T KOG1002|consen 536 EVECGLCHDP---AEDYIE-SSCHHKFCRLCIKEYVESFMENNNVTCPV--CHIGLSIDLSEP 592 (791)
T ss_pred ceeecccCCh---hhhhHh-hhhhHHHHHHHHHHHHHhhhcccCCCCcc--ccccccccccch
Confidence 4679999975 599998 7899999999999998641 13489999 998777664433
No 43
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=96.79 E-value=0.00044 Score=61.88 Aligned_cols=71 Identities=23% Similarity=0.424 Sum_probs=52.8
Q ss_pred ceeeccCCCCCCccccCCc----cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC----CccCHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPV----RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK----VVCDSLLLVDIDE 227 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv----~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~----L~~D~~l~~~I~~ 227 (253)
.+-+||+|.- ..+-+|= .|..|=|.-|.+|+-..+..+ +.+||..||.+.|.... ...|..+.+.+.-
T Consensus 9 ~d~~CPvCks--DrYLnPdik~linPECyHrmCESCvdRIFs~G--pAqCP~~gC~kILRK~kf~~qtFeD~~vEkEvdv 84 (314)
T COG5220 9 EDRRCPVCKS--DRYLNPDIKILINPECYHRMCESCVDRIFSRG--PAQCPYKGCGKILRKIKFIKQTFEDITVEKEVDV 84 (314)
T ss_pred hcccCCcccc--ccccCCCeEEEECHHHHHHHHHHHHHHHhcCC--CCCCCCccHHHHHHHhcccccccchhhhhhhhhH
Confidence 3568999997 5677773 345699999999999999875 88999999998775433 4456666665554
Q ss_pred HHH
Q 025425 228 MRR 230 (253)
Q Consensus 228 ~~~ 230 (253)
.++
T Consensus 85 Rkr 87 (314)
T COG5220 85 RKR 87 (314)
T ss_pred HHH
Confidence 443
No 44
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.66 E-value=0.0023 Score=48.72 Aligned_cols=54 Identities=19% Similarity=0.495 Sum_probs=41.4
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.++-.||.|.-| --.-|+.--.|+|.|---||.+++........||. |++....
T Consensus 30 ~fdg~Cp~Ck~P--gd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPm--CR~~w~~ 83 (85)
T PF12861_consen 30 PFDGCCPDCKFP--GDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPM--CRQPWKF 83 (85)
T ss_pred ccccCCCCccCC--CCCCceeeccCccHHHHHHHHHHHccccCCCCCCC--cCCeeee
Confidence 356679999876 23447655689999999999999987534568999 9987654
No 45
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.0016 Score=61.79 Aligned_cols=53 Identities=25% Similarity=0.524 Sum_probs=40.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-|.|||...- ..=.||=....|||+-+|++|..+.+++..+++||. |+..-..
T Consensus 334 vF~CPVlKeq-tsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPY--CP~e~~~ 386 (394)
T KOG2817|consen 334 VFICPVLKEQ-TSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPY--CPVEQLA 386 (394)
T ss_pred eeecccchhh-ccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCC--CCcccCH
Confidence 4899998763 233455444899999999999999987645699999 9975443
No 46
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.44 E-value=0.002 Score=57.96 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=44.4
Q ss_pred ceeeccCCCCCCccccCCccc---cCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 156 LNISCPLSGKPITELAEPVRS---VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s---~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
..|.||+|.. .|.|-+.. .+|||+|+.+|+..+|+.. ..||+ |...++-+|+++
T Consensus 220 ~ryiCpvtrd---~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D---~v~pv--~d~plkdrdiI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRD---TLTNTTPCAVLRPSGHVVTKECVEKLIRKD---MVDPV--TDKPLKDRDIIG 276 (303)
T ss_pred cceecccchh---hhcCccceEEeccCCcEeeHHHHHHhcccc---ccccC--CCCcCcccceEe
Confidence 4799999995 67777643 4899999999999999864 68999 888888887754
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.0018 Score=59.59 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=39.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.-.||||+ +...-||. ..|+|.||.-||....... ...||+ |+..|.-
T Consensus 7 ~~eC~IC~---nt~n~Pv~-l~C~HkFCyiCiKGsy~nd--k~~Cav--CR~pids 54 (324)
T KOG0824|consen 7 KKECLICY---NTGNCPVN-LYCFHKFCYICIKGSYKND--KKTCAV--CRFPIDS 54 (324)
T ss_pred CCcceeee---ccCCcCcc-ccccchhhhhhhcchhhcC--CCCCce--ecCCCCc
Confidence 45699999 57899977 8999999999999877654 457999 9998753
No 48
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.0048 Score=56.53 Aligned_cols=65 Identities=22% Similarity=0.385 Sum_probs=49.3
Q ss_pred eccCCCCCCccccCCc---cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC----CccCHHHHHHHHHHH
Q 025425 159 SCPLSGKPITELAEPV---RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK----VVCDSLLLVDIDEMR 229 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv---~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~----L~~D~~l~~~I~~~~ 229 (253)
.||+|.- ..+.+|- .+..|||.-|.+|+-..+..+ +..|| ||...+.... +..|+.+...++-.|
T Consensus 2 ~Cp~CKt--~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g--~~~Cp--eC~~iLRk~nfr~q~fED~~vekEv~iRr 73 (300)
T KOG3800|consen 2 ACPKCKT--DRYLNPDLKLMINECGHRLCESCVDRIFSLG--PAQCP--ECMVILRKNNFRVQTFEDPTVEKEVDIRR 73 (300)
T ss_pred CCccccc--ceecCccceeeeccccchHHHHHHHHHHhcC--CCCCC--cccchhhhcccchhhcchhHHHHHHHHHH
Confidence 4999987 6788884 223899999999999988875 67899 5999886554 567887765555443
No 49
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.0022 Score=57.78 Aligned_cols=53 Identities=19% Similarity=0.412 Sum_probs=38.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV 216 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~ 216 (253)
.|.|||++.+++-.-.=+-...|||+|+..++.++- ...|++ |++.+..+|++
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik-----as~C~~--C~a~y~~~dvI 163 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK-----ASVCHV--CGAAYQEDDVI 163 (293)
T ss_pred eeecccccceecceEEEEEEeccceeccHHHHHHhh-----hccccc--cCCcccccCeE
Confidence 699999996542222222335899999999988863 346999 99999888753
No 50
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=96.15 E-value=0.0035 Score=60.30 Aligned_cols=52 Identities=31% Similarity=0.573 Sum_probs=43.6
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
+.|-|+++ +=++||.|.+-||+|+|.-|.+||..+ -.||+ -++.++.++|++
T Consensus 1 m~CaISgE---vP~~PVvS~~Sg~vfEkrLIEqyI~e~---G~DPI--t~~pLs~eelV~ 52 (506)
T KOG0289|consen 1 MVCAISGE---VPEEPVVSPVSGHVFEKRLIEQYIAET---GKDPI--TNEPLSIEELVE 52 (506)
T ss_pred CeecccCC---CCCCccccccccchHHHHHHHHHHHHc---CCCCC--CCCcCCHHHeee
Confidence 46999997 569999999999999999999999987 37999 447777766653
No 51
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0035 Score=57.88 Aligned_cols=50 Identities=16% Similarity=0.546 Sum_probs=39.9
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.-|-||+.-| +=.+-++-++|.|.|-..||..|+-.. +.+||+ |+..+.+
T Consensus 324 veCaICms~f-iK~d~~~vlPC~H~FH~~Cv~kW~~~y--~~~CPv--Crt~iPP 373 (374)
T COG5540 324 VECAICMSNF-IKNDRLRVLPCDHRFHVGCVDKWLLGY--SNKCPV--CRTAIPP 373 (374)
T ss_pred ceEEEEhhhh-cccceEEEeccCceechhHHHHHHhhh--cccCCc--cCCCCCC
Confidence 6799999744 233456668999999999999999864 568999 9987753
No 52
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0031 Score=60.50 Aligned_cols=47 Identities=21% Similarity=0.573 Sum_probs=39.8
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-+|.|-+|.. .|-.||. ++|||+||..||...+.. ...||. |+..+.
T Consensus 83 sef~c~vc~~---~l~~pv~-tpcghs~c~~Cl~r~ld~---~~~cp~--Cr~~l~ 129 (398)
T KOG4159|consen 83 SEFECCVCSR---ALYPPVV-TPCGHSFCLECLDRSLDQ---ETECPL--CRDELV 129 (398)
T ss_pred chhhhhhhHh---hcCCCcc-ccccccccHHHHHHHhcc---CCCCcc--cccccc
Confidence 3799999985 7899999 699999999999996664 468999 998664
No 53
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.99 E-value=0.0041 Score=55.94 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=28.8
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHh
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS 194 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~ 194 (253)
-|.+|++|+ .+||. ++=||.|||+||++||-.
T Consensus 45 cCsLtLqPc---~dPvi-t~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 45 CCSLTLQPC---RDPVI-TPDGYLFDREAILEYILA 76 (303)
T ss_pred eeeeecccc---cCCcc-CCCCeeeeHHHHHHHHHH
Confidence 589999876 99999 789999999999999854
No 54
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.0043 Score=61.72 Aligned_cols=46 Identities=26% Similarity=0.691 Sum_probs=37.4
Q ss_pred eeeccCCCCCCccccC-----CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE-----PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~-----Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.-.|+||.+ .|.. |-+ .+|||+|...|+..|+++. -.||. |+..+.
T Consensus 291 ~~~C~IC~e---~l~~~~~~~~~r-L~C~Hifh~~CL~~W~er~---qtCP~--CR~~~~ 341 (543)
T KOG0802|consen 291 DELCIICLE---ELHSGHNITPKR-LPCGHIFHDSCLRSWFERQ---QTCPT--CRTVLY 341 (543)
T ss_pred CCeeeeech---hhccccccccce-eecccchHHHHHHHHHHHh---CcCCc--chhhhh
Confidence 456999996 5677 555 7999999999999999974 58999 997443
No 55
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.0065 Score=57.28 Aligned_cols=50 Identities=24% Similarity=0.631 Sum_probs=41.2
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
..|-||++-| .--+=++-.+|+|.|=..||-.||.+. ..-||+ |...+..
T Consensus 230 ~~CaIClEdY-~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPv--CK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDY-EKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPV--CKRDIRT 279 (348)
T ss_pred ceEEEeeccc-ccCCeeeEecCCCchhhccchhhHhhc--CccCCC--CCCcCCC
Confidence 5799999865 555677778999999999999999986 456999 9986643
No 56
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.0053 Score=58.65 Aligned_cols=58 Identities=21% Similarity=0.557 Sum_probs=45.1
Q ss_pred eeccCCCCCCccccCCc----cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHH
Q 025425 158 ISCPLSGKPITELAEPV----RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLL 221 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv----~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l 221 (253)
.+||||+. -++-|+ .+..|||-|-.+||..||.+. ....||. |...-+.++|.+-..+
T Consensus 5 ~tcpicld---s~~~~g~hr~vsl~cghlFgs~cie~wl~k~-~~~~cp~--c~~katkr~i~~e~al 66 (463)
T KOG1645|consen 5 TTCPICLD---SYTTAGNHRIVSLQCGHLFGSQCIEKWLGKK-TKMQCPL--CSGKATKRQIRPEYAL 66 (463)
T ss_pred ccCceeee---eeeecCceEEeeecccccccHHHHHHHHhhh-hhhhCcc--cCChhHHHHHHHHHHH
Confidence 56999996 456665 356899999999999999643 5568999 9987777777765544
No 57
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.008 Score=58.73 Aligned_cols=50 Identities=24% Similarity=0.597 Sum_probs=37.1
Q ss_pred eeeccCCCCCCccccC---C-----------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE---P-----------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~---P-----------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
..-||||+.++ .|.. | +.-++|.|+|-+.|+++|+... +..||+ |+..|.
T Consensus 571 t~dC~ICMt~I-~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~y--kl~CPv--CR~pLP 634 (636)
T KOG0828|consen 571 TNDCVICMTPI-DLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTY--KLICPV--CRCPLP 634 (636)
T ss_pred cccceEecccc-ceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhh--cccCCc--cCCCCC
Confidence 45699999876 2221 1 1125899999999999999864 468999 998764
No 58
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.015 Score=52.53 Aligned_cols=67 Identities=15% Similarity=0.181 Sum_probs=58.3
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
+.|-||.. +|++||+ ++-|-+|++..|.++++.- +. -=|+ -+..|+...|.||..|+..|..|+..+
T Consensus 212 lcgkIt~e---l~~~pvi-~psgIty~ra~I~Ehl~rv-gh-fdpv--tr~~Lte~q~ipN~alkevIa~fl~~n 278 (284)
T KOG4642|consen 212 LCGKITLE---LMREPVI-TPSGITYDRADIEEHLQRV-GH-FDPV--TRWPLTEYQLIPNLALKEVIAAFLKEN 278 (284)
T ss_pred hhhhhhHH---hhcCCcc-CccccchhHHHHHHHHHHh-cc-CCch--hcccCCHHhhccchHHHHHHHHHHHhc
Confidence 66789985 8899999 8999999999999999986 33 3489 568899999999999999999999743
No 59
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.011 Score=56.69 Aligned_cols=55 Identities=15% Similarity=0.414 Sum_probs=40.3
Q ss_pred eeeccCCCCCCcccc-CCccccCCCCcccHHHHHHHHHhC-----CCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELA-EPVRSVECKHIYEKNAIQAYIKSK-----NANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~-~Pv~s~~CgH~f~k~~I~~~l~~~-----~~~~~CPv~GC~~~l~~~ 213 (253)
.+.|-||... .+- .=+.-.+|+|+||+.|+..|.... ....+||..||+....+.
T Consensus 184 lf~C~ICf~e--~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g 244 (445)
T KOG1814|consen 184 LFDCCICFEE--QMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPG 244 (445)
T ss_pred cccceeeehh--hcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCch
Confidence 6899999863 222 333446899999999999998531 135789999999866544
No 60
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.88 E-value=0.0045 Score=63.16 Aligned_cols=53 Identities=23% Similarity=0.456 Sum_probs=43.3
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
+.|+||.. ...|+. +.|||.||.+|+..+|... ....||. |+..+...+|...
T Consensus 455 ~~c~ic~~----~~~~~i-t~c~h~~c~~c~~~~i~~~-~~~~~~~--cr~~l~~~~l~s~ 507 (674)
T KOG1001|consen 455 HWCHICCD----LDSFFI-TRCGHDFCVECLKKSIQQS-ENAPCPL--CRNVLKEKKLLSA 507 (674)
T ss_pred cccccccc----ccccee-ecccchHHHHHHHhccccc-cCCCCcH--HHHHHHHHHHhhc
Confidence 79999984 577777 8999999999999999876 3448999 9987766655544
No 61
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.88 E-value=0.023 Score=54.25 Aligned_cols=169 Identities=17% Similarity=0.259 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccc----hHHHHHHHHHHHHHHHHHhHhHHHHHHHHH---HHhhcCCCCChhhHHHHHH
Q 025425 30 VIGEIRRALGMIKEIAVDLEKDNQ----SQMVKELEDATIQLMEAFGDCTHHSAAIQS---VGNTYQPGTELTDFKKLLV 102 (253)
Q Consensus 30 ~~~~~~~~~~~~~~vA~~le~~~~----~~~vk~le~~v~el~~~~~e~~~~~~al~~---l~~~y~~~~~~~~f~~~~~ 102 (253)
++..+..|++..++.-.-....|+ .-.+--+-++++++.++++-..++.+|+-. +.++..+.+.+....+-|+
T Consensus 218 ~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~ 297 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLE 297 (518)
T ss_pred HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 455666667666665444444333 245566788888888888888888888643 3333333222222333332
Q ss_pred HHHhhhhcCCCCCCCCCccccchHHHHhh-ccCCCCC---------------CCCCCcc---eeEe-ccCCccceeeccC
Q 025425 103 DEDAKSRAASSSVPPNDPLHKFREAVWNV-HHAGELM---------------PGEEQED---IVMT-STQSNILNISCPL 162 (253)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~F~~~i~~~-~~~g~~~---------------p~d~ddD---i~i~-~~~~~~~~~~CPI 162 (253)
..-..++ ..+-.-++|-....++ ..-|... -|++||+ ++-. ++. .-..+.|-.
T Consensus 298 ~~r~~~k------~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~~~-~e~~L~Cg~ 370 (518)
T KOG1941|consen 298 TLRLQNK------ICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHECV-EETELYCGL 370 (518)
T ss_pred HHHHhhc------ccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHhhhhhh
Confidence 2111111 0111111222211111 1111100 1233333 1111 110 124689999
Q ss_pred CCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 163 SGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 163 t~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
|++.+.+=-+-..-.+|.|+|--.|+.+|+.++ +...||. |++
T Consensus 371 CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n-~~rsCP~--Crk 413 (518)
T KOG1941|consen 371 CGESIGLKNERLQALPCSHIFHLRCLQEILENN-GTRSCPN--CRK 413 (518)
T ss_pred hhhhhcCCcccccccchhHHHHHHHHHHHHHhC-CCCCCcc--HHH
Confidence 998664444445556899999999999999887 7889999 985
No 62
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=94.85 E-value=0.024 Score=53.87 Aligned_cols=47 Identities=19% Similarity=0.602 Sum_probs=37.0
Q ss_pred eeeccCCCCCCccccCC------------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEP------------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P------------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
+-.|-||+.. .|.-| -+ .+|||.+--.|+..|+.+. ..||+ |+.++-
T Consensus 287 D~~C~ICmde--~~h~~~~~~~~~~~~~pKr-LpCGHilHl~CLknW~ERq---QTCPI--Cr~p~i 345 (491)
T COG5243 287 DRTCTICMDE--MFHPDHEPLPRGLDMTPKR-LPCGHILHLHCLKNWLERQ---QTCPI--CRRPVI 345 (491)
T ss_pred CCeEEEeccc--ccCCCCccCcccccCCccc-ccccceeeHHHHHHHHHhc---cCCCc--ccCccc
Confidence 5679999972 34443 44 6899999999999999875 58999 998753
No 63
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.77 E-value=0.02 Score=54.79 Aligned_cols=57 Identities=25% Similarity=0.497 Sum_probs=41.9
Q ss_pred ceeeccCCCCCCccccCC---ccccCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEP---VRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~P---v~s~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~~l~~~~L 215 (253)
....|+||.. ....+ .....|+|-||++|+.+|+... +..+.||..||...++...+
T Consensus 145 ~~~~C~iC~~---e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c 207 (384)
T KOG1812|consen 145 PKEECGICFV---EDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESC 207 (384)
T ss_pred ccccCccCcc---ccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHH
Confidence 4677999983 11222 1235799999999999999743 35689999999998876653
No 64
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=94.28 E-value=0.015 Score=59.10 Aligned_cols=69 Identities=19% Similarity=0.415 Sum_probs=55.0
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
..+.||||.. ...+|+. .+|-|.||+.|+...+........||+ |...+....+..-+...+.++++..
T Consensus 20 k~lEc~ic~~---~~~~p~~-~kc~~~~l~~~~n~~f~~~~~~~~~~l--c~~~~eK~s~~Es~r~sq~vqe~lk 88 (684)
T KOG4362|consen 20 KILECPICLE---HVKEPSL-LKCDHIFLKFCLNKLFESKKGPKQCAL--CKSDIEKRSLRESPRFSQLSKESLK 88 (684)
T ss_pred hhccCCceeE---Eeeccch-hhhhHHHHhhhhhceeeccCccccchh--hhhhhhhhhccccchHHHHHHHhcC
Confidence 4688999996 4589966 899999999999887765435788999 9998988888876666677775543
No 65
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.24 E-value=0.014 Score=56.36 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=35.1
Q ss_pred eeccCCCCCCccccCCc---cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPV---RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv---~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-+||+|+. .|..-+ ..+.|.|+|--.|++.|.-. .||| |+-..++
T Consensus 176 PTCpVCLE---RMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-----scpv--cR~~q~p 223 (493)
T KOG0804|consen 176 PTCPVCLE---RMDSSTTGILTILCNHSFHCSCLMKWWDS-----SCPV--CRYCQSP 223 (493)
T ss_pred CCcchhHh---hcCccccceeeeecccccchHHHhhcccC-----cChh--hhhhcCc
Confidence 48999996 556555 55789999999999998653 5999 9865553
No 66
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.05 E-value=0.032 Score=51.95 Aligned_cols=52 Identities=23% Similarity=0.503 Sum_probs=39.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-|+||+.... ..=++|=.+..|||+-.++++...-+++...++||. |+..-.
T Consensus 336 ~FiCPVlKe~-~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPY--CP~~~~ 387 (396)
T COG5109 336 LFICPVLKEL-CTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPY--CPEMSK 387 (396)
T ss_pred eeeccccHhh-hcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCC--CCcchh
Confidence 3899998753 234565555899999999999998777656789999 987443
No 67
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=94.01 E-value=0.094 Score=55.14 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=60.1
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
-.+..||.. ++|.+||.-..-|++-||..|..|+-.. ..=|. |+..|+.+++.+|..|+.+|+.|..
T Consensus 869 def~DPlm~---Tlm~dPV~LP~Srv~vDRsti~rhlLs~---~tdPF--NR~pLt~d~v~pn~eLK~kI~~~~~ 935 (943)
T KOG2042|consen 869 DEFLDPLMS---TLMSDPVVLPSSRVTVDRSTIERHLLSD---CTDPF--NREPLTEDMVSPNEELKAKIRCWIK 935 (943)
T ss_pred hhhhCcccc---ccCCCCccCCcccccccHHHHHHHHhcC---CCCcc--ccccCchhhcCCCHHHHHHHHHHHH
Confidence 379999999 7999999944599999999999999864 45689 9999999999999999999999976
No 68
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=93.24 E-value=0.041 Score=53.27 Aligned_cols=35 Identities=20% Similarity=0.523 Sum_probs=30.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK 195 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~ 195 (253)
.++||||+. +|++|+. .+|||+.|+.|-...+-+.
T Consensus 4 elkc~vc~~---f~~epii-l~c~h~lc~~ca~~~~~~t 38 (699)
T KOG4367|consen 4 ELKCPVCGS---FYREPII-LPCSHNLCQACARNILVQT 38 (699)
T ss_pred cccCceehh---hccCceE-eecccHHHHHHHHhhcccC
Confidence 689999995 7899999 8999999999988777543
No 69
>PF04641 Rtf2: Rtf2 RING-finger
Probab=92.95 E-value=0.12 Score=46.67 Aligned_cols=36 Identities=31% Similarity=0.588 Sum_probs=31.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK 195 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~ 195 (253)
=..|+||++|| ..||.+...|+.|.+++|.+||-..
T Consensus 34 w~~CaLS~~pL---~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 34 WTHCALSQQPL---EDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred cCcccCcCCcc---CCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 46799999864 9999878889999999999999764
No 70
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=92.61 E-value=0.011 Score=60.55 Aligned_cols=50 Identities=14% Similarity=0.337 Sum_probs=36.0
Q ss_pred ceeeccCCCCCCccccCCccc--cCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRS--VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s--~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
..-.||+|++ -+.+-... ++|+|.||..||..|-+.- -.||+ |+..|..-
T Consensus 122 ~~~~CP~Ci~---s~~DqL~~~~k~c~H~FC~~Ci~sWsR~a---qTCPi--DR~EF~~v 173 (1134)
T KOG0825|consen 122 VENQCPNCLK---SCNDQLEESEKHTAHYFCEECVGSWSRCA---QTCPV--DRGEFGEV 173 (1134)
T ss_pred hhhhhhHHHH---HHHHHhhccccccccccHHHHhhhhhhhc---ccCch--hhhhhhee
Confidence 3567999986 23444332 4799999999999997753 57999 99866443
No 71
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=92.49 E-value=0.03 Score=40.84 Aligned_cols=52 Identities=15% Similarity=0.380 Sum_probs=23.5
Q ss_pred eeeccCCCCCCccc---cCCcc---ccCCCCcccHHHHHHHHHhC--CC----C--CCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITEL---AEPVR---SVECKHIYEKNAIQAYIKSK--NA----N--ARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l---~~Pv~---s~~CgH~f~k~~I~~~l~~~--~~----~--~~CPv~GC~~~l~~ 212 (253)
++.|+||... ++ ..|+. +..|+++|=..||.+|+... .+ . -.||. |...|+.
T Consensus 2 ~~~C~IC~~~--~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~--C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSY--RLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPY--CSSPISW 67 (70)
T ss_dssp --S-SSS--S--S-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TT--T-SEEEG
T ss_pred CCCCCcCCcE--ecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcC--CCCeeeE
Confidence 5679999973 33 22432 34799999999999999752 11 1 14999 9987764
No 72
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.37 E-value=0.029 Score=51.22 Aligned_cols=59 Identities=17% Similarity=0.594 Sum_probs=41.5
Q ss_pred eeeccCCCCCCcc-------ccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCH
Q 025425 157 NISCPLSGKPITE-------LAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 219 (253)
Q Consensus 157 ~~~CPIt~~~~~~-------l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~ 219 (253)
+-.|-+|++.|.. +++-.+ ..|+|+|-..||.-|.--+ +...||- |...+..+.+..||
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~-LsCnHvFHEfCIrGWcivG-KkqtCPY--CKekVdl~rmfsnp 289 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYK-LSCNHVFHEFCIRGWCIVG-KKQTCPY--CKEKVDLKRMFSNP 289 (328)
T ss_pred cchhHhhcchheeecchhhhhhhhee-eecccchHHHhhhhheeec-CCCCCch--HHHHhhHhhhccCc
Confidence 3468888863311 113344 5799999999999998655 5678999 99877766665554
No 73
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.81 E-value=0.15 Score=49.62 Aligned_cols=54 Identities=20% Similarity=0.544 Sum_probs=40.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCC-----CCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKN-----ANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~-----~~~~CPv~GC~~~l~~~ 213 (253)
...|.||... .........|||.||..|...||..+. ..+.||..||.+.+...
T Consensus 70 ~~~c~ic~~~---~~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~ 128 (444)
T KOG1815|consen 70 DVQCGICVES---YDGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGED 128 (444)
T ss_pred cccCCcccCC---CcchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCc
Confidence 5789999853 232345479999999999999998641 12689999999876544
No 74
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.58 E-value=0.13 Score=49.27 Aligned_cols=48 Identities=17% Similarity=0.525 Sum_probs=31.9
Q ss_pred eeeccCCCCCCccccCCcccc-CCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSV-ECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~-~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
...|.||-.-+ .-..-+.+. .|||+|.-.|+.+|+..-.....||+ |+
T Consensus 4 ~A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpi--c~ 52 (465)
T KOG0827|consen 4 MAECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPI--CQ 52 (465)
T ss_pred cceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCc--ee
Confidence 56788885421 111222223 49999999999999986522257999 87
No 75
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.23 E-value=0.077 Score=37.24 Aligned_cols=44 Identities=25% Similarity=0.497 Sum_probs=34.3
Q ss_pred eeeccCCCCCCccccCCcccc--CCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSV--ECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~--~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
+-.|-||. .+||-|. .|||. .|.+|=...++.. .-.||+ |+..|
T Consensus 7 ~dECTICy------e~pvdsVlYtCGHMCmCy~Cg~rl~~~~--~g~CPi--CRapi 53 (62)
T KOG4172|consen 7 SDECTICY------EHPVDSVLYTCGHMCMCYACGLRLKKAL--HGCCPI--CRAPI 53 (62)
T ss_pred ccceeeec------cCcchHHHHHcchHHhHHHHHHHHHHcc--CCcCcc--hhhHH
Confidence 56799997 6888654 79998 6778888888764 458999 99765
No 76
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.23 E-value=0.29 Score=44.61 Aligned_cols=66 Identities=21% Similarity=0.451 Sum_probs=47.9
Q ss_pred eeccCCCCCCccc---cCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC--C---CCCCCccCHHHHHHHHHH
Q 025425 158 ISCPLSGKPITEL---AEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRK--L---QVSKVVCDSLLLVDIDEM 228 (253)
Q Consensus 158 ~~CPIt~~~~~~l---~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~--l---~~~~L~~D~~l~~~I~~~ 228 (253)
+.|-||...|..- .-| ++.+|||++|..|+...+..+ .+.||- |+.. + ....|..+..+...+...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p-~~l~c~h~~c~~c~~~l~~~~--~i~cpf--cR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIP-RVLKCGHTICQNCASKLLGNS--RILCPF--CRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCC-cccccCceehHhHHHHHhcCc--eeeccC--CCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 5677777655222 223 235799999999999999876 678899 9986 3 255678888887777765
No 77
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=0.24 Score=46.84 Aligned_cols=50 Identities=16% Similarity=0.393 Sum_probs=35.6
Q ss_pred ceeeccCCCCCCccccCC-----ccc-cCCCCcccHHHHHHHHHhCC----CCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEP-----VRS-VECKHIYEKNAIQAYIKSKN----ANARCPVAGCPRK 209 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~P-----v~s-~~CgH~f~k~~I~~~l~~~~----~~~~CPv~GC~~~ 209 (253)
....|=||+.. +..-| ..+ ..|.|+||..||..|-.... -...||. |+..
T Consensus 160 ~~k~CGICme~--i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~--CRv~ 219 (344)
T KOG1039|consen 160 SEKECGICMET--INEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPF--CRVP 219 (344)
T ss_pred ccccceehhhh--ccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCc--ccCc
Confidence 36789999983 44444 211 46999999999999975431 1467999 9863
No 78
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.65 E-value=0.17 Score=37.86 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=40.1
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-++-.||-|.-| -=.=|+.--.|.|.|-.-||..++........||. |++..+.
T Consensus 29 ~Fdg~Cp~Ck~P--gDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPm--cRq~~~~ 82 (84)
T KOG1493|consen 29 PFDGCCPDCKLP--GDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPM--CRQTWQF 82 (84)
T ss_pred ccCCcCCCCcCC--CCCCccHHHHHHHHHHHHHHHHHhcCccccccCCc--chheeEe
Confidence 345678988865 22335544589999999999999976545678999 9987654
No 79
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=87.79 E-value=0.24 Score=52.15 Aligned_cols=50 Identities=20% Similarity=0.612 Sum_probs=36.6
Q ss_pred eeccCCCCCCccc---cCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITEL---AEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l---~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-.||||.-.+ -+ +=|- +...|.|-|--.||..|++.+ +...||. |+..|+
T Consensus 1470 eECaICYsvL-~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss-~~s~CPl--CRseit 1523 (1525)
T COG5219 1470 EECAICYSVL-DMVDRSLPSKRCATCKNKFHTRCLYKWFASS-ARSNCPL--CRSEIT 1523 (1525)
T ss_pred chhhHHHHHH-HHHhccCCccccchhhhhhhHHHHHHHHHhc-CCCCCCc--cccccc
Confidence 3599997422 11 1243 334689999999999999987 6779999 997765
No 80
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=87.58 E-value=0.78 Score=31.08 Aligned_cols=43 Identities=16% Similarity=0.589 Sum_probs=30.7
Q ss_pred ccCCCCCCccccCCccccCCC-----CcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 160 CPLSGKPITELAEPVRSVECK-----HIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~Cg-----H~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
|-||+. ...-.+|+. .+|. |.|=+.|+..|+..+ +...||+ |.
T Consensus 2 CrIC~~-~~~~~~~l~-~PC~C~G~~~~vH~~Cl~~W~~~~-~~~~C~i--C~ 49 (49)
T smart00744 2 CRICHD-EGDEGDPLV-SPCRCKGSLKYVHQECLERWINES-GNKTCEI--CK 49 (49)
T ss_pred ccCCCC-CCCCCCeeE-eccccCCchhHHHHHHHHHHHHHc-CCCcCCC--CC
Confidence 667764 113356666 5664 889999999999876 4568999 74
No 81
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.79 E-value=0.42 Score=45.36 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=33.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
+-.||||..- =.+.|- .+|||.-|+.||.+++-++ ..|=. |...+
T Consensus 422 d~lCpICyA~---pi~Avf-~PC~H~SC~~CI~qHlmN~---k~CFf--CktTv 466 (489)
T KOG4692|consen 422 DNLCPICYAG---PINAVF-APCSHRSCYGCITQHLMNC---KRCFF--CKTTV 466 (489)
T ss_pred cccCcceecc---cchhhc-cCCCCchHHHHHHHHHhcC---CeeeE--eccee
Confidence 4579999841 123344 6999999999999999876 56777 77644
No 82
>COG3364 Zn-ribbon containing protein [General function prediction only]
Probab=86.59 E-value=0.35 Score=38.04 Aligned_cols=32 Identities=28% Similarity=0.704 Sum_probs=22.4
Q ss_pred CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 173 Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
|-+.+.|||+|... ..-|.+ -||--||+..+.
T Consensus 2 pH~CtrCG~vf~~g--~~~il~-----GCp~CG~nkF~y 33 (112)
T COG3364 2 PHQCTRCGEVFDDG--SEEILS-----GCPKCGCNKFLY 33 (112)
T ss_pred Cceecccccccccc--cHHHHc-----cCccccchheEe
Confidence 55678999999985 222332 499988887554
No 83
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.96 E-value=0.34 Score=43.47 Aligned_cols=51 Identities=16% Similarity=0.509 Sum_probs=34.1
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
.|--|..- -- .+|.--+.|+|+||..|... . ..-.||. |++.+....|-.+
T Consensus 5 hCn~C~~~-~~-~~~f~LTaC~HvfC~~C~k~----~-~~~~C~l--Ckk~ir~i~l~~s 55 (233)
T KOG4739|consen 5 HCNKCFRF-PS-QDPFFLTACRHVFCEPCLKA----S-SPDVCPL--CKKSIRIIQLNRS 55 (233)
T ss_pred Eecccccc-CC-CCceeeeechhhhhhhhccc----C-Ccccccc--ccceeeeeecccc
Confidence 45556541 12 67776689999999998543 2 1238999 9998766555554
No 84
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=85.79 E-value=0.24 Score=47.65 Aligned_cols=46 Identities=20% Similarity=0.535 Sum_probs=35.6
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.|-||-+ =..-|+..+|||-.|..|+..|-... .+..||. |+-.|.
T Consensus 371 LCKICae----ndKdvkIEPCGHLlCt~CLa~WQ~sd-~gq~CPF--CRcEIK 416 (563)
T KOG1785|consen 371 LCKICAE----NDKDVKIEPCGHLLCTSCLAAWQDSD-EGQTCPF--CRCEIK 416 (563)
T ss_pred HHHHhhc----cCCCcccccccchHHHHHHHhhcccC-CCCCCCc--eeeEec
Confidence 5889974 24557767999999999999987554 4678999 886554
No 85
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=84.40 E-value=1.9 Score=43.96 Aligned_cols=71 Identities=18% Similarity=0.211 Sum_probs=59.7
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCcc
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKE 234 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~~ 234 (253)
-.|..|+.. ++|++||.-..-|-+-+|+.|..++-+. ..=|. =+-+++.+++.||..|+.+|.++....++
T Consensus 853 DeFlDPLmf---timkdPV~Lp~S~i~IDRSTikahllsd---~tDPF--NRmPLtlddVtpn~eLrekIn~f~k~k~~ 923 (929)
T COG5113 853 DEFLDPLMF---TIMKDPVKLPTSRITIDRSTIKAHLLSD---GTDPF--NRMPLTLDDVTPNAELREKINRFYKCKGQ 923 (929)
T ss_pred hhhhCchhh---hcccCCeecccccccccHHHHHHHHhcC---CCCcc--ccCCCchhhcCCCHHHHHHHHHHHhcccc
Confidence 369999998 6899999977889999999999998765 23476 56689999999999999999999864443
No 86
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=83.87 E-value=0.63 Score=27.62 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=14.2
Q ss_pred eccCCCCCCccccCCccccCCCCccc
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYE 184 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~ 184 (253)
+||-|.+. +-..-..-..|||.|.
T Consensus 2 ~CP~C~~~--V~~~~~~Cp~CG~~F~ 25 (26)
T PF10571_consen 2 TCPECGAE--VPESAKFCPHCGYDFE 25 (26)
T ss_pred cCCCCcCC--chhhcCcCCCCCCCCc
Confidence 48999873 2222223345888885
No 87
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=83.06 E-value=6.6 Score=35.79 Aligned_cols=50 Identities=20% Similarity=0.376 Sum_probs=42.7
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.+.+.||+-++ .+|+. ..|+|.-...-++.+|++. ....||--||++.+.
T Consensus 211 ~~~i~CPv~gC-----~~~~~-~~~~~l~~d~el~~kIr~~-qe~~~~~~~~s~~~~ 260 (262)
T KOG2979|consen 211 EITIRCPVLGC-----ENPYY-IQPGHLDEDKELQQKIRQS-QEPAIPDETSSEEDD 260 (262)
T ss_pred CceeecccccC-----Ccccc-ccccccCchHHHHHHHHHh-ccccccccccchhhc
Confidence 34789999998 58988 7999999999999999987 678899999987653
No 88
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the PHA00626 hypothetical protein
Probab=80.50 E-value=1.3 Score=31.27 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=19.9
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHH
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQA 190 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~ 190 (253)
+|.+|.+ ..+.+....|||.|.+++.-+
T Consensus 13 rcg~cr~----~snrYkCkdCGY~ft~~~~~~ 40 (59)
T PHA00626 13 KEKTMRG----WSDDYVCCDCGYNDSKDAFGE 40 (59)
T ss_pred eeceecc----cCcceEcCCCCCeechhhhhh
Confidence 4555543 257788889999999988654
No 90
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=80.21 E-value=1.1 Score=36.62 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=24.9
Q ss_pred eeeccCCCCCCccc-cCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPITEL-AEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~~l-~~Pv~s~~CgH~f~k~ 186 (253)
...||-|++.|-.| ++|+.+.+||.+|...
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCccCcc
Confidence 46799999876444 8999999999999776
No 91
>PHA03096 p28-like protein; Provisional
Probab=79.47 E-value=1.3 Score=40.98 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=30.9
Q ss_pred eeccCCCCCCccccCCccc------cCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRS------VECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s------~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
-.|-||++. ++..|+.. ..|.|.||-.||..|.......-.||.
T Consensus 179 k~c~ic~e~--~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~ 228 (284)
T PHA03096 179 KICGICLEN--IKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPE 228 (284)
T ss_pred hhcccchhh--hhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcc
Confidence 569999984 55555432 379999999999999876432333444
No 92
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=79.02 E-value=1.6 Score=29.71 Aligned_cols=36 Identities=25% Similarity=0.341 Sum_probs=29.6
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIK 193 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~ 193 (253)
-.|++|.+.|+.+.....-..||++||..|......
T Consensus 3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred CcCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 359999999988877777778999999999776644
No 93
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=78.74 E-value=1.7 Score=41.24 Aligned_cols=47 Identities=28% Similarity=0.639 Sum_probs=31.4
Q ss_pred ccCCCCCCccccC-CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 160 CPLSGKPITELAE-PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 160 CPIt~~~~~~l~~-Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
||+|.+|+ .+.+ -+..-+||...|+-|-.. |+++ -.-+||. |+....
T Consensus 17 cplcie~m-ditdknf~pc~cgy~ic~fc~~~-irq~-lngrcpa--crr~y~ 64 (480)
T COG5175 17 CPLCIEPM-DITDKNFFPCPCGYQICQFCYNN-IRQN-LNGRCPA--CRRKYD 64 (480)
T ss_pred Cccccccc-ccccCCcccCCcccHHHHHHHHH-HHhh-ccCCChH--hhhhcc
Confidence 99999886 4443 333346899888888554 3433 2457999 987544
No 94
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=77.89 E-value=0.51 Score=33.62 Aligned_cols=33 Identities=12% Similarity=0.285 Sum_probs=19.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
.-.|++|.++|.+|..-.--..||++||..|..
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~ 41 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSS 41 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhC
Confidence 456999999998888887777899999987754
No 95
>PF09845 DUF2072: Zn-ribbon containing protein (DUF2072); InterPro: IPR018645 This archaeal Zinc-ribbon containing proteins have no known function.
Probab=77.85 E-value=1.3 Score=36.38 Aligned_cols=30 Identities=20% Similarity=0.609 Sum_probs=21.1
Q ss_pred CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRK 209 (253)
Q Consensus 173 Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~ 209 (253)
|-+.+.||++|...... +|. -||.-||++.
T Consensus 1 PH~Ct~Cg~~f~dgs~e-il~------GCP~CGg~kF 30 (131)
T PF09845_consen 1 PHQCTKCGRVFEDGSKE-ILS------GCPECGGNKF 30 (131)
T ss_pred CcccCcCCCCcCCCcHH-HHc------cCcccCCcce
Confidence 56778999999976543 222 4999777663
No 96
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=77.43 E-value=1.2 Score=45.42 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=39.2
Q ss_pred eeeccCCCCCC-ccccCCccccCCCCcccHHHHHHHHHhCCCCCCCC--CCCCCCCCCCCCCccCHHHHHHHH
Q 025425 157 NISCPLSGKPI-TELAEPVRSVECKHIYEKNAIQAYIKSKNANARCP--VAGCPRKLQVSKVVCDSLLLVDID 226 (253)
Q Consensus 157 ~~~CPIt~~~~-~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CP--v~GC~~~l~~~~L~~D~~l~~~I~ 226 (253)
-+.|+||+..| +.=..||. ..|||+-|+-|+...-.+ .|| .---.....++++..+.+|.+++.
T Consensus 11 ~l~c~ic~n~f~~~~~~Pvs-l~cghtic~~c~~~lyn~-----scp~~~De~~~~~~~~e~p~n~alL~~~~ 77 (861)
T KOG3161|consen 11 LLLCDICLNLFVVQRLEPVS-LQCGHTICGHCVQLLYNA-----SCPTKRDEDSSLMQLKEEPRNYALLRREH 77 (861)
T ss_pred HhhchHHHHHHHHHhcCccc-ccccchHHHHHHHhHhhc-----cCCCCccccchhcChhhcchhHHHHHhhc
Confidence 47899995211 11247887 899999999999876554 366 311112234555555666655544
No 97
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=76.58 E-value=2.9 Score=28.51 Aligned_cols=46 Identities=20% Similarity=0.536 Sum_probs=21.4
Q ss_pred ccCCCCCCccccCC-ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 160 CPLSGKPITELAEP-VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 160 CPIt~~~~~~l~~P-v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
||+|..++ ..++= +..=.||+-.|+.|....+... .-.||- |+...
T Consensus 1 cp~C~e~~-d~~d~~~~PC~Cgf~IC~~C~~~i~~~~--~g~CPg--Cr~~Y 47 (48)
T PF14570_consen 1 CPLCDEEL-DETDKDFYPCECGFQICRFCYHDILENE--GGRCPG--CREPY 47 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----HHHHHHHTTSS---SB-TT--T--B-
T ss_pred CCCccccc-ccCCCccccCcCCCcHHHHHHHHHHhcc--CCCCCC--CCCCC
Confidence 78888653 33331 1112599999999998887642 468998 98753
No 98
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=76.57 E-value=1.3 Score=33.64 Aligned_cols=36 Identities=25% Similarity=0.557 Sum_probs=26.5
Q ss_pred eeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 146 IVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 146 i~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
+.|+. +-.|++|+++| ...++.--+|||+|-..|+.
T Consensus 73 v~i~~------~~~C~vC~k~l--~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITE------STKCSVCGKPL--GNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECC------CCCccCcCCcC--CCceEEEeCCCeEEeccccc
Confidence 66664 34599999964 44666656999999888753
No 99
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=74.41 E-value=2.7 Score=40.52 Aligned_cols=34 Identities=24% Similarity=0.469 Sum_probs=30.1
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK 195 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~ 195 (253)
..|.+++.|| .+||- +.=|-+|+-.+|..||+..
T Consensus 41 ~hC~lt~~Pf---e~PvC-~~dg~vFd~~~Ivp~lkk~ 74 (518)
T KOG0883|consen 41 NHCSLTMLPF---EDPVC-TVDGTVFDLTAIVPWLKKH 74 (518)
T ss_pred hhceeccccc---cCccc-ccCCcEEeeehhhHHHHHc
Confidence 5799999876 99997 7889999999999999863
No 100
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=74.40 E-value=2.7 Score=38.59 Aligned_cols=55 Identities=18% Similarity=0.422 Sum_probs=32.1
Q ss_pred cceeeccCCCCCCccc----------cCCccccCCCCcccHHHHHH-HHHhC--CCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITEL----------AEPVRSVECKHIYEKNAIQA-YIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l----------~~Pv~s~~CgH~f~k~~I~~-~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
...+.||.|.+.+.-| .-|.....||.-|.|-.+++ +|+.. -+++.||. |++.|.
T Consensus 159 ~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~h--C~kAFA 226 (279)
T KOG2462|consen 159 KKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPH--CGKAFA 226 (279)
T ss_pred cccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCc--ccchhc
Confidence 4467788887743111 12444556777777776554 44432 24677887 777653
No 101
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.09 E-value=1.8 Score=45.22 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=34.5
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
-+|-.|. ..|.=|+..-.|||+|-+.|+. . +...||. |..
T Consensus 841 skCs~C~---~~LdlP~VhF~CgHsyHqhC~e----~--~~~~CP~--C~~ 880 (933)
T KOG2114|consen 841 SKCSACE---GTLDLPFVHFLCGHSYHQHCLE----D--KEDKCPK--CLP 880 (933)
T ss_pred eeecccC---CccccceeeeecccHHHHHhhc----c--CcccCCc--cch
Confidence 4799999 4679999988999999999988 2 4689999 986
No 102
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=73.60 E-value=1.6 Score=27.03 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=15.1
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 177 VECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 177 ~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
..|||+|.... ....||+ |+.
T Consensus 5 ~~CGy~y~~~~---------~~~~CP~--Cg~ 25 (33)
T cd00350 5 PVCGYIYDGEE---------APWVCPV--CGA 25 (33)
T ss_pred CCCCCEECCCc---------CCCcCcC--CCC
Confidence 46888886532 4679999 875
No 103
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=73.48 E-value=2.1 Score=33.94 Aligned_cols=30 Identities=17% Similarity=0.431 Sum_probs=19.7
Q ss_pred eeeccCCCCCCc-cccCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPIT-ELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~-~l~~Pv~s~~CgH~f~k~ 186 (253)
...||-|+..|= +-++|+.+.+||..|.-+
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence 456888887542 225677777777777655
No 104
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=71.45 E-value=3 Score=32.97 Aligned_cols=27 Identities=22% Similarity=0.689 Sum_probs=23.6
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRK 209 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~ 209 (253)
.|+|.|---||..||+.+ ..||. |.+.
T Consensus 80 ~CNHaFH~hCisrWlktr---~vCPL--dn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTR---NVCPL--DNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhhc---CcCCC--cCcc
Confidence 599999999999999976 58999 8763
No 105
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=69.82 E-value=67 Score=31.44 Aligned_cols=85 Identities=13% Similarity=0.205 Sum_probs=49.9
Q ss_pred HHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCCCCC
Q 025425 14 GRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQPGTE 93 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~~~~ 93 (253)
..|...=..+..+...+++.+++-=++|-++-.|+..-+-....++|+...+++-.+..++..+..-|..++
T Consensus 202 ~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~k-------- 273 (424)
T PF03915_consen 202 AYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEK-------- 273 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------
Confidence 344444445555556666666665566666666666544446667777777777666666666555554332
Q ss_pred hhhHHHHHHHHHhh
Q 025425 94 LTDFKKLLVDEDAK 107 (253)
Q Consensus 94 ~~~f~~~~~~~~~~ 107 (253)
|.|++.|+.++..
T Consensus 274 -p~WkKiWE~EL~~ 286 (424)
T PF03915_consen 274 -PIWKKIWESELQK 286 (424)
T ss_dssp -HHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHH
Confidence 5688888888865
No 106
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=69.41 E-value=2.9 Score=31.59 Aligned_cols=52 Identities=19% Similarity=0.368 Sum_probs=35.0
Q ss_pred eeeccCCCCCC-ccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPI-TELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~-~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.-.||-|+--. .-=+=||.--.|.|.|---||..||..+ -.||. |++.....
T Consensus 31 m~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk---~~CPl--d~q~w~~~ 83 (88)
T COG5194 31 MGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTK---GVCPL--DRQTWVLA 83 (88)
T ss_pred cCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhC---CCCCC--CCceeEEe
Confidence 34577776300 0012245545799999999999999874 47999 99866543
No 107
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=68.75 E-value=2.4 Score=38.10 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=18.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
.|.||+|..|+..=...+++ .+||+|+..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C-~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWIC-PQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEc-CCCCCCccc
Confidence 47899999876221222332 349999754
No 108
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.73 E-value=2.6 Score=44.32 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=30.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHh
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS 194 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~ 194 (253)
+=.|-+|.+| ++..|..--+|||.|-++||......
T Consensus 817 ~d~C~~C~~~--ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 817 QDSCDHCGRP--LLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ccchHHhcch--hhcCcceeeeccchHHHHHHHHHHHc
Confidence 3469999997 57889886799999999999998753
No 109
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.68 E-value=3.8 Score=38.80 Aligned_cols=46 Identities=17% Similarity=0.521 Sum_probs=34.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.-.|=||+ ...+|=+. .+|.|. -|.+|-..+--+ ...||+ |++.|.
T Consensus 290 gkeCVICl---se~rdt~v-LPCRHLCLCs~Ca~~Lr~q---~n~CPI--CRqpi~ 336 (349)
T KOG4265|consen 290 GKECVICL---SESRDTVV-LPCRHLCLCSGCAKSLRYQ---TNNCPI--CRQPIE 336 (349)
T ss_pred CCeeEEEe---cCCcceEE-ecchhhehhHhHHHHHHHh---hcCCCc--cccchH
Confidence 35699999 46677777 799998 788887765422 237999 999764
No 110
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=66.46 E-value=4.1 Score=37.53 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=37.4
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
.++.||||..-+.....++...+|||.--..|+..++..+ -.||+ |.+
T Consensus 157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~---y~CP~--C~~ 204 (276)
T KOG1940|consen 157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG---YTCPI--CSK 204 (276)
T ss_pred ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC---CCCCc--ccc
Confidence 3567999987544445555557999999889999998864 88999 987
No 111
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=66.13 E-value=62 Score=31.69 Aligned_cols=78 Identities=19% Similarity=0.226 Sum_probs=51.9
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCCCCChhhHHHH
Q 025425 21 TTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQPGTELTDFKKL 100 (253)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~~~~~~~f~~~ 100 (253)
..+..+.+.+++.+++-=++|-++=.|.+.-|-.+.-++|+...+++-.+..++..+..-++. +=|-|++.
T Consensus 213 ~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~---------eKP~WkKi 283 (426)
T smart00806 213 KKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDI---------EKPIWKKI 283 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh---------cChHHHHH
Confidence 344445556666666666666666667766665677788888888777777776655544422 22679999
Q ss_pred HHHHHhh
Q 025425 101 LVDEDAK 107 (253)
Q Consensus 101 ~~~~~~~ 107 (253)
|+.++..
T Consensus 284 WE~EL~~ 290 (426)
T smart00806 284 WEAELDK 290 (426)
T ss_pred HHHHHHH
Confidence 9988865
No 112
>PF14353 CpXC: CpXC protein
Probab=64.43 E-value=4.2 Score=32.50 Aligned_cols=56 Identities=18% Similarity=0.327 Sum_probs=31.0
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC--CCCCccCH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ--VSKVVCDS 219 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~--~~~L~~D~ 219 (253)
++||-|+.+| .-.+- +.-.-.-..+.....+...--.+.||. |+..+. ..=|+.|+
T Consensus 2 itCP~C~~~~---~~~v~-~~I~~~~~p~l~e~il~g~l~~~~CP~--Cg~~~~~~~p~lY~D~ 59 (128)
T PF14353_consen 2 ITCPHCGHEF---EFEVW-TSINADEDPELKEKILDGSLFSFTCPS--CGHKFRLEYPLLYHDP 59 (128)
T ss_pred cCCCCCCCee---EEEEE-eEEcCcCCHHHHHHHHcCCcCEEECCC--CCCceecCCCEEEEcC
Confidence 5799998654 33332 223334455556666644323567999 887543 33344444
No 113
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=63.52 E-value=6.9 Score=36.43 Aligned_cols=55 Identities=16% Similarity=0.449 Sum_probs=39.5
Q ss_pred eeccCCCCCCccccCCccccCC--CCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVEC--KHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEM 228 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~C--gH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~ 228 (253)
+-||+|.. .|.-|.. .| ||.-|..|=.. ...+||. |+..+. ++ ...+|.+.++..
T Consensus 49 leCPvC~~---~l~~Pi~--QC~nGHlaCssC~~~------~~~~CP~--Cr~~~g--~~-R~~amEkV~e~~ 105 (299)
T KOG3002|consen 49 LDCPVCFN---PLSPPIF--QCDNGHLACSSCRTK------VSNKCPT--CRLPIG--NI-RCRAMEKVAEAV 105 (299)
T ss_pred ccCchhhc---cCcccce--ecCCCcEehhhhhhh------hcccCCc--cccccc--cH-HHHHHHHHHHhc
Confidence 67999995 6788877 56 99999988331 3468999 998887 22 455666665544
No 114
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.09 E-value=5.8 Score=31.77 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=24.7
Q ss_pred eeeccCCCCCCc-cccCCccccCCCCcccHHHHHH
Q 025425 157 NISCPLSGKPIT-ELAEPVRSVECKHIYEKNAIQA 190 (253)
Q Consensus 157 ~~~CPIt~~~~~-~l~~Pv~s~~CgH~f~k~~I~~ 190 (253)
.-+||-|++.|- +=++|+.|..||.+|-++.+..
T Consensus 9 KridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 9 KRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 457999998652 2378999999999996654433
No 115
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=62.76 E-value=2 Score=33.35 Aligned_cols=47 Identities=26% Similarity=0.729 Sum_probs=14.6
Q ss_pred eeccCCCCCCccccCCccccCC--CCcccHHHHHHHHHh-CCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVEC--KHIYEKNAIQAYIKS-KNANARCPVAGCPRK 209 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~C--gH~f~k~~I~~~l~~-~~~~~~CPv~GC~~~ 209 (253)
=+||+|..++ .+.++.. ..| ||+|.| |-..++.= ..+...||+ |...
T Consensus 15 E~C~~C~~~i-~~~~~~~-~~C~~GH~w~R-C~lT~l~i~~~~~r~C~~--C~~~ 64 (99)
T PF12660_consen 15 EKCPICGAPI-PFDDLDE-AQCENGHVWPR-CALTFLPIQTPGVRVCPV--CGRR 64 (99)
T ss_dssp ---------------SSE-EE-TTS-EEEB--SSS-SBS-SS-EEE-TT--T--E
T ss_pred cccccccccc-ccCCcCE-eECCCCCEEee-eeeeeeeeccCCeeEcCC--CCCE
Confidence 5699999975 6788766 457 999976 44444421 113367999 7763
No 116
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.92 E-value=4.8 Score=37.48 Aligned_cols=41 Identities=17% Similarity=0.620 Sum_probs=30.3
Q ss_pred CccccCCCCcccHHHHHHHHHhC----------CCCCCCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEKNAIQAYIKSK----------NANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 173 Pv~s~~CgH~f~k~~I~~~l~~~----------~~~~~CPv~GC~~~l~~~~L 215 (253)
|..|--|.-.+|++|+.+++... .++..||. |++.+...|+
T Consensus 319 ~c~nc~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~--cr~~fci~dv 369 (381)
T KOG3899|consen 319 PCENCICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPT--CRKNFCIRDV 369 (381)
T ss_pred cccccccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcc--hhhceEEeee
Confidence 44444566678999999988542 36789999 9998877664
No 117
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=61.55 E-value=4.8 Score=28.23 Aligned_cols=31 Identities=19% Similarity=0.580 Sum_probs=22.5
Q ss_pred cCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 177 VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 177 ~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
..|||.-|+.|.-- . +-.-||. |...+...+
T Consensus 23 ~pCgH~I~~~~f~~----~-rYngCPf--C~~~~~~~~ 53 (55)
T PF14447_consen 23 LPCGHLICDNCFPG----E-RYNGCPF--CGTPFEFDD 53 (55)
T ss_pred ccccceeeccccCh----h-hccCCCC--CCCcccCCC
Confidence 48999999987432 1 2346999 999887665
No 118
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=61.31 E-value=1.4e+02 Score=27.89 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=39.6
Q ss_pred HHHHHHhHhHHHHHHHHHHHh---------hcCCCCChhhHHHHHHHHHhhhhcCCCCCC---CCCccc-cchHHHHh
Q 025425 66 QLMEAFGDCTHHSAAIQSVGN---------TYQPGTELTDFKKLLVDEDAKSRAASSSVP---PNDPLH-KFREAVWN 130 (253)
Q Consensus 66 el~~~~~e~~~~~~al~~l~~---------~y~~~~~~~~f~~~~~~~~~~~~~~~~~~~---~~~~~~-~F~~~i~~ 130 (253)
++-++..++.++...|+.++. .|++..+.-+....+.+++..+...-+.+. ..+..| .||-.+..
T Consensus 69 ~y~ema~~L~~LeavLqRir~G~~LVekM~~YASDQEVLdMh~FlreAL~rLrqeePq~lqa~V~td~F~E~k~rLQ~ 146 (324)
T PF12126_consen 69 DYEEMAGQLGRLEAVLQRIRTGGALVEKMKLYASDQEVLDMHGFLREALERLRQEEPQNLQAAVRTDGFDEFKARLQD 146 (324)
T ss_pred HHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhhhcCcccccceecccHHHHHHHHHH
Confidence 344455556566666665543 788877777888888888877643333332 245667 88855443
No 119
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=61.08 E-value=2.4 Score=28.47 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=16.4
Q ss_pred ccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 176 SVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 176 s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
...|||.|+.. ..+... ....||. |+.
T Consensus 8 C~~Cg~~fe~~---~~~~~~-~~~~CP~--Cg~ 34 (52)
T TIGR02605 8 CTACGHRFEVL---QKMSDD-PLATCPE--CGG 34 (52)
T ss_pred eCCCCCEeEEE---EecCCC-CCCCCCC--CCC
Confidence 45788888743 111222 4568999 876
No 120
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=59.91 E-value=14 Score=30.61 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=39.4
Q ss_pred eeeccCCCCCC--ccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPI--TELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 157 ~~~CPIt~~~~--~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
-+.|-||.+.- ..|-.| +..||..-|..|-...|+....-..||+ |...+..+.
T Consensus 80 lYeCnIC~etS~ee~FLKP--neCCgY~iCn~Cya~LWK~~~~ypvCPv--CkTSFKss~ 135 (140)
T PF05290_consen 80 LYECNICKETSAEERFLKP--NECCGYSICNACYANLWKFCNLYPVCPV--CKTSFKSSS 135 (140)
T ss_pred ceeccCcccccchhhcCCc--ccccchHHHHHHHHHHHHHcccCCCCCc--ccccccccc
Confidence 57799998621 023345 3479999999999999987645578999 998776543
No 121
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=58.53 E-value=12 Score=30.03 Aligned_cols=51 Identities=20% Similarity=0.399 Sum_probs=26.6
Q ss_pred eeeccCCCCCC---ccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPI---TELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~---~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.++||||+..- .++++-..|..| +-|++.++.+.+..+ ..-|. -+..|+.+
T Consensus 40 ~L~CPITL~iPe~GVFvkNs~~S~VC-~LyD~~Al~~Lv~~~---~~HPL--SREpit~s 93 (113)
T PF06416_consen 40 HLTCPITLCIPENGVFVKNSSGSDVC-SLYDKEALSRLVREG---APHPL--SREPITPS 93 (113)
T ss_dssp HH-BTTTTC--SCEEEEECTTTSSEE-EEEEHHHHHHHHHCT------TT--T-----TT
T ss_pred HcCCCeEEeecCCceEEecCCCCccc-eecCHHHHHHHHHcC---CCCCC--ccCCCChh
Confidence 68999998511 023333344444 459999999999876 23455 44444443
No 122
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=58.46 E-value=2.6 Score=45.98 Aligned_cols=44 Identities=18% Similarity=0.401 Sum_probs=35.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
.+.|+||++ ++++-=-...|||-||..|+..|+..+ ..||. |..
T Consensus 1153 ~~~c~ic~d---il~~~~~I~~cgh~~c~~c~~~~l~~~---s~~~~--~ks 1196 (1394)
T KOG0298|consen 1153 HFVCEICLD---ILRNQGGIAGCGHEPCCRCDELWLYAS---SRCPI--CKS 1196 (1394)
T ss_pred ccchHHHHH---HHHhcCCeeeechhHhhhHHHHHHHHh---ccCcc--hhh
Confidence 568999995 667444337999999999999999875 68999 874
No 123
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.94 E-value=58 Score=28.46 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=24.3
Q ss_pred HHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q 025425 12 VTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEK 50 (253)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~ 50 (253)
|..-|-.-+..+.+....++.+++.++..|+.+..+-..
T Consensus 126 VL~DlE~~~~el~~~vD~llr~lgg~lh~is~lt~~~vq 164 (222)
T KOG4514|consen 126 VLSDLELEAQELASSVDNLLRNLGGLLHSISSLTADNVQ 164 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH
Confidence 444455555556566666777777777777777666554
No 124
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=57.60 E-value=76 Score=25.41 Aligned_cols=62 Identities=15% Similarity=0.137 Sum_probs=36.9
Q ss_pred CcccccchHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 025425 4 TSASRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDATIQLME 69 (253)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~le~~v~el~~ 69 (253)
-+|...+.+-..+.+++....-..-...+.|..||+++|.--.-.. ...|+-|.+.+++|.+
T Consensus 20 ~~gdp~~~~~s~~~~a~ha~~~~VvaIDNKIeQAMDLVKtHLmfAV----REEVe~Lk~qI~eL~e 81 (123)
T KOG4797|consen 20 LGGDPTSNASSALSVAAHASSGSVVAIDNKIEQAMDLVKTHLMFAV----REEVEVLKEQIRELEE 81 (123)
T ss_pred ccCCcccCchhHHHHhccCCCCceEeechHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 3444455555566666655555556677889999999876422222 1335556666665543
No 125
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=57.39 E-value=5.6 Score=24.87 Aligned_cols=22 Identities=32% Similarity=0.689 Sum_probs=14.8
Q ss_pred ccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 176 SVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 176 s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
...|||+|.... .+..||+ |++
T Consensus 5 C~~CG~i~~g~~---------~p~~CP~--Cg~ 26 (34)
T cd00729 5 CPVCGYIHEGEE---------APEKCPI--CGA 26 (34)
T ss_pred CCCCCCEeECCc---------CCCcCcC--CCC
Confidence 357888886431 3458999 876
No 126
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=57.23 E-value=13 Score=25.95 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=33.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
..+||+|+++|..=.+=|....||-.|=|+|-.. . -.|-..||...+.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~---~----g~C~~~~c~~~~~ 52 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK---A----GGCINYSCGTGFE 52 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh---C----CceEeccCCCCcc
Confidence 4679999987522345557778999999999432 2 3577777765543
No 127
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=57.21 E-value=12 Score=25.47 Aligned_cols=35 Identities=23% Similarity=0.727 Sum_probs=22.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC----CCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK----NANARCPVAGCPRK 209 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~----~~~~~CPv~GC~~~ 209 (253)
+|.||.|++ .|+...+..++... .+.+.||+ |...
T Consensus 2 ~f~CP~C~~----------------~~~~~~L~~H~~~~H~~~~~~v~CPi--C~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGK----------------GFSESSLVEHCEDEHRSESKNVVCPI--CSSR 40 (54)
T ss_pred CcCCCCCCC----------------ccCHHHHHHHHHhHCcCCCCCccCCC--chhh
Confidence 577888863 24556677766542 24578999 9863
No 128
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=56.69 E-value=4.2 Score=38.63 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=27.3
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...|-||.. ...+-+- .+|||+-| |+.-+.. ...||+ |++.|.
T Consensus 305 p~lcVVcl~---e~~~~~f-vpcGh~cc--ct~cs~~----l~~CPv--CR~rI~ 347 (355)
T KOG1571|consen 305 PDLCVVCLD---EPKSAVF-VPCGHVCC--CTLCSKH----LPQCPV--CRQRIR 347 (355)
T ss_pred CCceEEecC---Cccceee-ecCCcEEE--chHHHhh----CCCCch--hHHHHH
Confidence 345777763 2344333 68999988 6555433 245999 998653
No 129
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=56.58 E-value=4.3 Score=32.26 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=31.8
Q ss_pred eeeccCCCCCCccccC-CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE-PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~-Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
.-.|.+|+.||.+|.+ +.....|+|.+|+.|=.. ..+...+.|.+ |.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~v--C~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKV--CQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHH--HHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChh--hHH
Confidence 3469999999877765 556678999999987333 22224566887 763
No 130
>PLN02189 cellulose synthase
Probab=56.17 E-value=8.2 Score=41.54 Aligned_cols=50 Identities=18% Similarity=0.428 Sum_probs=34.8
Q ss_pred eeccCCCCCCc--cccCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPIT--ELAEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~--~l~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-.|.||+.-+. .--+|. -...||.--||.|. +|-+.. +...||+ |+....
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cy-eyer~e-g~q~Cpq--Ckt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCY-EYERRE-GTQNCPQ--CKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhc-CCccCcc--cCCchh
Confidence 47999997432 111243 34568999999998 777765 6778999 987654
No 131
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=55.30 E-value=5.2 Score=25.39 Aligned_cols=12 Identities=33% Similarity=0.922 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKL 210 (253)
Q Consensus 197 ~~~~CPv~GC~~~l 210 (253)
+.++||. |++.+
T Consensus 24 ~~vrC~~--C~~~f 35 (37)
T PF13719_consen 24 RKVRCPK--CGHVF 35 (37)
T ss_pred cEEECCC--CCcEe
Confidence 4456666 65543
No 132
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=55.20 E-value=5.8 Score=25.10 Aligned_cols=8 Identities=38% Similarity=0.845 Sum_probs=4.1
Q ss_pred eeccCCCC
Q 025425 158 ISCPLSGK 165 (253)
Q Consensus 158 ~~CPIt~~ 165 (253)
+.||-|..
T Consensus 3 i~Cp~C~~ 10 (36)
T PF13717_consen 3 ITCPNCQA 10 (36)
T ss_pred EECCCCCC
Confidence 34555554
No 133
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=54.83 E-value=0.93 Score=33.30 Aligned_cols=40 Identities=25% Similarity=0.443 Sum_probs=19.8
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
+.||.|..+ +..+. ||.+|..|-..|... ..||- |.+.|.
T Consensus 2 ~~CP~C~~~-------L~~~~-~~~~C~~C~~~~~~~----a~CPd--C~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQE-------LEWQG-GHYHCEACQKDYKKE----AFCPD--CGQPLE 41 (70)
T ss_dssp -B-SSS-SB-------EEEET-TEEEETTT--EEEEE----EE-TT--T-SB-E
T ss_pred CcCCCCCCc-------cEEeC-CEEECccccccceec----ccCCC--cccHHH
Confidence 579999853 33222 777777776555332 47998 887663
No 134
>PLN03086 PRLI-interacting factor K; Provisional
Probab=54.12 E-value=13 Score=37.70 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=15.1
Q ss_pred CCccccCCCCcccHHHHHHHHHhCCCCCCCC
Q 025425 172 EPVRSVECKHIYEKNAIQAYIKSKNANARCP 202 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CP 202 (253)
+++....||..|-+..+..+....+....||
T Consensus 452 ~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp 482 (567)
T PLN03086 452 NHVHCEKCGQAFQQGEMEKHMKVFHEPLQCP 482 (567)
T ss_pred cCccCCCCCCccchHHHHHHHHhcCCCccCC
Confidence 3444445555555555555544333445555
No 135
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.89 E-value=14 Score=38.64 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=26.2
Q ss_pred eccCCCCCCccccC----CccccCCCCcccHHHHHHHHHhC
Q 025425 159 SCPLSGKPITELAE----PVRSVECKHIYEKNAIQAYIKSK 195 (253)
Q Consensus 159 ~CPIt~~~~~~l~~----Pv~s~~CgH~f~k~~I~~~l~~~ 195 (253)
+|..|..|+ +... -+.--.|||.|-+.|++.+.-++
T Consensus 786 rc~~c~~~~-l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~ 825 (846)
T KOG2066|consen 786 RCSSCFEPN-LPSGAAFDSVVVFHCGHMYHKECLMMESLRN 825 (846)
T ss_pred hhhhhcccc-cccCcccceeeEEEccchhhhcccccHHHhc
Confidence 699998764 3222 22225799999999999988765
No 136
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=52.09 E-value=1.2e+02 Score=25.38 Aligned_cols=41 Identities=17% Similarity=0.298 Sum_probs=30.6
Q ss_pred hHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhc
Q 025425 11 AVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKD 51 (253)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~ 51 (253)
.+...|-.-+.........++..++.++.-|+.+.++..+.
T Consensus 52 ~~L~~LE~~a~~ia~svd~ll~~L~~~L~~mS~~Tv~~~~~ 92 (149)
T PF10157_consen 52 AVLHDLERDAQAIAESVDSLLRSLRSSLHSMSAITVEHMET 92 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666666666667778888888899899888887764
No 137
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=51.80 E-value=7.6 Score=32.02 Aligned_cols=15 Identities=27% Similarity=0.698 Sum_probs=11.5
Q ss_pred CCCCCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKLQVS 213 (253)
Q Consensus 197 ~~~~CPv~GC~~~l~~~ 213 (253)
+.+.||. |+..|...
T Consensus 122 ~~f~Cp~--Cg~~l~~~ 136 (147)
T smart00531 122 GTFTCPR--CGEELEED 136 (147)
T ss_pred CcEECCC--CCCEEEEc
Confidence 4589999 99977544
No 138
>PRK11827 hypothetical protein; Provisional
Probab=51.44 E-value=10 Score=26.98 Aligned_cols=10 Identities=30% Similarity=0.919 Sum_probs=7.8
Q ss_pred eeccCCCCCC
Q 025425 158 ISCPLSGKPI 167 (253)
Q Consensus 158 ~~CPIt~~~~ 167 (253)
+.||+|+.++
T Consensus 9 LaCP~ckg~L 18 (60)
T PRK11827 9 IACPVCNGKL 18 (60)
T ss_pred eECCCCCCcC
Confidence 6799998754
No 139
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=51.27 E-value=7.3 Score=34.63 Aligned_cols=43 Identities=26% Similarity=0.607 Sum_probs=35.0
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
..|-+|.+ +.-.-++.-.||-.|-+.|+..|++.. ..||. |+.
T Consensus 182 k~Cn~Ch~---LvIqg~rCg~c~i~~h~~c~qty~q~~---~~cph--c~d 224 (235)
T KOG4718|consen 182 KNCNLCHC---LVIQGIRCGSCNIQYHRGCIQTYLQRR---DICPH--CGD 224 (235)
T ss_pred HHHhHhHH---HhheeeccCcccchhhhHHHHHHhccc---CcCCc--hhc
Confidence 36999996 456667777899999999999999973 68999 754
No 140
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=51.22 E-value=19 Score=31.98 Aligned_cols=33 Identities=24% Similarity=0.562 Sum_probs=20.8
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.|+|.|..+.+...+... ....||. |+..+.+.
T Consensus 121 ~C~~~~~~~~~~~~~~~~-~~p~C~~--Cgg~lrP~ 153 (235)
T cd01408 121 KCKHKYPGDWMREDIFNQ-EVPKCPR--CGGLVKPD 153 (235)
T ss_pred cCCCcCCHHHHHHHHhCC-CCccCCC--CCCCccCc
Confidence 366777766555554433 3468999 98766654
No 141
>PLN02436 cellulose synthase A
Probab=50.27 E-value=11 Score=40.75 Aligned_cols=50 Identities=24% Similarity=0.558 Sum_probs=34.7
Q ss_pred eeccCCCCCCccc--cCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITEL--AEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l--~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-.|.||+.-+.+- -+|. -...||.--||.|. +|-+.. +...||+ |.....
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cy-eyer~e-g~~~Cpq--ckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCY-EYERRE-GNQACPQ--CKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchh-hhhhhc-CCccCcc--cCCchh
Confidence 3699999743111 1233 34578999999998 777765 6778999 987554
No 142
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.02 E-value=13 Score=27.65 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=32.5
Q ss_pred CCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 180 KHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 180 gH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
-|+||.+|...-|.. .||. |+..|...-..|...|.+--...++
T Consensus 28 EcTFCadCae~~l~g-----~CPn--CGGelv~RP~RPaa~L~r~PASt~R 71 (84)
T COG3813 28 ECTFCADCAENRLHG-----LCPN--CGGELVARPIRPAAKLARYPASTRR 71 (84)
T ss_pred eeehhHhHHHHhhcC-----cCCC--CCchhhcCcCChHHHHhhCchhhhh
Confidence 579999998876653 5999 9998888877777766554444443
No 143
>PHA00732 hypothetical protein
Probab=49.44 E-value=21 Score=26.54 Aligned_cols=36 Identities=17% Similarity=0.442 Sum_probs=22.0
Q ss_pred ccccCCCCcccH-HHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 174 VRSVECKHIYEK-NAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 174 v~s~~CgH~f~k-~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.....||..|-. ..+..+++..+.+..||. |+..+.
T Consensus 2 y~C~~Cgk~F~s~s~Lk~H~r~~H~~~~C~~--CgKsF~ 38 (79)
T PHA00732 2 FKCPICGFTTVTLFALKQHARRNHTLTKCPV--CNKSYR 38 (79)
T ss_pred ccCCCCCCccCCHHHHHHHhhcccCCCccCC--CCCEeC
Confidence 344567777744 456666653224568999 988664
No 144
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=49.14 E-value=4.1 Score=25.68 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKL 210 (253)
Q Consensus 197 ~~~~CPv~GC~~~l 210 (253)
....||. |+..+
T Consensus 25 ~~~~CP~--Cg~~~ 36 (41)
T smart00834 25 PLATCPE--CGGDV 36 (41)
T ss_pred CCCCCCC--CCCcc
Confidence 4578999 88743
No 145
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=47.25 E-value=16 Score=31.83 Aligned_cols=37 Identities=11% Similarity=0.580 Sum_probs=28.1
Q ss_pred cccCCCCcccHHHHHHHHHhC---CCC-----CCCCCCCCCCCCCCC
Q 025425 175 RSVECKHIYEKNAIQAYIKSK---NAN-----ARCPVAGCPRKLQVS 213 (253)
Q Consensus 175 ~s~~CgH~f~k~~I~~~l~~~---~~~-----~~CPv~GC~~~l~~~ 213 (253)
.|..||..|-.-|+.+||+.- ..+ -.||. |+.++..+
T Consensus 186 dN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPY--CS~PialK 230 (234)
T KOG3268|consen 186 DNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPY--CSDPIALK 230 (234)
T ss_pred cccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCC--CCCcceee
Confidence 456899999999999999852 112 25999 99877643
No 146
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=45.80 E-value=2.7 Score=27.44 Aligned_cols=28 Identities=29% Similarity=0.617 Sum_probs=17.8
Q ss_pred cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 175 RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 175 ~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
+...|||.|+.-. .+ .. .....||. |+.
T Consensus 7 ~C~~Cg~~fe~~~--~~-~~-~~~~~CP~--Cg~ 34 (42)
T PF09723_consen 7 RCEECGHEFEVLQ--SI-SE-DDPVPCPE--CGS 34 (42)
T ss_pred EeCCCCCEEEEEE--Ec-CC-CCCCcCCC--CCC
Confidence 3457899987631 21 12 24678999 887
No 147
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=45.60 E-value=26 Score=32.32 Aligned_cols=55 Identities=16% Similarity=0.403 Sum_probs=38.2
Q ss_pred ceeeccCCCCCCccccC--------------Cc-cccCCCCcccHHHHHH-HHHhCCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAE--------------PV-RSVECKHIYEKNAIQA-YIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~--------------Pv-~s~~CgH~f~k~~I~~-~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.-++||-|++.+....+ ++ ....||.+|-.-.-+. +|+...-+..|++ |++.|..
T Consensus 129 ~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~i--CGKaFSR 199 (279)
T KOG2462|consen 129 PRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGI--CGKAFSR 199 (279)
T ss_pred CceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCccccc--ccccccc
Confidence 35899999986655552 22 2346999998774444 5565545789999 9998763
No 148
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.29 E-value=1.7e+02 Score=27.94 Aligned_cols=68 Identities=10% Similarity=0.201 Sum_probs=36.3
Q ss_pred HHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhc-cchHHHHH-HHHHHHHHHHHHhHhHHHHHHHHHHH
Q 025425 12 VTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKD-NQSQMVKE-LEDATIQLMEAFGDCTHHSAAIQSVG 85 (253)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~-~~~~~vk~-le~~v~el~~~~~e~~~~~~al~~l~ 85 (253)
-|.....+++...+++..-+..|.. ++...+++- .++..|+. ++..+.++-....++......++++.
T Consensus 224 qm~~~~~~I~~~~~~~~~~L~kl~~------~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s 293 (359)
T PF10498_consen 224 QMKQHKKSIESALPETKSQLDKLQQ------DISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQAS 293 (359)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666677776666666654443 555555553 33344443 55555555555555555444444333
No 149
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=45.17 E-value=14 Score=30.95 Aligned_cols=33 Identities=27% Similarity=0.627 Sum_probs=21.9
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.|++.|...-+...+... ....||. |+..+.+.
T Consensus 110 ~C~~~~~~~~~~~~~~~~-~~~~C~~--C~~~lrp~ 142 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEE-EPPRCPK--CGGLLRPD 142 (178)
T ss_dssp TTSBEEEGHHHHHHHHTT-SSCBCTT--TSCBEEEE
T ss_pred CCCccccchhhccccccc-ccccccc--cCccCCCC
Confidence 466667666666655544 4568999 99876553
No 150
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=44.98 E-value=24 Score=31.52 Aligned_cols=33 Identities=15% Similarity=0.420 Sum_probs=20.5
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.|++.|...-+...+... ....||. |+..+.+.
T Consensus 124 ~C~~~~~~~~~~~~~~~~-~~p~Cp~--Cgg~lrP~ 156 (244)
T PRK14138 124 RCGKRYTVEDVIEKLEKS-DVPRCDD--CSGLIRPN 156 (244)
T ss_pred CCCCcccHHHHHHHHhcC-CCCCCCC--CCCeECCC
Confidence 356666665555554443 3578999 98766553
No 151
>PLN03086 PRLI-interacting factor K; Provisional
Probab=44.74 E-value=31 Score=34.95 Aligned_cols=53 Identities=21% Similarity=0.424 Sum_probs=37.3
Q ss_pred eeccCCCCCCc---------cccCCccccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPIT---------ELAEPVRSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVS 213 (253)
Q Consensus 158 ~~CPIt~~~~~---------~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~ 213 (253)
+.||.|++.|. .+..|+... ||..+.+..+..++... .+...||. |...+...
T Consensus 454 ~~C~~Cgk~f~~s~LekH~~~~Hkpv~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~f--C~~~v~~g 517 (567)
T PLN03086 454 VHCEKCGQAFQQGEMEKHMKVFHEPLQCP-CGVVLEKEQMVQHQASTCPLRLITCRF--CGDMVQAG 517 (567)
T ss_pred ccCCCCCCccchHHHHHHHHhcCCCccCC-CCCCcchhHHHhhhhccCCCCceeCCC--CCCccccC
Confidence 46788987542 124577766 99999998888887532 25678999 99887533
No 152
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=44.05 E-value=17 Score=34.74 Aligned_cols=35 Identities=20% Similarity=0.622 Sum_probs=26.1
Q ss_pred CCCcccHHHHHHHHHhC----------CCCCCCCCCCCCCCCCCCCC
Q 025425 179 CKHIYEKNAIQAYIKSK----------NANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 179 CgH~f~k~~I~~~l~~~----------~~~~~CPv~GC~~~l~~~~L 215 (253)
|.=.+|-+|+-+|+..+ .+...||. |++.++..|+
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPt--CRa~FCilDV 355 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPT--CRAKFCILDV 355 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCC--Ccccceeeee
Confidence 34445678999999653 25678999 9999987764
No 153
>PF01530 zf-C2HC: Zinc finger, C2HC type; InterPro: IPR002515 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the CysCysHisCys (C2HC) type zinc finger domain found in eukaryotes. Proteins containing these domains include: MYST family histone acetyltransferases [, [] Myelin transcription factor Myt1 [] Suppressor of tumourigenicity protein 18 (ST18) [] More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2CS8_A 1PXE_A 2JX1_A 2JYD_A.
Probab=43.88 E-value=12 Score=23.24 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=7.2
Q ss_pred CCCCCCCCCCC
Q 025425 199 ARCPVAGCPRK 209 (253)
Q Consensus 199 ~~CPv~GC~~~ 209 (253)
.+||..||...
T Consensus 2 ~~CPtpGCdg~ 12 (31)
T PF01530_consen 2 LKCPTPGCDGS 12 (31)
T ss_dssp TSSSSTT--SC
T ss_pred CcCCCCCCCcc
Confidence 47999999863
No 154
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=43.51 E-value=24 Score=23.96 Aligned_cols=31 Identities=26% Similarity=0.653 Sum_probs=22.1
Q ss_pred ccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 183 YEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 183 f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
|.+--+..++..+.....||..||...+...
T Consensus 3 y~~~~~~~~i~~~~~~~~CP~~~C~~~~~~~ 33 (64)
T smart00647 3 YERLLLESYVESNPDLKWCPAPDCSAAIIVT 33 (64)
T ss_pred HHHHHHHHHHhcCCCccCCCCCCCcceEEec
Confidence 6667777888775345569999998866544
No 155
>PRK01343 zinc-binding protein; Provisional
Probab=43.42 E-value=12 Score=26.36 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=9.7
Q ss_pred ceeeccCCCCCC
Q 025425 156 LNISCPLSGKPI 167 (253)
Q Consensus 156 ~~~~CPIt~~~~ 167 (253)
...+||||++++
T Consensus 8 p~~~CP~C~k~~ 19 (57)
T PRK01343 8 PTRPCPECGKPS 19 (57)
T ss_pred CCCcCCCCCCcC
Confidence 467899999865
No 156
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=43.20 E-value=9 Score=26.68 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=20.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.++||.|+..| .+.+++. | .-+.||. |+..|..
T Consensus 2 ~~~CP~CG~~i-ev~~~~~----G----------------eiV~Cp~--CGaeleV 34 (54)
T TIGR01206 2 QFECPDCGAEI-ELENPEL----G----------------ELVICDE--CGAELEV 34 (54)
T ss_pred ccCCCCCCCEE-ecCCCcc----C----------------CEEeCCC--CCCEEEE
Confidence 36899999765 3444432 1 2457999 8886644
No 157
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=43.10 E-value=7 Score=30.25 Aligned_cols=31 Identities=32% Similarity=0.741 Sum_probs=22.6
Q ss_pred cccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 169 ELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 169 ~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
++..|-+..+||..|..+-| + .+.+||. |..
T Consensus 54 Llv~Pa~CkkCGfef~~~~i------k-~pSRCP~--CKS 84 (97)
T COG3357 54 LLVRPARCKKCGFEFRDDKI------K-KPSRCPK--CKS 84 (97)
T ss_pred EEecChhhcccCcccccccc------C-CcccCCc--chh
Confidence 55678788899999976432 1 3568999 975
No 158
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.24 E-value=58 Score=29.45 Aligned_cols=54 Identities=20% Similarity=0.592 Sum_probs=37.4
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHh---C--CCCCCCCCCCCCCCC-CCCCCc
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS---K--NANARCPVAGCPRKL-QVSKVV 216 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~---~--~~~~~CPv~GC~~~l-~~~~L~ 216 (253)
.|-+|+-++ .-.+-++ ..|=|.|--.|+.++-.+ + ...-+||. |++.| .+.+|.
T Consensus 52 NC~LC~t~L-a~gdt~R-LvCyhlfHW~ClneraA~lPanTAPaGyqCP~--Cs~eiFPp~Nlv 111 (299)
T KOG3970|consen 52 NCRLCNTPL-ASGDTTR-LVCYHLFHWKCLNERAANLPANTAPAGYQCPC--CSQEIFPPINLV 111 (299)
T ss_pred CCceeCCcc-ccCccee-ehhhhhHHHHHhhHHHhhCCCcCCCCcccCCC--CCCccCCCcccc
Confidence 477776543 3356667 789999999999998654 2 13568999 99855 344443
No 159
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=42.03 E-value=14 Score=26.05 Aligned_cols=11 Identities=45% Similarity=1.398 Sum_probs=6.1
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
..+||+|++++
T Consensus 2 ~v~CP~C~k~~ 12 (57)
T PF03884_consen 2 TVKCPICGKPV 12 (57)
T ss_dssp EEE-TTT--EE
T ss_pred cccCCCCCCee
Confidence 46899999865
No 160
>PF10157 DUF2365: Uncharacterized conserved protein (DUF2365); InterPro: IPR019314 This entry is found in a highly conserved family of proteins which have no known function.
Probab=42.02 E-value=2.1e+02 Score=23.98 Aligned_cols=19 Identities=0% Similarity=-0.034 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhHhHHHHH
Q 025425 61 EDATIQLMEAFGDCTHHSA 79 (253)
Q Consensus 61 e~~v~el~~~~~e~~~~~~ 79 (253)
.+.|..+-.+..+++..++
T Consensus 122 n~~M~~v~~La~qIK~Ik~ 140 (149)
T PF10157_consen 122 NESMKPVYKLAQQIKDIKK 140 (149)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 161
>COG3024 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.63 E-value=13 Score=26.87 Aligned_cols=13 Identities=38% Similarity=1.096 Sum_probs=10.4
Q ss_pred cceeeccCCCCCC
Q 025425 155 ILNISCPLSGKPI 167 (253)
Q Consensus 155 ~~~~~CPIt~~~~ 167 (253)
.+...||+|++|+
T Consensus 5 ~~~v~CP~Cgkpv 17 (65)
T COG3024 5 RITVPCPTCGKPV 17 (65)
T ss_pred cccccCCCCCCcc
Confidence 4578899999865
No 162
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=40.81 E-value=21 Score=23.70 Aligned_cols=11 Identities=27% Similarity=0.661 Sum_probs=6.9
Q ss_pred CCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRK 209 (253)
Q Consensus 197 ~~~~CPv~GC~~~ 209 (253)
..++||. |+..
T Consensus 18 ~~irC~~--CG~r 28 (44)
T smart00659 18 DVVRCRE--CGYR 28 (44)
T ss_pred CceECCC--CCce
Confidence 4577777 6553
No 163
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=40.62 E-value=27 Score=22.90 Aligned_cols=25 Identities=20% Similarity=0.735 Sum_probs=14.8
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
.|+-.+=..|+..|++.. ....||.
T Consensus 18 ~C~~r~H~~C~~~y~r~~-~~~~CP~ 42 (43)
T PF08746_consen 18 DCNVRLHDDCFKKYFRHR-SNPKCPN 42 (43)
T ss_dssp -S--EE-HHHHHHHTTT--SS-B-TT
T ss_pred ccCchHHHHHHHHHHhcC-CCCCCcC
Confidence 577778889999999876 3347997
No 164
>PHA02862 5L protein; Provisional
Probab=40.37 E-value=33 Score=28.85 Aligned_cols=50 Identities=18% Similarity=0.345 Sum_probs=32.5
Q ss_pred eeccCCCCCCccccCCccccCCCC-----cccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKH-----IYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH-----~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
-.|=||...- .+.+ .+|.- .--++|+++||..+ +...||. |+..+.....
T Consensus 3 diCWIC~~~~---~e~~--~PC~C~GS~K~VHq~CL~~WIn~S-~k~~CeL--CkteY~Ik~~ 57 (156)
T PHA02862 3 DICWICNDVC---DERN--NFCGCNEEYKVVHIKCMQLWINYS-KKKECNL--CKTKYNIKKT 57 (156)
T ss_pred CEEEEecCcC---CCCc--ccccccCcchhHHHHHHHHHHhcC-CCcCccC--CCCeEEEEEc
Confidence 3577887631 2222 34432 24578999999876 6789999 9987654433
No 165
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.43 E-value=3e+02 Score=25.63 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=40.0
Q ss_pred HHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHH---HHHHHHHHHHHHhHhHHHHHHHHHHHhhcCC
Q 025425 14 GRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKE---LEDATIQLMEAFGDCTHHSAAIQSVGNTYQP 90 (253)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~---le~~v~el~~~~~e~~~~~~al~~l~~~y~~ 90 (253)
+||.-+.+++-. -++-+.+++..+.-| ++++|++ =-++-..|-++..+++.++++++.+++....
T Consensus 75 akLkes~~~l~d-RetEI~eLksQL~RM-----------rEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~e 142 (305)
T PF15290_consen 75 AKLKESENRLHD-RETEIDELKSQLARM-----------REDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAE 142 (305)
T ss_pred HHHHHHHHHHHh-hHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 455555544422 334455555555444 2466666 2234446777888999999999999987754
No 166
>PF08265 YL1_C: YL1 nuclear protein C-terminal domain; InterPro: IPR013272 This domain is found at the C terminus in proteins of the YL1 family []. These proteins have been shown to be DNA-binding and may be transcription factors []. This domain is also found in proteins that do not belong to the YL1 family.
Probab=38.86 E-value=19 Score=22.07 Aligned_cols=16 Identities=25% Similarity=0.710 Sum_probs=12.9
Q ss_pred eccCCCCCCccccCCcc
Q 025425 159 SCPLSGKPITELAEPVR 175 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~ 175 (253)
.|+||+.| ..+.||.+
T Consensus 2 ~C~iTglp-A~Y~DP~T 17 (30)
T PF08265_consen 2 YCDITGLP-ARYRDPKT 17 (30)
T ss_pred cccccCCC-ccccCCCC
Confidence 49999987 58888876
No 167
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=14 Score=34.86 Aligned_cols=39 Identities=26% Similarity=0.641 Sum_probs=24.6
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
.|=-|..||.++- +...|.|+||-+|-... ..+.||. |.
T Consensus 92 fCd~Cd~PI~IYG---RmIPCkHvFCl~CAr~~-----~dK~Cp~--C~ 130 (389)
T KOG2932|consen 92 FCDRCDFPIAIYG---RMIPCKHVFCLECARSD-----SDKICPL--CD 130 (389)
T ss_pred eecccCCcceeee---cccccchhhhhhhhhcC-----ccccCcC--cc
Confidence 4777877653332 33689999999985432 2345766 64
No 168
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=38.28 E-value=40 Score=29.33 Aligned_cols=14 Identities=29% Similarity=0.617 Sum_probs=10.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
...||. |+..+.+.
T Consensus 120 ~p~C~~--Cgg~lrP~ 133 (206)
T cd01410 120 GRRCHA--CGGILKDT 133 (206)
T ss_pred CCcCCC--CcCccCCc
Confidence 467999 98766544
No 169
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=38.11 E-value=37 Score=29.56 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=17.5
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 179 CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 179 CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
|++.|....+...+... ....||. |+..+.+.
T Consensus 115 C~~~~~~~~~~~~~~~~-~~p~C~~--Cg~~lrP~ 146 (218)
T cd01407 115 CGKEYPRDELQADIDRE-EVPRCPK--CGGLLRPD 146 (218)
T ss_pred CcCCCcHHHHhHhhccC-CCCcCCC--CCCccCCC
Confidence 45545444332323332 3568999 98876544
No 170
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=36.05 E-value=56 Score=27.83 Aligned_cols=49 Identities=18% Similarity=0.502 Sum_probs=32.9
Q ss_pred ceeeccCCCCCCccccCCcccc-CCCCcc---cHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSV-ECKHIY---EKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~-~CgH~f---~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
..-.|=||...- ++..+. .|..+. =++|+..|+..+ +...||+ |+..+.
T Consensus 7 ~~~~CRIC~~~~----~~~~~PC~CkGs~k~VH~sCL~rWi~~s-~~~~Cei--C~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEY----DVVTNYCNCKNENKIVHKECLEEWINTS-KNKSCKI--CNGPYN 59 (162)
T ss_pred CCCeeEecCCCC----CCccCCcccCCCchHHHHHHHHHHHhcC-CCCcccc--cCCeEE
Confidence 356688888632 233321 354433 678999999987 6789999 988653
No 171
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=35.96 E-value=41 Score=28.82 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=19.5
Q ss_pred CCCCCCCCCCCCCCCCC-CccCHHHHHHHHHHHH
Q 025425 198 NARCPVAGCPRKLQVSK-VVCDSLLLVDIDEMRR 230 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~~-L~~D~~l~~~I~~~~~ 230 (253)
.+.||. |+..|...| -..-..|..+|.....
T Consensus 136 ~F~Cp~--Cg~~L~~~dn~~~~~~l~~~I~~l~~ 167 (178)
T PRK06266 136 GFRCPQ--CGEMLEEYDNSELIKELKEQIKELEE 167 (178)
T ss_pred CCcCCC--CCCCCeecccHHHHHHHHHHHHHHHH
Confidence 599999 999876542 2222345666666654
No 172
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=35.54 E-value=1.8e+02 Score=31.02 Aligned_cols=41 Identities=15% Similarity=0.200 Sum_probs=29.0
Q ss_pred chHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhcc
Q 025425 10 DAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDN 52 (253)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~ 52 (253)
.++-..|+.++..+... .--..++.+.+.++++|+.+|+-+
T Consensus 426 ~~~yL~Lr~a~~rL~~~--~~~~~~~~v~~~LW~lAl~iEdG~ 466 (820)
T PF13779_consen 426 PGHYLGLRSARRRLERA--RTDEALREVADLLWDLALRIEDGD 466 (820)
T ss_pred HHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhhcCc
Confidence 44555666666666522 234577889999999999999853
No 173
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=35.53 E-value=18 Score=25.82 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=3.6
Q ss_pred eeeccCCC
Q 025425 157 NISCPLSG 164 (253)
Q Consensus 157 ~~~CPIt~ 164 (253)
.+.||-|+
T Consensus 53 ~L~Cp~c~ 60 (68)
T PF03966_consen 53 ELICPECG 60 (68)
T ss_dssp EEEETTTT
T ss_pred EEEcCCCC
Confidence 34444444
No 174
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.38 E-value=20 Score=35.28 Aligned_cols=66 Identities=21% Similarity=0.308 Sum_probs=41.0
Q ss_pred ccceeeccCCCCCCccccCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCC-CCCCCCccCHHHHHHHHH
Q 025425 154 NILNISCPLSGKPITELAEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRK-LQVSKVVCDSLLLVDIDE 227 (253)
Q Consensus 154 ~~~~~~CPIt~~~~~~l~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~-l~~~~L~~D~~l~~~I~~ 227 (253)
....+.||+|.++ .|.+-+ ....|.-+||..||...+-.. .||. |.+. ..-.+|.+..-++..+..
T Consensus 216 ~~e~~~c~~~~~~--~~~~~~l~~~~~~~~~~~~~i~~~l~~~----~~~~--c~~~~~~~~~~~~p~~~r~~~n~ 283 (448)
T KOG0314|consen 216 LPEGLQCPLCGKE--VMLDAALLSKCCLKSFCDKCIRDALISK----SMCV--CGASNVLADDLLPPKTLRDTINR 283 (448)
T ss_pred CCccccCceecch--hhHHHHHhhhhhcccCCccccccccccc----cCCc--chhhcccccccCCchhhHHHHHH
Confidence 3456899999764 344444 557899999999999988654 3444 5442 223334444444444433
No 175
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=34.34 E-value=2.4e+02 Score=26.23 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHhhcC------C--CCChhhHHHHHHHHHh
Q 025425 60 LEDATIQLMEAFGDCTHHSAAIQSVGNTYQ------P--GTELTDFKKLLVDEDA 106 (253)
Q Consensus 60 le~~v~el~~~~~e~~~~~~al~~l~~~y~------~--~~~~~~f~~~~~~~~~ 106 (253)
|.....+...+..++.+.+.-|+...+|+. | ..+|.+|.+.+++.|.
T Consensus 128 Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~ 182 (338)
T KOG3647|consen 128 LNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQ 182 (338)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666665555433 2 2455555555555443
No 176
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.55 E-value=47 Score=32.34 Aligned_cols=36 Identities=22% Similarity=0.291 Sum_probs=32.1
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAY 191 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~ 191 (253)
-.|.||.+.++|+.+..=|-...-|.+||-++|.+.
T Consensus 100 geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 100 GEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 379999999999888888876788999999999986
No 177
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=33.33 E-value=12 Score=35.09 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=28.8
Q ss_pred cceeeccCCCCCCccccCC-ccccCCCCcccHHHHHHHHHh
Q 025425 155 ILNISCPLSGKPITELAEP-VRSVECKHIYEKNAIQAYIKS 194 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~P-v~s~~CgH~f~k~~I~~~l~~ 194 (253)
..+..|-||+- .+-.-| ++-+.|-|-|--.|+..||..
T Consensus 113 ~p~gqCvICLy--gfa~~~~ft~T~C~Hy~H~~ClaRyl~~ 151 (368)
T KOG4445|consen 113 HPNGQCVICLY--GFASSPAFTVTACDHYMHFACLARYLTE 151 (368)
T ss_pred CCCCceEEEEE--eecCCCceeeehhHHHHHHHHHHHHHHH
Confidence 34666888874 445667 666899999999999999863
No 178
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=33.15 E-value=44 Score=23.55 Aligned_cols=29 Identities=17% Similarity=0.484 Sum_probs=22.0
Q ss_pred CCC--CcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 178 ECK--HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~Cg--H~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.|. .+||.+|....|.. .||. |+..|..+
T Consensus 24 ICSfECTFC~~C~e~~l~~-----~CPN--CgGelv~R 54 (57)
T PF06906_consen 24 ICSFECTFCADCAETMLNG-----VCPN--CGGELVRR 54 (57)
T ss_pred EEeEeCcccHHHHHHHhcC-----cCcC--CCCccccC
Confidence 454 47999999998853 5999 98877543
No 179
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=32.79 E-value=8.4 Score=26.23 Aligned_cols=28 Identities=18% Similarity=0.440 Sum_probs=8.8
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 188 IQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 188 I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
+..|+..+.....||.+||...+...+.
T Consensus 8 ~~~~~~~~~~~~~Cp~~~C~~~~~~~~~ 35 (64)
T PF01485_consen 8 LKRYLESDPNIRWCPNPDCEYIIEKDDG 35 (64)
T ss_dssp CHS---S---CC--TTSST---ECS-SS
T ss_pred HHHHHHCCCCccCCCCCCCcccEEecCC
Confidence 3445543322346777777776655443
No 180
>COG1655 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.78 E-value=28 Score=31.51 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=21.2
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 185 KNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 185 k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
+.+|..++-.. .+.||| |+..+....+.-
T Consensus 8 K~s~~s~f~kk--~ieCPv--C~tkFkkeev~t 36 (267)
T COG1655 8 KTSINSLFYKK--TIECPV--CNTKFKKEEVKT 36 (267)
T ss_pred hhhHHHHHhhc--eeccCc--ccchhhhhheec
Confidence 46788888764 689999 998776655443
No 181
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=32.42 E-value=23 Score=37.29 Aligned_cols=47 Identities=15% Similarity=0.137 Sum_probs=32.7
Q ss_pred eeeccCCCCCCccccCCccc------cCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRS------VECKHIYEKNAIQAYIKSK---NANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s------~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~ 208 (253)
+-+|++|.. .+.+||-+ ..|+|.||..||..|..+- .....||. |..
T Consensus 96 s~Ss~~C~~---E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~F--C~~ 151 (1134)
T KOG0825|consen 96 SDTSPVCEK---EHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYF--CEE 151 (1134)
T ss_pred ccccchhhe---ecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhcccccccccc--HHH
Confidence 456888874 56775532 1499999999999998652 13445777 765
No 182
>PF01608 I_LWEQ: I/LWEQ domain; InterPro: IPR002558 I/LWEQ domains bind to actin. It has been shown that the I/LWEQ domains from mouse talin P26039 from SWISSPROT and yeast Sla2p P33338 from SWISSPROT interact with F-actin []. The domain has four conserved blocks, the name of the domain is derived from the initial conserved amino acid of each of the four blocks []. I/LWEQ domains can be placed into four major groups based on sequence similarity: Metazoan talin. Dictyostelium discoideum (Slime mould) TalA/TalB P54633 from SWISSPROT and SLA110. Metazoan Hip1p O00291 from SWISSPROT. Saccharomyces cerevisiae Sla2p P33338 from SWISSPROT. ; GO: 0003779 actin binding; PDB: 2QDQ_A 2JSW_A 1R0D_B.
Probab=32.26 E-value=2.2e+02 Score=23.90 Aligned_cols=79 Identities=11% Similarity=0.222 Sum_probs=31.7
Q ss_pred cccchHHHHHHHhHhhhccchhhHHHHHHHHHHHHHH-HHHHHHhccc-hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 025425 7 SRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKE-IAVDLEKDNQ-SQMVKELEDATIQLMEAFGDCTHHSAAIQSV 84 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-vA~~le~~~~-~~~vk~le~~v~el~~~~~e~~~~~~al~~l 84 (253)
.+.|....+|..+......-+..|+.-.+.+.....+ -..++..-.. .....+++.-+ ++++++++|..-+.-|-.+
T Consensus 66 ~~~S~~~~~L~~As~~V~~At~~LV~av~~~~~~~~~~~~~d~s~ls~~~~k~~eMe~Qv-~iL~lE~eLe~ar~kL~~l 144 (152)
T PF01608_consen 66 DPNSKTQDRLEQASKAVKKATENLVAAVKAAIEQEEEQEEVDFSKLSLHQAKRQEMEAQV-RILKLEKELEKARKKLAEL 144 (152)
T ss_dssp -TTSCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH----------HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555544444444444443333322 1111111111 12222233333 3566666666555555444
Q ss_pred Hh
Q 025425 85 GN 86 (253)
Q Consensus 85 ~~ 86 (253)
+.
T Consensus 145 Rk 146 (152)
T PF01608_consen 145 RK 146 (152)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 183
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=32.22 E-value=31 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.620 Sum_probs=11.1
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
.|||.|... |..... +...||.
T Consensus 33 ~Cgh~w~~~-v~~R~~---~~~~CP~ 54 (55)
T PF14311_consen 33 KCGHEWKAS-VNDRTR---RGKGCPY 54 (55)
T ss_pred CCCCeeEcc-Hhhhcc---CCCCCCC
Confidence 466666533 222221 3467887
No 184
>PF10426 zf-RAG1: Recombination-activating protein 1 zinc-finger domain; InterPro: IPR019485 During lymphocyte development, the genes encoding immunoglobulins and T-cell receptors are assembled from variable (V), diversity (D), and joining (J) gene segments. This combinatorial process, known as V(D)J recombination, allows the generation of an enormous range of binding specificities from a limited amount of genetic information. The V(D)J recombination-activating proteins 1 and 2 (RAG1 and RAG2) form a complex that initiates this process by binding to the conserved recombination signal sequences (RSS) and introducing a double-strand break between the RSS and the adjacent coding segment. These breaks are generated in two steps, nicking of one strand (hydrolysis), followed by hairpin formation (transesterification). RAG1/2 has also been shown to function as a transposase in vitro, and to possess RSS-independent endonuclease activity (end processing) and hairpin opening. RAG1 alone can bind to RSS but stable, efficient binding requires RAG2. All known catalytic activities require the presence of both proteins. For more information see []. Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a C2H2-type zinc-finger domain found in the RAG1 protein. The structure contains the characteristic two-stranded beta-sheet and alpha-helix of a classical zinc-finger. The domain binds one zinc and, in complex with an adjacent RING-type zinc finger domain, helps to stabilise the whole of the dimerisation region of recombination activating protein 1 (RAG1) []. The function of the whole is to bind double-stranded DNA. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0016881 acid-amino acid ligase activity; PDB: 1RMD_A.
Probab=32.01 E-value=9.2 Score=23.53 Aligned_cols=13 Identities=38% Similarity=1.060 Sum_probs=5.7
Q ss_pred CCCCCCCCCCCCC
Q 025425 199 ARCPVAGCPRKLQ 211 (253)
Q Consensus 199 ~~CPv~GC~~~l~ 211 (253)
++||+.+|...+.
T Consensus 3 vrCPvkdC~EEv~ 15 (30)
T PF10426_consen 3 VRCPVKDCDEEVS 15 (30)
T ss_dssp EE--STT---EEE
T ss_pred cccccccCcchhh
Confidence 5799999987653
No 185
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=31.75 E-value=2.8e+02 Score=29.68 Aligned_cols=46 Identities=13% Similarity=0.095 Sum_probs=28.0
Q ss_pred HHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 025425 12 VTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKE 59 (253)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~ 59 (253)
+-..|+.+...+..-. .-.+++...+.++++|+.+|+-+-++-.+.
T Consensus 459 ~yL~Lr~a~~rL~~a~--~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~ 504 (851)
T TIGR02302 459 HYLGLYTIRTRLERAR--TDDALRDVADNLWSLALGIEDGDLSDAERR 504 (851)
T ss_pred HHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 3344555555543332 235568888999999999998543333333
No 186
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=31.73 E-value=40 Score=35.50 Aligned_cols=48 Identities=15% Similarity=0.426 Sum_probs=32.8
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
...+.|-||...+ -.--...-.|||+--.+|.+.|++.+ -.||. ||+-
T Consensus 1026 ~~~~~C~~C~l~V--~gss~~Cg~C~Hv~H~sc~~eWf~~g---d~Cps-GCGC 1073 (1081)
T KOG0309|consen 1026 GFTFQCAICHLAV--RGSSNFCGTCGHVGHTSCMMEWFRTG---DVCPS-GCGC 1073 (1081)
T ss_pred cceeeeeeEeeEe--eccchhhccccccccHHHHHHHHhcC---CcCCC-CCCc
Confidence 3457788887422 11122234699999999999999975 37996 7763
No 187
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=31.47 E-value=27 Score=32.56 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=27.5
Q ss_pred eeeccCCCCCCccccCCccccCC----CCcccHHHHHHHHHhC
Q 025425 157 NISCPLSGKPITELAEPVRSVEC----KHIYEKNAIQAYIKSK 195 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~C----gH~f~k~~I~~~l~~~ 195 (253)
.|.|-||.+ .|+|--- ..| .|-||--|=.+.|++.
T Consensus 268 pLcCTLC~E---RLEDTHF-VQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 268 PLCCTLCHE---RLEDTHF-VQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred ceeehhhhh---hhccCce-eecCCCcccceecccCHHHHHhh
Confidence 489999996 6677654 456 6889999999999764
No 188
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=31.45 E-value=29 Score=39.38 Aligned_cols=50 Identities=20% Similarity=0.551 Sum_probs=36.1
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC--C-----CCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK--N-----ANARCPVAGCPRKLQ 211 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~-----~~~~CPv~GC~~~l~ 211 (253)
-|-||.-. .+-..|..-..|+|+|--.|....|.+. + +-+.||+ |.+.|.
T Consensus 3488 mCmICFTE-~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPi--C~n~In 3544 (3738)
T KOG1428|consen 3488 MCMICFTE-ALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPI--CKNKIN 3544 (3738)
T ss_pred eEEEEehh-hhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeeccc--ccchhh
Confidence 46666542 2445687768999999999998888763 1 3457999 998764
No 189
>COG4640 Predicted membrane protein [Function unknown]
Probab=31.21 E-value=25 Score=34.10 Aligned_cols=26 Identities=23% Similarity=0.634 Sum_probs=21.0
Q ss_pred eccCCCCCCccccCCccccCCCCcccHH
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
.||-|+. .-.++-|.+++|||.|...
T Consensus 3 fC~kcG~--qk~Ed~~qC~qCG~~~t~~ 28 (465)
T COG4640 3 FCPKCGS--QKAEDDVQCTQCGHKFTSR 28 (465)
T ss_pred ccccccc--ccccccccccccCCcCCch
Confidence 5999995 3678899999999998643
No 190
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=30.96 E-value=49 Score=25.11 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=24.7
Q ss_pred CcccccchHHHHHHHhHhhhccchhhHHH
Q 025425 4 TSASRHDAVTGRIRNAATTLYNDNNTVIG 32 (253)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 (253)
-|||.+|.|.++|++-++.+.+.+++.-+
T Consensus 14 CSGnSvsEVL~~~k~N~D~~~aL~~ETKa 42 (97)
T PF11043_consen 14 CSGNSVSEVLDNIKNNYDAFMALPPETKA 42 (97)
T ss_pred ccCccHHHHHHHHHHHHHHHHcCChhhHH
Confidence 48999999999999999998888866543
No 191
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=30.08 E-value=65 Score=22.81 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=20.1
Q ss_pred CCCCCCCCCCCCCCCCCccCHHHHHHHH
Q 025425 199 ARCPVAGCPRKLQVSKVVCDSLLLVDID 226 (253)
Q Consensus 199 ~~CPv~GC~~~l~~~~L~~D~~l~~~I~ 226 (253)
..||+ |+..|.++....++.-+..-.
T Consensus 4 kHC~~--CG~~Ip~~~~fCS~~C~~~~~ 29 (59)
T PF09889_consen 4 KHCPV--CGKPIPPDESFCSPKCREEYR 29 (59)
T ss_pred CcCCc--CCCcCCcchhhhCHHHHHHHH
Confidence 47999 999999988888876554433
No 192
>KOG2682 consensus NAD-dependent histone deacetylases and class I sirtuins (SIR2 family) [Chromatin structure and dynamics; Transcription]
Probab=29.96 E-value=49 Score=30.25 Aligned_cols=34 Identities=26% Similarity=0.529 Sum_probs=26.7
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.|+|.|.-+-+..-+-+. ...+|++ |...+.+.=
T Consensus 158 ~C~~~yp~e~~ka~i~~~-~vpkC~v--C~~lVKP~I 191 (314)
T KOG2682|consen 158 SCRHEYPLEWMKAKIMSE-VVPKCEV--CQGLVKPDI 191 (314)
T ss_pred hhcCcCCHHHHHHHHHhc-cCCCCch--hhccccccE
Confidence 699999988888877665 5679999 998776553
No 193
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=29.93 E-value=22 Score=36.04 Aligned_cols=41 Identities=24% Similarity=0.682 Sum_probs=29.8
Q ss_pred eeeccCCCCCCccccCCc------cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPV------RSVECKHIYEKNAIQAYIKSKNANARCPVAGCP 207 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv------~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~ 207 (253)
-+.|+||.. +.+--|. +...||++|=+.|+.. . ...||. |-
T Consensus 511 gfiCe~Cq~--~~iiyPF~~~~~~rC~~C~avfH~~C~~r----~--s~~CPr--C~ 557 (580)
T KOG1829|consen 511 GFICELCQH--NDIIYPFETRNTRRCSTCLAVFHKKCLRR----K--SPCCPR--CE 557 (580)
T ss_pred eeeeeeccC--CCcccccccccceeHHHHHHHHHHHHHhc----c--CCCCCc--hH
Confidence 588999976 6777777 3346999999888433 2 445998 85
No 194
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=29.79 E-value=29 Score=36.73 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=24.2
Q ss_pred eeccCCCCCCccccC-----CccccCCCCcccHHHHHHHH
Q 025425 158 ISCPLSGKPITELAE-----PVRSVECKHIYEKNAIQAYI 192 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~-----Pv~s~~CgH~f~k~~I~~~l 192 (253)
-.|+.|.++|..+.. .-=...||++||..|-...+
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 469999998744422 22245799999999975543
No 195
>PRK00418 DNA gyrase inhibitor; Reviewed
Probab=29.33 E-value=38 Score=24.33 Aligned_cols=37 Identities=24% Similarity=0.590 Sum_probs=20.1
Q ss_pred ceeeccCCCCCCccc--cCCccccCCCCcccHHHHHHHHHh
Q 025425 156 LNISCPLSGKPITEL--AEPVRSVECKHIYEKNAIQAYIKS 194 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l--~~Pv~s~~CgH~f~k~~I~~~l~~ 194 (253)
....||+|++++ .. .+|++ .-|...--.-=|..|+..
T Consensus 5 ~~v~CP~C~k~~-~w~~~~~~r-PFCS~RCk~IDLg~W~~e 43 (62)
T PRK00418 5 ITVNCPTCGKPV-EWGEISPFR-PFCSKRCQLIDLGEWAAE 43 (62)
T ss_pred ccccCCCCCCcc-cccCCCCcC-CcccHHHHhhhHHHHHcC
Confidence 357899999864 22 35665 344433222235555554
No 196
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=28.86 E-value=30 Score=34.28 Aligned_cols=10 Identities=30% Similarity=0.338 Sum_probs=5.9
Q ss_pred cceeeccCCC
Q 025425 155 ILNISCPLSG 164 (253)
Q Consensus 155 ~~~~~CPIt~ 164 (253)
+..+.||-|+
T Consensus 24 i~~~yCp~CL 33 (483)
T PF05502_consen 24 IDSYYCPNCL 33 (483)
T ss_pred cceeECcccc
Confidence 3456666665
No 197
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=28.53 E-value=67 Score=26.22 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=22.5
Q ss_pred CCCCCCCCCCCC-CCCCCCCccCHHHHHHHHHHHH
Q 025425 197 ANARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 197 ~~~~CPv~GC~~-~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
+..+||+ |.+ .|.-++=.-...|+.+|.+...
T Consensus 39 ~~LRC~v--CqnqsiadS~a~iA~dmR~~Vr~~i~ 71 (126)
T TIGR03147 39 KSLRCPQ--CQNQNLVESNSPIAYDLRHEVYSMVN 71 (126)
T ss_pred HhCCCCC--CCCCChhhcCCHHHHHHHHHHHHHHH
Confidence 3589999 886 5665555555567788877765
No 198
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.23 E-value=71 Score=25.01 Aligned_cols=30 Identities=17% Similarity=0.507 Sum_probs=22.5
Q ss_pred cCC---CCcccHHHHHHHHHhC------CCCCCCCCCCCCC
Q 025425 177 VEC---KHIYEKNAIQAYIKSK------NANARCPVAGCPR 208 (253)
Q Consensus 177 ~~C---gH~f~k~~I~~~l~~~------~~~~~CPv~GC~~ 208 (253)
..| +-.||..||......+ ...+.||. |+.
T Consensus 31 ~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~--Crg 69 (105)
T PF10497_consen 31 SSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPK--CRG 69 (105)
T ss_pred CCCccCcceehHhHHHHHHhhhHHHHhcCCceECCC--CCC
Confidence 456 7789999988876542 25688999 887
No 199
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=27.66 E-value=54 Score=34.81 Aligned_cols=50 Identities=26% Similarity=0.628 Sum_probs=39.6
Q ss_pred ceeeccCCCCCCccccCCc-cccCCCCcccHHHHHHHHHhC----CCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPV-RSVECKHIYEKNAIQAYIKSK----NANARCPVAGCPR 208 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv-~s~~CgH~f~k~~I~~~l~~~----~~~~~CPv~GC~~ 208 (253)
..|.|-||...| --..|| ..+.|=|+|--.||..|-++. ...++||. |..
T Consensus 190 ~~yeCmIC~e~I-~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~--Cqs 244 (950)
T KOG1952|consen 190 RKYECMICTERI-KRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPA--CQS 244 (950)
T ss_pred CceEEEEeeeec-cccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCc--ccc
Confidence 379999999875 556777 445699999999999998752 24689999 984
No 200
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=27.53 E-value=3.2e+02 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=3.5
Q ss_pred hHHHHHHHhHhhhccchh-hHHHHHHHHHHHHHH
Q 025425 11 AVTGRIRNAATTLYNDNN-TVIGEIRRALGMIKE 43 (253)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 43 (253)
=|..||+..+..-++.-. -++.++..++.-+..
T Consensus 83 hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL~~ 116 (171)
T PF04799_consen 83 HATEKLRLIVSFTSANCSHQVQQELSSTFARLCQ 116 (171)
T ss_dssp ---------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 456677776665555443 456666666554433
No 201
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=27.22 E-value=57 Score=28.58 Aligned_cols=14 Identities=29% Similarity=0.714 Sum_probs=10.0
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
...||. |+..+.+.
T Consensus 136 ~p~C~~--Cgg~lrP~ 149 (222)
T cd01413 136 VPRCPK--CGGIIRPD 149 (222)
T ss_pred CCcCCC--CCCccCCC
Confidence 568999 98766543
No 202
>PLN02400 cellulose synthase
Probab=27.02 E-value=33 Score=37.27 Aligned_cols=49 Identities=18% Similarity=0.465 Sum_probs=32.1
Q ss_pred eccCCCCCCcccc--CC-ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELA--EP-VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 159 ~CPIt~~~~~~l~--~P-v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.|-||+.-+.+-. +| |-...|+.--||.|. +|=++. +...||+ |+....
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCY-EYERke-Gnq~CPQ--CkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCY-EYERKD-GTQCCPQ--CKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchh-heeccc-CCccCcc--cCCccc
Confidence 6889886321111 13 344578888999997 665544 5678999 987554
No 203
>PRK11032 hypothetical protein; Provisional
Probab=26.98 E-value=2.3e+02 Score=23.98 Aligned_cols=9 Identities=22% Similarity=0.512 Sum_probs=5.1
Q ss_pred eeeccCCCC
Q 025425 157 NISCPLSGK 165 (253)
Q Consensus 157 ~~~CPIt~~ 165 (253)
.+.|--|+.
T Consensus 124 ~LvC~~Cg~ 132 (160)
T PRK11032 124 NLVCEKCHH 132 (160)
T ss_pred eEEecCCCC
Confidence 566655554
No 204
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=26.92 E-value=68 Score=28.30 Aligned_cols=29 Identities=24% Similarity=0.500 Sum_probs=20.3
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIK 193 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~ 193 (253)
.-+.||.|++.| -|-+ |-=-+++|.+|+.
T Consensus 86 kIYICPFTGKVF---~DNt------~~nPQDAIYDWvS 114 (238)
T PF10915_consen 86 KIYICPFTGKVF---GDNT------HPNPQDAIYDWVS 114 (238)
T ss_pred eEEEcCCcCccc---cCCC------CCChHHHHHHHHh
Confidence 458999999855 3332 3334689999986
No 205
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=26.49 E-value=67 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=22.7
Q ss_pred CCCCCCCCCCCC-CCCCCCCccCHHHHHHHHHHHH
Q 025425 197 ANARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 197 ~~~~CPv~GC~~-~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
...+||+ |.+ .|.-++-.-...|+.+|.+...
T Consensus 39 ~~LRC~v--CqnqsiadSna~iA~dmR~~Vr~~i~ 71 (126)
T PRK10144 39 SQLRCPQ--CQNQNLLESNAPVAVSMRHQVYSMVA 71 (126)
T ss_pred HcCCCCC--CCCCChhhcCCHHHHHHHHHHHHHHH
Confidence 3589999 987 5665555555567777777765
No 206
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=26.13 E-value=20 Score=24.48 Aligned_cols=10 Identities=40% Similarity=0.936 Sum_probs=7.8
Q ss_pred CCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPR 208 (253)
Q Consensus 197 ~~~~CPv~GC~~ 208 (253)
..+.||+ |+.
T Consensus 33 ~~w~CP~--C~a 42 (50)
T cd00730 33 DDWVCPV--CGA 42 (50)
T ss_pred CCCCCCC--CCC
Confidence 3579999 875
No 207
>PRK10869 recombination and repair protein; Provisional
Probab=25.81 E-value=3.6e+02 Score=27.09 Aligned_cols=10 Identities=10% Similarity=-0.054 Sum_probs=4.9
Q ss_pred HHHHHhhcCC
Q 025425 81 IQSVGNTYQP 90 (253)
Q Consensus 81 l~~l~~~y~~ 90 (253)
+..++.+|.+
T Consensus 308 l~~L~rKyg~ 317 (553)
T PRK10869 308 QISLARKHHV 317 (553)
T ss_pred HHHHHHHhCC
Confidence 3445555554
No 208
>smart00154 ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.
Probab=25.65 E-value=50 Score=21.18 Aligned_cols=25 Identities=12% Similarity=0.301 Sum_probs=16.5
Q ss_pred ccCCCCCCccccCCccccCCCCcccHH
Q 025425 160 CPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 160 CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
|-+|.+. ++.-|+.-..|+.+||..
T Consensus 1 C~~C~~~--~~l~~f~C~~C~~~FC~~ 25 (39)
T smart00154 1 CHFCRKK--VGLTGFKCRHCGNLFCGE 25 (39)
T ss_pred CcccCCc--ccccCeECCccCCccccc
Confidence 4456652 333388877799999864
No 209
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=25.53 E-value=3.6e+02 Score=21.68 Aligned_cols=34 Identities=12% Similarity=0.144 Sum_probs=23.4
Q ss_pred ccccchHHHHHHHhHhhhccchhhHHHHHHHHHH
Q 025425 6 ASRHDAVTGRIRNAATTLYNDNNTVIGEIRRALG 39 (253)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (253)
++...+.+.|+.+.++.+-.+...+...+...-.
T Consensus 11 ~~~~~~~ve~L~s~lr~~E~E~~~l~~el~~l~~ 44 (120)
T PF12325_consen 11 GGPSVQLVERLQSQLRRLEGELASLQEELARLEA 44 (120)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444567788888888887777777766655433
No 210
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=25.37 E-value=53 Score=27.48 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.2
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
.+.||. |+..|...
T Consensus 128 ~F~Cp~--Cg~~L~~~ 141 (158)
T TIGR00373 128 NFTCPR--CGAMLDYL 141 (158)
T ss_pred CCcCCC--CCCEeeec
Confidence 599999 99987544
No 211
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=25.05 E-value=48 Score=36.11 Aligned_cols=49 Identities=24% Similarity=0.558 Sum_probs=32.5
Q ss_pred eccCCCCCCcccc--CC-ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITELA--EP-VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 159 ~CPIt~~~~~~l~--~P-v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.|-||+.-+.+-. +| |-...||.--||.|. +|=++. +...||+ |.....
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCY-EYEr~e-G~q~CPq--CktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCY-EYERKD-GNQSCPQ--CKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchh-hhhhhc-CCccCCc--cCCchh
Confidence 5888886321111 13 344578888999997 776554 6778999 987554
No 212
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=24.99 E-value=3e+02 Score=21.69 Aligned_cols=57 Identities=11% Similarity=0.072 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhcc-ch--HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCC
Q 025425 34 IRRALGMIKEIAVDLEKDN-QS--QMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQP 90 (253)
Q Consensus 34 ~~~~~~~~~~vA~~le~~~-~~--~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~ 90 (253)
+.+|+.-|..+-..|.... .. ...-++..+||+-.-...+-..|..=+..|+..+..
T Consensus 20 ~~~A~~qM~~vI~~Lv~~s~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~~~ 79 (120)
T PF08785_consen 20 FQKAIQQMKNVIEQLVSDSGDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKLLS 79 (120)
T ss_dssp CCHHHHHHHHHHHHHHHCSHCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 4555555555555555532 11 222223333333333333444455556666666544
No 213
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=24.85 E-value=23 Score=20.73 Aligned_cols=10 Identities=50% Similarity=1.315 Sum_probs=8.3
Q ss_pred CCCCCCCCCCCC
Q 025425 199 ARCPVAGCPRKL 210 (253)
Q Consensus 199 ~~CPv~GC~~~l 210 (253)
+.||+ |.+.+
T Consensus 2 v~CPi--C~~~v 11 (26)
T smart00734 2 VQCPV--CFREV 11 (26)
T ss_pred CcCCC--CcCcc
Confidence 57999 98876
No 214
>PHA00733 hypothetical protein
Probab=24.60 E-value=1e+02 Score=24.81 Aligned_cols=23 Identities=22% Similarity=0.623 Sum_probs=13.5
Q ss_pred HHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 188 IQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 188 I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
+..++........|++ |...+..
T Consensus 89 L~~H~r~h~~~~~C~~--CgK~F~~ 111 (128)
T PHA00733 89 LKQHIRYTEHSKVCPV--CGKEFRN 111 (128)
T ss_pred HHHHHhcCCcCccCCC--CCCccCC
Confidence 4444442123578999 9887654
No 215
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=24.32 E-value=49 Score=31.72 Aligned_cols=45 Identities=18% Similarity=0.394 Sum_probs=30.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
+..|-||..- ++--.. .+|||.-|..|-...-.-- ....||. |+.
T Consensus 61 n~~C~ICA~~---~TYs~~-~PC~H~~CH~Ca~RlRALY-~~K~C~~--CrT 105 (493)
T COG5236 61 NMNCQICAGS---TTYSAR-YPCGHQICHACAVRLRALY-MQKGCPL--CRT 105 (493)
T ss_pred cceeEEecCC---ceEEEe-ccCCchHHHHHHHHHHHHH-hccCCCc--ccc
Confidence 4558888863 344444 7999999999876643221 3467999 986
No 216
>PF07361 Cytochrom_B562: Cytochrome b562; InterPro: IPR009155 Cytochrome b562 is a haem-containing protein that is expressed in the periplasm of Escherichia coli. In b-type cytochromes, the haem atom is not covalently attached to the polypeptide. Cytochrome b562 has a four-helical bundle structure that is structurally similar to that found in members of the cytochrome c family (IPR002321 from INTERPRO). Cytochrome b562 has a reduction potential of 167 mV, which sets the energy yield possible in metabolism and is also a key determinant of the rate at which redox reactions proceed [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0042597 periplasmic space; PDB: 4ER9_A 3IQ6_G 2QLA_B 3FOO_A 3M79_C 256B_A 3NMI_F 3HNK_A 3NMK_D 2BC5_A ....
Probab=24.00 E-value=3.4e+02 Score=20.94 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=39.6
Q ss_pred HHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHhHhHHHHH
Q 025425 13 TGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKD------NQSQMVKELEDATIQLMEAFGDCTHHSA 79 (253)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~------~~~~~vk~le~~v~el~~~~~e~~~~~~ 79 (253)
|.-|+.++..+..- +-.+.+.++++.|...|.+.-.. +++..++...+.+..|+..-.......+
T Consensus 7 M~~m~~~~k~~~~a--~~~~e~~~~l~~m~~~a~~ak~~~P~~~~~d~~~~~~Y~~Gl~~li~~id~a~~~~~ 77 (103)
T PF07361_consen 7 MKQMKKNYKQAAKA--DDAAEMKTALDKMRAAAEDAKQGKPPKLEGDSAEVKDYQEGLDKLIDQIDKAEALAE 77 (103)
T ss_dssp HHHHHHHHHHHHHS--SSHHHHHHHHHHHHHHHHHHTTTS-GGGTTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555443 35677888888888888777653 2245666677777776655544444333
No 217
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=23.88 E-value=82 Score=30.02 Aligned_cols=14 Identities=14% Similarity=0.463 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
...||. |+..+.+.
T Consensus 171 vP~C~~--CgG~lRPd 184 (349)
T PTZ00410 171 VPHCST--CGGIVKPD 184 (349)
T ss_pred CCCCCC--CCCccCCc
Confidence 467999 98766544
No 218
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=23.65 E-value=49 Score=20.49 Aligned_cols=8 Identities=38% Similarity=0.808 Sum_probs=5.0
Q ss_pred eeccCCCC
Q 025425 158 ISCPLSGK 165 (253)
Q Consensus 158 ~~CPIt~~ 165 (253)
+.||-|+.
T Consensus 3 ~~CP~C~~ 10 (38)
T TIGR02098 3 IQCPNCKT 10 (38)
T ss_pred EECCCCCC
Confidence 55666664
No 219
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.08 E-value=5.4e+02 Score=22.89 Aligned_cols=44 Identities=11% Similarity=0.143 Sum_probs=33.7
Q ss_pred cccchHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHh
Q 025425 7 SRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEK 50 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~ 50 (253)
++++.=+.++.+.++.....++.+...|+....-|.++..++..
T Consensus 69 ~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~ 112 (264)
T PF06008_consen 69 TKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES 112 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667788888888888888888888888877777777755
No 220
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=23.07 E-value=24 Score=32.68 Aligned_cols=53 Identities=15% Similarity=0.322 Sum_probs=34.4
Q ss_pred eeeccCCCC-CCccccCCccccCCCCcccHHHHHH-HHHhC--CCCC-CCCCCCCCCCCC
Q 025425 157 NISCPLSGK-PITELAEPVRSVECKHIYEKNAIQA-YIKSK--NANA-RCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~-~~~~l~~Pv~s~~CgH~f~k~~I~~-~l~~~--~~~~-~CPv~GC~~~l~ 211 (253)
...|+.|.+ .|+++..=--...||++||..|=.. |+-.. .++. .|+. |=..+.
T Consensus 168 a~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~--CF~el~ 225 (288)
T KOG1729|consen 168 ATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDI--CFEELE 225 (288)
T ss_pred ceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHH--HHHHHh
Confidence 355999998 7766655544568999999987665 33221 1333 6887 865553
No 221
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=22.21 E-value=5.1e+02 Score=22.27 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhc
Q 025425 55 QMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTY 88 (253)
Q Consensus 55 ~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y 88 (253)
..|..|+.....+-.+..+...+..-|+.+.+.|
T Consensus 134 ~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~~y 167 (171)
T PF04799_consen 134 KEIQRLEEIQSKSKTLRNKANWLESELERFQEQY 167 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555555555444544444444455444444
No 222
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.86 E-value=5.2e+02 Score=26.76 Aligned_cols=35 Identities=11% Similarity=0.208 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcC
Q 025425 55 QMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQ 89 (253)
Q Consensus 55 ~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~ 89 (253)
..++++++.-+.+....+++.......+.++....
T Consensus 68 e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls 102 (655)
T KOG3758|consen 68 EFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLS 102 (655)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555555555555544443
No 223
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=21.81 E-value=29 Score=18.75 Aligned_cols=8 Identities=50% Similarity=1.298 Sum_probs=5.6
Q ss_pred eeccCCCC
Q 025425 158 ISCPLSGK 165 (253)
Q Consensus 158 ~~CPIt~~ 165 (253)
+.||+|.+
T Consensus 1 y~C~~C~~ 8 (23)
T PF00096_consen 1 YKCPICGK 8 (23)
T ss_dssp EEETTTTE
T ss_pred CCCCCCCC
Confidence 46777775
No 224
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.80 E-value=30 Score=31.37 Aligned_cols=26 Identities=23% Similarity=0.511 Sum_probs=23.3
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 179 CKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 179 CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
|||+.|..|+...+.+. . +.||. |+.
T Consensus 239 c~htlc~~c~~~~l~~~-~-~~cp~--~~~ 264 (296)
T KOG4185|consen 239 EGHTLCKECIDTILLQA-G-IKCPF--CTW 264 (296)
T ss_pred HHHHHHhcchHHHHHHh-h-hcCCc--ccc
Confidence 99999999999999876 3 89998 876
No 225
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=21.62 E-value=69 Score=30.39 Aligned_cols=32 Identities=25% Similarity=0.648 Sum_probs=20.5
Q ss_pred cCCCCcccHHHHHHHHHhC---CC----CCCCCCCCCCCCCC
Q 025425 177 VECKHIYEKNAIQAYIKSK---NA----NARCPVAGCPRKLQ 211 (253)
Q Consensus 177 ~~CgH~f~k~~I~~~l~~~---~~----~~~CPv~GC~~~l~ 211 (253)
.+|||+-.+.. ..||.+- ++ ...||. |...|.
T Consensus 376 ~PCGHv~sekt-~~YWs~iplPhGT~~f~a~CPF--C~~~L~ 414 (429)
T KOG3842|consen 376 NPCGHVCSEKT-VKYWSQIPLPHGTHAFHAACPF--CATQLA 414 (429)
T ss_pred CCcccccchhh-hhHhhcCcCCCccccccccCcc--hhhhhc
Confidence 58999977665 4566541 11 246999 987664
No 226
>PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=21.61 E-value=83 Score=21.40 Aligned_cols=30 Identities=17% Similarity=0.382 Sum_probs=21.0
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHH
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAY 191 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~ 191 (253)
.|+||++.+..|.. +. ..=| .-|++|+...
T Consensus 1 ~C~iCg~kigl~~~-~k-~~DG-~iC~~C~~Kl 30 (51)
T PF14471_consen 1 KCAICGKKIGLFKR-FK-IKDG-YICKDCLKKL 30 (51)
T ss_pred CCCccccccccccc-ee-ccCc-cchHHHHHHh
Confidence 49999998766554 44 4455 5788887665
No 227
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=21.57 E-value=41 Score=22.78 Aligned_cols=12 Identities=42% Similarity=0.996 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCCCC
Q 025425 200 RCPVAGCPRKLQVS 213 (253)
Q Consensus 200 ~CPv~GC~~~l~~~ 213 (253)
.||+ |...|...
T Consensus 22 ~CPl--C~r~l~~e 33 (54)
T PF04423_consen 22 CCPL--CGRPLDEE 33 (54)
T ss_dssp E-TT--T--EE-HH
T ss_pred cCCC--CCCCCCHH
Confidence 8999 99988644
No 228
>PLN02195 cellulose synthase A
Probab=21.52 E-value=74 Score=34.36 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=34.8
Q ss_pred eccCCCCCCcc--ccCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 159 SCPLSGKPITE--LAEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 159 ~CPIt~~~~~~--l~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.|-||+.-+.+ .-+|. -...||.--||.|. +|=+.- +...||+ |.......+
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCy-eyer~e-g~q~Cpq--Ckt~Yk~~~ 62 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACL-EYEIKE-GRKVCLR--CGGPYDAEN 62 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchh-hhhhhc-CCccCCc--cCCcccccc
Confidence 58888853211 11333 44578999999997 776554 5778999 998777333
No 229
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=21.42 E-value=42 Score=30.44 Aligned_cols=35 Identities=34% Similarity=0.749 Sum_probs=27.6
Q ss_pred cccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 169 ELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 169 ~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
+-.+|+. |+|+.++.|-+.|++.+ . |+.||+..+.
T Consensus 238 ~~~~~~v---~d~IlE~R~~~~~ir~s-q----eq~~~~~~~~ 272 (275)
T COG5627 238 EVVDPYV---CDHILEKREAMKYIRNS-Q----EQIGCNKRLT 272 (275)
T ss_pred eeccchh---hhHHHHHHHHHHHHHhh-h----hhhchhhhhh
Confidence 3456654 99999999999999986 2 7888887553
No 230
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=21.29 E-value=2.2e+02 Score=25.92 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
...||. |+..+.+.
T Consensus 179 iP~C~~--Cgg~lrP~ 192 (285)
T PRK05333 179 VPACPA--CGGILKPD 192 (285)
T ss_pred CCCCCC--CCCcccCC
Confidence 357999 98876644
No 231
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only]
Probab=21.29 E-value=38 Score=29.74 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=7.9
Q ss_pred cceeeccCCC
Q 025425 155 ILNISCPLSG 164 (253)
Q Consensus 155 ~~~~~CPIt~ 164 (253)
.+.+.||.|.
T Consensus 4 ~iy~~Cp~Cg 13 (201)
T COG1326 4 EIYIECPSCG 13 (201)
T ss_pred eEEEECCCCC
Confidence 3578899998
No 232
>PRK15202 type III secretion chaperone protein SigE; Provisional
Probab=21.26 E-value=98 Score=24.73 Aligned_cols=31 Identities=29% Similarity=0.619 Sum_probs=20.4
Q ss_pred CCCCCCCC-----CcceeEe--ccCCccceeeccCCCCC
Q 025425 135 GELMPGEE-----QEDIVMT--STQSNILNISCPLSGKP 166 (253)
Q Consensus 135 g~~~p~d~-----ddDi~i~--~~~~~~~~~~CPIt~~~ 166 (253)
|-+.|+|+ ||||.|- .+ ...+++.||.|-.|
T Consensus 13 Gld~~~depaliidddi~IYfnes-~~~lem~CPf~~LP 50 (117)
T PRK15202 13 GLDAPEDEPALIIDDDIQIYFNES-DHTLEMCCPFMPLP 50 (117)
T ss_pred CCCCCCCCceEEecCCeEEEEccC-CcchhccCCcccCC
Confidence 44555554 6787772 22 35689999999754
No 233
>COG4338 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=33 Score=23.55 Aligned_cols=12 Identities=25% Similarity=0.758 Sum_probs=9.4
Q ss_pred ceeeccCCCCCC
Q 025425 156 LNISCPLSGKPI 167 (253)
Q Consensus 156 ~~~~CPIt~~~~ 167 (253)
..-.||.|++||
T Consensus 11 p~KICpvCqRPF 22 (54)
T COG4338 11 PDKICPVCQRPF 22 (54)
T ss_pred chhhhhhhcCch
Confidence 345799999876
No 234
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=21.07 E-value=1.1e+02 Score=27.65 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQVS 213 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~~ 213 (253)
...||. |+..|.+.
T Consensus 169 ~p~C~~--Cgg~lrP~ 182 (260)
T cd01409 169 VPECER--CGGVLKPD 182 (260)
T ss_pred CCCCCC--CCCEECCC
Confidence 357999 98766554
No 235
>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
Probab=21.00 E-value=43 Score=31.76 Aligned_cols=15 Identities=40% Similarity=1.028 Sum_probs=12.4
Q ss_pred CCCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKLQ 211 (253)
Q Consensus 197 ~~~~CPv~GC~~~l~ 211 (253)
++.+|||.||.+..+
T Consensus 348 KpykCpV~gC~K~Yk 362 (423)
T COG5189 348 KPYKCPVEGCNKKYK 362 (423)
T ss_pred ceecCCCCCchhhhc
Confidence 678999999988654
No 236
>KOG1842 consensus FYVE finger-containing protein [General function prediction only]
Probab=20.89 E-value=28 Score=34.27 Aligned_cols=33 Identities=9% Similarity=0.161 Sum_probs=26.1
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQA 190 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~ 190 (253)
..||+|..+|.+...---..-||-+-|++|..-
T Consensus 181 ~~CP~Ca~~F~l~rRrHHCRLCG~VmC~~C~k~ 213 (505)
T KOG1842|consen 181 QFCPECANSFGLTRRRHHCRLCGRVMCRDCSKF 213 (505)
T ss_pred cccccccchhhhHHHhhhhhhcchHHHHHHHHh
Confidence 569999998876666555567999999999654
No 237
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.89 E-value=4.9e+02 Score=22.88 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=20.4
Q ss_pred cccchHHHHHHHhHhhhccchhhHHHHHHHHHHHHHHH
Q 025425 7 SRHDAVTGRIRNAATTLYNDNNTVIGEIRRALGMIKEI 44 (253)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 44 (253)
++++-.+.-|+++.-..++-+-.+++.-+.+++-+.+.
T Consensus 139 ~~vD~llr~lgg~lh~is~lt~~~vq~yr~aV~kl~d~ 176 (222)
T KOG4514|consen 139 SSVDNLLRNLGGLLHSISSLTADNVQVYRNAVNKLTDT 176 (222)
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555544443
No 238
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=20.77 E-value=33 Score=33.28 Aligned_cols=34 Identities=18% Similarity=0.498 Sum_probs=0.0
Q ss_pred ccCCccccCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCC
Q 025425 170 LAEPVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPR 208 (253)
Q Consensus 170 l~~Pv~s~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~ 208 (253)
-+.|.....|||++=.- .|-... .....||+ |+.
T Consensus 300 ~~qP~VYl~CGHVhG~h---~Wg~~~~~~~~~r~CPl--Cr~ 336 (416)
T PF04710_consen 300 ERQPWVYLNCGHVHGYH---NWGQDSDRDPRSRTCPL--CRQ 336 (416)
T ss_dssp ------------------------------------------
T ss_pred ccCceeeccccceeeec---ccccccccccccccCCC--ccc
Confidence 35666667899997543 222211 13568999 986
No 239
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=20.69 E-value=11 Score=34.32 Aligned_cols=7 Identities=43% Similarity=1.008 Sum_probs=3.3
Q ss_pred eeccCCC
Q 025425 158 ISCPLSG 164 (253)
Q Consensus 158 ~~CPIt~ 164 (253)
-.||+|+
T Consensus 173 g~CPvCG 179 (290)
T PF04216_consen 173 GYCPVCG 179 (290)
T ss_dssp SS-TTT-
T ss_pred CcCCCCC
Confidence 4577777
No 240
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=20.59 E-value=24 Score=29.06 Aligned_cols=13 Identities=38% Similarity=0.925 Sum_probs=10.5
Q ss_pred ccceeeccCCCCC
Q 025425 154 NILNISCPLSGKP 166 (253)
Q Consensus 154 ~~~~~~CPIt~~~ 166 (253)
.-.+..||.|+-|
T Consensus 25 kML~~hCp~Cg~P 37 (131)
T COG1645 25 KMLAKHCPKCGTP 37 (131)
T ss_pred HHHHhhCcccCCc
Confidence 4568899999976
No 241
>PRK01022 hypothetical protein; Provisional
Probab=20.51 E-value=5.3e+02 Score=21.87 Aligned_cols=27 Identities=26% Similarity=0.507 Sum_probs=16.3
Q ss_pred ccCCCCCCCCCCcceeEeccCCccceeeccCCCC
Q 025425 132 HHAGELMPGEEQEDIVMTSTQSNILNISCPLSGK 165 (253)
Q Consensus 132 ~~~g~~~p~d~ddDi~i~~~~~~~~~~~CPIt~~ 165 (253)
|..|-|.||.. .|..-++ .+.|||=-+
T Consensus 121 HPvG~~FPGG~----~V~~~~g---~yYCPVkdk 147 (167)
T PRK01022 121 HPVGTPFPGGF----KVEEKNG---VYYCPVKDK 147 (167)
T ss_pred CCCCCCCCCCe----EEEeECC---EEeCccchh
Confidence 34566678752 3433222 799999875
No 242
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=20.36 E-value=71 Score=27.27 Aligned_cols=10 Identities=30% Similarity=0.687 Sum_probs=6.7
Q ss_pred eeeccCCCCC
Q 025425 157 NISCPLSGKP 166 (253)
Q Consensus 157 ~~~CPIt~~~ 166 (253)
-+.||+|+-+
T Consensus 134 ~~vC~vCGy~ 143 (166)
T COG1592 134 VWVCPVCGYT 143 (166)
T ss_pred EEEcCCCCCc
Confidence 4678887643
No 243
>PF08785 Ku_PK_bind: Ku C terminal domain like; InterPro: IPR014893 The non-homologous end joining (NHEJ) pathway is one method by which double stranded breaks in chromosomal DNA are repaired. Ku is a component of a multi-protein complex that is involved in the NHEJ. Ku has affinity for DNA ends and recruits the DNA-dependent protein kinase catalytic subunit (DNA-PKcs). This domain is found at the C-terminal of Ku which binds to DNA-PKcs []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 1RW2_A 1Q2Z_A 3ISM_C.
Probab=20.33 E-value=2e+02 Score=22.68 Aligned_cols=51 Identities=14% Similarity=0.214 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHH---HHHh---hcCCCCChhhHHHHHHHHH
Q 025425 54 SQMVKELEDATIQLMEAFGDCTHHSAAIQ---SVGN---TYQPGTELTDFKKLLVDED 105 (253)
Q Consensus 54 ~~~vk~le~~v~el~~~~~e~~~~~~al~---~l~~---~y~~~~~~~~f~~~~~~~~ 105 (253)
...+++|...+.+|+.-. .-..+.+|++ .+++ .+.....|.+|.+.+++.+
T Consensus 21 ~~A~~qM~~vI~~Lv~~s-~~~~y~kalecl~~lR~~~i~~~ep~~yN~Fl~~LK~~~ 77 (120)
T PF08785_consen 21 QKAIQQMKNVIEQLVSDS-GDQNYDKALECLRALREECIEEEEPDEYNDFLRKLKKKL 77 (120)
T ss_dssp CHHHHHHHHHHHHHHHCS-HCHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-CcchHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 477889999999999888 6666777764 4444 4444566778888777766
No 244
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=20.20 E-value=69 Score=24.52 Aligned_cols=19 Identities=21% Similarity=0.336 Sum_probs=16.0
Q ss_pred cCCCCcccHHHHHHHHHhC
Q 025425 177 VECKHIYEKNAIQAYIKSK 195 (253)
Q Consensus 177 ~~CgH~f~k~~I~~~l~~~ 195 (253)
.++|+.|++..|+..|++.
T Consensus 12 Ip~G~KYdK~wLl~~iq~~ 30 (88)
T PF09162_consen 12 IPYGKKYDKDWLLNSIQSH 30 (88)
T ss_dssp ETTGGGS-HHHHHHHHHHH
T ss_pred ecCCcccCHHHHHHHHHHH
Confidence 5899999999999999864
No 245
>COG2331 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.06 E-value=31 Score=25.89 Aligned_cols=30 Identities=17% Similarity=0.520 Sum_probs=20.2
Q ss_pred cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC
Q 025425 175 RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKL 210 (253)
Q Consensus 175 ~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l 210 (253)
..+.|||.|+ +++.+... .-..||. |+..+
T Consensus 14 ~c~~cg~~~d---vvq~~~dd-plt~ce~--c~a~~ 43 (82)
T COG2331 14 ECTECGNRFD---VVQAMTDD-PLTTCEE--CGARL 43 (82)
T ss_pred eecccchHHH---HHHhcccC-ccccChh--hChHH
Confidence 4568999985 45555544 4568999 88643
Done!