Query 025425
Match_columns 253
No_of_seqs 196 out of 1174
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025425.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025425hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3htk_C E3 SUMO-protein ligase 100.0 1.1E-30 3.6E-35 233.3 11.9 167 54-230 60-250 (267)
2 2yu4_A E3 SUMO-protein ligase 99.8 6.1E-19 2.1E-23 134.5 6.0 78 153-233 3-84 (94)
3 2kr4_A Ubiquitin conjugation f 99.7 5.8E-17 2E-21 121.5 4.7 67 157-232 14-80 (85)
4 2kre_A Ubiquitin conjugation f 99.6 9E-16 3.1E-20 118.6 5.1 68 157-233 29-96 (100)
5 1wgm_A Ubiquitin conjugation f 99.6 2.1E-15 7.1E-20 116.1 5.5 68 157-233 22-90 (98)
6 1t1h_A Gspef-atpub14, armadill 99.6 2.5E-15 8.5E-20 109.6 4.6 68 157-232 8-75 (78)
7 2f42_A STIP1 homology and U-bo 99.5 2E-14 7E-19 122.0 5.6 68 157-232 106-173 (179)
8 2c2l_A CHIP, carboxy terminus 99.5 2.5E-14 8.5E-19 126.0 5.0 68 157-232 208-275 (281)
9 3ztg_A E3 ubiquitin-protein li 99.5 8.9E-14 3E-18 104.3 6.5 68 157-231 13-82 (92)
10 2y43_A E3 ubiquitin-protein li 99.3 8E-13 2.7E-17 100.6 4.6 71 157-235 22-92 (99)
11 3lrq_A E3 ubiquitin-protein li 99.3 1E-12 3.6E-17 100.6 4.9 74 157-237 22-95 (100)
12 3fl2_A E3 ubiquitin-protein li 99.3 2.3E-12 8E-17 101.9 6.7 66 157-230 52-118 (124)
13 1jm7_A BRCA1, breast cancer ty 99.3 2E-12 6.9E-17 99.8 5.3 68 157-230 21-88 (112)
14 1z6u_A NP95-like ring finger p 99.3 7.2E-12 2.5E-16 103.1 6.6 66 157-230 78-144 (150)
15 2bay_A PRE-mRNA splicing facto 99.2 3.2E-12 1.1E-16 90.2 2.6 56 156-219 2-57 (61)
16 2ckl_A Polycomb group ring fin 99.2 1.6E-11 5.4E-16 94.9 4.7 66 157-230 15-84 (108)
17 1jm7_B BARD1, BRCA1-associated 99.2 9.7E-12 3.3E-16 97.6 3.5 66 157-232 22-87 (117)
18 3hct_A TNF receptor-associated 99.2 1.1E-11 3.6E-16 97.5 3.5 66 156-229 17-82 (118)
19 2ecw_A Tripartite motif-contai 99.2 3.8E-12 1.3E-16 93.1 0.8 60 157-222 19-81 (85)
20 2ecy_A TNF receptor-associated 99.2 3.6E-11 1.2E-15 84.7 5.4 51 157-215 15-65 (66)
21 2ecv_A Tripartite motif-contai 99.2 5.8E-12 2E-16 92.1 1.2 60 157-222 19-81 (85)
22 2egp_A Tripartite motif-contai 99.2 1.2E-12 4.2E-17 95.0 -2.4 60 157-222 12-75 (79)
23 2csy_A Zinc finger protein 183 99.2 1.4E-11 4.9E-16 90.3 3.3 59 157-225 15-73 (81)
24 2ckl_B Ubiquitin ligase protei 99.1 1.9E-11 6.6E-16 101.2 4.0 68 156-230 53-121 (165)
25 2djb_A Polycomb group ring fin 99.1 3.8E-11 1.3E-15 86.1 5.1 55 157-219 15-69 (72)
26 2yur_A Retinoblastoma-binding 99.1 3.8E-11 1.3E-15 86.8 5.0 55 157-218 15-71 (74)
27 2ysl_A Tripartite motif-contai 99.1 3.3E-11 1.1E-15 86.1 4.3 53 157-215 20-72 (73)
28 3i2d_A E3 SUMO-protein ligase 99.1 2.4E-11 8.2E-16 113.1 3.1 78 141-227 236-315 (371)
29 3l11_A E3 ubiquitin-protein li 99.1 2.4E-11 8.2E-16 94.8 1.8 65 157-229 15-86 (115)
30 1g25_A CDK-activating kinase a 99.1 8.9E-11 3.1E-15 82.5 3.7 56 157-218 3-61 (65)
31 2ysj_A Tripartite motif-contai 99.0 1.4E-10 5E-15 80.8 4.6 44 157-206 20-63 (63)
32 1rmd_A RAG1; V(D)J recombinati 99.0 1.8E-10 6.3E-15 89.8 4.5 64 157-228 23-87 (116)
33 3hcs_A TNF receptor-associated 99.0 1.6E-10 5.4E-15 96.0 4.4 66 156-229 17-82 (170)
34 3knv_A TNF receptor-associated 99.0 2.9E-11 1E-15 98.5 -0.3 66 156-229 30-104 (141)
35 4ayc_A E3 ubiquitin-protein li 99.0 1.7E-10 5.9E-15 93.0 3.9 47 157-212 53-99 (138)
36 2ct2_A Tripartite motif protei 99.0 4.4E-10 1.5E-14 82.8 5.1 52 157-214 15-70 (88)
37 3ng2_A RNF4, snurf, ring finge 98.9 3.9E-10 1.3E-14 80.0 3.1 54 157-218 10-69 (71)
38 2ecj_A Tripartite motif-contai 98.9 8.8E-10 3E-14 75.1 4.3 43 157-203 15-57 (58)
39 2d8t_A Dactylidin, ring finger 98.9 2E-10 6.7E-15 82.2 -0.1 49 157-214 15-63 (71)
40 2xeu_A Ring finger protein 4; 98.9 5.4E-10 1.8E-14 77.4 2.0 53 157-217 3-61 (64)
41 4fo9_A E3 SUMO-protein ligase 98.9 1.1E-09 3.7E-14 101.7 4.3 78 141-227 202-281 (360)
42 1e4u_A Transcriptional repress 98.8 3E-09 1E-13 78.3 4.8 53 157-215 11-65 (78)
43 1wim_A KIAA0161 protein; ring 98.8 6.8E-10 2.3E-14 83.7 1.0 56 156-214 4-68 (94)
44 2ect_A Ring finger protein 126 98.8 2E-09 6.7E-14 78.0 3.1 55 157-219 15-71 (78)
45 2ea6_A Ring finger protein 4; 98.8 2.2E-09 7.6E-14 75.4 2.9 47 157-212 15-68 (69)
46 1chc_A Equine herpes virus-1 r 98.7 6.7E-09 2.3E-13 73.1 3.8 47 157-211 5-51 (68)
47 2ecm_A Ring finger and CHY zin 98.7 1.7E-08 5.8E-13 67.9 4.5 47 157-211 5-54 (55)
48 2kiz_A E3 ubiquitin-protein li 98.7 2E-08 6.9E-13 70.9 4.5 50 157-212 14-63 (69)
49 4ap4_A E3 ubiquitin ligase RNF 98.6 6.2E-09 2.1E-13 81.6 1.8 52 157-217 7-65 (133)
50 1bor_A Transcription factor PM 98.6 7E-09 2.4E-13 71.1 1.6 45 157-213 6-50 (56)
51 1x4j_A Ring finger protein 38; 98.6 2.7E-08 9.2E-13 71.5 3.1 49 157-213 23-73 (75)
52 2ep4_A Ring finger protein 24; 98.6 5.2E-08 1.8E-12 69.6 4.6 47 157-211 15-63 (74)
53 1iym_A EL5; ring-H2 finger, ub 98.6 3.5E-08 1.2E-12 66.5 3.2 47 157-211 5-54 (55)
54 2l0b_A E3 ubiquitin-protein li 98.5 4.1E-08 1.4E-12 73.5 3.2 47 157-212 40-89 (91)
55 1v87_A Deltex protein 2; ring- 98.5 8E-08 2.7E-12 74.3 4.7 50 157-211 25-93 (114)
56 2ecn_A Ring finger protein 141 98.5 1.4E-08 4.8E-13 71.9 -0.1 48 157-214 15-62 (70)
57 3m62_A Ubiquitin conjugation f 98.4 9.8E-08 3.3E-12 98.0 4.6 69 157-234 891-960 (968)
58 4ap4_A E3 ubiquitin ligase RNF 98.4 6E-08 2.1E-12 75.9 0.9 52 157-217 72-130 (133)
59 2y1n_A E3 ubiquitin-protein li 98.4 2E-07 6.8E-12 87.5 4.0 49 158-214 333-381 (389)
60 4ic3_A E3 ubiquitin-protein li 98.3 2E-07 6.8E-12 67.3 1.6 42 157-211 24-66 (74)
61 2ecg_A Baculoviral IAP repeat- 98.3 4.7E-07 1.6E-11 65.3 3.4 43 157-212 25-68 (75)
62 2ecl_A Ring-box protein 2; RNF 98.2 3.2E-07 1.1E-11 67.3 1.8 50 157-214 15-78 (81)
63 3dpl_R Ring-box protein 1; ubi 98.0 2.9E-06 9.9E-11 65.8 2.9 47 158-212 38-101 (106)
64 2vje_A E3 ubiquitin-protein li 98.0 3.8E-06 1.3E-10 59.0 3.1 46 157-211 8-56 (64)
65 2vje_B MDM4 protein; proto-onc 98.0 3.5E-06 1.2E-10 58.9 2.8 46 157-211 7-55 (63)
66 2yho_A E3 ubiquitin-protein li 97.8 5E-06 1.7E-10 60.8 0.9 42 157-211 18-60 (79)
67 3t6p_A Baculoviral IAP repeat- 97.7 4.5E-06 1.6E-10 77.2 -0.0 42 157-211 295-337 (345)
68 4a0k_B E3 ubiquitin-protein li 97.7 5.3E-06 1.8E-10 65.5 0.0 47 158-212 49-112 (117)
69 2ea5_A Cell growth regulator w 97.6 3.3E-05 1.1E-09 54.8 2.8 43 157-212 15-58 (68)
70 2d8s_A Cellular modulator of i 97.5 8.7E-05 3E-09 54.5 4.2 52 157-213 15-71 (80)
71 3vk6_A E3 ubiquitin-protein li 97.4 9.9E-05 3.4E-09 56.6 3.5 40 159-203 3-42 (101)
72 2ct0_A Non-SMC element 1 homol 97.0 0.00085 2.9E-08 48.7 4.6 48 158-211 16-63 (74)
73 3k1l_B Fancl; UBC, ring, RWD, 95.6 0.0026 8.8E-08 58.9 0.7 50 157-211 308-372 (381)
74 1vyx_A ORF K3, K3RING; zinc-bi 95.1 0.027 9.3E-07 38.7 4.5 48 158-212 7-59 (60)
75 2jun_A Midline-1; B-BOX, TRIM, 95.0 0.013 4.4E-07 43.7 2.7 35 157-193 3-38 (101)
76 1dvp_A HRS, hepatocyte growth 94.6 0.47 1.6E-05 40.3 11.9 32 157-188 161-192 (220)
77 3nw0_A Non-structural maintena 91.9 0.13 4.5E-06 44.8 4.2 48 158-211 181-228 (238)
78 3zyq_A Hepatocyte growth facto 90.4 1.2 4.2E-05 38.1 8.7 32 158-189 165-196 (226)
79 3okq_A BUD site selection prot 88.7 7.4 0.00025 31.2 11.4 83 16-107 12-94 (141)
80 1joc_A EEA1, early endosomal a 82.0 0.52 1.8E-05 37.0 1.6 31 158-188 70-100 (125)
81 2gmg_A Hypothetical protein PF 80.2 0.65 2.2E-05 35.6 1.5 30 169-208 63-92 (105)
82 2k5c_A Uncharacterized protein 78.8 0.51 1.7E-05 34.8 0.5 66 158-229 9-78 (95)
83 2cs3_A Protein C14ORF4, MY039 78.3 2.1 7.3E-05 31.4 3.7 34 157-194 15-52 (93)
84 1vfy_A Phosphatidylinositol-3- 77.2 0.95 3.2E-05 32.0 1.6 30 159-188 13-42 (73)
85 3knv_A TNF receptor-associated 77.1 0.16 5.3E-06 40.6 -2.9 57 157-216 66-122 (141)
86 1wfk_A Zinc finger, FYVE domai 76.8 0.92 3.1E-05 33.4 1.5 33 156-188 8-40 (88)
87 2dmd_A Zinc finger protein 64, 76.2 2.9 9.8E-05 29.2 4.0 55 155-211 6-75 (96)
88 2yw8_A RUN and FYVE domain-con 75.3 0.99 3.4E-05 32.6 1.3 32 158-189 20-51 (82)
89 1z2q_A LM5-1; membrane protein 74.9 1.1 3.8E-05 32.5 1.4 33 157-189 21-53 (84)
90 3t7l_A Zinc finger FYVE domain 73.9 1.3 4.4E-05 32.6 1.6 32 158-189 21-52 (90)
91 1x4u_A Zinc finger, FYVE domai 71.8 1.4 4.8E-05 31.9 1.3 30 158-187 15-44 (84)
92 2yt9_A Zinc finger-containing 71.4 6.2 0.00021 27.3 4.8 54 156-211 6-76 (95)
93 2dlq_A GLI-kruppel family memb 71.1 5.5 0.00019 28.8 4.6 37 172-210 34-76 (124)
94 2kkx_A Uncharacterized protein 70.2 6.3 0.00022 29.9 4.6 46 157-213 27-80 (102)
95 3mpx_A FYVE, rhogef and PH dom 68.1 1.1 3.6E-05 41.3 0.0 52 158-211 376-431 (434)
96 2kpi_A Uncharacterized protein 67.5 1.7 5.8E-05 29.4 0.9 27 157-183 10-38 (56)
97 3hct_A TNF receptor-associated 66.7 1.7 5.7E-05 32.9 0.9 49 158-218 54-102 (118)
98 2ee8_A Protein ODD-skipped-rel 66.6 12 0.00039 26.5 5.5 54 156-211 16-84 (106)
99 2kmk_A Zinc finger protein GFI 65.8 6.1 0.00021 26.3 3.6 38 172-211 28-68 (82)
100 1x5w_A Zinc finger protein 64, 64.5 8.4 0.00029 25.2 4.1 32 178-211 14-48 (70)
101 3mjh_B Early endosome antigen 64.3 2.2 7.4E-05 26.1 0.9 15 157-174 5-19 (34)
102 1y02_A CARP2, FYVE-ring finger 62.1 2.6 8.9E-05 32.9 1.2 35 158-192 20-54 (120)
103 1ubd_C Protein (YY1 zinc finge 58.5 15 0.00052 26.5 5.0 60 157-216 34-111 (124)
104 1vd4_A Transcription initiatio 58.3 3 0.0001 27.3 0.8 37 173-211 14-50 (62)
105 2ctd_A Zinc finger protein 512 57.2 15 0.00052 26.3 4.6 38 173-212 34-74 (96)
106 2epq_A POZ-, at HOOK-, and zin 55.6 12 0.00042 22.0 3.4 32 172-203 9-43 (45)
107 3pwf_A Rubrerythrin; non heme 54.8 5.2 0.00018 32.8 1.9 9 198-208 153-161 (170)
108 2jny_A Uncharacterized BCR; st 54.5 3.6 0.00012 28.8 0.7 11 157-167 10-20 (67)
109 1yuz_A Nigerythrin; rubrythrin 53.2 4.9 0.00017 33.8 1.5 9 198-208 186-194 (202)
110 2pk7_A Uncharacterized protein 52.7 4.3 0.00015 28.5 0.9 11 157-167 8-18 (69)
111 2jr6_A UPF0434 protein NMA0874 52.6 4.2 0.00014 28.5 0.8 11 157-167 8-18 (68)
112 2hf1_A Tetraacyldisaccharide-1 52.4 4.1 0.00014 28.6 0.7 11 157-167 8-18 (68)
113 1weo_A Cellulose synthase, cat 49.2 48 0.0016 24.6 6.1 50 158-211 17-69 (93)
114 1yc5_A NAD-dependent deacetyla 48.6 5.8 0.0002 34.1 1.3 49 178-229 126-179 (246)
115 2j7j_A Transcription factor II 48.1 12 0.00043 24.8 2.8 10 199-208 32-41 (85)
116 1lko_A Rubrerythrin all-iron(I 47.9 5.3 0.00018 33.2 0.9 9 198-208 171-179 (191)
117 1pft_A TFIIB, PFTFIIBN; N-term 46.9 8.6 0.00029 24.7 1.6 27 157-185 5-36 (50)
118 4gzn_C ZFP-57, zinc finger pro 46.4 12 0.0004 24.9 2.3 39 172-212 3-44 (60)
119 6rxn_A Rubredoxin; electron tr 46.3 4 0.00014 26.5 -0.1 9 198-208 30-38 (46)
120 2eps_A POZ-, at HOOK-, and zin 46.1 33 0.0011 21.1 4.4 36 174-211 13-52 (54)
121 1vq8_Z 50S ribosomal protein L 46.0 5.1 0.00018 29.2 0.4 16 157-174 27-42 (83)
122 2lt7_A Transcriptional regulat 45.1 11 0.00038 28.9 2.3 55 155-211 20-89 (133)
123 2ko5_A Ring finger protein Z; 44.5 6.5 0.00022 29.6 0.8 45 157-211 28-72 (99)
124 2lcq_A Putative toxin VAPC6; P 44.5 4.3 0.00015 32.6 -0.2 27 174-211 133-159 (165)
125 1twf_L ABC10-alpha, DNA-direct 44.0 11 0.00038 26.5 1.9 11 156-166 27-37 (70)
126 2js4_A UPF0434 protein BB2007; 43.1 6.2 0.00021 27.8 0.5 11 157-167 8-18 (70)
127 2zet_C Melanophilin; complex, 42.7 9 0.00031 30.9 1.5 48 157-208 68-116 (153)
128 1wff_A Riken cDNA 2810002D23 p 42.5 12 0.0004 27.5 1.9 28 157-186 25-52 (85)
129 2drp_A Protein (tramtrack DNA- 41.6 16 0.00055 23.3 2.4 24 186-211 24-51 (66)
130 1j8f_A SIRT2, sirtuin 2, isofo 41.2 12 0.00043 33.5 2.3 31 179-212 167-197 (323)
131 1ma3_A SIR2-AF2, transcription 40.7 8.5 0.00029 33.2 1.1 49 178-229 128-182 (253)
132 2jx1_A Myelin transcription fa 40.6 12 0.00042 22.3 1.4 11 199-209 2-12 (31)
133 2lbm_A Transcriptional regulat 40.4 11 0.00039 30.1 1.7 46 157-208 63-116 (142)
134 2d9k_A FLN29 gene product; zin 40.2 8.4 0.00029 26.4 0.8 46 171-218 15-61 (75)
135 2epr_A POZ-, at HOOK-, and zin 39.4 26 0.00089 20.9 3.0 35 172-208 11-48 (48)
136 4ayb_P DNA-directed RNA polyme 39.3 2.4 8.3E-05 27.8 -2.0 26 176-208 6-31 (48)
137 2ytn_A Zinc finger protein 347 39.1 35 0.0012 19.9 3.6 31 173-203 12-45 (46)
138 2gqj_A Zinc finger protein KIA 39.0 9.4 0.00032 27.1 0.9 13 198-212 54-66 (98)
139 1x6e_A Zinc finger protein 24; 38.3 23 0.00079 23.1 2.8 37 173-211 14-53 (72)
140 3glr_A NAD-dependent deacetyla 38.0 9 0.00031 34.0 0.8 32 178-212 144-175 (285)
141 2eop_A Zinc finger protein 268 37.9 42 0.0014 19.4 3.8 31 173-203 12-45 (46)
142 2adr_A ADR1; transcription reg 37.3 28 0.00096 21.6 3.0 35 175-211 4-41 (60)
143 2lce_A B-cell lymphoma 6 prote 36.5 24 0.00082 23.1 2.7 40 156-212 16-57 (74)
144 1bbo_A Human enhancer-binding 36.5 25 0.00085 21.5 2.6 34 176-211 4-40 (57)
145 2epx_A Zinc finger protein 28 36.2 45 0.0015 19.3 3.7 31 173-203 12-46 (47)
146 2i13_A AART; DNA binding, zinc 36.2 28 0.00095 27.3 3.5 12 173-184 105-116 (190)
147 2kw0_A CCMH protein; oxidoredu 36.1 24 0.00083 26.0 2.8 31 198-230 23-54 (90)
148 2eq4_A Zinc finger protein 224 35.7 43 0.0015 19.4 3.6 31 173-203 12-45 (46)
149 2eq0_A Zinc finger protein 347 35.6 40 0.0014 19.6 3.4 32 172-203 11-45 (46)
150 2ema_A Zinc finger protein 347 35.4 39 0.0013 19.7 3.3 31 173-203 12-45 (46)
151 2el4_A Zinc finger protein 268 35.4 40 0.0014 19.6 3.4 31 173-203 12-45 (46)
152 2k5r_A Uncharacterized protein 35.2 8.7 0.0003 28.9 0.2 11 157-167 8-18 (97)
153 2epz_A Zinc finger protein 28 35.0 49 0.0017 19.2 3.8 32 172-203 11-45 (46)
154 1wfh_A Zinc finger (AN1-like) 35.0 18 0.0006 25.2 1.7 28 156-186 14-41 (64)
155 2eoq_A Zinc finger protein 224 34.9 47 0.0016 19.2 3.7 31 173-203 12-45 (46)
156 2ytr_A Zinc finger protein 347 34.8 48 0.0016 19.2 3.7 31 173-203 12-45 (46)
157 1zbd_B Rabphilin-3A; G protein 34.7 11 0.00037 29.8 0.7 31 157-187 55-86 (134)
158 2ytq_A Zinc finger protein 268 34.4 50 0.0017 19.2 3.8 31 173-203 12-45 (46)
159 3ajm_A Programmed cell death p 34.4 1.1E+02 0.0038 25.9 7.0 48 55-108 122-174 (213)
160 2ytk_A Zinc finger protein 347 34.3 41 0.0014 19.6 3.3 31 173-203 12-45 (46)
161 2ytm_A Zinc finger protein 28 34.3 51 0.0017 19.2 3.8 31 173-203 12-45 (46)
162 2elz_A Zinc finger protein 224 34.2 48 0.0017 19.3 3.7 31 173-203 12-45 (46)
163 1wg2_A Zinc finger (AN1-like) 34.1 18 0.00061 25.1 1.7 27 157-186 15-41 (64)
164 2eoe_A Zinc finger protein 347 34.1 39 0.0013 19.6 3.2 31 173-203 12-45 (46)
165 3uk3_C Zinc finger protein 217 33.3 27 0.00093 21.3 2.4 32 178-211 9-43 (57)
166 2ytd_A Zinc finger protein 473 33.0 45 0.0016 19.3 3.4 31 173-203 12-45 (46)
167 2em0_A Zinc finger protein 224 33.0 51 0.0017 19.1 3.6 31 173-203 12-45 (46)
168 2emy_A Zinc finger protein 268 32.9 45 0.0015 19.4 3.3 31 173-203 12-45 (46)
169 2wbt_A B-129; zinc finger; 2.7 32.7 39 0.0013 24.6 3.6 37 173-211 74-111 (129)
170 2ene_A Zinc finger protein 347 32.5 48 0.0017 19.2 3.4 31 173-203 12-45 (46)
171 2eod_A TNF receptor-associated 32.3 20 0.0007 23.1 1.7 39 171-211 8-48 (66)
172 2emh_A Zinc finger protein 484 32.1 44 0.0015 19.4 3.2 31 173-203 12-45 (46)
173 2eov_A Zinc finger protein 484 32.1 58 0.002 18.7 3.8 31 173-203 12-45 (46)
174 1wjp_A Zinc finger protein 295 32.1 28 0.00097 24.5 2.6 54 156-211 15-80 (107)
175 1pxe_A Neural zinc finger tran 31.8 21 0.00072 24.7 1.7 13 197-209 16-28 (63)
176 2ytt_A Zinc finger protein 473 31.7 49 0.0017 19.3 3.3 31 173-203 12-45 (46)
177 1wfl_A Zinc finger protein 216 31.7 20 0.00069 25.6 1.6 27 157-186 25-51 (74)
178 2wbs_A Krueppel-like factor 4; 31.6 47 0.0016 22.1 3.6 53 157-211 5-76 (89)
179 1wfp_A Zinc finger (AN1-like) 31.5 21 0.00073 25.4 1.7 29 155-186 23-51 (74)
180 2ep0_A Zinc finger protein 28 31.4 52 0.0018 19.0 3.4 32 172-203 11-45 (46)
181 1q1a_A HST2 protein; ternary c 31.0 19 0.00063 31.7 1.7 34 178-213 141-176 (289)
182 2emp_A Zinc finger protein 347 31.0 51 0.0017 19.1 3.3 31 173-203 12-45 (46)
183 2emf_A Zinc finger protein 484 30.4 47 0.0016 19.3 3.1 32 172-203 11-45 (46)
184 2jne_A Hypothetical protein YF 30.3 2.1 7.1E-05 32.4 -3.9 42 156-211 31-72 (101)
185 2eml_A Zinc finger protein 28 30.1 55 0.0019 18.9 3.4 31 173-203 12-45 (46)
186 2ep2_A Zinc finger protein 484 29.9 55 0.0019 18.9 3.4 31 173-203 12-45 (46)
187 2em5_A ZFP-95, zinc finger pro 29.7 57 0.0019 18.9 3.4 31 173-203 12-45 (46)
188 2emm_A ZFP-95, zinc finger pro 29.6 56 0.0019 18.8 3.4 30 174-203 13-45 (46)
189 2em9_A Zinc finger protein 224 29.6 57 0.002 18.8 3.4 32 172-203 11-45 (46)
190 2ely_A Zinc finger protein 224 29.6 53 0.0018 19.1 3.2 17 187-203 27-45 (46)
191 2emk_A Zinc finger protein 28 29.4 69 0.0024 18.5 3.8 30 174-203 13-45 (46)
192 2dmi_A Teashirt homolog 3; zin 29.4 79 0.0027 22.2 4.8 9 158-166 51-59 (115)
193 2ytj_A Zinc finger protein 484 29.4 58 0.002 18.8 3.4 31 173-203 12-45 (46)
194 2em7_A Zinc finger protein 224 29.3 51 0.0018 19.1 3.1 31 173-203 12-45 (46)
195 2eme_A Zinc finger protein 473 29.3 56 0.0019 18.8 3.3 31 173-203 12-45 (46)
196 2ysp_A Zinc finger protein 224 28.6 49 0.0017 19.2 3.0 32 172-203 11-45 (46)
197 2v3b_B Rubredoxin 2, rubredoxi 28.5 8.9 0.0003 25.7 -0.7 9 198-208 36-44 (55)
198 2eoo_A ZFP-95, zinc finger pro 28.4 60 0.0021 18.8 3.4 31 173-203 12-45 (46)
199 2em8_A Zinc finger protein 224 28.4 63 0.0022 18.7 3.4 31 173-203 12-45 (46)
200 2yso_A ZFP-95, zinc finger pro 28.0 62 0.0021 18.7 3.3 31 173-203 12-45 (46)
201 2emx_A Zinc finger protein 268 27.9 61 0.0021 18.5 3.3 31 173-203 10-43 (44)
202 2ebt_A Krueppel-like factor 5; 27.8 82 0.0028 21.3 4.5 53 157-211 15-86 (100)
203 2el6_A Zinc finger protein 268 27.7 60 0.0021 18.8 3.3 31 173-203 12-45 (46)
204 1tf6_A Protein (transcription 27.6 69 0.0024 24.9 4.4 35 177-211 110-147 (190)
205 3h0g_L DNA-directed RNA polyme 26.1 40 0.0014 23.2 2.3 12 197-210 37-48 (63)
206 2lv2_A Insulinoma-associated p 26.0 37 0.0013 24.0 2.2 25 186-212 42-68 (85)
207 2d9h_A Zinc finger protein 692 25.8 33 0.0011 22.6 1.9 13 197-211 37-49 (78)
208 2epw_A Zinc finger protein 268 25.7 55 0.0019 18.9 2.8 31 173-203 12-45 (46)
209 2en1_A Zinc finger protein 224 25.7 57 0.0019 18.9 2.8 31 173-203 12-45 (46)
210 1llm_C Chimera of ZIF23-GCN4; 25.5 48 0.0016 22.4 2.8 34 176-211 6-42 (88)
211 2hl7_A Cytochrome C-type bioge 25.4 41 0.0014 24.4 2.4 31 198-230 26-57 (84)
212 2en8_A Zinc finger protein 224 25.1 74 0.0025 18.3 3.3 31 173-203 12-45 (46)
213 2cot_A Zinc finger protein 435 25.0 52 0.0018 21.5 2.8 37 173-211 18-57 (77)
214 2ep3_A Zinc finger protein 484 24.9 81 0.0028 18.1 3.5 31 173-203 12-45 (46)
215 2ej4_A Zinc finger protein ZIC 24.7 1.1E+02 0.0039 20.4 4.7 49 157-211 13-73 (95)
216 2enc_A Zinc finger protein 224 24.5 76 0.0026 18.3 3.3 31 173-203 12-45 (46)
217 1lv3_A Hypothetical protein YA 24.2 17 0.00059 25.5 0.1 12 156-167 8-19 (68)
218 1dx8_A Rubredoxin; electron tr 24.1 11 0.00038 26.5 -0.9 9 198-208 40-48 (70)
219 2ct7_A Ring finger protein 31; 24.0 20 0.00068 25.6 0.5 29 157-187 24-57 (86)
220 2yu8_A Zinc finger protein 347 23.9 50 0.0017 19.1 2.3 7 197-203 39-45 (46)
221 2en6_A Zinc finger protein 268 23.3 69 0.0024 18.4 2.9 31 173-203 12-45 (46)
222 1wil_A KIAA1045 protein; ring 23.2 94 0.0032 22.8 3.9 48 157-208 15-75 (89)
223 1q14_A HST2 protein; histone d 22.6 27 0.00092 31.9 1.2 34 178-213 149-184 (361)
224 2jyd_A F5 domain of myelin tra 22.6 36 0.0012 22.0 1.5 13 197-209 8-20 (46)
225 2pv0_B DNA (cytosine-5)-methyl 22.6 77 0.0026 29.3 4.3 67 157-229 93-168 (386)
226 2ct1_A Transcriptional repress 22.6 48 0.0016 21.7 2.2 33 177-211 19-56 (77)
227 2enf_A Zinc finger protein 347 22.5 1.1E+02 0.0038 17.5 3.8 31 173-203 12-45 (46)
228 2em2_A Zinc finger protein 28 22.2 92 0.0032 17.9 3.4 31 173-203 12-45 (46)
229 2jrp_A Putative cytoplasmic pr 21.9 31 0.001 25.0 1.1 12 200-213 53-64 (81)
230 1x3c_A Zinc finger protein 292 21.8 49 0.0017 23.5 2.1 32 157-192 15-49 (73)
231 1x6h_A Transcriptional repress 21.8 52 0.0018 21.7 2.3 9 157-165 15-23 (86)
232 2rpc_A Zinc finger protein ZIC 21.7 2.2E+02 0.0074 20.9 6.2 34 177-210 66-102 (155)
233 2em4_A Zinc finger protein 28 21.4 93 0.0032 17.9 3.2 32 172-203 11-45 (46)
234 2ent_A Krueppel-like factor 15 21.1 95 0.0033 17.9 3.3 32 172-203 11-47 (48)
235 2epu_A Zinc finger protein 32; 21.1 82 0.0028 18.1 2.9 32 172-203 11-45 (45)
236 2en9_A Zinc finger protein 28 20.4 1.2E+02 0.0042 17.3 3.6 31 173-203 12-45 (46)
237 2w83_C C-JUN-amino-terminal ki 20.2 2.4E+02 0.0083 20.0 8.1 63 16-90 7-69 (77)
238 1m3v_A FLIN4, fusion of the LI 20.1 57 0.002 24.3 2.4 52 158-215 33-84 (122)
239 2eon_A ZFP-95, zinc finger pro 20.1 1.1E+02 0.0038 17.6 3.4 31 173-203 12-45 (46)
240 2eor_A Zinc finger protein 224 20.0 1E+02 0.0035 17.6 3.2 31 173-203 12-45 (46)
241 1t3j_A Mitofusin 1; coiled coi 20.0 2.7E+02 0.0093 20.6 6.3 32 56-87 62-93 (96)
242 2ytp_A Zinc finger protein 484 20.0 1E+02 0.0036 17.7 3.3 32 172-203 11-45 (46)
No 1
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-30 Score=233.30 Aligned_cols=167 Identities=14% Similarity=0.371 Sum_probs=139.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCCC----C---------------ChhhHHHHHHHHHhhhhcCCCC
Q 025425 54 SQMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQPG----T---------------ELTDFKKLLVDEDAKSRAASSS 114 (253)
Q Consensus 54 ~~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~~----~---------------~~~~f~~~~~~~~~~~~~~~~~ 114 (253)
.+.|++|.+.+++|+.+.++...+..+++.+++.|... + ..|++.++|.+.. ...+..
T Consensus 60 ~~~v~~l~~~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d~~~~~~~~twd~y~~~e~~ap~l~~~~~~~~---~~~~~~ 136 (267)
T 3htk_C 60 EEQVADITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSDACPQIDLSTWDKYRTGELTAPKLSELYLNMP---TPEPAT 136 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHTSSCCCCHHHHHHTCC---CCSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHhcCCcCCchHHHHHHhcc---ccCccc
Confidence 69999999999999999999999999999999977641 1 1245666655321 112233
Q ss_pred CCCCCccc-cchHHHHhhccCCCCCCC----CCCcceeEeccCCccceeeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 115 VPPNDPLH-KFREAVWNVHHAGELMPG----EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 115 ~~~~~~~~-~F~~~i~~~~~~g~~~p~----d~ddDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
...++++| .|+..+|.+++|+.|+|+ ++||||+|++ ...+++||||+. +|++||+++.|||+|||.||.
T Consensus 137 ~~~~~~~~~~lk~~~~i~~~P~~~lPd~~~~~dDDDI~v~~---~~~el~CPIcl~---~f~DPVts~~CGHsFcR~cI~ 210 (267)
T 3htk_C 137 MVNNTDTLKILKVLPYIWNDPTCVIPDLQNPADEDDLQIEG---GKIELTCPITCK---PYEAPLISRKCNHVFDRDGIQ 210 (267)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTBCCCCCSSTTCSSCCCCCS---SBCCSBCTTTSS---BCSSEEEESSSCCEEEHHHHH
T ss_pred ccccchHHHHHHHccccccCCCCCCCCCCCCCCCccceecC---CceeeECcCccC---cccCCeeeCCCCCcccHHHHH
Confidence 35578899 999999999999999986 5788999985 467999999995 789999988999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 190 AYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 190 ~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
.||+.+ +.+.||++||++.+...+|++|..|.++|+.+++
T Consensus 211 ~~~~~~-~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~ 250 (267)
T 3htk_C 211 NYLQGY-TTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM 250 (267)
T ss_dssp HHSTTC-SCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred HHHHhC-CCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence 999875 5678999999999999999999999999988765
No 2
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=6.1e-19 Score=134.55 Aligned_cols=78 Identities=29% Similarity=0.627 Sum_probs=67.2
Q ss_pred CccceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCCC-CCCCCCccCHHHHHHHHHH
Q 025425 153 SNILNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRK-LQVSKVVCDSLLLVDIDEM 228 (253)
Q Consensus 153 ~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~~-l~~~~L~~D~~l~~~I~~~ 228 (253)
+....|.||||+. +|++||+...|||+||+.||..||..+ ++...||++||++. +...+|++|..|++.|+.+
T Consensus 3 ~~~~~~~CPI~~~---~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 3 SGSSGFTCPITKE---EMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENH 79 (94)
T ss_dssp SCSSCCBCTTTCS---BCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHH
T ss_pred CCCcEeECcCcCc---hhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHH
Confidence 3456899999995 789999944699999999999999764 24578999999998 9999999999999999999
Q ss_pred HHcCc
Q 025425 229 RRTSK 233 (253)
Q Consensus 229 ~~~~~ 233 (253)
++...
T Consensus 80 ~~~~~ 84 (94)
T 2yu4_A 80 NKKRH 84 (94)
T ss_dssp HTTCC
T ss_pred HHHhc
Confidence 97433
No 3
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.65 E-value=5.8e-17 Score=121.52 Aligned_cols=67 Identities=18% Similarity=0.210 Sum_probs=60.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
.|.||||+. +|++||. ..|||+||+.||..||..+ ..||+ |+..++..+|.+|..|++.|+.|+..+
T Consensus 14 ~~~CpI~~~---~m~dPV~-~~cGhtf~r~~I~~~l~~~---~~cP~--~~~~l~~~~l~pn~~L~~~i~~~~~~~ 80 (85)
T 2kr4_A 14 EFRDPLMDT---LMTDPVR-LPSGTVMDRSIILRHLLNS---PTDPF--NRQMLTESMLEPVPELKEQIQAWMREK 80 (85)
T ss_dssp TTBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHHC---SBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHH
T ss_pred heECcccCc---hhcCCeE-CCCCCEECHHHHHHHHhcC---CCCCC--CcCCCChHhcchHHHHHHHHHHHHHHh
Confidence 799999995 7899999 6799999999999999864 58999 999999999999999999999998643
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.58 E-value=9e-16 Score=118.58 Aligned_cols=68 Identities=19% Similarity=0.226 Sum_probs=61.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 233 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~ 233 (253)
.|.||||+. +|++||. ..|||+||+.||..||..+ ..||+ |+..++..+|.+|..|+..|+.|+..++
T Consensus 29 ~~~CpI~~~---~m~dPV~-~~cGhtf~r~~I~~~l~~~---~~cP~--~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 29 EFRDPLMDT---LMTDPVR-LPSGTIMDRSIILRHLLNS---PTDPF--NRQTLTESMLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp TTBCTTTCS---BCSSEEE-ETTTEEEEHHHHHHHTTSC---SBCSS--SCCBCCTTSSEECHHHHHHHHHHHHTTT
T ss_pred hhCCcCccC---cccCCeE-CCCCCEEchHHHHHHHHcC---CCCCC--CCCCCChhhceECHHHHHHHHHHHHHhh
Confidence 799999995 7899999 6799999999999999853 68999 9999999999999999999999997554
No 5
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.56 E-value=2.1e-15 Score=116.13 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=62.1
Q ss_pred eeeccCCCCCCccccCCccccCCC-CcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECK-HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSK 233 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~Cg-H~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~ 233 (253)
.|.||||+. +|++||. ..|| |+||+.||..||..+ ..||+ |+..+...+|.+|..|++.|+.|+..++
T Consensus 22 ~~~CpI~~~---~m~dPV~-~~cG~htf~r~cI~~~l~~~---~~cP~--~~~~l~~~~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 22 EFLDPIMST---LMCDPVV-LPSSRVTVDRSTIARHLLSD---QTDPF--NRSPLTMDQIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp TTBCTTTCS---BCSSEEE-CTTTCCEEEHHHHHHHTTTS---CBCTT--TCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred hcCCcCccc---cccCCeE-CCCCCeEECHHHHHHHHHhC---CCCCC--CCCCCChhhceEcHHHHHHHHHHHHHcc
Confidence 799999995 7899999 7899 999999999999864 58999 9999999999999999999999987554
No 6
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.55 E-value=2.5e-15 Score=109.56 Aligned_cols=68 Identities=22% Similarity=0.396 Sum_probs=61.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
.+.||||+. +|.+||. +.|||+||+.||..|+..+ ...||+ |+..+...+|.+|..|+..|+.|+..+
T Consensus 8 ~~~C~IC~~---~~~~Pv~-~~CgH~fc~~Ci~~~~~~~--~~~CP~--C~~~~~~~~l~~n~~l~~~i~~~~~~~ 75 (78)
T 1t1h_A 8 YFRCPISLE---LMKDPVI-VSTGQTYERSSIQKWLDAG--HKTCPK--SQETLLHAGLTPNYVLKSLIALWCESN 75 (78)
T ss_dssp SSSCTTTSC---CCSSEEE-ETTTEEEEHHHHHHHHTTT--CCBCTT--TCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred cCCCCCccc---cccCCEE-cCCCCeecHHHHHHHHHHC--cCCCCC--CcCCCChhhCccCHHHHHHHHHHHHHc
Confidence 689999996 6799999 7899999999999999753 578999 999999999999999999999998744
No 7
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.48 E-value=2e-14 Score=122.01 Aligned_cols=68 Identities=15% Similarity=0.192 Sum_probs=61.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
.|.||||+. +|++||. .+|||+||+.||..||..+ +. .||+ |+..++..+|.||..|+..|..|+..+
T Consensus 106 ~f~CPI~~e---lm~DPV~-~~~Ghtfer~~I~~~l~~~-~~-tcP~--t~~~l~~~~L~pN~~Lk~~Ie~~~~~~ 173 (179)
T 2f42_A 106 YLCGKISFE---LMREPCI-TPSGITYDRKDIEEHLQRV-GH-FDPV--TRSPLTQDQLIPNLAMKEVIDAFIQEN 173 (179)
T ss_dssp GGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHHT-CS-BCTT--TCCBCCGGGCEECHHHHHHHHHHHHHC
T ss_pred hhcccCccc---cCCCCeE-CCCCCEECHHHHHHHHHhC-CC-CCCC--CcCCCChhhCcchHHHHHHHHHHHHHC
Confidence 799999995 7899999 6999999999999999875 23 6999 999999999999999999999998744
No 8
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.47 E-value=2.5e-14 Score=126.05 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=61.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
.|.||||+. +|++||+ +.|||+||+.||..|+..+ ...||+ |+..++..+|.||..|+..|+.|+..+
T Consensus 208 ~~~c~i~~~---~~~dPv~-~~~gh~f~~~~i~~~~~~~--~~~cP~--~~~~~~~~~l~~n~~l~~~i~~~~~~~ 275 (281)
T 2c2l_A 208 YLCGKISFE---LMREPCI-TPSGITYDRKDIEEHLQRV--GHFNPV--TRSPLTQEQLIPNLAMKEVIDAFISEN 275 (281)
T ss_dssp TTBCTTTCS---BCSSEEE-CSSCCEEETTHHHHHHHHT--CSSCTT--TCCCCCGGGCEECHHHHHHHHHHHTTC
T ss_pred ccCCcCcCC---HhcCCeE-CCCCCEECHHHHHHHHHHC--CCCCcC--CCCCCchhcCcccHHHHHHHHHHHHHC
Confidence 689999995 7899999 7899999999999999875 234999 999999999999999999999999744
No 9
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.45 E-value=8.9e-14 Score=104.31 Aligned_cols=68 Identities=13% Similarity=0.435 Sum_probs=60.7
Q ss_pred eeeccCCCCCCccccCCccccC-CCCcccHHHHHHHHHhCCCCCCCCCCCCCCCC-CCCCCccCHHHHHHHHHHHHc
Q 025425 157 NISCPLSGKPITELAEPVRSVE-CKHIYEKNAIQAYIKSKNANARCPVAGCPRKL-QVSKVVCDSLLLVDIDEMRRT 231 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~-CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l-~~~~L~~D~~l~~~I~~~~~~ 231 (253)
.+.||||+. +|.+||. .. |||+||+.||..|+..+ +...||+ |+..+ ...+|.+|..|...|+.++..
T Consensus 13 ~~~C~IC~~---~~~~p~~-~~~CgH~fC~~Ci~~~~~~~-~~~~CP~--Cr~~~~~~~~~~~n~~l~~~i~~~~~~ 82 (92)
T 3ztg_A 13 ELLCLICKD---IMTDAVV-IPCCGNSYCDECIRTALLES-DEHTCPT--CHQNDVSPDALIANKFLRQAVNNFKNE 82 (92)
T ss_dssp TTEETTTTE---ECSSCEE-CTTTCCEECHHHHHHHHHHC-TTCCCTT--TCCSSCCTTSCEECHHHHHHHHHHHHH
T ss_pred CCCCCCCCh---hhcCceE-CCCCCCHHHHHHHHHHHHhc-CCCcCcC--CCCcCCCccccCcCHHHHHHHHHHHHH
Confidence 689999995 7899998 67 99999999999999875 4579999 99987 688999999999999999873
No 10
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.33 E-value=8e-13 Score=100.59 Aligned_cols=71 Identities=14% Similarity=0.300 Sum_probs=62.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCccc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKET 235 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~~~ 235 (253)
.+.||||+. .|.+||....|||+||+.||..|+..+ ..||+ |+..+...+|.+|..|...|+.++..+.+.
T Consensus 22 ~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~--Cr~~~~~~~l~~n~~l~~~i~~~~~~~~~~ 92 (99)
T 2y43_A 22 LLRCGICFE---YFNIAMIIPQCSHNYCSLCIRKFLSYK---TQCPT--CCVTVTEPDLKNNRILDELVKSLNFARNHL 92 (99)
T ss_dssp HTBCTTTCS---BCSSEEECTTTCCEEEHHHHHHHHTTC---CBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHHHTC
T ss_pred CCCcccCCh---hhCCcCEECCCCCHhhHHHHHHHHHCC---CCCCC--CCCcCChhhCCcCHHHHHHHHHHHHHHHHH
Confidence 588999995 679999845899999999999999854 68999 999999999999999999999998755443
No 11
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.32 E-value=1e-12 Score=100.62 Aligned_cols=74 Identities=15% Similarity=0.277 Sum_probs=62.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCcccc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKETA 236 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~~~~ 236 (253)
.+.||||+. .|.+||....|||+||+.||..|+..+ ...||+ |+..+...+|.++..+...++.+.+......
T Consensus 22 ~~~C~IC~~---~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~l~~~~~~~~i~~~~~~l~~~~~ 94 (100)
T 3lrq_A 22 VFRCFICME---KLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPH--CRAPLQLRELVNCRWAEEVTQQLDTLQLCSL 94 (100)
T ss_dssp HTBCTTTCS---BCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTT--TCCBCCGGGCEECTTHHHHHHHHHHHCC---
T ss_pred CCCCccCCc---cccCccccCCCCChhhHHHHHHHHHHC--cCCCCC--CCCcCCHHHhHhhHHHHHHHHHHHHHHHHHh
Confidence 688999996 679999867999999999999999976 368999 9999999999999999888888877555443
Q ss_pred c
Q 025425 237 R 237 (253)
Q Consensus 237 ~ 237 (253)
+
T Consensus 95 ~ 95 (100)
T 3lrq_A 95 T 95 (100)
T ss_dssp -
T ss_pred h
Confidence 3
No 12
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=101.93 Aligned_cols=66 Identities=15% Similarity=0.346 Sum_probs=58.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC-CCCccCHHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV-SKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~-~~L~~D~~l~~~I~~~~~ 230 (253)
.+.||||+. .|.+||. +.|||+||+.||..|+..+ ...||+ |+..+.. .+|.+|..|...|+.+..
T Consensus 52 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~n~~l~~~i~~~~p 118 (124)
T 3fl2_A 52 TFQCICCQE---LVFRPIT-TVCQHNVCKDCLDRSFRAQ--VFSCPA--CRYDLGRSYAMQVNQPLQTVLNQLFP 118 (124)
T ss_dssp HTBCTTTSS---BCSSEEE-CTTSCEEEHHHHHHHHHTT--CCBCTT--TCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred CCCCCcCCh---HHcCcEE-eeCCCcccHHHHHHHHhHC--cCCCCC--CCccCCCCCCCCCCHHHHHHHHHHcc
Confidence 578999995 7799998 7999999999999999853 568999 9999987 889999999999988764
No 13
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.29 E-value=2e-12 Score=99.82 Aligned_cols=68 Identities=21% Similarity=0.526 Sum_probs=59.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
.+.||||+. .+.+|+. +.|||+||+.||..|+..+.+...||+ |+..+...++.++..+...++.++.
T Consensus 21 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 21 ILECPICLE---LIKEPVS-TKCDHIFCKFCMLKLLNQKKGPSQCPL--CKNDITKRSLQESTRFSQLVEELLK 88 (112)
T ss_dssp HTSCSSSCC---CCSSCCB-CTTSCCCCSHHHHHHHHSSSSSCCCTT--TSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred CCCCcccCh---hhcCeEE-CCCCCHHHHHHHHHHHHhCCCCCCCcC--CCCcCCHhhcCccHHHHHHHHHHHH
Confidence 578999996 6799999 799999999999999987545578999 9999999999999888777777765
No 14
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.25 E-value=7.2e-12 Score=103.06 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=59.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC-CCccCHHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS-KVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~-~L~~D~~l~~~I~~~~~ 230 (253)
.+.||||+. .|.+||. +.|||+||+.||..|+..+ ...||+ |+..+... .|.+|..|...|..+..
T Consensus 78 ~~~C~IC~~---~~~~pv~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 78 SFMCVCCQE---LVYQPVT-TECFHNVCKDCLQRSFKAQ--VFSCPA--CRHDLGQNYIMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HTBCTTTSS---BCSSEEE-CTTSCEEEHHHHHHHHHTT--CCBCTT--TCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred CCEeecCCh---hhcCCEE-cCCCCchhHHHHHHHHHhC--CCcCCC--CCccCCCCCCCCCCHHHHHHHHHHhh
Confidence 588999995 6799999 8999999999999999864 568999 99999988 89999999999998864
No 15
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.22 E-value=3.2e-12 Score=90.16 Aligned_cols=56 Identities=27% Similarity=0.497 Sum_probs=46.8
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 219 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~ 219 (253)
.+|.||||++ .|++||.+..|||+|||.||..||..+ + .||+ ++..|+..+|.+..
T Consensus 2 ~~~~CpIs~~---~m~dPV~~~~sG~~yer~~I~~~l~~~-~--~cP~--t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 2 SHMLCAISGK---VPRRPVLSPKSRTIFEKSLLEQYVKDT-G--NDPI--TNEPLSIEEIVEIV 57 (61)
T ss_dssp --CCCTTTCS---CCSSEEEETTTTEEEEHHHHHHHHHHH-S--BCTT--TCCBCCGGGCEECC
T ss_pred CeEEecCCCC---CCCCCEEeCCCCcEEcHHHHHHHHHhC-C--CCcC--CcCCCChhhcEECc
Confidence 3799999996 679999955899999999999999876 2 4999 66889989988764
No 16
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.17 E-value=1.6e-11 Score=94.88 Aligned_cols=66 Identities=21% Similarity=0.501 Sum_probs=57.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC----CCccCHHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS----KVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~----~L~~D~~l~~~I~~~~~ 230 (253)
.+.||||+. .|.+||....|||+||+.||..|+..+ ..||+ |+..+... +|.+|..|...|..+..
T Consensus 15 ~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 15 HLMCVLCGG---YFIDATTIIECLHSFCKTCIVRYLETS---KYCPI--CDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp GTBCTTTSS---BCSSEEEETTTCCEEEHHHHHHHHTSC---SBCTT--TCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCCccCCh---HHhCcCEeCCCCChhhHHHHHHHHHhC---CcCcC--CCccccccCcccccCcCHHHHHHHHHHhh
Confidence 689999995 779999945999999999999999864 78999 99988876 78999999988887754
No 17
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=9.7e-12 Score=97.59 Aligned_cols=66 Identities=24% Similarity=0.394 Sum_probs=58.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTS 232 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~ 232 (253)
.+.||||+. .|.+||....|||+||+.||..|+. ..||+ |+..+...+|.++..|...|..++..+
T Consensus 22 ~~~C~IC~~---~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~--Cr~~~~~~~~~~n~~l~~l~~~~~~~~ 87 (117)
T 1jm7_B 22 LLRCSRCTN---ILREPVCLGGCEHIFCSNCVSDCIG-----TGCPV--CYTPAWIQDLKINRQLDSMIQLCSKLR 87 (117)
T ss_dssp TTSCSSSCS---CCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSS--SCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCh---HhhCccEeCCCCCHHHHHHHHHHhc-----CCCcC--CCCcCccccccccHHHHHHHHHHHHHH
Confidence 689999995 6799999339999999999999976 57999 999999999999999999988887644
No 18
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.17 E-value=1.1e-11 Score=97.51 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=58.6
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~ 229 (253)
..+.||||+. .|.+||. +.|||+||+.||..|+..+ ...||+ |+..+...++.++..+.+.|..++
T Consensus 17 ~~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~l~~~i~~l~ 82 (118)
T 3hct_A 17 SKYECPICLM---ALREAVQ-TPCGHRFCKACIIKSIRDA--GHKCPV--DNEILLENQLFPDNFAKREILSLM 82 (118)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHHH--CSBCTT--TCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCcCCh---hhcCeEE-CCcCChhhHHHHHHHHhhC--CCCCCC--CCCCcCHHhcccCHHHHHHHccce
Confidence 3689999995 6799998 7999999999999999875 348999 999999999999999998888765
No 19
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.16 E-value=3.8e-12 Score=93.05 Aligned_cols=60 Identities=23% Similarity=0.558 Sum_probs=51.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC---CCCCCCCCCCCCCCCCCCCCccCHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK---NANARCPVAGCPRKLQVSKVVCDSLLL 222 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~---~~~~~CPv~GC~~~l~~~~L~~D~~l~ 222 (253)
.+.||||+. .|.+|+. ..|||+||+.||..|+... .+...||+ |+..+...+|.+|..|.
T Consensus 19 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecw_A 19 EVTCPICLE---LLKEPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPV--CRVPYPFGNLKPNLHVA 81 (85)
T ss_dssp TTSCTTTCS---CCSSCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTT--TCCCCCTTCCEECSCCC
T ss_pred CCCCcCCCh---hhCccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCC--CCCcCCHHhCCcCHHHH
Confidence 688999996 6799998 7899999999999999873 13678999 99999999999886554
No 20
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=84.74 Aligned_cols=51 Identities=24% Similarity=0.538 Sum_probs=45.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
.+.||||+. .+.+|+. +.|||+||+.||..|+... ...||+ |+..+...++
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~i 65 (66)
T 2ecy_A 15 KYKCEKCHL---VLCSPKQ-TECGHRFCESCMAALLSSS--SPKCTA--CQESIVKDKV 65 (66)
T ss_dssp CEECTTTCC---EESSCCC-CSSSCCCCHHHHHHHHTTS--SCCCTT--TCCCCCTTTC
T ss_pred CCCCCCCCh---HhcCeeE-CCCCCHHHHHHHHHHHHhC--cCCCCC--CCcCCChhhc
Confidence 689999995 6799999 8999999999999999643 578999 9999988776
No 21
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=5.8e-12 Score=92.08 Aligned_cols=60 Identities=22% Similarity=0.555 Sum_probs=51.5
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHh---CCCCCCCCCCCCCCCCCCCCCccCHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS---KNANARCPVAGCPRKLQVSKVVCDSLLL 222 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~---~~~~~~CPv~GC~~~l~~~~L~~D~~l~ 222 (253)
.+.||||.. .+.+|+. ..|||+||+.||..|+.. ..+...||+ |+..+...++.+|..|.
T Consensus 19 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~--Cr~~~~~~~~~~n~~l~ 81 (85)
T 2ecv_A 19 EVTCPICLE---LLTQPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPV--CRISYQPENIRPNRHVA 81 (85)
T ss_dssp CCCCTTTCS---CCSSCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTT--TCCSSCSSSCCCSCCCC
T ss_pred CCCCCCCCc---ccCCcee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCC--CCCccCHHhcCccHHHH
Confidence 688999996 6799998 799999999999999976 224679999 99999999998886554
No 22
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.15 E-value=1.2e-12 Score=94.99 Aligned_cols=60 Identities=23% Similarity=0.546 Sum_probs=51.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC----CCCCCCCCCCCCCCCCCCCCccCHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK----NANARCPVAGCPRKLQVSKVVCDSLLL 222 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~----~~~~~CPv~GC~~~l~~~~L~~D~~l~ 222 (253)
.+.||||+. .|.+|+. ..|||+||+.||..|+... .+...||+ |+..+...+|.+|..|.
T Consensus 12 ~~~C~IC~~---~~~~p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~--Cr~~~~~~~l~~n~~l~ 75 (79)
T 2egp_A 12 EVTCPICLE---LLTEPLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPV--CGISYSFEHLQANQHLA 75 (79)
T ss_dssp CCEETTTTE---ECSSCCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSS--SCCCCCSSGGGTCSSSC
T ss_pred CCCCcCCCc---ccCCeeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCC--CCCcCCHhhCCcCHHHH
Confidence 688999995 6799999 7999999999999999763 23678999 99999998888886554
No 23
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.15 E-value=1.4e-11 Score=90.28 Aligned_cols=59 Identities=15% Similarity=0.422 Sum_probs=49.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDI 225 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I 225 (253)
.+.||||+. .|.+||. +.|||+||+.||..|+... ..||+ |+..+. ..+.++..|..++
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~---~~CP~--Cr~~~~-~~~~~~~~l~~~~ 73 (81)
T 2csy_A 15 PFRCFICRQ---AFQNPVV-TKCRHYFCESCALEHFRAT---PRCYI--CDQPTG-GIFNPAKELMAKL 73 (81)
T ss_dssp CSBCSSSCS---BCCSEEE-CTTSCEEEHHHHHHHHHHC---SBCSS--SCCBCC-SCCEECHHHHHHH
T ss_pred CCCCcCCCc---hhcCeeE-ccCCCHhHHHHHHHHHHCC---CcCCC--cCcccc-ccCCcHHHHHHHH
Confidence 688999995 6799998 8999999999999999864 68999 999886 7788885544333
No 24
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.14 E-value=1.9e-11 Score=101.17 Aligned_cols=68 Identities=24% Similarity=0.436 Sum_probs=58.2
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC-CCCCccCHHHHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ-VSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~-~~~L~~D~~l~~~I~~~~~ 230 (253)
..+.||||+. .|.+||....|||+||+.||..|+..+ ...||+ |+..+. ...|.+|..|...|..++.
T Consensus 53 ~~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 53 SELMCPICLD---MLKNTMTTKECLHRFCADCIITALRSG--NKECPT--CRKKLVSKRSLRPDPNFDALISKIYP 121 (165)
T ss_dssp HHHBCTTTSS---BCSSEEEETTTCCEEEHHHHHHHHHTT--CCBCTT--TCCBCCSGGGEEECHHHHHHHHHHC-
T ss_pred CCCCCcccCh---HhhCcCEeCCCCChhHHHHHHHHHHhC--cCCCCC--CCCcCCCcccCCcCHHHHHHHHHHHc
Confidence 4689999995 679999855999999999999999863 578999 999884 5679999999999988865
No 25
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=3.8e-11 Score=86.14 Aligned_cols=55 Identities=22% Similarity=0.425 Sum_probs=47.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 219 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~ 219 (253)
.+.||||+. .|.+|+..+.|||+||+.||..|++.+ ..||+ |+..+...++..++
T Consensus 15 ~~~C~IC~~---~~~~p~~~~~CgH~fC~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 15 YILCSICKG---YLIDATTITECLHTFCKSCIVRHFYYS---NRCPK--CNIVVHQTQPLSGP 69 (72)
T ss_dssp GGSCTTTSS---CCSSCEECSSSCCEECHHHHHHHHHHC---SSCTT--TCCCCCSSCSCCCC
T ss_pred CCCCCCCCh---HHHCcCEECCCCCHHHHHHHHHHHHcC---CcCCC--cCcccCcccccccC
Confidence 688999995 679999855999999999999999864 68999 99999988887653
No 26
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.14 E-value=3.8e-11 Score=86.80 Aligned_cols=55 Identities=15% Similarity=0.392 Sum_probs=45.2
Q ss_pred eeeccCCCCCCccccCCccccC-CCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC-CCCCccC
Q 025425 157 NISCPLSGKPITELAEPVRSVE-CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ-VSKVVCD 218 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~-CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~-~~~L~~D 218 (253)
.+.||||+. .|.+||. +. |||+||+.||..|+..+ +...||+ |+..+. .+.+.++
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~~CgH~fC~~Ci~~~~~~~-~~~~CP~--Cr~~~~~~~~~~~n 71 (74)
T 2yur_A 15 ELLCLICKD---IMTDAVV-IPCCGNSYCDECIRTALLES-DEHTCPT--CHQNDVSPDALSGP 71 (74)
T ss_dssp GGSCSSSCC---CCTTCEE-CSSSCCEECTTHHHHHHHHS-SSSCCSS--SCCSSCCTTTTTCT
T ss_pred CCCCcCCCh---HHhCCeE-cCCCCCHHHHHHHHHHHHhc-CCCcCCC--CCCcCCCccccccC
Confidence 688999995 6799999 66 99999999999999876 4578999 999643 4445544
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.3e-11 Score=86.14 Aligned_cols=53 Identities=21% Similarity=0.557 Sum_probs=46.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
.+.||||+. .|.+|+. ..|||+||+.||..|+........||+ |+..+...++
T Consensus 20 ~~~C~IC~~---~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~~ 72 (73)
T 2ysl_A 20 EVICPICLD---ILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPL--CKTSVRKNAI 72 (73)
T ss_dssp CCBCTTTCS---BCSSEEE-CTTCCEEEHHHHHHHCSSSCSCCCCSS--SCCCCCCCCC
T ss_pred CCEeccCCc---ccCCeEE-cCCCChhhHHHHHHHHHcCCCCCCCCC--CCCcCCcccC
Confidence 688999996 6799999 799999999999999975335678999 9999988765
No 28
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.10 E-value=2.4e-11 Score=113.06 Aligned_cols=78 Identities=21% Similarity=0.472 Sum_probs=63.8
Q ss_pred CCCcceeEeccCCccceeeccCCCCCCccccCCccccCCCCc--ccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 141 EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 141 d~ddDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~--f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
++||||+++. .+++|+|||++. .|+.|+++..|.|. |+..++..+..+. +.+.||+ |.+.+.+.+|..|
T Consensus 236 d~DdDIv~~s---~~vSL~CPlS~~---ri~~PvRg~~C~HlQCFDl~sfL~~~~~~-~~W~CPI--C~k~~~~~dL~ID 306 (371)
T 3i2d_A 236 DEEMGLTTTS---TIMSLQCPISYT---RMKYPSKSINCKHLQCFDALWFLHSQLQI-PTWQCPV--CQIDIALENLAIS 306 (371)
T ss_dssp CC------CE---EEEESBCTTTSS---BCSSEEEETTCCSSCCEEHHHHHHHHHHS-CCCBCTT--TCCBCCGGGEEEB
T ss_pred CCCCceeeee---eEEeecCCCccc---cccccCcCCcCCCcceECHHHHHHHhhcC-CceeCCC--CCcccCHHHeeEc
Confidence 5677888774 578999999995 67999999999999 9999999998776 7899999 9999999999999
Q ss_pred HHHHHHHHH
Q 025425 219 SLLLVDIDE 227 (253)
Q Consensus 219 ~~l~~~I~~ 227 (253)
..+.+.+..
T Consensus 307 ~~~~~IL~~ 315 (371)
T 3i2d_A 307 EFVDDILQN 315 (371)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 998877654
No 29
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.08 E-value=2.4e-11 Score=94.75 Aligned_cols=65 Identities=23% Similarity=0.462 Sum_probs=56.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC-------CCCccCHHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV-------SKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~-------~~L~~D~~l~~~I~~~~ 229 (253)
.+.||||+. .|.+||. ..|||+||+.||..|+..+ ...||+ |+..+.. .++..|..|...|+.+.
T Consensus 15 ~~~C~iC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~~~~~n~~l~~~i~~~~ 86 (115)
T 3l11_A 15 ECQCGICME---ILVEPVT-LPCNHTLCKPCFQSTVEKA--SLCCPF--CRRRVSSWTRYHTRRNSLVNVELWTIIQKHY 86 (115)
T ss_dssp HHBCTTTCS---BCSSCEE-CTTSCEECHHHHCCCCCTT--TSBCTT--TCCBCHHHHHHHHHTTCCBCHHHHHHHHHHS
T ss_pred CCCCccCCc---ccCceeE-cCCCCHHhHHHHHHHHhHC--cCCCCC--CCcccCccccccccccchhhHHHHHHHHHHC
Confidence 689999995 6799999 7999999999999999753 578999 9998863 77888999988888764
No 30
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.05 E-value=8.9e-11 Score=82.47 Aligned_cols=56 Identities=20% Similarity=0.411 Sum_probs=46.0
Q ss_pred eeeccCCCCCCccccCCcc---ccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 157 NISCPLSGKPITELAEPVR---SVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~---s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
.+.||||+. ..+.+|+. .+.|||+||+.||..|+..+ ...||+ |+..+...++.+.
T Consensus 3 ~~~C~IC~~--~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~ 61 (65)
T 1g25_A 3 DQGCPRCKT--TKYRNPSLKLMVNVCGHTLCESCVDLLFVRG--AGNCPE--CGTPLRKSNFRVQ 61 (65)
T ss_dssp TTCCSTTTT--HHHHCSSCCEEECTTCCCEEHHHHHHHHHTT--SSSCTT--TCCCCSSCCCEEE
T ss_pred CCcCCcCCC--CccCCCccCeecCCCCCHhHHHHHHHHHHcC--CCcCCC--CCCccccccceee
Confidence 578999994 16789952 37899999999999998754 578999 9999998888654
No 31
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=80.79 Aligned_cols=44 Identities=25% Similarity=0.636 Sum_probs=38.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGC 206 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC 206 (253)
.+.||||+. .|.+||. ..|||+||+.||..|+..++....||+ |
T Consensus 20 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--C 63 (63)
T 2ysj_A 20 EVICPICLD---ILQKPVT-IDCGHNFCLKCITQIGETSCGFFKCPL--C 63 (63)
T ss_dssp CCBCTTTCS---BCSSCEE-CTTSSEECHHHHHHHHHHCSSCCCCSC--C
T ss_pred CCCCCcCCc---hhCCeEE-eCCCCcchHHHHHHHHHcCCCCCcCcC--C
Confidence 688999996 6799999 799999999999999986434678998 7
No 32
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.02 E-value=1.8e-10 Score=89.81 Aligned_cols=64 Identities=25% Similarity=0.480 Sum_probs=52.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc-cCHHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV-CDSLLLVDIDEM 228 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~-~D~~l~~~I~~~ 228 (253)
.+.||||+. .|.+||. +.|||+||+.||..|+... ...||+ |+..+...++. ++..+...+..+
T Consensus 23 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~~l~~~i~~l 87 (116)
T 1rmd_A 23 SISCQICEH---ILADPVE-TSCKHLFCRICILRCLKVM--GSYCPS--CRYPCFPTDLESPVKSFLNILNSL 87 (116)
T ss_dssp HTBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHHT--CSBCTT--TCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred CCCCCCCCc---HhcCcEE-cCCCCcccHHHHHHHHhHC--cCcCCC--CCCCCCHhhccccHHHHHHHHHHh
Confidence 688999995 6799999 8999999999999999874 468999 99999988875 455555555443
No 33
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.02 E-value=1.6e-10 Score=95.97 Aligned_cols=66 Identities=24% Similarity=0.401 Sum_probs=58.2
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~ 229 (253)
..+.||||+. +|.+||. +.|||+||+.||..|+..+ ...||+ |+..+...++.++..+.+.|..++
T Consensus 17 ~~~~C~IC~~---~~~~pv~-~~CgH~fC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 17 SKYECPICLM---ALREAVQ-TPCGHRFCKACIIKSIRDA--GHKCPV--DNEILLENQLFPDNFAKREILSLM 82 (170)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHHHHH--CSBCTT--TCCBCCGGGCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCh---hhcCcEE-CCCCCHHHHHHHHHHHHhC--CCCCCC--CccCcchhhhhhhHHHHHHHhhcc
Confidence 3799999995 6799999 7999999999999999875 358999 999999999999999888887654
No 34
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.01 E-value=2.9e-11 Score=98.49 Aligned_cols=66 Identities=17% Similarity=0.344 Sum_probs=54.5
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC---------CCCCccCHHHHHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ---------VSKVVCDSLLLVDID 226 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~---------~~~L~~D~~l~~~I~ 226 (253)
..+.||||+. +|.+||+ +.|||+||+.||..|++.+ ...||+ |+..+. ..++.+|..+.+.|.
T Consensus 30 ~~~~C~IC~~---~~~~pv~-~~CgH~FC~~Ci~~~~~~~--~~~CP~--Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~ 101 (141)
T 3knv_A 30 AKYLCSACRN---VLRRPFQ-AQCGHRYCSFCLASILSSG--PQNCAA--CVHEGIYEEGISILESSSAFPDNAARREVE 101 (141)
T ss_dssp GGGBCTTTCS---BCSSEEE-CTTSCEEEHHHHHHHGGGS--CEECHH--HHHTTCCCTTTTEECGGGCEECHHHHHHHH
T ss_pred cCcCCCCCCh---hhcCcEE-CCCCCccCHHHHHHHHhcC--CCCCCC--CCCcccccccccccchhhhcccHHHHHHHc
Confidence 3799999995 7899999 8999999999999999764 468999 998643 346779998888887
Q ss_pred HHH
Q 025425 227 EMR 229 (253)
Q Consensus 227 ~~~ 229 (253)
.++
T Consensus 102 ~L~ 104 (141)
T 3knv_A 102 SLP 104 (141)
T ss_dssp TSE
T ss_pred ccc
Confidence 553
No 35
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.00 E-value=1.7e-10 Score=93.01 Aligned_cols=47 Identities=23% Similarity=0.699 Sum_probs=40.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.+.||||+. .|.+||. .+|||+||+.||..|+..+ ..||+ |+..+..
T Consensus 53 ~~~C~iC~~---~~~~~~~-~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSE---YFIEAVT-LNCAHSFCSYCINEWMKRK---IECPI--CRKDIKS 99 (138)
T ss_dssp HSBCTTTCS---BCSSEEE-ETTSCEEEHHHHHHHTTTC---SBCTT--TCCBCCC
T ss_pred cCCCcccCc---ccCCceE-CCCCCCccHHHHHHHHHcC---CcCCC--CCCcCCC
Confidence 467999996 6799998 7999999999999999764 67999 9998754
No 36
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=4.4e-10 Score=82.84 Aligned_cols=52 Identities=21% Similarity=0.618 Sum_probs=43.9
Q ss_pred eeeccCCCCCCccccC----CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE----PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~----Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.+.||||+. .|.+ |+. ..|||+||+.||..|+..+.....||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~--Cr~~~~~~~ 70 (88)
T 2ct2_A 15 VLECPICME---SFTEEQLRPKL-LHCGHTICRQCLEKLLASSINGVRCPF--CSKITRITS 70 (88)
T ss_dssp CCBCTTTCC---BCCTTSSCEEE-CSSSCEEEHHHHHHHHHHCSSCBCCTT--TCCCBCCSS
T ss_pred CCCCccCCc---cccccCCCeEE-CCCCChhhHHHHHHHHHcCCCCcCCCC--CCCcccchh
Confidence 578999996 5677 888 799999999999999987544678999 999887654
No 37
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=98.93 E-value=3.9e-10 Score=79.96 Aligned_cols=54 Identities=26% Similarity=0.582 Sum_probs=45.4
Q ss_pred eeeccCCCCCCccccCCc------cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 157 NISCPLSGKPITELAEPV------RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv------~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
.+.||||+. .|.+|+ ....|||+||+.||..|++.+ ..||+ |+..+...++.+.
T Consensus 10 ~~~C~IC~~---~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~~ 69 (71)
T 3ng2_A 10 TVSCPICMD---GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPT--CRKKINHKRYHPI 69 (71)
T ss_dssp CCBCTTTCC---BHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHC---SBCTT--TCCBCCCCSCCCC
T ss_pred CCCCcccCh---hhhccccccCCeEeCCCCChHhHHHHHHHHHcC---CCCCC--CCCccChhheeec
Confidence 688999996 568872 337999999999999999875 58999 9999998887653
No 38
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=8.8e-10 Score=75.08 Aligned_cols=43 Identities=33% Similarity=0.612 Sum_probs=37.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
.+.||||+. .+.+|+. +.|||+||+.||..|+........||+
T Consensus 15 ~~~C~IC~~---~~~~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~ 57 (58)
T 2ecj_A 15 EASCSVCLE---YLKEPVI-IECGHNFCKACITRWWEDLERDFPCPV 57 (58)
T ss_dssp CCBCSSSCC---BCSSCCC-CSSCCCCCHHHHHHHTTSSCCSCCCSC
T ss_pred CCCCccCCc---ccCccEe-CCCCCccCHHHHHHHHHhcCCCCCCCC
Confidence 688999996 6799998 899999999999999875334678998
No 39
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=2e-10 Score=82.18 Aligned_cols=49 Identities=18% Similarity=0.430 Sum_probs=42.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.+.||||+. .|.+||. ..|||+||+.||..|+..+ ..||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~~~~-~~CgH~fC~~Ci~~~~~~~---~~CP~--Cr~~~~~~~ 63 (71)
T 2d8t_A 15 VPECAICLQ---TCVHPVS-LPCKHVFCYLCVKGASWLG---KRCAL--CRQEIPEDF 63 (71)
T ss_dssp CCBCSSSSS---BCSSEEE-ETTTEEEEHHHHHHCTTCS---SBCSS--SCCBCCHHH
T ss_pred CCCCccCCc---ccCCCEE-ccCCCHHHHHHHHHHHHCC---CcCcC--cCchhCHhh
Confidence 578999995 6799998 7899999999999998764 68999 999886544
No 40
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=98.87 E-value=5.4e-10 Score=77.41 Aligned_cols=53 Identities=26% Similarity=0.600 Sum_probs=44.1
Q ss_pred eeeccCCCCCCccccCCc------cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEPV------RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv------~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
.+.||||+. .+.+|+ ....|||+||+.||..|++.+ ..||+ |+..+...++.+
T Consensus 3 ~~~C~IC~~---~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~ 61 (64)
T 2xeu_A 3 MVSCPICMD---GYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA---NTCPT--CRKKINHKRYHP 61 (64)
T ss_dssp CCBCTTTCC---BHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHC---SBCTT--TCCBCTTTCEEE
T ss_pred CCCCCccCh---hhhCccccCCCEEeCCCCCchhHHHHHHHHHcC---CCCCC--CCccCCccceee
Confidence 578999996 567772 337999999999999999875 58999 999998877654
No 41
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=98.86 E-value=1.1e-09 Score=101.69 Aligned_cols=78 Identities=26% Similarity=0.553 Sum_probs=62.6
Q ss_pred CCCcceeEeccCCccceeeccCCCCCCccccCCccccCCCCc--ccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 141 EEQEDIVMTSTQSNILNISCPLSGKPITELAEPVRSVECKHI--YEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 141 d~ddDi~i~~~~~~~~~~~CPIt~~~~~~l~~Pv~s~~CgH~--f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
++|+||+++. .+++++|||++. .|+.|+++..|.|. |+..++..+..+. +.+.||+ |.+.+.+.+|..|
T Consensus 202 d~DddI~~~~---~~vSL~CPlS~~---ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~-~~W~CPi--C~k~~~~~dL~ID 272 (360)
T 4fo9_A 202 DPDSEIATTS---LRVSLMCPLGKM---RLTIPCRAVTCTHLQCFDAALYLQMNEKK-PTWICPV--CDKKAAYESLILD 272 (360)
T ss_dssp --------CC---EEEESBCTTTCS---BCSSEEEETTCCCCCCEEHHHHHHHHHHS-CCCBCTT--TCSBCCGGGEEEB
T ss_pred CCccceeeee---eEEeeeCCCccc---eeccCCcCCCCCCCccCCHHHHHHHHhhC-CCeECCC--CCcccCHHHeEEc
Confidence 4577777763 578999999995 77999999999999 9999999998876 7899999 9999999999999
Q ss_pred HHHHHHHHH
Q 025425 219 SLLLVDIDE 227 (253)
Q Consensus 219 ~~l~~~I~~ 227 (253)
..+...+..
T Consensus 273 ~~~~~IL~~ 281 (360)
T 4fo9_A 273 GLFMEILND 281 (360)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 988887654
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.83 E-value=3e-09 Score=78.34 Aligned_cols=53 Identities=19% Similarity=0.417 Sum_probs=41.0
Q ss_pred eeeccCCCCCCccccCCccccC--CCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVE--CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~--CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
.+.||||+.+| .+.+|+. .. |||+||+.||..++... ...||+ |++.+....+
T Consensus 11 ~~~CpICle~~-~~~d~~~-~p~~CGH~fC~~Cl~~~~~~~--~~~CP~--CR~~~~~~~~ 65 (78)
T 1e4u_A 11 PVECPLCMEPL-EIDDINF-FPCTCGYQICRFCWHRIRTDE--NGLCPA--CRKPYPEDPA 65 (78)
T ss_dssp CCBCTTTCCBC-CTTTTTC-CSSTTSCCCCHHHHHHHTTSS--CSBCTT--TCCBCSSCSS
T ss_pred CCcCCccCccC-ccccccc-cccCCCCCcCHHHHHHHHhcC--CCCCCC--CCCccCCCch
Confidence 57899999764 3344443 44 99999999999998653 578999 9998876655
No 43
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.81 E-value=6.8e-10 Score=83.71 Aligned_cols=56 Identities=23% Similarity=0.492 Sum_probs=43.6
Q ss_pred ceeeccCCCCCCccccCCccc--cCCCCcccHHHHHHHHHhC---C--CCCCCCCCCCCCC--CCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRS--VECKHIYEKNAIQAYIKSK---N--ANARCPVAGCPRK--LQVSK 214 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s--~~CgH~f~k~~I~~~l~~~---~--~~~~CPv~GC~~~--l~~~~ 214 (253)
..+.||||+. .+..|+.. ..|||+||++||..||... + ..+.||..||+.. +.+..
T Consensus 4 ~~~~C~IC~~---~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~ 68 (94)
T 1wim_A 4 GSSGCKLCLG---EYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENE 68 (94)
T ss_dssp SBCCCSSSCC---CCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHH
T ss_pred CCcCCcccCc---ccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHH
Confidence 3788999995 56888753 2699999999999999742 1 2468999999998 65443
No 44
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.80 E-value=2e-09 Score=77.97 Aligned_cols=55 Identities=22% Similarity=0.661 Sum_probs=44.9
Q ss_pred eeeccCCCCCCccccCCc--cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCH
Q 025425 157 NISCPLSGKPITELAEPV--RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDS 219 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv--~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~ 219 (253)
.+.||||+. .|.+|. ....|||+||+.||..|++.+ ..||+ |+..+...++.+++
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~~~ 71 (78)
T 2ect_A 15 GLECPVCKE---DYALGESVRQLPCNHLFHDSCIVPWLEQH---DSCPV--CRKSLTGQNTATNP 71 (78)
T ss_dssp SCCCTTTTS---CCCTTSCEEECTTSCEEETTTTHHHHTTT---CSCTT--TCCCCCCSCSCCCC
T ss_pred CCCCeeCCc---cccCCCCEEEeCCCCeecHHHHHHHHHcC---CcCcC--cCCccCCcccCCCC
Confidence 578999996 456553 335899999999999999764 68999 99999988887664
No 45
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.79 E-value=2.2e-09 Score=75.35 Aligned_cols=47 Identities=28% Similarity=0.716 Sum_probs=39.9
Q ss_pred eeeccCCCCCCccccCC-------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P-------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.+.||||+. .|.+| +. ..|||+||+.||..|+..+ ..||+ |+..|..
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~ 68 (69)
T 2ea6_A 15 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNA---NTCPT--CRKKINH 68 (69)
T ss_dssp CCCCTTTCC---CHHHHTTTTCCEEE-CSSSCEEEHHHHHHHHHHC---SSCTT--TCCCCCC
T ss_pred CCCCcccCc---cccccccccCCeEe-CCCCChhcHHHHHHHHHcC---CCCCC--CCCccCc
Confidence 678999996 56777 55 7999999999999999874 58999 9988764
No 46
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=98.73 E-value=6.7e-09 Score=73.07 Aligned_cols=47 Identities=19% Similarity=0.536 Sum_probs=40.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+. .+.+|+....|||+||+.||..|++.+ ..||+ |+..+.
T Consensus 5 ~~~C~IC~~---~~~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~--Cr~~~~ 51 (68)
T 1chc_A 5 AERCPICLE---DPSNYSMALPCLHAFCYVCITRWIRQN---PTCPL--CKVPVE 51 (68)
T ss_dssp CCCCSSCCS---CCCSCEEETTTTEEESTTHHHHHHHHS---CSTTT--TCCCCC
T ss_pred CCCCeeCCc---cccCCcEecCCCCeeHHHHHHHHHhCc---CcCcC--CChhhH
Confidence 567999996 568986558999999999999999865 58999 998775
No 47
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.68 E-value=1.7e-08 Score=67.93 Aligned_cols=47 Identities=19% Similarity=0.566 Sum_probs=38.3
Q ss_pred eeeccCCCCCCccccC---CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~---Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+.. |.+ ++....|||+|++.||..|++.+ ..||+ |+..+.
T Consensus 5 ~~~C~IC~~~---~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLED---IHTSRVVAHVLPCGHLLHRTCYEEMLKEG---YRCPL--CSGPSS 54 (55)
T ss_dssp CCSCTTTCCC---CCTTTSCEEECTTSCEEETTHHHHHHHHT---CCCTT--SCCSSC
T ss_pred CCcCcccChh---hcCCCcCeEecCCCCcccHHHHHHHHHcC---CcCCC--CCCcCC
Confidence 6789999974 444 44448999999999999999875 78999 998764
No 48
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.65 E-value=2e-08 Score=70.85 Aligned_cols=50 Identities=20% Similarity=0.654 Sum_probs=38.3
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
...||||+..|.. .+++....|||+|++.||..|+..+ ..||+ |+..+..
T Consensus 14 ~~~C~IC~~~~~~-~~~~~~~~C~H~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~ 63 (69)
T 2kiz_A 14 EEKCTICLSILEE-GEDVRRLPCMHLFHQVCVDQWLITN---KKCPI--CRVDIEA 63 (69)
T ss_dssp CCSBTTTTBCCCS-SSCEEECTTSCEEEHHHHHHHHHHC---SBCTT--TCSBSCS
T ss_pred CCCCeeCCccccC-CCcEEEeCCCCHHHHHHHHHHHHcC---CCCcC--cCccccC
Confidence 5679999964311 1334447899999999999999875 46999 9987754
No 49
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.65 E-value=6.2e-09 Score=81.64 Aligned_cols=52 Identities=25% Similarity=0.626 Sum_probs=44.3
Q ss_pred eeeccCCCCCCccccCC-------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P-------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
.+.||||+. .|.+| +. +.|||+||+.||..|++.+ ..||+ |+..+...++.+
T Consensus 7 ~~~C~IC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~~~l~~ 65 (133)
T 4ap4_A 7 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNA---NTCPT--CRKKINHKRYHP 65 (133)
T ss_dssp SCBCTTTCC---BHHHHHHTTCCEEE-ETTCCEEEHHHHHHHHTTC---SBCTT--TCCBCTTTCEEE
T ss_pred CCCCcccCh---hhhCccccccCeEe-cCCCChhhHHHHHHHHHhC---CCCCC--CCCcCccccccc
Confidence 689999995 67888 55 8999999999999999865 58999 999888776544
No 50
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.64 E-value=7e-09 Score=71.09 Aligned_cols=45 Identities=20% Similarity=0.501 Sum_probs=38.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.+.||||+. .|.+|+. ..|||+||+.||.. ....||+ |++.+...
T Consensus 6 ~~~C~IC~~---~~~~p~~-l~CgH~fC~~Ci~~------~~~~CP~--Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQA---EAKCPKL-LPCLHTLCSGCLEA------SGMQCPI--CQAPWPLG 50 (56)
T ss_dssp CSSCSSSCS---SCBCCSC-STTSCCSBTTTCSS------SSSSCSS--CCSSSSCC
T ss_pred CCCceEeCC---ccCCeEE-cCCCCcccHHHHcc------CCCCCCc--CCcEeecC
Confidence 678999996 6799988 89999999999876 2468999 99987654
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=2.7e-08 Score=71.53 Aligned_cols=49 Identities=18% Similarity=0.551 Sum_probs=39.9
Q ss_pred eeeccCCCCCCccccCC--ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEP--VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P--v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
...||||+. .|.+| +....|||+|+..||..|++.+ ..||+ |+..+...
T Consensus 23 ~~~C~IC~~---~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~---~~CP~--Cr~~~~~~ 73 (75)
T 1x4j_A 23 QTLCVVCMC---DFESRQLLRVLPCNHEFHAKCVDKWLKAN---RTCPI--CRADSGPS 73 (75)
T ss_dssp CCEETTTTE---ECCBTCEEEEETTTEEEETTHHHHHHHHC---SSCTT--TCCCCCCC
T ss_pred CCCCeECCc---ccCCCCeEEEECCCCHhHHHHHHHHHHcC---CcCcC--cCCcCCCC
Confidence 567999996 45666 4447899999999999999875 58999 99987654
No 52
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=5.2e-08 Score=69.63 Aligned_cols=47 Identities=15% Similarity=0.507 Sum_probs=38.5
Q ss_pred eeeccCCCCCCccccCCccc--cCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRS--VECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s--~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+. .|.+|... ..|||+|++.||..|++.+ ..||+ |+..+.
T Consensus 15 ~~~C~IC~~---~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~---~~CP~--Cr~~~~ 63 (74)
T 2ep4_A 15 HELCAVCLE---DFKPRDELGICPCKHAFHRKCLIKWLEVR---KVCPL--CNMPVL 63 (74)
T ss_dssp SCBCSSSCC---BCCSSSCEEEETTTEEEEHHHHHHHHHHC---SBCTT--TCCBCS
T ss_pred CCCCcCCCc---ccCCCCcEEEcCCCCEecHHHHHHHHHcC---CcCCC--cCcccc
Confidence 567999996 55777552 3899999999999999875 48999 998765
No 53
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.55 E-value=3.5e-08 Score=66.48 Aligned_cols=47 Identities=17% Similarity=0.506 Sum_probs=37.2
Q ss_pred eeeccCCCCCCccccC---CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~---Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+.. |.+ |+....|||+|++.||..|++.+ ..||+ |+..+.
T Consensus 5 ~~~C~IC~~~---~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~---~~CP~--Cr~~~~ 54 (55)
T 1iym_A 5 GVECAVCLAE---LEDGEEARFLPRCGHGFHAECVDMWLGSH---STCPL--CRLTVV 54 (55)
T ss_dssp SCCCTTTCCC---CCTTSCCEECSSSCCEECTTHHHHTTTTC---CSCSS--SCCCSC
T ss_pred CCcCccCCcc---ccCCCceEECCCCCCcccHHHHHHHHHcC---CcCcC--CCCEeE
Confidence 5679999974 455 66633599999999999999764 58999 998764
No 54
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.52 E-value=4.1e-08 Score=73.54 Aligned_cols=47 Identities=19% Similarity=0.660 Sum_probs=38.1
Q ss_pred eeeccCCCCCCccccC---CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE---PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~---Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
...||||+.. |.+ ++. ..|||+|+..||..|++.+ ..||+ |+..+..
T Consensus 40 ~~~C~IC~~~---~~~~~~~~~-l~C~H~Fh~~Ci~~wl~~~---~~CP~--Cr~~~~~ 89 (91)
T 2l0b_A 40 EMCCPICCSE---YVKGDVATE-LPCHHYFHKPCVSIWLQKS---GTCPV--CRCMFPP 89 (91)
T ss_dssp CSEETTTTEE---CCTTCEEEE-ETTTEEEEHHHHHHHHTTT---CBCTT--TCCBSSC
T ss_pred CCCCcccChh---hcCCCcEEe-cCCCChHHHHHHHHHHHcC---CcCcC--cCccCCC
Confidence 6789999963 444 544 7899999999999999865 58999 9987754
No 55
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.51 E-value=8e-08 Score=74.25 Aligned_cols=50 Identities=20% Similarity=0.428 Sum_probs=38.7
Q ss_pred eeeccCCCCCCccccCCc-----------------cccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPV-----------------RSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv-----------------~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
+..||||+. .|.+|+ ....|||+|++.||..|+... .....||+ |+..+.
T Consensus 25 ~~~C~ICl~---~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~--CR~~~~ 93 (114)
T 1v87_A 25 EEDCIICME---KLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS--CKTIYG 93 (114)
T ss_dssp SCEETTTTE---ETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTT--TCCBSS
T ss_pred CCcCccCCh---hhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCC--CCCccC
Confidence 457999996 566664 136899999999999999642 13568999 998765
No 56
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.49 E-value=1.4e-08 Score=71.88 Aligned_cols=48 Identities=17% Similarity=0.495 Sum_probs=39.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.+.||||+. .+.+ +. ..|||+||+.||..|+.. ...||+ |+..+...+
T Consensus 15 ~~~C~IC~~---~~~~-~~-~~CgH~fc~~Ci~~~~~~---~~~CP~--Cr~~~~~~~ 62 (70)
T 2ecn_A 15 EEECCICMD---GRAD-LI-LPCAHSFCQKCIDKWSDR---HRNCPI--CRLQMTGAN 62 (70)
T ss_dssp CCCCSSSCC---SCCS-EE-ETTTEEECHHHHHHSSCC---CSSCHH--HHHCTTCCC
T ss_pred CCCCeeCCc---CccC-cc-cCCCCcccHHHHHHHHHC---cCcCCC--cCCcccCCC
Confidence 678999996 4566 65 799999999999999874 478999 998887554
No 57
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=98.44 E-value=9.8e-08 Score=97.96 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=60.7
Q ss_pred eeeccCCCCCCccccCCccccCCC-CcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHHHcCcc
Q 025425 157 NISCPLSGKPITELAEPVRSVECK-HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMRRTSKE 234 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~Cg-H~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~~~~~~ 234 (253)
.|.||||+. +|+|||. .+.| ++|+|.+|..|+..+ ..||+ -+..++..+|.||..|+..|++|+..+++
T Consensus 891 ~F~cPIs~~---lM~DPVi-lpsG~~TydR~~I~~wl~~~---~tdP~--Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~ 960 (968)
T 3m62_A 891 EFLDPLMYT---IMKDPVI-LPASKMNIDRSTIKAHLLSD---STDPF--NRMPLKLEDVTPNEELRQKILCFKKQKKE 960 (968)
T ss_dssp GGBCTTTCS---BCSSEEE-CTTTCCEEEHHHHHHHHTTC---CBCTT--TCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred HhCCcchhh---HHhCCeE-cCCCCEEECHHHHHHHHhcC---CCCCC--CCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence 799999995 8999999 7887 699999999999864 47999 66899999999999999999999874443
No 58
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.38 E-value=6e-08 Score=75.92 Aligned_cols=52 Identities=25% Similarity=0.626 Sum_probs=44.1
Q ss_pred eeeccCCCCCCccccCC-------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCcc
Q 025425 157 NISCPLSGKPITELAEP-------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVC 217 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P-------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~ 217 (253)
.+.||||+. .|.+| +. ..|||+||..||..|+..+ ..||+ |+..+..+++.+
T Consensus 72 ~~~C~iC~~---~~~~~~~~~~~~~~-~~CgH~fc~~Ci~~~~~~~---~~CP~--Cr~~~~~~~~~~ 130 (133)
T 4ap4_A 72 TVSCPICMD---GYSEIVQNGRLIVS-TECGHVFCSQCLRDSLKNA---NTCPT--CRKKINHKRYHP 130 (133)
T ss_dssp SCBCTTTCC---BHHHHHHTTCCEEE-ETTSBEEEHHHHHHHHHHC---SBCTT--TCCBCCGGGEEE
T ss_pred CCCCCCCCC---ccccccccCcceEe-CCCCChhhHHHHHHHHHcC---CCCCC--CCCcCChhccee
Confidence 688999996 56776 54 7999999999999999875 58999 999998877654
No 59
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.36 E-value=2e-07 Score=87.51 Aligned_cols=49 Identities=14% Similarity=0.425 Sum_probs=41.8
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
..||||.. .+.+||. .+|||+||..||..|+... ...||+ |+..+....
T Consensus 333 ~~C~ICle---~~~~pv~-lpCGH~FC~~Ci~~wl~~~--~~~CP~--CR~~i~~~~ 381 (389)
T 2y1n_A 333 QLCKICAE---NDKDVKI-EPCGHLMCTSCLTSWQESE--GQGCPF--CRCEIKGTE 381 (389)
T ss_dssp SBCTTTSS---SBCCEEE-ETTCCEECHHHHHHHHHHT--CSBCTT--TCCBCCEEE
T ss_pred CCCCccCc---CCCCeEE-eCCCChhhHHHHHHHHhcC--CCCCCC--CCCccCCce
Confidence 78999996 6799998 8999999999999999853 468999 999876543
No 60
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.27 E-value=2e-07 Score=67.29 Aligned_cols=42 Identities=24% Similarity=0.460 Sum_probs=36.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.+.||||+. .+.+||. .+|||+ ||+.|+..+ ..||+ |+..+.
T Consensus 24 ~~~C~iC~~---~~~~~~~-~pCgH~~~C~~C~~~~-------~~CP~--Cr~~i~ 66 (74)
T 4ic3_A 24 EKLCKICMD---RNIAIVF-VPCGHLVTCKQCAEAV-------DKCPM--CYTVIT 66 (74)
T ss_dssp HTBCTTTSS---SBCCEEE-ETTCCBCCCHHHHTTC-------SBCTT--TCCBCS
T ss_pred CCCCCCCCC---CCCCEEE-cCCCChhHHHHhhhcC-------ccCCC--cCcCcc
Confidence 578999995 6799998 799999 999998765 57999 998775
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.26 E-value=4.7e-07 Score=65.32 Aligned_cols=43 Identities=23% Similarity=0.442 Sum_probs=36.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.+.||||+. .+.+||. .+|||+ ||+.|+.. ...||+ |+..+..
T Consensus 25 ~~~C~IC~~---~~~~~~~-~pCgH~~~C~~C~~~-------~~~CP~--Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMD---RNIAIVF-VPCGHLVTCKQCAEA-------VDKCPM--CYTVITF 68 (75)
T ss_dssp HHSCSSSCS---SCCCBCC-SSSCCCCBCHHHHHH-------CSBCTT--TCCBCCC
T ss_pred CCCCCcCCC---CCCCEEE-ecCCCHHHHHHHhhC-------CCCCcc--CCceecC
Confidence 578999995 6799998 899999 99999853 268999 9997754
No 62
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=3.2e-07 Score=67.32 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=37.6
Q ss_pred eeeccCCCCCCccccC--------------CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE--------------PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSK 214 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~--------------Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~ 214 (253)
.-.|+||+.+ |.+ ++....|||+|.+.||..|+..+ ..||+ |+..+...+
T Consensus 15 ~~~C~IC~~~---~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~--CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQ---VMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQN---NRCPL--CQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBC---TTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTC---CBCTT--TCCBCCEEE
T ss_pred CCCCcccChh---hhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhC---CCCCC--cCCCcchhh
Confidence 3458888853 454 44434699999999999999875 48999 999876543
No 63
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.98 E-value=2.9e-06 Score=65.78 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=37.1
Q ss_pred eeccCCCCCCccccCC-----------------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEP-----------------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~P-----------------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-.|+||+.. |.+| +....|||.|...||..||..+ ..||+ |+..+..
T Consensus 38 d~CaIC~~~---~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~---~~CP~--Cr~~~~~ 101 (106)
T 3dpl_R 38 DNCAICRNH---IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPL--DNREWEF 101 (106)
T ss_dssp CCCSSSCSC---TTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTC---SBCSS--SCSBCCE
T ss_pred CCCccCChh---HhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcC---CcCcC--CCCccee
Confidence 459999864 4554 4546899999999999999864 67999 9987643
No 64
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=97.97 E-value=3.8e-06 Score=58.96 Aligned_cols=46 Identities=20% Similarity=0.324 Sum_probs=38.6
Q ss_pred eeeccCCCCCCccccCCcccc--CCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSV--ECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~--~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...|+||+. .+.+++. . +|||. ||..|+..++..+ ..||+ |++.+.
T Consensus 8 ~~~C~IC~~---~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~---~~CPi--CR~~i~ 56 (64)
T 2vje_A 8 IEPCVICQG---RPKNGCI-VHGKTGHLMACFTCAKKLKKRN---KPCPV--CRQPIQ 56 (64)
T ss_dssp GSCCTTTSS---SCSCEEE-EETTEEEEEECHHHHHHHHHTT---CCCTT--TCCCCC
T ss_pred cCCCCcCCC---CCCCEEE-ECCCCCChhhHHHHHHHHHHcC---CcCCC--cCcchh
Confidence 567999995 6688886 4 99999 8999999998754 57999 998774
No 65
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=97.96 E-value=3.5e-06 Score=58.94 Aligned_cols=46 Identities=22% Similarity=0.420 Sum_probs=38.2
Q ss_pred eeeccCCCCCCccccCCcccc--CCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSV--ECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~--~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...|+||+. ..++|+. . +|||. ||..|+..+++.+ ..||+ |++.+.
T Consensus 7 ~~~C~IC~~---~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~---~~CPi--CR~~i~ 55 (63)
T 2vje_B 7 LKPCSLCEK---RPRDGNI-IHGRTGHLVTCFHCARRLKKAG---ASCPI--CKKEIQ 55 (63)
T ss_dssp GSBCTTTSS---SBSCEEE-EETTEEEEEECHHHHHHHHHTT---CBCTT--TCCBCC
T ss_pred CCCCcccCC---cCCCeEE-EecCCCCHhHHHHHHHHHHHhC---CcCCC--cCchhh
Confidence 567999995 5688875 5 99998 9999999988754 68999 999774
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=97.77 E-value=5e-06 Score=60.84 Aligned_cols=42 Identities=19% Similarity=0.479 Sum_probs=35.4
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
...||||+. .+.+||. .+|||. ||..|+..+ ..||+ |+..+.
T Consensus 18 ~~~C~IC~~---~~~~~v~-~pCgH~~~C~~C~~~~-------~~CP~--Cr~~i~ 60 (79)
T 2yho_A 18 AMLCMVCCE---EEINSTF-CPCGHTVCCESCAAQL-------QSCPV--CRSRVE 60 (79)
T ss_dssp HTBCTTTSS---SBCCEEE-ETTCBCCBCHHHHTTC-------SBCTT--TCCBCC
T ss_pred CCEeEEeCc---ccCcEEE-ECCCCHHHHHHHHHhc-------CcCCC--CCchhh
Confidence 467999995 6799998 799999 999998754 38999 999765
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.72 E-value=4.5e-06 Score=77.16 Aligned_cols=42 Identities=17% Similarity=0.506 Sum_probs=36.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.+.||||+. .+.+||. .+|||+ ||+.|+..+ ..||+ |+..+.
T Consensus 295 ~~~C~IC~~---~~~~~v~-lpCgH~~fC~~C~~~~-------~~CP~--CR~~i~ 337 (345)
T 3t6p_A 295 ERTCKVCMD---KEVSVVF-IPCGHLVVCQECAPSL-------RKCPI--CRGIIK 337 (345)
T ss_dssp TCBCTTTSS---SBCCEEE-ETTCCEEECTTTGGGC-------SBCTT--TCCBCC
T ss_pred CCCCCccCC---cCCceEE-cCCCChhHhHHHHhcC-------CcCCC--CCCCcc
Confidence 588999995 6799998 799999 999998765 57999 998775
No 68
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.69 E-value=5.3e-06 Score=65.53 Aligned_cols=47 Identities=19% Similarity=0.484 Sum_probs=0.0
Q ss_pred eeccCCCCCCccccCC-----------------ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEP-----------------VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~P-----------------v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-.|+||+.. |.+| +....|||.|...||..||..+ ..||+ |+..+..
T Consensus 49 d~CaICl~~---~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~---~~CP~--Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNH---IMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTR---QVCPL--DNREWEF 112 (117)
T ss_dssp ------------------------------------------------------------------------
T ss_pred CcCeECChh---hcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcC---CcCCC--CCCeeee
Confidence 359999864 4543 3335899999999999999875 57999 9987654
No 69
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=3.3e-05 Score=54.85 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=35.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCc-ccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHI-YEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~-f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
...|+||+. ...+||. .+|||. ||..|+.. ...||+ |+..|..
T Consensus 15 ~~~C~IC~~---~~~~~v~-~pCgH~~~C~~C~~~-------~~~CP~--CR~~i~~ 58 (68)
T 2ea5_A 15 SKDCVVCQN---GTVNWVL-LPCRHTCLCDGCVKY-------FQQCPM--CRQFVQE 58 (68)
T ss_dssp SSCCSSSSS---SCCCCEE-TTTTBCCSCTTHHHH-------CSSCTT--TCCCCCC
T ss_pred CCCCCCcCc---CCCCEEE-ECCCChhhhHHHHhc-------CCCCCC--CCcchhc
Confidence 567999995 6689988 899999 99999883 258999 9997753
No 70
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.50 E-value=8.7e-05 Score=54.52 Aligned_cols=52 Identities=19% Similarity=0.425 Sum_probs=41.0
Q ss_pred eeeccCCCCCCccccCCccccCCC-----CcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECK-----HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~Cg-----H~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
...|+||+..+ .-.+|+. .+|+ |.|-+.||..||..+ +...||+ |+..+...
T Consensus 15 ~~~C~IC~~~~-~~~~~l~-~pC~C~Gs~h~fH~~Cl~~Wl~~~-~~~~Cpl--Cr~~~~~~ 71 (80)
T 2d8s_A 15 QDICRICHCEG-DDESPLI-TPCHCTGSLHFVHQACLQQWIKSS-DTRCCEL--CKYEFIME 71 (80)
T ss_dssp SCCCSSSCCCC-CSSSCEE-CSSSCCSSSCCEETTHHHHHHHHH-CCSBCSS--SCCBCCCC
T ss_pred CCCCeEcCccc-cCCCeeE-eccccCCcCCeeCHHHHHHHHhhC-CCCCCCC--CCCeeecC
Confidence 35699999643 2357886 7886 999999999999876 4578999 99977643
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.40 E-value=9.9e-05 Score=56.61 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=30.0
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCC
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPV 203 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv 203 (253)
.||+|..|| .-=.+..+|+|+||.+|+..|.+++ ...||.
T Consensus 3 fC~~C~~Pi---~iygRmIPCkHvFCydCa~~~~~~~--~k~Cp~ 42 (101)
T 3vk6_A 3 FCDKCGLPI---KVYGRMIPCKHVFCYDCAILHEKKG--DKMCPG 42 (101)
T ss_dssp BCTTTCSBC---SEEEEEETTCCEEEHHHHHHHHHTT--CCBCTT
T ss_pred ecCccCCCe---EEEeeeccccccHHHHHHHHHHhcc--CCCCcC
Confidence 499999876 4444667999999999999998653 234554
No 72
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.97 E-value=0.00085 Score=48.65 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=37.0
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-.|+||... +..=.+...|+|.|=..||..||+.+ ....||. |+..+.
T Consensus 16 ~~C~IC~~~---i~~g~~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~--Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSL---LIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPH--CNDYWP 63 (74)
T ss_dssp CBCSSSCCB---CSSSEECSSSCCEECHHHHHHHSTTC-SSCCCTT--TCSCCC
T ss_pred CcCcchhhH---cccCCccCCCCchhhHHHHHHHHHhc-CCCCCCC--CcCcCC
Confidence 469999964 33333445899999999999999875 3478999 998654
No 73
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=95.61 E-value=0.0026 Score=58.91 Aligned_cols=50 Identities=18% Similarity=0.446 Sum_probs=36.3
Q ss_pred eeeccCCCCCCccccC----Ccc---ccCCCCcccHHHHHHHHHhCCC---C-----CCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAE----PVR---SVECKHIYEKNAIQAYIKSKNA---N-----ARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~----Pv~---s~~CgH~f~k~~I~~~l~~~~~---~-----~~CPv~GC~~~l~ 211 (253)
...|+||.. .+.+ |-. +..|||.|-..||.+|++.... + -.||. |++.|+
T Consensus 308 ~~ECaICys---~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPy--Cr~pIs 372 (381)
T 3k1l_B 308 ELRCNICFA---YRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPF--CKAKLS 372 (381)
T ss_dssp CCSCSSSCC---SSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTT--TCCEEE
T ss_pred CccCcccce---eecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCC--CCCcCC
Confidence 455999996 3344 432 5689999999999999986311 1 25999 999765
No 74
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=95.10 E-value=0.027 Score=38.73 Aligned_cols=48 Identities=15% Similarity=0.369 Sum_probs=36.6
Q ss_pred eeccCCCCCCccccCCccccCC--CC---cccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVEC--KH---IYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~C--gH---~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
-.|.||+. ...+|+. .+| .| .|=+.||..|+..+ +...||+ |+..+..
T Consensus 7 ~~CrIC~~---~~~~~l~-~PC~C~gs~~~~H~~Cl~~W~~~~-~~~~C~~--C~~~~~~ 59 (60)
T 1vyx_A 7 PVCWICNE---ELGNERF-RACGCTGELENVHRSCLSTWLTIS-RNTACQI--CGVVYNT 59 (60)
T ss_dssp CEETTTTE---ECSCCCC-CSCCCSSGGGSCCHHHHHHHHHHH-TCSBCTT--TCCBCCC
T ss_pred CEeEEeec---CCCCcee-cCcCCCCchhhhHHHHHHHHHHhC-CCCccCC--CCCeeec
Confidence 45999985 3466775 565 45 79999999999865 4578999 9987754
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=94.97 E-value=0.013 Score=43.74 Aligned_cols=35 Identities=17% Similarity=0.443 Sum_probs=27.9
Q ss_pred eeeccCCCCCCccccCCccc-cCCCCcccHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRS-VECKHIYEKNAIQAYIK 193 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s-~~CgH~f~k~~I~~~l~ 193 (253)
.+.|+||.. ..+.+||.+ ..|+|+||+.|+..+..
T Consensus 3 e~~C~~C~~--~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 3 KVLCQFCDQ--DPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCBCTTCCS--SSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCcCCCC--CCCCCceEECCcCChHHhHHHCHHHhc
Confidence 478999985 236788865 78999999999998543
No 76
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=94.56 E-value=0.47 Score=40.35 Aligned_cols=32 Identities=9% Similarity=0.146 Sum_probs=27.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAI 188 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I 188 (253)
.-.|++|..+|+++..---...||++||..|.
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs 192 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT 192 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHh
Confidence 45899999999888777777789999999874
No 77
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=91.94 E-value=0.13 Score=44.76 Aligned_cols=48 Identities=21% Similarity=0.402 Sum_probs=36.8
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
..|.||... +..=++...|+|.|=..|+..|++.+ +...||. |+....
T Consensus 181 ~~C~iC~~i---v~~g~~C~~C~~~~H~~C~~~~~~~~-~~~~CP~--C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSL---LIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPH--CNDYWP 228 (238)
T ss_dssp CBCTTTCSB---CSSCEECSSSCCEECHHHHHHHTTTC-SSCBCTT--TCCBCC
T ss_pred CcCcchhhH---HhCCcccCccChHHHHHHHHHHHHhC-CCCCCCC--CCCCCC
Confidence 459999974 23335555699999999999999875 5678998 998643
No 78
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=90.36 E-value=1.2 Score=38.10 Aligned_cols=32 Identities=9% Similarity=0.180 Sum_probs=26.5
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
-.|++|..+|+++..---...||++||..|-.
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~ 196 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSS 196 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCC
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcC
Confidence 47999999998887766667899999998844
No 79
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=88.65 E-value=7.4 Score=31.19 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=59.3
Q ss_pred HHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCCCCChh
Q 025425 16 IRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQPGTELT 95 (253)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~~~~~~ 95 (253)
|-+.=..+..+.+.+++.++.-=++|-++-.|...-+-.+.-++|+....++-.+..++..+..-+...+ |
T Consensus 12 ~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ek---------P 82 (141)
T 3okq_A 12 MEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEK---------P 82 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
T ss_pred HHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------c
Confidence 3334444555577788888887778888888888766667788888888888888888877666664432 5
Q ss_pred hHHHHHHHHHhh
Q 025425 96 DFKKLLVDEDAK 107 (253)
Q Consensus 96 ~f~~~~~~~~~~ 107 (253)
.|++.|+.++..
T Consensus 83 ~WKKiWE~EL~~ 94 (141)
T 3okq_A 83 HWKKTWEAELDK 94 (141)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 678888877754
No 80
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=82.01 E-value=0.52 Score=36.97 Aligned_cols=31 Identities=16% Similarity=0.318 Sum_probs=26.1
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAI 188 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I 188 (253)
-.|++|..+|++|..---...||++||..|.
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs 100 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIFCAECS 100 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGS
T ss_pred CCCcCcCCccccccccccCCCCCeEEChHHh
Confidence 3599999999888777766789999999884
No 81
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=80.20 E-value=0.65 Score=35.62 Aligned_cols=30 Identities=27% Similarity=0.706 Sum_probs=21.5
Q ss_pred cccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 169 ELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 169 ~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
++..|.+...||++|. .....+..||. |..
T Consensus 63 L~v~p~~C~~CG~~F~--------~~~~kPsrCP~--CkS 92 (105)
T 2gmg_A 63 LLIKPAQCRKCGFVFK--------AEINIPSRCPK--CKS 92 (105)
T ss_dssp EEECCCBBTTTCCBCC--------CCSSCCSSCSS--SCC
T ss_pred EEEECcChhhCcCeec--------ccCCCCCCCcC--CCC
Confidence 4567778889999992 12225678999 986
No 82
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=78.79 E-value=0.51 Score=34.75 Aligned_cols=66 Identities=20% Similarity=0.397 Sum_probs=37.3
Q ss_pred eeccCCCCCCcc--ccCCccccC-CC-CcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccCHHHHHHHHHHH
Q 025425 158 ISCPLSGKPITE--LAEPVRSVE-CK-HIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 158 ~~CPIt~~~~~~--l~~Pv~s~~-Cg-H~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~~~ 229 (253)
.+||||+.++.. |.+.+-+.. -. -.=+|+..+.-+..- .++||+ |+..+.-+.|..+. ..+|-++.
T Consensus 9 ~~~PlCG~~L~W~eLIeQML~~en~~ei~kDr~~Fl~~~e~F--~FkCP~--CgEEFyG~~Lp~~E--aeKVFELL 78 (95)
T 2k5c_A 9 AKCPICGSPLKWEELIEEMLIIENFEEIVKDRERFLAQVEEF--VFKCPV--CGEEFYGKTLPRRE--AEKVFELL 78 (95)
T ss_dssp EECSSSCCEECHHHHHHHSTTCSTHHHHTTCHHHHHHHHHHS--EEECTT--TCCEEETTSSCTTT--HHHHHHHH
T ss_pred ccCCcCCCccCHHHHHHHHHhhccHHHHHhhHHHHHHHHHHH--hhcCCC--ccHHHhcccCChHH--HHHHHHHH
Confidence 579999976411 111111110 00 112566666666654 578999 99988878777665 23444444
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=78.25 E-value=2.1 Score=31.40 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=26.7
Q ss_pred eeeccCCCCCCccccCCccccCC----CCcccHHHHHHHHHh
Q 025425 157 NISCPLSGKPITELAEPVRSVEC----KHIYEKNAIQAYIKS 194 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~C----gH~f~k~~I~~~l~~ 194 (253)
.+.|-||.+ .|++--- ..| +|.||--|-..+|+.
T Consensus 15 ~l~CtlC~e---rLEdtHF-VQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 15 PLCCTICHE---RLEDTHF-VQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp SCCCSSSCS---CCSSTTS-EECSSCSSCEECHHHHHHHHHH
T ss_pred eeEeecchh---hhccCce-eeCCCccCCeeeccccHHHHHh
Confidence 689999996 5676543 345 799999999999975
No 84
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=77.22 E-value=0.95 Score=31.95 Aligned_cols=30 Identities=13% Similarity=0.337 Sum_probs=25.5
Q ss_pred eccCCCCCCccccCCccccCCCCcccHHHH
Q 025425 159 SCPLSGKPITELAEPVRSVECKHIYEKNAI 188 (253)
Q Consensus 159 ~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I 188 (253)
.|.+|.++|++|..----..||++||..|.
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs 42 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHS 42 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGS
T ss_pred cccCCCCccCCccccccCCCCCEEEccccc
Confidence 599999999888777766789999999874
No 85
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=77.09 E-value=0.16 Score=40.56 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=38.1
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCc
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVV 216 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~ 216 (253)
...||+|..++ .+.++.....-...|-..++...|..- .+.||..||...+.+.+|.
T Consensus 66 ~~~CP~Cr~~~-~~~~~~~~l~~~~~~~d~~~~~~i~~L--~v~Cpn~GC~~~~~l~~l~ 122 (141)
T 3knv_A 66 PQNCAACVHEG-IYEEGISILESSSAFPDNAARREVESL--PAVCPSDGCTWKGTLKEYE 122 (141)
T ss_dssp CEECHHHHHTT-CCCTTTTEECGGGCEECHHHHHHHHTS--EEECCSTTCCCEEEHHHHH
T ss_pred CCCCCCCCCcc-cccccccccchhhhcccHHHHHHHccc--ccccCCCCCCCEeEHHHHH
Confidence 36899998753 344433222344677777888888754 6899999999877654443
No 86
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=76.83 E-value=0.92 Score=33.38 Aligned_cols=33 Identities=9% Similarity=0.214 Sum_probs=26.1
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAI 188 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I 188 (253)
..-.|.+|..+|++|..---...||++||..|.
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 40 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCL 40 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTS
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHc
Confidence 345799999999877666555689999999874
No 87
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=76.20 E-value=2.9 Score=29.16 Aligned_cols=55 Identities=15% Similarity=0.395 Sum_probs=36.9
Q ss_pred cceeeccCCCCCCccc------------cCCccccCCCCcccHH-HHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITEL------------AEPVRSVECKHIYEKN-AIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l------------~~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
...+.|++|.+.|... ..|+....|+-.|... .+..++... .....|++ |...+.
T Consensus 6 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 75 (96)
T 2dmd_A 6 SGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQI--CPYASR 75 (96)
T ss_dssp CCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSS--SSCEES
T ss_pred CcCeECCCCCCccCCHHHHHHHHHhcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCC--CCCccC
Confidence 3478999999754211 2567777899998654 556666543 23567999 987664
No 88
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=75.31 E-value=0.99 Score=32.59 Aligned_cols=32 Identities=16% Similarity=0.287 Sum_probs=26.3
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
-.|.+|..+|+++..----..||++||..|..
T Consensus 20 ~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 20 THCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred CcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 34999999998887777667899999998843
No 89
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=74.86 E-value=1.1 Score=32.49 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=26.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
...|.+|.++|++|..---...||++||..|..
T Consensus 21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 53 (84)
T 1z2q_A 21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDCSR 53 (84)
T ss_dssp CCBCTTTCCBCCTTSCCEECTTTCCEECTGGGC
T ss_pred CCCCcCcCCccccchhcccccCCCcEEChHHhC
Confidence 346999999998887776667899999998843
No 90
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=73.95 E-value=1.3 Score=32.60 Aligned_cols=32 Identities=9% Similarity=0.089 Sum_probs=26.2
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQ 189 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~ 189 (253)
-.|.+|.++|+++..-.-...||++||..|..
T Consensus 21 ~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~ 52 (90)
T 3t7l_A 21 PNCMNCQVKFTFTKRRHHCRACGKVFCGVCCN 52 (90)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CcCcCCCCcccchhhCccccCCCCEECCcccC
Confidence 35999999998887777667899999998843
No 91
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.84 E-value=1.4 Score=31.89 Aligned_cols=30 Identities=10% Similarity=0.212 Sum_probs=25.1
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNA 187 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~ 187 (253)
..|++|..+|++|..----..||++||..|
T Consensus 15 ~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C 44 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRRSCSNCGNSFCSRC 44 (84)
T ss_dssp SSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred CcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence 359999999988876666668999999987
No 92
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.44 E-value=6.2 Score=27.26 Aligned_cols=54 Identities=15% Similarity=0.428 Sum_probs=35.9
Q ss_pred ceeeccCCCCCCcc------------ccCCccccCCCCcccHH-HHHHHHHhCC----CCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITE------------LAEPVRSVECKHIYEKN-AIQAYIKSKN----ANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~------------l~~Pv~s~~CgH~f~k~-~I~~~l~~~~----~~~~CPv~GC~~~l~ 211 (253)
..+.|++|.+.|.. -..|+....|+-.|... .+..+++... ....|++ |...+.
T Consensus 6 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~--C~~~f~ 76 (95)
T 2yt9_A 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS--CGKGFS 76 (95)
T ss_dssp SCEECSSSCCEESSSHHHHHHHHHSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS--SCCCBS
T ss_pred CCeECCCCCCccCChHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC--ccchhC
Confidence 47899999874421 12466667899998654 5666665421 4578999 987664
No 93
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=71.06 E-value=5.5 Score=28.81 Aligned_cols=37 Identities=16% Similarity=0.423 Sum_probs=17.9
Q ss_pred CCccccCCCCcccH-HHHHHHHHh-----CCCCCCCCCCCCCCCC
Q 025425 172 EPVRSVECKHIYEK-NAIQAYIKS-----KNANARCPVAGCPRKL 210 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k-~~I~~~l~~-----~~~~~~CPv~GC~~~l 210 (253)
.|+....||-.|-. ..+..++.. ......||+ |...+
T Consensus 34 ~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~~--C~~~f 76 (124)
T 2dlq_A 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETF 76 (124)
T ss_dssp CSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECSS--SCCEE
T ss_pred CCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECCC--CCCcc
Confidence 35555566666643 344444432 112345666 66544
No 94
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=70.16 E-value=6.3 Score=29.86 Aligned_cols=46 Identities=17% Similarity=0.465 Sum_probs=30.0
Q ss_pred eeeccCCCCCCccccCC-----ccccCCCC---cccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEP-----VRSVECKH---IYEKNAIQAYIKSKNANARCPVAGCPRKLQVS 213 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P-----v~s~~CgH---~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~ 213 (253)
.++||||+. -| |+|..+.- -|++.++.+.++.+ ..-|. -+..|++.
T Consensus 27 ~l~CPITL~------~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~---~~HPL--SREpit~s 80 (102)
T 2kkx_A 27 AIQCPITLE------QPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG---LPHPL--TREPITAS 80 (102)
T ss_dssp GGCBTTTTB------CCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT---CCCTT--TCCCCCTT
T ss_pred HcCCCeEEe------eCCcceEEecCCCCccceecCHHHHHHHHhcC---CCCCC--ccCCCCHh
Confidence 689999984 34 23333333 39999999999876 23455 44555444
No 95
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=68.10 E-value=1.1 Score=41.30 Aligned_cols=52 Identities=15% Similarity=0.219 Sum_probs=0.0
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHh----CCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKS----KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~----~~~~~~CPv~GC~~~l~ 211 (253)
-.|++|..+|+++..-.-...||++||..|-...+.- +.....|-. |-..+.
T Consensus 376 ~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~--C~~~l~ 431 (434)
T 3mpx_A 376 MMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDG--CFGELK 431 (434)
T ss_dssp ----------------------------------------------------------
T ss_pred CcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHH--HHHHHH
Confidence 4699999998777766666789999999998654421 112334666 665443
No 96
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=67.50 E-value=1.7 Score=29.40 Aligned_cols=27 Identities=22% Similarity=0.567 Sum_probs=15.7
Q ss_pred eeeccCCCCCCccccCCcccc--CCCCcc
Q 025425 157 NISCPLSGKPITELAEPVRSV--ECKHIY 183 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~--~CgH~f 183 (253)
-+.||.|+.++.+-..-..+. .||+.|
T Consensus 10 iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 468999997642222333444 566665
No 97
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=66.69 E-value=1.7 Score=32.93 Aligned_cols=49 Identities=20% Similarity=0.482 Sum_probs=33.0
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCCccC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
..||+|..++ .. ...|-...+...+..- .+.||..||...+...+|...
T Consensus 54 ~~CP~Cr~~~-------~~---~~~~~~~~l~~~i~~l--~v~C~n~gC~~~~~~~~l~~H 102 (118)
T 3hct_A 54 HKCPVDNEIL-------LE---NQLFPDNFAKREILSL--MVKCPNEGCLHKMELRHLEDH 102 (118)
T ss_dssp SBCTTTCCBC-------CG---GGCEECHHHHHHHHTS--EEECSSTTCCCEEEGGGSGGG
T ss_pred CCCCCCCCCc-------CH---HhcccCHHHHHHHccc--eeECCCCCCCCEEeeHHHHHH
Confidence 3899998643 21 2234445677777754 678999999998877766543
No 98
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=66.59 E-value=12 Score=26.45 Aligned_cols=54 Identities=13% Similarity=0.369 Sum_probs=36.2
Q ss_pred ceeeccCCCCCCccc------------cCCccccCCCCcccHH-HHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITEL------------AEPVRSVECKHIYEKN-AIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l------------~~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
..+.|++|.+.|... ..|+....|+-.|-.. .+..++... .....|++ |...+.
T Consensus 16 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 84 (106)
T 2ee8_A 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQE--CGKGFC 84 (106)
T ss_dssp CCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSS--SCCCCS
T ss_pred cCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCC--cCCccc
Confidence 368999999754210 2577777899998654 555565543 24578999 987664
No 99
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=65.79 E-value=6.1 Score=26.32 Aligned_cols=38 Identities=13% Similarity=0.380 Sum_probs=23.3
Q ss_pred CCccccCCCCcccHH-HHHHHHHh--CCCCCCCCCCCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv~GC~~~l~ 211 (253)
.|+....||..|... .+..++.. +.+...|++ |+..+.
T Consensus 28 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 68 (82)
T 2kmk_A 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQV--CGKAFS 68 (82)
T ss_dssp CCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTT--TSCEES
T ss_pred CCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCC--cchhhC
Confidence 456666777777543 55555543 224567998 887653
No 100
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=64.54 E-value=8.4 Score=25.21 Aligned_cols=32 Identities=19% Similarity=0.379 Sum_probs=17.3
Q ss_pred CCCCccc-HHHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYE-KNAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 178 ~CgH~f~-k~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
.||..|. +..+..+++.. .+...|++ |...+.
T Consensus 14 ~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~~~f~ 48 (70)
T 1x5w_A 14 ECSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTK 48 (70)
T ss_dssp SSSCEESSHHHHHHHHGGGCCSCSEECSS--SSCEES
T ss_pred CCCcccCCHHHHHHHHHHcCCCCCEeCCC--CCCccC
Confidence 3333443 23455555442 23467999 887664
No 101
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=64.32 E-value=2.2 Score=26.12 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=11.4
Q ss_pred eeeccCCCCCCccccCCc
Q 025425 157 NISCPLSGKPITELAEPV 174 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv 174 (253)
.|.||||++ .|..|-
T Consensus 5 GFiCP~C~~---~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMK---SLGSAD 19 (34)
T ss_dssp EEECTTTCC---EESSHH
T ss_pred ccCCcHHHH---HcCCHH
Confidence 599999996 566653
No 102
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=62.11 E-value=2.6 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.256 Sum_probs=25.6
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHH
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYI 192 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l 192 (253)
..|..|..+|+++..---...||.+||..|....+
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~ 54 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVG 54 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC--
T ss_pred CcccCcCCccccccccccCCCCCCeeCHHHhCCCC
Confidence 35999999887766555556799999999854433
No 103
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=58.47 E-value=15 Score=26.52 Aligned_cols=60 Identities=18% Similarity=0.484 Sum_probs=37.2
Q ss_pred eeeccCCCCCCccc------------cCCcccc--CCCCcccHH-HHHHHHHh--CCCCCCCCCCCCCCCCC-CCCCc
Q 025425 157 NISCPLSGKPITEL------------AEPVRSV--ECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ-VSKVV 216 (253)
Q Consensus 157 ~~~CPIt~~~~~~l------------~~Pv~s~--~CgH~f~k~-~I~~~l~~--~~~~~~CPv~GC~~~l~-~~~L~ 216 (253)
.+.|++|.+.|... ..|+... .||-.|... .+..+++. +.....||..+|+..+. ...|.
T Consensus 34 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~ 111 (124)
T 1ubd_C 34 VHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLK 111 (124)
T ss_dssp CEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCCCSTTCCCCCSSTTTTH
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceECCCCCCCCccCCHHHHH
Confidence 58899998744110 2455544 399998655 55555543 22467898777998775 44444
No 104
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=58.31 E-value=3 Score=27.30 Aligned_cols=37 Identities=11% Similarity=0.394 Sum_probs=18.6
Q ss_pred CccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 173 Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
|+....||..|.....+..+-.+.++..|+. |+..+.
T Consensus 14 ~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~--C~k~f~ 50 (62)
T 1vd4_A 14 SFKCPVCSSTFTDLEANQLFDPMTGTFRCTF--CHTEVE 50 (62)
T ss_dssp EEECSSSCCEEEHHHHHHHEETTTTEEBCSS--SCCBCE
T ss_pred CccCCCCCchhccHHHhHhhcCCCCCEECCC--CCCccc
Confidence 3333344444544433321111224578999 998765
No 105
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=57.17 E-value=15 Score=26.29 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=22.2
Q ss_pred CccccCCCCcc--cHHHHHHHHHh-CCCCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIY--EKNAIQAYIKS-KNANARCPVAGCPRKLQV 212 (253)
Q Consensus 173 Pv~s~~CgH~f--~k~~I~~~l~~-~~~~~~CPv~GC~~~l~~ 212 (253)
|+....||..| .+..+..+++. ..+...|++ |.+.+..
T Consensus 34 ~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~--Cgk~F~~ 74 (96)
T 2ctd_A 34 SVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHH--CGKQLRS 74 (96)
T ss_dssp CEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSS--SCCCCSS
T ss_pred CcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCC--CCCeeCC
Confidence 44444455556 45566666543 224678999 8887643
No 106
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=55.61 E-value=12 Score=22.00 Aligned_cols=32 Identities=13% Similarity=0.344 Sum_probs=17.5
Q ss_pred CCccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|.+ ..+..+++.. .+...||.
T Consensus 9 k~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~ 43 (45)
T 2epq_A 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43 (45)
T ss_dssp CSSEETTTTEECSCHHHHHHHHHHHSCCCCCCCCC
T ss_pred CCCcCCCCCcccCCHHHHHHHHHHccCCCCCCCcC
Confidence 34444455555544 4455555432 35678999
No 107
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=54.85 E-value=5.2 Score=32.76 Aligned_cols=9 Identities=44% Similarity=1.076 Sum_probs=6.5
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
+-.||+ |+.
T Consensus 153 p~~CP~--Cg~ 161 (170)
T 3pwf_A 153 PEYCPV--CGA 161 (170)
T ss_dssp CSBCTT--TCC
T ss_pred CCCCCC--CCC
Confidence 457999 775
No 108
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=54.45 E-value=3.6 Score=28.82 Aligned_cols=11 Identities=27% Similarity=0.830 Sum_probs=8.5
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||+|+.++
T Consensus 10 iL~CP~ck~~L 20 (67)
T 2jny_A 10 VLACPKDKGPL 20 (67)
T ss_dssp CCBCTTTCCBC
T ss_pred HhCCCCCCCcC
Confidence 47899998754
No 109
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=53.22 E-value=4.9 Score=33.81 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=6.6
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
+..||+ |+.
T Consensus 186 p~~CP~--C~~ 194 (202)
T 1yuz_A 186 FEKCPI--CFR 194 (202)
T ss_dssp CSBCTT--TCC
T ss_pred CCCCCC--CCC
Confidence 478999 654
No 110
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=52.67 E-value=4.3 Score=28.54 Aligned_cols=11 Identities=27% Similarity=0.948 Sum_probs=8.3
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||.|+.++
T Consensus 8 iL~CP~ck~~L 18 (69)
T 2pk7_A 8 ILACPICKGPL 18 (69)
T ss_dssp TCCCTTTCCCC
T ss_pred heeCCCCCCcC
Confidence 47899998654
No 111
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=52.60 E-value=4.2 Score=28.55 Aligned_cols=11 Identities=18% Similarity=0.640 Sum_probs=8.3
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||.|+.++
T Consensus 8 iL~CP~ck~~L 18 (68)
T 2jr6_A 8 ILVCPVTKGRL 18 (68)
T ss_dssp CCBCSSSCCBC
T ss_pred heECCCCCCcC
Confidence 47899998654
No 112
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=52.38 E-value=4.1 Score=28.59 Aligned_cols=11 Identities=36% Similarity=0.920 Sum_probs=8.3
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||.|+.++
T Consensus 8 iL~CP~ck~~L 18 (68)
T 2hf1_A 8 ILVCPLCKGPL 18 (68)
T ss_dssp ECBCTTTCCBC
T ss_pred heECCCCCCcC
Confidence 47899998654
No 113
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=49.22 E-value=48 Score=24.55 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=34.0
Q ss_pred eeccCCCCCCccccC--C-ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAE--P-VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~--P-v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-.|-||+.-+.+-.+ | |-...|+.-.||.|..--.+.. ...||+ |...+.
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG--~q~Cpq--CktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREG--TQNCPQ--CKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTS--CSSCTT--TCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhcc--Cccccc--cCCccc
Confidence 468899864322222 2 2335799999999977666653 678999 998664
No 114
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=48.63 E-value=5.8 Score=34.09 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=28.9
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCC-----CCccCHHHHHHHHHHH
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVS-----KVVCDSLLLVDIDEMR 229 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~-----~L~~D~~l~~~I~~~~ 229 (253)
.|++.|..+-+...+... ....||. |+..+.+. +..|+..+.+..+..+
T Consensus 126 ~C~~~~~~~~~~~~~~~~-~~p~C~~--Cgg~lrP~vv~FgE~lp~~~~~~a~~~~~ 179 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESS-DVPLCDD--CNSLIRPNIVFFGENLPQDALREAIGLSS 179 (246)
T ss_dssp TTCCEEEHHHHHHHTTTC-SSCBCTT--TCCBEEEEECCBTSBCCHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhccC-CCCCCCC--CCCccCcceEECCCCCCHHHHHHHHHHHh
Confidence 477778777666655432 3568999 98866543 3344444544444433
No 115
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=48.13 E-value=12 Score=24.80 Aligned_cols=10 Identities=40% Similarity=1.178 Sum_probs=4.6
Q ss_pred CCCCCCCCCC
Q 025425 199 ARCPVAGCPR 208 (253)
Q Consensus 199 ~~CPv~GC~~ 208 (253)
..||..||+.
T Consensus 32 ~~C~~~~C~~ 41 (85)
T 2j7j_A 32 YECPHEGCDK 41 (85)
T ss_dssp EECCSTTCCC
T ss_pred eeCCCCCCcC
Confidence 3454444544
No 116
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=47.92 E-value=5.3 Score=33.18 Aligned_cols=9 Identities=33% Similarity=1.054 Sum_probs=6.3
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
+-.||+ |+.
T Consensus 171 p~~CP~--C~~ 179 (191)
T 1lko_A 171 PELCPA--CAH 179 (191)
T ss_dssp CSBCTT--TCC
T ss_pred CCCCCC--CcC
Confidence 348999 665
No 117
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=46.86 E-value=8.6 Score=24.69 Aligned_cols=27 Identities=19% Similarity=0.568 Sum_probs=14.3
Q ss_pred eeeccCCCC-CCccccCC----ccccCCCCcccH
Q 025425 157 NISCPLSGK-PITELAEP----VRSVECKHIYEK 185 (253)
Q Consensus 157 ~~~CPIt~~-~~~~l~~P----v~s~~CgH~f~k 185 (253)
.+.||.|+. ++ ..+| +....||++|..
T Consensus 5 ~~~CP~C~~~~l--~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 5 QKVCPACESAEL--IYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp CCSCTTTSCCCE--EEETTTTEEEESSSCCBCCC
T ss_pred cEeCcCCCCcce--EEcCCCCeEECcccCCcccc
Confidence 567888875 21 1222 334456666653
No 118
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=46.44 E-value=12 Score=24.86 Aligned_cols=39 Identities=15% Similarity=0.365 Sum_probs=25.5
Q ss_pred CCccccCCCCcccHH-HHHHHHHh--CCCCCCCCCCCCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQV 212 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv~GC~~~l~~ 212 (253)
.|+....||-+|... .+..+++. +.++..|++ |+..+..
T Consensus 3 Kpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~--C~k~F~~ 44 (60)
T 4gzn_C 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFRD 44 (60)
T ss_dssp CCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTT--TCCEESS
T ss_pred CCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCC--CCCCcCC
Confidence 466666777777544 55566543 235678999 9987753
No 119
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=46.31 E-value=4 Score=26.55 Aligned_cols=9 Identities=44% Similarity=0.992 Sum_probs=7.2
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
.+.||+ |+.
T Consensus 30 dw~CP~--Cg~ 38 (46)
T 6rxn_A 30 DWCCPV--CGV 38 (46)
T ss_dssp TCBCTT--TCC
T ss_pred CCcCcC--CCC
Confidence 468999 875
No 120
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=46.10 E-value=33 Score=21.13 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=20.7
Q ss_pred ccccCCCCccc-HHHHHHHHH-hC--CCCCCCCCCCCCCCCC
Q 025425 174 VRSVECKHIYE-KNAIQAYIK-SK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 174 v~s~~CgH~f~-k~~I~~~l~-~~--~~~~~CPv~GC~~~l~ 211 (253)
+....||..|. +..|..+++ .. .++..|++ |...+.
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~--C~k~F~ 52 (54)
T 2eps_A 13 YICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV--WVSGPS 52 (54)
T ss_dssp EECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS--SCCSSC
T ss_pred eECCCCCcccCCHHHHHHHHHHhcCCCCCccCCC--CCCCCC
Confidence 33334444443 345666665 32 24678999 988765
No 121
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=46.03 E-value=5.1 Score=29.20 Aligned_cols=16 Identities=19% Similarity=0.499 Sum_probs=11.9
Q ss_pred eeeccCCCCCCccccCCc
Q 025425 157 NISCPLSGKPITELAEPV 174 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv 174 (253)
.+.||-|+. ..+.+|-
T Consensus 27 ~y~Cp~CG~--~~v~r~a 42 (83)
T 1vq8_Z 27 DHACPNCGE--DRVDRQG 42 (83)
T ss_dssp CEECSSSCC--EEEEEEE
T ss_pred cCcCCCCCC--cceeccC
Confidence 799999997 3455553
No 122
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=45.12 E-value=11 Score=28.86 Aligned_cols=55 Identities=9% Similarity=0.183 Sum_probs=36.9
Q ss_pred cceeeccCCCCCCccc------------cCCccccCCCCcccHH-HHHHHHHh--CCCCCCCCCCCCCCCCC
Q 025425 155 ILNISCPLSGKPITEL------------AEPVRSVECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l------------~~Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv~GC~~~l~ 211 (253)
...|.|++|++.|... ..|.....||-+|... .+..++.. +..+..||+ |+..+.
T Consensus 20 ek~y~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~--C~k~F~ 89 (133)
T 2lt7_A 20 RVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLA--CGKSFI 89 (133)
T ss_dssp EEEEEETTTCCEESCHHHHHHHHHHHHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESS--SCCEES
T ss_pred CcCeECCCCCCCcCCHHHHHHHHHHcCCCCCeeCCccCeecccccchhhhccccCCCccccCCC--CCCCcC
Confidence 3579999999754211 2477778899998765 45555543 224678999 988664
No 123
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=44.54 E-value=6.5 Score=29.55 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=32.7
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
-+.|-.|-. ..+.=| +...|-.|..|+.-+|+.+ -.||+ |...|-
T Consensus 28 ~~nCKsCWf---~~k~LV--~C~dHYLCl~CLtlmL~~S---drCpI--C~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWF---ENKGLV--ECNNHYLCLNCLTLLLSVS---NRCPI--CKMPLP 72 (99)
T ss_dssp CCCCCSSCS---CCSSEE--ECSSCEEEHHHHHHTCSSS---SEETT--TTEECC
T ss_pred cccChhhcc---ccCCee--eecchhhHHHHHHHHHhhc---cCCcc--cCCcCC
Confidence 577887852 223333 3569999999999999865 68999 988663
No 124
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=44.50 E-value=4.3 Score=32.59 Aligned_cols=27 Identities=19% Similarity=0.514 Sum_probs=17.9
Q ss_pred ccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 174 VRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 174 v~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
+++..|||.|+.. . ....||. |+..+.
T Consensus 133 y~C~~Cg~~~~~~--------~-~~~~Cp~--CG~~~~ 159 (165)
T 2lcq_A 133 YVCIGCGRKFSTL--------P-PGGVCPD--CGSKVK 159 (165)
T ss_dssp EEESSSCCEESSC--------C-GGGBCTT--TCCBEE
T ss_pred EECCCCCCcccCC--------C-CCCcCCC--CCCcce
Confidence 4566788888643 1 2347999 987653
No 125
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=44.03 E-value=11 Score=26.49 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=7.0
Q ss_pred ceeeccCCCCC
Q 025425 156 LNISCPLSGKP 166 (253)
Q Consensus 156 ~~~~CPIt~~~ 166 (253)
+.++|+-|+..
T Consensus 27 v~Y~C~~CG~~ 37 (70)
T 1twf_L 27 LKYICAECSSK 37 (70)
T ss_dssp CCEECSSSCCE
T ss_pred EEEECCCCCCc
Confidence 45777777654
No 126
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=43.10 E-value=6.2 Score=27.82 Aligned_cols=11 Identities=18% Similarity=0.597 Sum_probs=8.2
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||.|+.++
T Consensus 8 iL~CP~ck~~L 18 (70)
T 2js4_A 8 ILVCPVCKGRL 18 (70)
T ss_dssp CCBCTTTCCBE
T ss_pred heECCCCCCcC
Confidence 47899998654
No 127
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=42.74 E-value=9 Score=30.95 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=32.5
Q ss_pred eeeccCCCCCCccccCCc-cccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPV-RSVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv-~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
.-.|.+|++||.++.++- ....|+|.+|+.|= .|+... ..+.|-+ |..
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~-~~~~~~-~~W~C~v--C~k 116 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS-HAHPEE-QGWLCDP--CHL 116 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE-ECCSSS-SSCEEHH--HHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhcccc-cccCCC-CcEeeHH--HHH
Confidence 456999999987776664 34479999999874 122222 4566777 763
No 128
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=42.48 E-value=12 Score=27.50 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=22.0
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
.-+|..|.+.+ .|..|+.. .||.+||-.
T Consensus 25 ~~rC~~C~kkv-gl~~~f~C-rCg~~FC~~ 52 (85)
T 1wff_A 25 MKHCFLCGKKT-GLATSFEC-RCGNNFCAS 52 (85)
T ss_dssp CCBCSSSCCBC-SSSSCEEC-TTCCEECTT
T ss_pred CccchhhCCee-cccCCeEc-CCCCEeccc
Confidence 46899999865 44479997 599999974
No 129
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=41.64 E-value=16 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.296 Sum_probs=15.3
Q ss_pred HHHHHHHHh----CCCCCCCCCCCCCCCCC
Q 025425 186 NAIQAYIKS----KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 186 ~~I~~~l~~----~~~~~~CPv~GC~~~l~ 211 (253)
..+..++.. +.++..||. |+..+.
T Consensus 24 ~~l~~H~~~~H~~~~~~~~C~~--C~k~f~ 51 (66)
T 2drp_A 24 SNFCRHYVTSHKRNVKVYPCPF--CFKEFT 51 (66)
T ss_dssp HHHHHHHHHHSSSSCCCEECTT--TCCEES
T ss_pred HHHHHHHHHHcCCCCcCeECCC--CCCccC
Confidence 456666543 224568999 998664
No 130
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=41.15 E-value=12 Score=33.54 Aligned_cols=31 Identities=23% Similarity=0.519 Sum_probs=21.9
Q ss_pred CCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 179 CKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 179 CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
|++.|....+...+... ....||. |+..+.+
T Consensus 167 C~~~~~~~~~~~~i~~~-~~P~C~~--Cgg~lrP 197 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIFSE-VTPKCED--CQSLVKP 197 (323)
T ss_dssp TCCEECHHHHHHHHHTT-CCCBCTT--TCCBEEE
T ss_pred cCccccHHHHHHhhccC-CCCCCcC--CCCccCC
Confidence 88888877666655543 4568999 9886654
No 131
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=40.66 E-value=8.5 Score=33.23 Aligned_cols=49 Identities=16% Similarity=0.370 Sum_probs=26.9
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCC-CCCC-----CCCccCHHHHHHHHHHH
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPR-KLQV-----SKVVCDSLLLVDIDEMR 229 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~-~l~~-----~~L~~D~~l~~~I~~~~ 229 (253)
.|++.|..+-+...+... ....||. |+. .+.+ .+..|+..+....+...
T Consensus 128 ~C~~~~~~~~~~~~~~~~-~~p~C~~--Cgg~~lrP~Vv~FgE~lp~~~~~~a~~~~~ 182 (253)
T 1ma3_A 128 DCHETYDWSEFVEDFNKG-EIPRCRK--CGSYYVKPRVVLFGEPLPQRTLFEAIEEAK 182 (253)
T ss_dssp TTCCEEEGGGTHHHHHTT-CCCCCTT--TCCSCEEEEECCBTSBCCHHHHHHHHHHHH
T ss_pred CCCCcCcHHHHHHHhccC-CCCCCCC--CCCccccceEEEeCCCCCHHHHHHHHHHHH
Confidence 355556555555555543 3578999 988 6654 23344444544444333
No 132
>2jx1_A Myelin transcription factor 1; protein-DNA complex, transcription/DNA complex; HET: DNA; NMR {Mus musculus}
Probab=40.63 E-value=12 Score=22.31 Aligned_cols=11 Identities=36% Similarity=1.132 Sum_probs=9.1
Q ss_pred CCCCCCCCCCC
Q 025425 199 ARCPVAGCPRK 209 (253)
Q Consensus 199 ~~CPv~GC~~~ 209 (253)
..||..||...
T Consensus 2 ~~CPtpGC~g~ 12 (31)
T 2jx1_A 2 LKCPTPGCDGS 12 (31)
T ss_dssp CSCSCTTCCSS
T ss_pred CcCCCCCcccc
Confidence 47999999864
No 133
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=40.40 E-value=11 Score=30.06 Aligned_cols=46 Identities=15% Similarity=0.333 Sum_probs=31.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHHHH--------hCCCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIK--------SKNANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~--------~~~~~~~CPv~GC~~ 208 (253)
...|-+|..- -+=+-...|..+|+..||..-+. ...+.+.||. |..
T Consensus 63 ~d~C~vC~~G----G~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~--C~~ 116 (142)
T 2lbm_A 63 DEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYI--CHP 116 (142)
T ss_dssp BCSCSSSCCC----SSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTT--TCC
T ss_pred CCeecccCCC----CcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeec--ccC
Confidence 3458888752 23334458999999999996542 1236899999 974
No 134
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.23 E-value=8.4 Score=26.45 Aligned_cols=46 Identities=11% Similarity=0.118 Sum_probs=33.6
Q ss_pred cCCccccCCCCcccHHHHHHHHHhC-CCCCCCCCCCCCCCCCCCCCccC
Q 025425 171 AEPVRSVECKHIYEKNAIQAYIKSK-NANARCPVAGCPRKLQVSKVVCD 218 (253)
Q Consensus 171 ~~Pv~s~~CgH~f~k~~I~~~l~~~-~~~~~CPv~GC~~~l~~~~L~~D 218 (253)
..|+....|+..|.+..+..+...- ..+..||. |++.+...+|...
T Consensus 15 ~r~~~C~~C~~~~~~~~L~~H~~~c~~~~~~C~~--C~~~~~~~~l~~H 61 (75)
T 2d9k_A 15 LRLAVCQHCDLELSILKLKEHEDYCGARTELCGN--CGRNVLVKDLKTH 61 (75)
T ss_dssp CCCEECSSSCCEECHHHHHHHHHHHHHCEEECSS--SCCEEETTGGGTH
T ss_pred CcccCCcccChHhhHHHHHHHHhHcCCCceEccc--CCCcCcHHHHHHH
Confidence 3677777788888888888877321 24678999 9998877777654
No 135
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=39.43 E-value=26 Score=20.89 Aligned_cols=35 Identities=11% Similarity=0.105 Sum_probs=19.1
Q ss_pred CCccccCCCCcccH-HHHHHHHHhC--CCCCCCCCCCCCC
Q 025425 172 EPVRSVECKHIYEK-NAIQAYIKSK--NANARCPVAGCPR 208 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv~GC~~ 208 (253)
.|+....||..|-. ..|..+++.. .++..|++ |.+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~--C~k 48 (48)
T 2epr_A 11 KQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGP--SSG 48 (48)
T ss_dssp CSEEETTTTEEESSHHHHHHHGGGSCSCCCCCSCC--CCC
T ss_pred cCeeCCCCCcccCCHHHHHHHHHhcCCCCCccCCC--CCC
Confidence 34444445555544 3455555432 24678999 863
No 136
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=39.30 E-value=2.4 Score=27.81 Aligned_cols=26 Identities=19% Similarity=0.580 Sum_probs=17.7
Q ss_pred ccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCC
Q 025425 176 SVECKHIYEKNAIQAYIKSKNANARCPVAGCPR 208 (253)
Q Consensus 176 s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~ 208 (253)
...||++|..+-+.- -..++||. |+=
T Consensus 6 C~rCg~~fs~~el~~-----lP~IrCpy--CGy 31 (48)
T 4ayb_P 6 CGKCWKTFTDEQLKV-----LPGVRCPY--CGY 31 (48)
T ss_dssp CCCTTTTCCCCCSCC-----CSSSCCTT--TCC
T ss_pred eeccCCCccHHHHhh-----CCCcccCc--cCc
Confidence 457999998753221 14689999 874
No 137
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=39.13 E-value=35 Score=19.86 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=15.6
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-.. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytn_A 12 PYKCNECGKVFTQNSHLARHRGIHTGEKPSGPSS 45 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCC
T ss_pred CeECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCC
Confidence 34444455555443 444454432 24577887
No 138
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.98 E-value=9.4 Score=27.10 Aligned_cols=13 Identities=15% Similarity=0.713 Sum_probs=9.7
Q ss_pred CCCCCCCCCCCCCCC
Q 025425 198 NARCPVAGCPRKLQV 212 (253)
Q Consensus 198 ~~~CPv~GC~~~l~~ 212 (253)
.+.|++ |...+..
T Consensus 54 ~~~C~~--C~k~F~~ 66 (98)
T 2gqj_A 54 ALKCQH--CRKQFKS 66 (98)
T ss_dssp HHSCSS--SCCCCSC
T ss_pred CEECCC--CCCccCC
Confidence 578999 9887643
No 139
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=38.33 E-value=23 Score=23.11 Aligned_cols=37 Identities=16% Similarity=0.469 Sum_probs=20.6
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
|+....|+-.|.. ..+..+++.. .....||+ |...+.
T Consensus 14 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~--C~~~f~ 53 (72)
T 1x6e_A 14 PYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFS 53 (72)
T ss_dssp CEECSSSCCEESSHHHHHHHHHGGGCSCCEECSS--SCCEES
T ss_pred CccCCCCCCccCCHHHHHHHHHhcCCCCCeECCC--CCcccC
Confidence 3444444445543 3455555432 24578999 988664
No 140
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=38.00 E-value=9 Score=33.97 Aligned_cols=32 Identities=25% Similarity=0.591 Sum_probs=18.9
Q ss_pred CCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQV 212 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~ 212 (253)
.|++.|...-+...+... ....||. |+..+.+
T Consensus 144 ~C~~~~~~~~~~~~i~~~-~~P~C~~--Cgg~lrP 175 (285)
T 3glr_A 144 VCQRPFPGEDIRADVMAD-RVPRCPV--CTGVVKP 175 (285)
T ss_dssp TTCCEEEGGGGHHHHHTT-CCCBCTT--TCCBEEE
T ss_pred CCCCcCCHHHHHHHhhcC-CCCCCCC--CCCccCC
Confidence 355556554444444333 4578999 9876654
No 141
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=37.92 E-value=42 Score=19.42 Aligned_cols=31 Identities=13% Similarity=0.185 Sum_probs=15.7
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eop_A 12 PHECRECGKSFSFNSQLIVHQRIHTGENPSGPSS 45 (46)
T ss_dssp SCBCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCC
T ss_pred CeeCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34444455555443 455555432 24567887
No 142
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=37.35 E-value=28 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.430 Sum_probs=20.2
Q ss_pred cccCCCCcccH-HHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 175 RSVECKHIYEK-NAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 175 ~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
....||-.|.. ..+..+++.. ..+..||. |...+.
T Consensus 4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 41 (60)
T 2adr_A 4 VCEVCTRAFARQEHLKRHYRSHTNEKPYPCGL--CNRAFT 41 (60)
T ss_dssp CCTTTCCCBSCHHHHHHHHHTTTSSCSEECTT--TCCEES
T ss_pred cCCCCccccCCHHHHHHHHHHhCCCCCccCCC--CCCccC
Confidence 33445555543 4556666543 23567999 988664
No 143
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=36.50 E-value=24 Score=23.10 Aligned_cols=40 Identities=13% Similarity=0.264 Sum_probs=23.0
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQV 212 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~ 212 (253)
..+.|++|.+.| .. +..+..+++.. .....|++ |...+..
T Consensus 16 ~~~~C~~C~k~f---~~------------~~~l~~H~~~H~~~~~~~C~~--C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASF---RY------------KGNLASHKTVHTGEKPYRCNI--CGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCB---SC------------HHHHHHHHHHHCCCCSEECTT--TCCEESC
T ss_pred CCeECCCCCcee---CC------------HHHHHHHHHHcCCCCCEECCC--CCchhCC
Confidence 357777776532 22 23455555432 23568999 9886643
No 144
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=36.47 E-value=25 Score=21.52 Aligned_cols=34 Identities=18% Similarity=0.383 Sum_probs=19.7
Q ss_pred ccCCCCcccH-HHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 176 SVECKHIYEK-NAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 176 s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
...||-.|.. ..+..+++.. .....|+. |+..+.
T Consensus 4 C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 40 (57)
T 1bbo_A 4 CEECGIRXKKPSMLKKHIRTHTDVRPYHCTY--CNFSFK 40 (57)
T ss_dssp CTTTCCBCSSHHHHHHHHHHTSSCCCEECSS--SSCEES
T ss_pred CCCCcCcCCCHHHHHHHHHhcCCCCCccCCC--CCchhc
Confidence 3445555543 3455565543 23567999 988664
No 145
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=36.24 E-value=45 Score=19.34 Aligned_cols=31 Identities=13% Similarity=0.285 Sum_probs=16.1
Q ss_pred CccccCCCCcccHH-HHHHHHH-hC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIK-SK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~-~~--~~~~~CPv 203 (253)
|+....||..|-.. .+..+++ .. .++..|+.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~ 46 (47)
T 2epx_A 12 PYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46 (47)
T ss_dssp SBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCC
T ss_pred CEECCccCchhCChHHHHHHhHhhcCCCCCCCCCC
Confidence 44444455555543 4555555 22 24567887
No 146
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=36.20 E-value=28 Score=27.27 Aligned_cols=12 Identities=25% Similarity=0.620 Sum_probs=5.7
Q ss_pred CccccCCCCccc
Q 025425 173 PVRSVECKHIYE 184 (253)
Q Consensus 173 Pv~s~~CgH~f~ 184 (253)
|+....||-.|.
T Consensus 105 ~~~C~~C~~~f~ 116 (190)
T 2i13_A 105 PYACPECGKSFS 116 (190)
T ss_dssp CEECTTTCCEES
T ss_pred CCcCCCCCCccC
Confidence 444444555553
No 147
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=36.11 E-value=24 Score=26.03 Aligned_cols=31 Identities=23% Similarity=0.433 Sum_probs=23.4
Q ss_pred CCCCCCCCCCC-CCCCCCCccCHHHHHHHHHHHH
Q 025425 198 NARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 198 ~~~CPv~GC~~-~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
..+||+ |.+ .|.-++-.-...|+.+|.++..
T Consensus 23 ~LRCpv--CqnqsI~dSnA~iA~dlR~~Vre~l~ 54 (90)
T 2kw0_A 23 ELRCPK--CQNNSIADSNSMIATDLRQKVYELMQ 54 (90)
T ss_dssp SSBCSC--TTSCTTTSCCCHHHHHHHHHHHHHHH
T ss_pred cCcCCC--CCCCchhhcCcHHHHHHHHHHHHHHH
Confidence 589999 987 6766666666677888888776
No 148
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.73 E-value=43 Score=19.37 Aligned_cols=31 Identities=6% Similarity=0.103 Sum_probs=16.2
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eq4_A 12 LYNCKECGKSFSRAPCLLKHERLHSGEKPSGPSS 45 (46)
T ss_dssp CCCBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCC
T ss_pred CeECCCCCCccCchHHHHHHHHhcCCCCCCCCCC
Confidence 44444455555443 455555432 24578887
No 149
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=35.55 E-value=40 Score=19.62 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=16.6
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|... .+..+++.. .++..|++
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eq0_A 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGPSS 45 (46)
T ss_dssp CCEECTTTCCEESSHHHHHHHHTTTCCCCCSCCSC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 344444455555544 455555432 24567887
No 150
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=35.42 E-value=39 Score=19.68 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=16.3
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ema_A 12 RYKCNECGKVFSRNSQLSQHQKIHTGEKPSGPSS 45 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHTGGGCCCCCSSSC
T ss_pred CcCCCCCcchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 44444455555443 455555432 24578987
No 151
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=35.36 E-value=40 Score=19.56 Aligned_cols=31 Identities=10% Similarity=0.179 Sum_probs=15.5
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|... .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2el4_A 12 PYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSS 45 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHGGGSSSCCCSCCTT
T ss_pred ceECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 33334444455443 444554432 24567887
No 152
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=35.18 E-value=8.7 Score=28.86 Aligned_cols=11 Identities=18% Similarity=0.486 Sum_probs=8.3
Q ss_pred eeeccCCCCCC
Q 025425 157 NISCPLSGKPI 167 (253)
Q Consensus 157 ~~~CPIt~~~~ 167 (253)
-+.||+|+.|+
T Consensus 8 ILaCP~cK~pL 18 (97)
T 2k5r_A 8 LLCSPDTRQPL 18 (97)
T ss_dssp SCCCCTTSSCC
T ss_pred heECCCCCCcc
Confidence 36899998654
No 153
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.99 E-value=49 Score=19.18 Aligned_cols=32 Identities=6% Similarity=0.297 Sum_probs=16.7
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|.+. .+..+++.. .++..|++
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2epz_A 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSS 45 (46)
T ss_dssp CSBCCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCC
T ss_pred CCeECCCCCceeCCHHHHHHHHHHhCCCCCCCCCC
Confidence 344444555555543 445555432 24567887
No 154
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.96 E-value=18 Score=25.16 Aligned_cols=28 Identities=11% Similarity=0.184 Sum_probs=21.2
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
..-+|..|.+.+.++ |+.. .||.+||-.
T Consensus 14 ~~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT--GFMC-RCGTTFCGS 41 (64)
T ss_dssp SCCCCTTTCCCCCTT--CEEC-SSSCEECTT
T ss_pred cCCcChhhCCccCcc--CEEe-ecCCEeccc
Confidence 357899999865333 7886 699999964
No 155
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.90 E-value=47 Score=19.25 Aligned_cols=31 Identities=6% Similarity=0.094 Sum_probs=15.8
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..++... .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eoq_A 12 PFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPSS 45 (46)
T ss_dssp SCCCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCC
T ss_pred CcCCCcCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 4444445555544 3455555432 24567887
No 156
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.79 E-value=48 Score=19.17 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=15.8
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-.. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytr_A 12 PYKCNECGKAFSQTSKLARHQRIHTGEKPSGPSS 45 (46)
T ss_dssp TTCCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCC
T ss_pred CcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence 44444455555443 455555432 24567887
No 157
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=34.72 E-value=11 Score=29.79 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=22.7
Q ss_pred eeeccCCCCCCccccCC-ccccCCCCcccHHH
Q 025425 157 NISCPLSGKPITELAEP-VRSVECKHIYEKNA 187 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~P-v~s~~CgH~f~k~~ 187 (253)
.-.|.+|+++|.++.++ .....|.|.+|+.|
T Consensus 55 ~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C 86 (134)
T 1zbd_B 55 VNRCILCGEQLGMLGSASVVCEDCKKNVCTKC 86 (134)
T ss_dssp SSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred CccccccCCCcccccCCCCCCCCCCccccccc
Confidence 34699999988655543 34457999999876
No 158
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.44 E-value=50 Score=19.18 Aligned_cols=31 Identities=10% Similarity=0.255 Sum_probs=15.6
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytq_A 12 PYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCC
T ss_pred CcCCCccChhhCChHHHHHHHHHhCCCCCCCCCC
Confidence 33444455555443 455555432 24567887
No 159
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=34.40 E-value=1.1e+02 Score=25.93 Aligned_cols=48 Identities=15% Similarity=0.282 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhHH-----HHHHHHHHHhhcCCCCChhhHHHHHHHHHhhh
Q 025425 55 QMVKELEDATIQLMEAFGDCTH-----HSAAIQSVGNTYQPGTELTDFKKLLVDEDAKS 108 (253)
Q Consensus 55 ~~vk~le~~v~el~~~~~e~~~-----~~~al~~l~~~y~~~~~~~~f~~~~~~~~~~~ 108 (253)
..||++-+++++|+++-.+... .+++|++-+.+ +..|.|.+-+.+++|
T Consensus 122 ~tIKeIAsaIKklLDAvn~v~~~~~~~~k~~le~~Kre------FVkySKrFS~TLKeY 174 (213)
T 3ajm_A 122 QTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKE------FVKYSKSFSDTLKTY 174 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHH------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH------HHHHhhHhhHHHHHH
Confidence 3445555555555544333322 45555554444 355666666666665
No 160
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.34 E-value=41 Score=19.55 Aligned_cols=31 Identities=10% Similarity=0.278 Sum_probs=15.4
Q ss_pred CccccCCCCcccH-HHHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|-+ ..+..+++. +.++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytk_A 12 PYKCNECGKVFTQNSHLTNHWRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHSSSSCSSCCC
T ss_pred CEeCCcCCCccCCHHHHHHHHHHHCCCCCCCCCC
Confidence 3333344444443 345555543 224678988
No 161
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.32 E-value=51 Score=19.21 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=16.0
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|-+. .+..+++. +.++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytm_A 12 PYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPSS 45 (46)
T ss_dssp SSSBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCC
T ss_pred CcCCCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 44444455555543 34444432 225678987
No 162
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.22 E-value=48 Score=19.26 Aligned_cols=31 Identities=10% Similarity=0.288 Sum_probs=15.8
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|... .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2elz_A 12 PYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCC
T ss_pred CeeCcccCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 44444455555443 444444432 24578887
No 163
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=34.14 E-value=18 Score=25.13 Aligned_cols=27 Identities=15% Similarity=0.327 Sum_probs=20.6
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
.-+|..|.+.+.++ |+.. .||.+||-.
T Consensus 15 ~~rC~~C~kkvgl~--~f~C-rCg~~FC~~ 41 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM--GFKC-KCGSTFCGS 41 (64)
T ss_dssp SCSCTTTCCCCTTS--CEEC-TTSCEECSS
T ss_pred CCcChhhCCccccc--CeEe-ecCCEeccc
Confidence 56899999864333 7886 799999963
No 164
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=34.08 E-value=39 Score=19.57 Aligned_cols=31 Identities=13% Similarity=0.291 Sum_probs=16.2
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eoe_A 12 PYKCNECGKVFTQNSHLANHQRIHTGVKPSGPSS 45 (46)
T ss_dssp SSEETTTTEECSSHHHHHHHHGGGSCCCSCSSCC
T ss_pred CeECCCcChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 44444455555443 455555432 24567887
No 165
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=33.25 E-value=27 Score=21.30 Aligned_cols=32 Identities=9% Similarity=0.379 Sum_probs=17.3
Q ss_pred CCCCcccH-HHHHHHHHh--CCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 178 ~CgH~f~k-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 211 (253)
.||-.|.. ..+..+++. +..+..||+ |+..+.
T Consensus 9 ~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 43 (57)
T 3uk3_C 9 YCGKFFRSNYYLNIHLRTHTGEKPYKCEF--CEYAAA 43 (57)
T ss_dssp TTCCBCSCHHHHHHHHHHHHCCCCEECSS--SSCEES
T ss_pred CCcchhCChHHHHHHHHHcCCCCCcCCCC--CcchhC
Confidence 34444432 345555442 224678999 988654
No 166
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=33.00 E-value=45 Score=19.34 Aligned_cols=31 Identities=10% Similarity=0.266 Sum_probs=15.9
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..||+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ytd_A 12 PYKCSECGKAFHRHTHLNEHRRIHTGYRPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHTCCCSSCSSC
T ss_pred CeECCCCCCeeCChHHHHHHHHHcCCCCCCCCCC
Confidence 34444455555443 455555432 24578987
No 167
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=32.96 E-value=51 Score=19.09 Aligned_cols=31 Identities=6% Similarity=0.158 Sum_probs=15.4
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|... .+..++... .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em0_A 12 TWKCRECDMCFSQASSLRLHQNVHVGEKPSGPSS 45 (46)
T ss_dssp CCCCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSC
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCcCCCC
Confidence 33334455555443 444454432 24577887
No 168
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.93 E-value=45 Score=19.35 Aligned_cols=31 Identities=10% Similarity=0.264 Sum_probs=15.6
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|-+. .+..+++. +.++..||+
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emy_A 12 PYECHECGKAFSRKYQLISHQRTHAGEKPSGPSS 45 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHTTSCCSCSSC
T ss_pred CcCCCCCCcccCcHHHHHHHHHHcCCCCCCCCCC
Confidence 33434455555443 44455443 224678987
No 169
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=32.73 E-value=39 Score=24.59 Aligned_cols=37 Identities=16% Similarity=0.457 Sum_probs=21.4
Q ss_pred CccccCCCCcccHH-HHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
|+....||..|-.. .+..+++...++..|++ |+..+.
T Consensus 74 ~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~--C~k~f~ 111 (129)
T 2wbt_A 74 QFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPV--CKKEFT 111 (129)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHTCCCCBCTT--TCCBCS
T ss_pred CeECCCCCcccCCHhHHHHHHHHCCCCCCCCC--CCcccC
Confidence 44444455555433 45555554235678999 887664
No 170
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.51 E-value=48 Score=19.20 Aligned_cols=31 Identities=10% Similarity=0.275 Sum_probs=15.8
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ene_A 12 PYKCNECGKVFRHNSYLSRHQRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTCCCCCCSCCC
T ss_pred CeECCCCCchhCChHHHHHHHhhcCCCCCCCCCC
Confidence 3444445555544 3455555432 24567887
No 171
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.27 E-value=20 Score=23.07 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=26.9
Q ss_pred cCCccccCCCCcccHHHHHHHHHhC-CCCCCCC-CCCCCCCCC
Q 025425 171 AEPVRSVECKHIYEKNAIQAYIKSK-NANARCP-VAGCPRKLQ 211 (253)
Q Consensus 171 ~~Pv~s~~CgH~f~k~~I~~~l~~~-~~~~~CP-v~GC~~~l~ 211 (253)
..|+....||-.|.+..+..+++.. ..+..|+ . |+..+.
T Consensus 8 ~~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~--C~k~f~ 48 (66)
T 2eod_A 8 KRTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQ--CGVGTV 48 (66)
T ss_dssp CCEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTC--CSCCEE
T ss_pred CCCeeccccCCccCHHHHHHHHHHcCCcCccCCcc--cCcccc
Confidence 3567767788888866777776542 2356799 8 988654
No 172
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.12 E-value=44 Score=19.41 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=15.8
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|... .+..++.. +.++..||+
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emh_A 12 PYICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSS 45 (46)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHHHCSSCSSSCC
T ss_pred CcCCCCCCchhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 44444455555543 34444432 224678987
No 173
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=32.11 E-value=58 Score=18.75 Aligned_cols=31 Identities=10% Similarity=0.251 Sum_probs=15.4
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eov_A 12 PYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCC
T ss_pred CccCCccChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3333344444443 3455555432 24578887
No 174
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=32.10 E-value=28 Score=24.51 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=32.8
Q ss_pred ceeeccCCCCCCccc----------cCCccccCCCCcccHH-HHHHHHHhC-CCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITEL----------AEPVRSVECKHIYEKN-AIQAYIKSK-NANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l----------~~Pv~s~~CgH~f~k~-~I~~~l~~~-~~~~~CPv~GC~~~l~ 211 (253)
..+.|++|.+.|... ..|+....||-.|... .+..++... .....|++ |...+.
T Consensus 15 ~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~--C~~~f~ 80 (107)
T 1wjp_A 15 EVYQCRLCNAKLSSLLEQGSHERLCRNAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLE--CMRTFK 80 (107)
T ss_dssp CCCBCTTTCCBCSSHHHHHHHHHHHHHSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGG--GTEECS
T ss_pred cCeECCCCCCccCCHHHHHHHHHHCCCCccCCCCCCccCCHHHHHHHHHcCCCCCccCcc--ccchhC
Confidence 368999999754110 2466667788888654 444454422 13467888 887553
No 175
>1pxe_A Neural zinc finger transcription factor 1; CCHHC zinc binding domain, neural zinc finger factor-1, DNA binding domain, metal binding protein; NMR {Rattus norvegicus} SCOP: g.73.1.1
Probab=31.80 E-value=21 Score=24.68 Aligned_cols=13 Identities=31% Similarity=1.025 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRK 209 (253)
Q Consensus 197 ~~~~CPv~GC~~~ 209 (253)
....||..||...
T Consensus 16 ~~~~CPtpGC~G~ 28 (63)
T 1pxe_A 16 RESKCPTPGCDGT 28 (63)
T ss_dssp CCCCSCCSSCCCC
T ss_pred ccccCCCCCcCcc
Confidence 3567999999863
No 176
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.69 E-value=49 Score=19.26 Aligned_cols=31 Identities=10% Similarity=0.229 Sum_probs=15.6
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|-+. .+..+++. +.++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytt_A 12 PYQCSECGKSFSGSYRLTQHWITHTREKPSGPSS 45 (46)
T ss_dssp TTCCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCC
T ss_pred CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 34444455555443 34444432 124678988
No 177
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=31.65 E-value=20 Score=25.58 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=20.2
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
.-+|..|.+.+.++ |+... ||.+||-.
T Consensus 25 ~nRC~~CrKkvgL~--gf~Cr-Cg~~FCs~ 51 (74)
T 1wfl_A 25 KNRCFMCRKKVGLT--GFDCR-CGNLFCGL 51 (74)
T ss_dssp TTBCSSSCCBCGGG--CEECT-TSCEECSS
T ss_pred CCcChhhCCccccc--CeecC-CCCEechh
Confidence 56899999865333 78765 99999963
No 178
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=31.61 E-value=47 Score=22.09 Aligned_cols=53 Identities=17% Similarity=0.422 Sum_probs=30.7
Q ss_pred eeeccC--CCCCCcc------------ccCCcccc--CCCCcccHH-HHHHHHHh--CCCCCCCCCCCCCCCCC
Q 025425 157 NISCPL--SGKPITE------------LAEPVRSV--ECKHIYEKN-AIQAYIKS--KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPI--t~~~~~~------------l~~Pv~s~--~CgH~f~k~-~I~~~l~~--~~~~~~CPv~GC~~~l~ 211 (253)
.+.|++ |++.|.. -..|+... .||-.|... .+..++.. +.....||. |+..+.
T Consensus 5 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 76 (89)
T 2wbs_A 5 THTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQK--CDRAFS 76 (89)
T ss_dssp CEECCSTTTCCEESSHHHHHHHHTTSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSS--SSCEES
T ss_pred CeeCCCCCCCCcCCCHHHHHHHHHhcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCcccC
Confidence 678888 8764311 02344443 488888554 45555543 224567998 887553
No 179
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.51 E-value=21 Score=25.44 Aligned_cols=29 Identities=10% Similarity=0.204 Sum_probs=22.0
Q ss_pred cceeeccCCCCCCccccCCccccCCCCcccHH
Q 025425 155 ILNISCPLSGKPITELAEPVRSVECKHIYEKN 186 (253)
Q Consensus 155 ~~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~ 186 (253)
...-+|..|.+.+.++ |+.. .||.+||-.
T Consensus 23 ~~~~RC~~C~kkvgL~--~f~C-rCg~~FCs~ 51 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT--GFKC-RCGSTFCGT 51 (74)
T ss_dssp CCCCBCSSSCCBCTTT--CEEC-TTSCEECTT
T ss_pred ccCccchhhcCccccc--ceEe-ccCCEeccc
Confidence 3467899999865333 8886 799999964
No 180
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=31.36 E-value=52 Score=19.04 Aligned_cols=32 Identities=6% Similarity=0.187 Sum_probs=16.8
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|-+. .|..+++.. .++..|++
T Consensus 11 ~~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ep0_A 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSS 45 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHHTTTSSSCCCSCCC
T ss_pred CCeeCcccCcccCChHHHHHHHHHhCCCCCCCCCC
Confidence 344444555555544 455555432 24567887
No 181
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=31.02 E-value=19 Score=31.67 Aligned_cols=34 Identities=15% Similarity=0.498 Sum_probs=21.1
Q ss_pred CCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~ 213 (253)
.||+.|...-+...+... .....||. |+..+.+.
T Consensus 141 ~C~~~~~~~~~~~~~~~~~~~~~P~C~~--Cgg~lrP~ 176 (289)
T 1q1a_A 141 GCGKVYPPQVFKSKLAEHPIKDFVKCDV--CGELVKPA 176 (289)
T ss_dssp TTCCEECHHHHHHHHTCSSCCSCCBCTT--TCCBEEEE
T ss_pred CCCCCCcHHHHHHHHhhccCCCCccCCC--CCCEECCC
Confidence 467777777666555321 13468999 98866543
No 182
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.99 E-value=51 Score=19.11 Aligned_cols=31 Identities=10% Similarity=0.115 Sum_probs=15.3
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|... .+..+++. +.++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emp_A 12 PYMCNECGKAFSVYSSLTTHQVIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESCHHHHHHHHHHHHCCSCCSCCC
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 33333444444433 44444432 225678987
No 183
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.40 E-value=47 Score=19.30 Aligned_cols=32 Identities=9% Similarity=0.208 Sum_probs=16.4
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|.+. .+..+++.. .++..|++
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emf_A 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPSS 45 (46)
T ss_dssp CCEECSSSCCEESCHHHHHHHGGGTSCSSCSCCCC
T ss_pred CCeECCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 344444455555544 444454432 24567887
No 184
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.31 E-value=2.1 Score=32.43 Aligned_cols=42 Identities=21% Similarity=0.432 Sum_probs=24.0
Q ss_pred ceeeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCC
Q 025425 156 LNISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQ 211 (253)
Q Consensus 156 ~~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~ 211 (253)
.+..||.|..++ . + .=|+.+|..|=..|. ....||- |.+.|.
T Consensus 31 M~~~CP~Cq~eL---~-~----~g~~~hC~~C~~~f~----~~a~CPd--C~q~Le 72 (101)
T 2jne_A 31 MELHCPQCQHVL---D-Q----DNGHARCRSCGEFIE----MKALCPD--CHQPLQ 72 (101)
T ss_dssp CCCBCSSSCSBE---E-E----ETTEEEETTTCCEEE----EEEECTT--TCSBCE
T ss_pred ccccCccCCCcc---e-e----cCCEEECccccchhh----ccccCcc--hhhHHH
Confidence 468899999643 2 2 123444555522221 1357999 988764
No 185
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=30.13 E-value=55 Score=18.93 Aligned_cols=31 Identities=6% Similarity=0.200 Sum_probs=15.6
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||-.|.. ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eml_A 12 PYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGGSSCCCSCSSC
T ss_pred CeeCCCcCCccCCHHHHHHHHHHhcCCCCCCCCC
Confidence 3333344444444 3455555432 24577887
No 186
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.93 E-value=55 Score=18.95 Aligned_cols=31 Identities=10% Similarity=0.192 Sum_probs=15.9
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..++... ..+..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ep2_A 12 PYECSICGKSFTKKSQLHVHQQIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHTTSSCCSCCSCC
T ss_pred CcCCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444443 4555555532 24578887
No 187
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.66 E-value=57 Score=18.92 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=15.6
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..+++.. ..+..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em5_A 12 SHQCHECGRGFTLKSHLNQHQRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTSCSCCSSCCC
T ss_pred CeECCcCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444443 3455555432 24577887
No 188
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.64 E-value=56 Score=18.83 Aligned_cols=30 Identities=7% Similarity=0.076 Sum_probs=15.0
Q ss_pred ccccCCCCcccH-HHHHHHHHh--CCCCCCCCC
Q 025425 174 VRSVECKHIYEK-NAIQAYIKS--KNANARCPV 203 (253)
Q Consensus 174 v~s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv 203 (253)
+....||..|.. ..+..+++. +.++..|++
T Consensus 13 ~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emm_A 13 HKCNECGKSFIQSAHLIQHQRIHTGEKPSGPSS 45 (46)
T ss_dssp EECSSSCCEESSHHHHHHHHHHHSCCCTTSSSC
T ss_pred eeCCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 333344444443 345555543 224678887
No 189
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=29.58 E-value=57 Score=18.79 Aligned_cols=32 Identities=9% Similarity=0.173 Sum_probs=16.7
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|... .+..+++.. .++..|++
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em9_A 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPSS 45 (46)
T ss_dssp CSEECSSSCCEESSHHHHHHHGGGGTSCCCCSTTC
T ss_pred cCeECCccccccCChHHHHHHHHHhCCCCCCCCCC
Confidence 344444555555543 444454432 24567887
No 190
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=29.58 E-value=53 Score=19.07 Aligned_cols=17 Identities=12% Similarity=-0.044 Sum_probs=8.9
Q ss_pred HHHHHHHh--CCCCCCCCC
Q 025425 187 AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 187 ~I~~~l~~--~~~~~~CPv 203 (253)
.+..+++. +.++..|++
T Consensus 27 ~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ely_A 27 ALNVHHKLHTGEKPSGPSS 45 (46)
T ss_dssp HHHHHHHHHSCCSSCSCCC
T ss_pred HHHHHHHHcCCCCCCCCCC
Confidence 34444433 224577887
No 191
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=29.45 E-value=69 Score=18.51 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=14.6
Q ss_pred ccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 174 VRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 174 v~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
+....||-.|.+. .+..+++. +.++..|+.
T Consensus 13 ~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2emk_A 13 YECKECGKAFSQTTHLIQHQRVHTGEKPSGPSS 45 (46)
T ss_dssp CBCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCC
T ss_pred eECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 3333444444433 45555543 224677887
No 192
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.44 E-value=79 Score=22.23 Aligned_cols=9 Identities=11% Similarity=-0.245 Sum_probs=5.3
Q ss_pred eeccCCCCC
Q 025425 158 ISCPLSGKP 166 (253)
Q Consensus 158 ~~CPIt~~~ 166 (253)
+.|++|.+.
T Consensus 51 ~~C~~C~~~ 59 (115)
T 2dmi_A 51 ETDNNNPKR 59 (115)
T ss_dssp CCCCCCCSC
T ss_pred ccCCCCCcc
Confidence 347777653
No 193
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.36 E-value=58 Score=18.81 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=15.8
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||-.|... .+..++... .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytj_A 12 PYICAECGKAFTIRSNLIKHQKIHTKQKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHTSCCCCSSCSC
T ss_pred CeECCCCChhhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 33334455555443 455555432 24577887
No 194
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.34 E-value=51 Score=19.08 Aligned_cols=31 Identities=10% Similarity=0.095 Sum_probs=15.0
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|... .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2em7_A 12 PYKCEECGKGFICRRDLYTHHMVHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESCHHHHHHHGGGGTTCCCSSTTC
T ss_pred CccCCCccchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 33333444454443 444444332 24567887
No 195
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=29.32 E-value=56 Score=18.83 Aligned_cols=31 Identities=6% Similarity=0.058 Sum_probs=15.6
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..+++.. ..+..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2eme_A 12 PYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHGGGCCCSCCSSCC
T ss_pred CeECCCCChhhCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3333344444443 3555555432 24577887
No 196
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.60 E-value=49 Score=19.16 Aligned_cols=32 Identities=13% Similarity=0.242 Sum_probs=16.7
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|.+. .+..+++.. .++..|++
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ysp_A 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGPSS 45 (46)
T ss_dssp CSEEETTTTEEESCHHHHHHHHTTSCSCCSSCCSC
T ss_pred CCeECCCCCCccCCHHHHHHHHHhhCCCCCCCCCC
Confidence 344444555555543 455555432 24577887
No 197
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=28.53 E-value=8.9 Score=25.68 Aligned_cols=9 Identities=33% Similarity=0.767 Sum_probs=7.1
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
.+.||+ |+.
T Consensus 36 dw~CP~--Cga 44 (55)
T 2v3b_B 36 DWVCPD--CGV 44 (55)
T ss_dssp TCCCTT--TCC
T ss_pred CCcCCC--CCC
Confidence 468999 775
No 198
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.42 E-value=60 Score=18.80 Aligned_cols=31 Identities=13% Similarity=0.298 Sum_probs=15.2
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||-.|... .+..++.. +.++..|+.
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eoo_A 12 PYGCNECGKNFGRHSHLIEHLKRHFREKSSGPSS 45 (46)
T ss_dssp CEECSSSCCEESSHHHHHHHHHHHHSTTSSCCSC
T ss_pred CEEccccCcccCCHHHHHHHHHHHcCCCCCCCCC
Confidence 33334445555443 34444432 224678887
No 199
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.35 E-value=63 Score=18.71 Aligned_cols=31 Identities=16% Similarity=0.249 Sum_probs=15.4
Q ss_pred CccccCCCCcccH-HHHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|.. ..|..+++. +.++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2em8_A 12 PYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHHCCCCCCSCC
T ss_pred CeECcccCchhCCHHHHHHHHHHHcCCCCCCCCC
Confidence 3333344444443 345555543 224678987
No 200
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.97 E-value=62 Score=18.70 Aligned_cols=31 Identities=13% Similarity=0.114 Sum_probs=15.6
Q ss_pred CccccCCCCcccH-HHHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv 203 (253)
|+....||-.|.. ..+..+++. +.++..|+.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2yso_A 12 SHQCRECGEIFFQYVSLIEHQVLHMGQKNSGPSS 45 (46)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHSCCSCCCTTC
T ss_pred CEEccccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333444445543 345555443 224678887
No 201
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.86 E-value=61 Score=18.50 Aligned_cols=31 Identities=6% Similarity=0.181 Sum_probs=15.8
Q ss_pred CccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|... .+..+++. +.++..|++
T Consensus 10 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 43 (44)
T 2emx_A 10 PFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSS 43 (44)
T ss_dssp CEECSSSSCEESSHHHHHHHHHHHTSSCSCSCCC
T ss_pred CccCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 44444455555543 44444443 224577887
No 202
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=27.84 E-value=82 Score=21.33 Aligned_cols=53 Identities=17% Similarity=0.387 Sum_probs=32.7
Q ss_pred eeeccC--CCCCCcc------------ccCCcccc--CCCCcccHH-HHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 157 NISCPL--SGKPITE------------LAEPVRSV--ECKHIYEKN-AIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPI--t~~~~~~------------l~~Pv~s~--~CgH~f~k~-~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
.+.|++ |.+.|.. -..|+... .|+..|... .+..+++.. .....|++ |...+.
T Consensus 15 ~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 86 (100)
T 2ebt_A 15 IHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV--CNRSFS 86 (100)
T ss_dssp CEECCSSSCCCEESCHHHHHHHHHHHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSCBCSS--SCCBCS
T ss_pred ceEcCCCCCCCcccCHHHHHHHHHHhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCeECCC--CcCccC
Confidence 578887 8864310 12455543 589888665 455555432 24578999 988664
No 203
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=27.69 E-value=60 Score=18.80 Aligned_cols=31 Identities=6% Similarity=0.187 Sum_probs=15.8
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2el6_A 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPSS 45 (46)
T ss_dssp SEECSSSSCEESSHHHHHHHHGGGCCSSCCSCCC
T ss_pred CeECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 3444445555544 3455555432 24567887
No 204
>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Probab=27.57 E-value=69 Score=24.88 Aligned_cols=35 Identities=20% Similarity=0.557 Sum_probs=19.9
Q ss_pred cCCCCcccHH-HHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 177 VECKHIYEKN-AIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 177 ~~CgH~f~k~-~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
..||-.|... .+..+++.. ..+..||+.||+..+.
T Consensus 110 ~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~ 147 (190)
T 1tf6_A 110 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFS 147 (190)
T ss_dssp SSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCS
T ss_pred CCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhc
Confidence 4577777544 444454432 1346677767776553
No 205
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=26.12 E-value=40 Score=23.22 Aligned_cols=12 Identities=25% Similarity=0.706 Sum_probs=7.5
Q ss_pred CCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKL 210 (253)
Q Consensus 197 ~~~~CPv~GC~~~l 210 (253)
..++||. |+..|
T Consensus 37 ~~iRC~~--CG~RI 48 (63)
T 3h0g_L 37 EVIRCRE--CGHRV 48 (63)
T ss_dssp SCCCCSS--SCCCC
T ss_pred CceECCC--CCcEE
Confidence 4578888 55533
No 206
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=25.97 E-value=37 Score=24.01 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=16.7
Q ss_pred HHHHHHHHhC--CCCCCCCCCCCCCCCCC
Q 025425 186 NAIQAYIKSK--NANARCPVAGCPRKLQV 212 (253)
Q Consensus 186 ~~I~~~l~~~--~~~~~CPv~GC~~~l~~ 212 (253)
..+..+++.. .+++.|++ |...+..
T Consensus 42 ~~L~~H~~~H~~~k~~~C~~--C~k~F~~ 68 (85)
T 2lv2_A 42 GAQERHLRLLHAAQVFPCKY--CPATFYS 68 (85)
T ss_dssp HHHHHHHHTTSCSSSEECTT--SSCEESS
T ss_pred HHHhhhhhhccCCCccCCCC--CCCEeCC
Confidence 4667776643 24568999 9987653
No 207
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.77 E-value=33 Score=22.58 Aligned_cols=13 Identities=15% Similarity=0.667 Sum_probs=9.4
Q ss_pred CCCCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRKLQ 211 (253)
Q Consensus 197 ~~~~CPv~GC~~~l~ 211 (253)
..+.|++ |...+.
T Consensus 37 ~~~~C~~--C~k~f~ 49 (78)
T 2d9h_A 37 LRFPCEF--CGKRFE 49 (78)
T ss_dssp CCEECTT--TCCEES
T ss_pred cccCCCC--CCchhC
Confidence 4577888 887664
No 208
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.68 E-value=55 Score=18.89 Aligned_cols=31 Identities=10% Similarity=0.258 Sum_probs=15.2
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.. ..+..++... .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2epw_A 12 PCKCTECGKAFCWKSQLIMHQRTHVDDKHSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSSHHHHHHHHHCCSCCCSCCCC
T ss_pred CeeCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333344444443 3455555432 24567887
No 209
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=25.66 E-value=57 Score=18.86 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=15.4
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..++... .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2en1_A 12 PFKCEECGKRFTQNSQLHSHQRVHTGEKPSGPSS 45 (46)
T ss_dssp SEEETTTTEEESSHHHHHHHGGGGSCCCCSCCCC
T ss_pred CeeCCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 33334445555443 444554432 24567887
No 210
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=25.53 E-value=48 Score=22.35 Aligned_cols=34 Identities=18% Similarity=0.503 Sum_probs=17.3
Q ss_pred ccCCCCcccH-HHHHHHHHh--CCCCCCCCCCCCCCCCC
Q 025425 176 SVECKHIYEK-NAIQAYIKS--KNANARCPVAGCPRKLQ 211 (253)
Q Consensus 176 s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv~GC~~~l~ 211 (253)
...||-.|.. ..+..++.. +..+..|+. |...+.
T Consensus 6 C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~--C~k~f~ 42 (88)
T 1llm_C 6 CRICMRNFSRSDHLTTHIRTHTGEKPFACDI--CGRKFA 42 (88)
T ss_dssp CTTTCCEESCHHHHHHHHHHHHCCCCEECTT--TCCEES
T ss_pred CCCCCCccCCHHHHHHHHHHcCCCCCccCCC--CCCccC
Confidence 3344444432 344445442 123567888 887654
No 211
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=25.38 E-value=41 Score=24.42 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=23.0
Q ss_pred CCCCCCCCCCC-CCCCCCCccCHHHHHHHHHHHH
Q 025425 198 NARCPVAGCPR-KLQVSKVVCDSLLLVDIDEMRR 230 (253)
Q Consensus 198 ~~~CPv~GC~~-~l~~~~L~~D~~l~~~I~~~~~ 230 (253)
..+||+ |.+ .|.-++-.-...|+.+|.++..
T Consensus 26 ~LRCp~--Cqnqsi~dSna~iA~dlR~~V~~~l~ 57 (84)
T 2hl7_A 26 ELRCPK--CQNQDIADSNAPIAADLRKQIYGQLQ 57 (84)
T ss_dssp HEECTT--SSSCBTTTCCSHHHHHHHHHHHHHHH
T ss_pred cCcCCC--CCCCchhhcCcHHHHHHHHHHHHHHH
Confidence 478999 987 6666666556677888888776
No 212
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.09 E-value=74 Score=18.26 Aligned_cols=31 Identities=10% Similarity=0.041 Sum_probs=15.3
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||-.|... .+..++... .++..|+.
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2en8_A 12 SHTCDECGKNFCYISALRIHQRVHMGEKCSGPSS 45 (46)
T ss_dssp SEECTTTCCEESSHHHHHHHHTTTCCSCSSCCSC
T ss_pred CeECCCcCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 34444455555443 444454432 24567887
No 213
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.02 E-value=52 Score=21.55 Aligned_cols=37 Identities=11% Similarity=0.373 Sum_probs=19.5
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCCCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPVAGCPRKLQ 211 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv~GC~~~l~ 211 (253)
|+....||..|.. ..|..+++.. .....|++ |...+.
T Consensus 18 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~--C~~~f~ 57 (77)
T 2cot_A 18 RYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDE--CGKAFI 57 (77)
T ss_dssp SSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSS--SCCEES
T ss_pred CEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCC--CCCccC
Confidence 3333444444443 3455555432 13467998 887654
No 214
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.88 E-value=81 Score=18.12 Aligned_cols=31 Identities=16% Similarity=0.275 Sum_probs=15.6
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|... .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2ep3_A 12 PYRCAECGKAFTDRSNLFTHQKIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHTTTTTSCCCCTTC
T ss_pred CeECCCCCchhCCHHHHHHHHHHcCCCCCCCCCC
Confidence 44444455555443 445555432 24567886
No 215
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.67 E-value=1.1e+02 Score=20.45 Aligned_cols=49 Identities=14% Similarity=0.433 Sum_probs=29.9
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHH-HHHHHHHh-CCC--C--------CCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKN-AIQAYIKS-KNA--N--------ARCPVAGCPRKLQ 211 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~-~I~~~l~~-~~~--~--------~~CPv~GC~~~l~ 211 (253)
.+.|.+... ..+..|. ..||..|... .+..+++. ..+ . ..|++ |...+.
T Consensus 13 ~~~c~~~~~--~~~~~~C--~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~--C~k~f~ 73 (95)
T 2ej4_A 13 ELSCKWIDE--AQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPR--EGKSFK 73 (95)
T ss_dssp CCCCCCCCS--SCSSSSC--CCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSS--TTCCCS
T ss_pred CceeEeecC--CcCCCcc--cccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCC--CCcccC
Confidence 577877753 1233343 4788888654 56666654 211 2 68999 988765
No 216
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.47 E-value=76 Score=18.26 Aligned_cols=31 Identities=13% Similarity=0.191 Sum_probs=15.9
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||-.|-. ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~ 45 (46)
T 2enc_A 12 PFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHSCCSSCCSSCC
T ss_pred CcCCCCCCCcCCChHHHHHHHHHhCCCCCCCCCC
Confidence 3443444555543 3455555443 24567887
No 217
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=24.16 E-value=17 Score=25.50 Aligned_cols=12 Identities=33% Similarity=1.060 Sum_probs=9.9
Q ss_pred ceeeccCCCCCC
Q 025425 156 LNISCPLSGKPI 167 (253)
Q Consensus 156 ~~~~CPIt~~~~ 167 (253)
....||+|++||
T Consensus 8 ~~~~CP~Cgkp~ 19 (68)
T 1lv3_A 8 ITVNCPTCGKTV 19 (68)
T ss_dssp CEEECTTTCCEE
T ss_pred CcCcCCCCCCcc
Confidence 467899999875
No 218
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=24.12 E-value=11 Score=26.49 Aligned_cols=9 Identities=33% Similarity=0.981 Sum_probs=7.0
Q ss_pred CCCCCCCCCCC
Q 025425 198 NARCPVAGCPR 208 (253)
Q Consensus 198 ~~~CPv~GC~~ 208 (253)
.+.||+ |..
T Consensus 40 dw~CP~--Cga 48 (70)
T 1dx8_A 40 SFMCPA--CRS 48 (70)
T ss_dssp TCBCTT--TCC
T ss_pred CCcCCC--CCC
Confidence 468999 765
No 219
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=23.97 E-value=20 Score=25.63 Aligned_cols=29 Identities=10% Similarity=0.221 Sum_probs=15.4
Q ss_pred eee-ccCCCCCCccccC----CccccCCCCcccHHH
Q 025425 157 NIS-CPLSGKPITELAE----PVRSVECKHIYEKNA 187 (253)
Q Consensus 157 ~~~-CPIt~~~~~~l~~----Pv~s~~CgH~f~k~~ 187 (253)
.++ ||-|... ++.+ +|....||+.||..|
T Consensus 24 ~~~wCP~C~~~--~~~~~~~~~v~C~~C~~~FC~~C 57 (86)
T 2ct7_A 24 KFLWCAQCSFG--FIYEREQLEATCPQCHQTFCVRC 57 (86)
T ss_dssp CEECCSSSCCC--EECCCSCSCEECTTTCCEECSSS
T ss_pred CEeECcCCCch--heecCCCCceEeCCCCCcccccc
Confidence 454 9966642 2222 234335777777655
No 220
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.91 E-value=50 Score=19.12 Aligned_cols=7 Identities=0% Similarity=-0.230 Sum_probs=5.2
Q ss_pred CCCCCCC
Q 025425 197 ANARCPV 203 (253)
Q Consensus 197 ~~~~CPv 203 (253)
++..|++
T Consensus 39 ~~~~C~~ 45 (46)
T 2yu8_A 39 KPSGPSS 45 (46)
T ss_dssp CCSCSCC
T ss_pred CCCCCCC
Confidence 4678887
No 221
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=23.29 E-value=69 Score=18.45 Aligned_cols=31 Identities=13% Similarity=0.284 Sum_probs=15.7
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-.. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2en6_A 12 PYGCNECGKTFSQKSILSAHQRTHTGEKPSGPSS 45 (46)
T ss_dssp CEEETTTTEEESSHHHHHHHHHHHSSCCCSSSCC
T ss_pred CeECCCCCcccCchHHHHHHHHHcCCCCCCCCCC
Confidence 34444455555443 455555432 24677887
No 222
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=23.16 E-value=94 Score=22.77 Aligned_cols=48 Identities=17% Similarity=0.423 Sum_probs=31.8
Q ss_pred eeeccCCCCCCccccCCccccCCCCcccHHHHHHH--HHh----------C-CCCCCCCCCCCCC
Q 025425 157 NISCPLSGKPITELAEPVRSVECKHIYEKNAIQAY--IKS----------K-NANARCPVAGCPR 208 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~--l~~----------~-~~~~~CPv~GC~~ 208 (253)
+-.|+||..-=..-..|-+ .|+.+|=-.|+..+ ++. + ...+.||. |.+
T Consensus 15 D~~C~VC~~~t~~~l~pCR--vC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~--Cen 75 (89)
T 1wil_A 15 DEMCDVCEVWTAESLFPCR--VCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHY--CDN 75 (89)
T ss_dssp SCCCTTTCCCCSSCCSSCS--SSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTT--TCC
T ss_pred CcccCccccccccceeccc--cccccccHhhcccccccccHHHHHHHHccCCCCCccccc--cch
Confidence 4569998731012234544 79999999999986 221 1 25689999 976
No 223
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.64 E-value=27 Score=31.91 Aligned_cols=34 Identities=15% Similarity=0.498 Sum_probs=19.5
Q ss_pred CCCCcccHHHHHHHHHhC--CCCCCCCCCCCCCCCCCC
Q 025425 178 ECKHIYEKNAIQAYIKSK--NANARCPVAGCPRKLQVS 213 (253)
Q Consensus 178 ~CgH~f~k~~I~~~l~~~--~~~~~CPv~GC~~~l~~~ 213 (253)
.|++.|...-+...+... .....||. |+..+.+.
T Consensus 149 ~C~~~~~~~~~~~~~~~~~~~~~P~Cp~--Cgg~lrP~ 184 (361)
T 1q14_A 149 GCGKVYPPQVFKSKLAEHPIKDFVKCDV--CGELVKPA 184 (361)
T ss_dssp TTCCEECTHHHHHHTTSSSCSCCCBCTT--TCCBEEEE
T ss_pred CCCccCcHHHHHHHHhhcccCCCCCCcC--CCCEeCCC
Confidence 366666665555444321 12368999 98866543
No 224
>2jyd_A F5 domain of myelin transcription factor 1; zinc-finger, MYT1, alternative splicing, developmental protein, differentiation, DNA-binding; NMR {Mus musculus}
Probab=22.64 E-value=36 Score=22.03 Aligned_cols=13 Identities=38% Similarity=1.076 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q 025425 197 ANARCPVAGCPRK 209 (253)
Q Consensus 197 ~~~~CPv~GC~~~ 209 (253)
....||..||...
T Consensus 8 ~~~~CPtpGC~G~ 20 (46)
T 2jyd_A 8 ADLKCPTPGCDGS 20 (46)
T ss_dssp BTTSCSCSSCCSB
T ss_pred cCCcCCCCCcCcc
Confidence 3467999999863
No 225
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=22.61 E-value=77 Score=29.30 Aligned_cols=67 Identities=9% Similarity=0.167 Sum_probs=43.7
Q ss_pred eeeccCCCCCCccccCCcccc--CCCCcccHHHHHHHHHhC-------CCCCCCCCCCCCCCCCCCCCccCHHHHHHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSV--ECKHIYEKNAIQAYIKSK-------NANARCPVAGCPRKLQVSKVVCDSLLLVDIDE 227 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~--~CgH~f~k~~I~~~l~~~-------~~~~~CPv~GC~~~l~~~~L~~D~~l~~~I~~ 227 (253)
...|=||... .+=+... .|...||+.||...+... ...+.|=+ |...-...-|++-..-+.++..
T Consensus 93 ~~yCr~C~~G----g~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~--C~p~p~~~ll~~r~~w~~~~~~ 166 (386)
T 2pv0_B 93 QSYCSICCSG----ETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYL--CLPSSRSGLLQRRRKWRSQLKA 166 (386)
T ss_dssp BCSCTTTCCC----SSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTT--TSSCCEETTEEBCSSHHHHHHH
T ss_pred cccceEcCCC----CeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEE--cCCcchHhhhhhhhhHHHHHHH
Confidence 4568898863 2333333 899999999999988432 25789999 9865434444444444556666
Q ss_pred HH
Q 025425 228 MR 229 (253)
Q Consensus 228 ~~ 229 (253)
+-
T Consensus 167 f~ 168 (386)
T 2pv0_B 167 FY 168 (386)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 226
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=22.57 E-value=48 Score=21.71 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=18.0
Q ss_pred cCCCCcccH-HHHHHHHH-hCC---CCCCCCCCCCCCCCC
Q 025425 177 VECKHIYEK-NAIQAYIK-SKN---ANARCPVAGCPRKLQ 211 (253)
Q Consensus 177 ~~CgH~f~k-~~I~~~l~-~~~---~~~~CPv~GC~~~l~ 211 (253)
..||-.|.. ..+..++. ... ....||+ |...+.
T Consensus 19 ~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~--C~~~f~ 56 (77)
T 2ct1_A 19 YICHARFTQSGTMKMHILQKHTENVAKFHCPH--CDTVIA 56 (77)
T ss_dssp TTTCCEESCHHHHHHHHHHHSSSSCSSEECSS--SSCEES
T ss_pred CCcCchhCCHHHHHHHHHHhcCCCCCccCCCC--CCCccC
Confidence 334444433 45566654 221 3567999 987664
No 227
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.51 E-value=1.1e+02 Score=17.46 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=15.1
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2enf_A 12 PYKCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred CeECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence 34444455555443 444454432 23567876
No 228
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.25 E-value=92 Score=17.91 Aligned_cols=31 Identities=10% Similarity=0.300 Sum_probs=15.2
Q ss_pred CccccCCCCcccH-HHHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-+ ..+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2em2_A 12 PFKCKECGKAFRQNIHLASHLRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECSSSCCEESSHHHHHHHHHHHCCCCSSCSSC
T ss_pred CEECCcCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence 3333444444443 3455554432 24577887
No 229
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=21.94 E-value=31 Score=25.00 Aligned_cols=12 Identities=8% Similarity=0.033 Sum_probs=5.6
Q ss_pred CCCCCCCCCCCCCC
Q 025425 200 RCPVAGCPRKLQVS 213 (253)
Q Consensus 200 ~CPv~GC~~~l~~~ 213 (253)
-|+. |+..++.+
T Consensus 53 FC~~--C~~LiSkk 64 (81)
T 2jrp_A 53 FCQN--GHGLISKK 64 (81)
T ss_dssp CCTT--TTCCCCTT
T ss_pred eecc--CCCEeecc
Confidence 3555 55444443
No 230
>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=21.78 E-value=49 Score=23.48 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=17.1
Q ss_pred eeeccCCCCCCccccCCccccC--CCCcccHHH-HHHHH
Q 025425 157 NISCPLSGKPITELAEPVRSVE--CKHIYEKNA-IQAYI 192 (253)
Q Consensus 157 ~~~CPIt~~~~~~l~~Pv~s~~--CgH~f~k~~-I~~~l 192 (253)
.+.||+-... ..|+.... ||..|.+.. +..++
T Consensus 15 ~~~~~~~~sG----EKPYkC~~~~CgKaFsr~s~L~~H~ 49 (73)
T 1x3c_A 15 SLEFPTRYSP----YRPYRCVHQGCFAAFTIQQNLILHY 49 (73)
T ss_dssp CCCCSSSSCS----SCSCBCCSTTCCCBCSSHHHHHHHH
T ss_pred CccccccccC----CCCeECCCCCcChhHcCHHHHHHHh
Confidence 4556665432 56666543 777776653 33343
No 231
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.77 E-value=52 Score=21.69 Aligned_cols=9 Identities=22% Similarity=0.479 Sum_probs=5.2
Q ss_pred eeeccCCCC
Q 025425 157 NISCPLSGK 165 (253)
Q Consensus 157 ~~~CPIt~~ 165 (253)
.+.|++|.+
T Consensus 15 ~~~C~~C~~ 23 (86)
T 1x6h_A 15 PYACSHCDK 23 (86)
T ss_dssp CEECSSSSC
T ss_pred CCcCCCCCC
Confidence 456666654
No 232
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=21.74 E-value=2.2e+02 Score=20.93 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=16.4
Q ss_pred cCCCCcccHH-HHHHHHHhC--CCCCCCCCCCCCCCC
Q 025425 177 VECKHIYEKN-AIQAYIKSK--NANARCPVAGCPRKL 210 (253)
Q Consensus 177 ~~CgH~f~k~-~I~~~l~~~--~~~~~CPv~GC~~~l 210 (253)
..||..|... .+..+++.. .....|++.+|...+
T Consensus 66 ~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f 102 (155)
T 2rpc_A 66 PREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIF 102 (155)
T ss_dssp TTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEE
T ss_pred CCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCcc
Confidence 3456666433 344444321 234556666666544
No 233
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.41 E-value=93 Score=17.89 Aligned_cols=32 Identities=13% Similarity=0.306 Sum_probs=16.2
Q ss_pred CCccccCCCCcccHH-HHHHHHHh--CCCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKS--KNANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~--~~~~~~CPv 203 (253)
.|+....||..|.+. .+..+++. +.++..||+
T Consensus 11 k~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2em4_A 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGPSS 45 (46)
T ss_dssp SSEECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred cCcCCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence 344444455555543 44455443 224677886
No 234
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.11 E-value=95 Score=17.86 Aligned_cols=32 Identities=9% Similarity=0.209 Sum_probs=17.2
Q ss_pred CCcccc--CCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSV--ECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~--~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+... .||..|.+. .+..+++.. .++..|+.
T Consensus 11 k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 47 (48)
T 2ent_A 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47 (48)
T ss_dssp CCEECCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCC
T ss_pred CCeECCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 344433 566666554 455555432 24567887
No 235
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.07 E-value=82 Score=18.06 Aligned_cols=32 Identities=6% Similarity=0.232 Sum_probs=15.7
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|-+. .+..+++.. .++..||+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (45)
T 2epu_A 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG 45 (45)
T ss_dssp CSEEETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred cCccCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence 344444555555544 444555432 23567774
No 236
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.37 E-value=1.2e+02 Score=17.32 Aligned_cols=31 Identities=10% Similarity=0.233 Sum_probs=15.5
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|.+. .+..+++.. .++..|++
T Consensus 12 ~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2en9_A 12 LFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS 45 (46)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred CEECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence 44444455555443 444554432 24567876
No 237
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=20.19 E-value=2.4e+02 Score=20.05 Aligned_cols=63 Identities=13% Similarity=0.246 Sum_probs=40.1
Q ss_pred HHHhHhhhccchhhHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhhcCC
Q 025425 16 IRNAATTLYNDNNTVIGEIRRALGMIKEIAVDLEKDNQSQMVKELEDATIQLMEAFGDCTHHSAAIQSVGNTYQP 90 (253)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vA~~le~~~~~~~vk~le~~v~el~~~~~e~~~~~~al~~l~~~y~~ 90 (253)
++.-++-+..++..|+ +...+++++ +.+.|.++++.--+--.+..++.....+...+..+...
T Consensus 7 mgkevEnLi~EN~eLl-~TKNaLnvv-----------k~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~e 69 (77)
T 2w83_C 7 MGREVENLILENTQLL-ETKNALNIV-----------KNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRE 69 (77)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666665 345555555 34667777777777777777777777776666666543
No 238
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=20.13 E-value=57 Score=24.31 Aligned_cols=52 Identities=8% Similarity=0.053 Sum_probs=34.6
Q ss_pred eeccCCCCCCccccCCccccCCCCcccHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCC
Q 025425 158 ISCPLSGKPITELAEPVRSVECKHIYEKNAIQAYIKSKNANARCPVAGCPRKLQVSKV 215 (253)
Q Consensus 158 ~~CPIt~~~~~~l~~Pv~s~~CgH~f~k~~I~~~l~~~~~~~~CPv~GC~~~l~~~~L 215 (253)
|+|..|.+++.....+.. ..=|..||+.+....+... -+|.. |...|....+
T Consensus 33 F~C~~C~~~L~~~~~~~~-~~~g~~yC~~cy~~~f~~~---~~C~~--C~~~I~~~~~ 84 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSY-TKSGMILCRNDYIRLFGNS---GAGGS--GGHMGSGGDV 84 (122)
T ss_dssp HCCSSSCCCTTTSEECCE-EETTEEECHHHHHHHHCCC---CSSSC--SSCCSCCEES
T ss_pred CCcCCCCCcccccCCeEE-EECCeeecHHHHHHHcCCC---Ccccc--CCCCcCchhe
Confidence 899999975310113344 4568899999877765432 26877 9998876554
No 239
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.10 E-value=1.1e+02 Score=17.57 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=14.8
Q ss_pred CccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 173 PVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
|+....||..|-+. .+..+++.. .++..||+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2eon_A 12 PYKCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS 45 (46)
T ss_dssp SCBCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred ccCCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence 34444455555443 444444332 24567875
No 240
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.02 E-value=1e+02 Score=17.60 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=15.2
Q ss_pred CccccCCCCcccH-HHHHHHHHh--CCCCCCCCC
Q 025425 173 PVRSVECKHIYEK-NAIQAYIKS--KNANARCPV 203 (253)
Q Consensus 173 Pv~s~~CgH~f~k-~~I~~~l~~--~~~~~~CPv 203 (253)
|+....||..|.+ ..+..+++. +.++..||+
T Consensus 12 ~~~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~ 45 (46)
T 2eor_A 12 PYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS 45 (46)
T ss_dssp SEECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred CccCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence 3343445555543 344445432 224677886
No 241
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=20.01 E-value=2.7e+02 Score=20.57 Aligned_cols=32 Identities=6% Similarity=0.071 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhh
Q 025425 56 MVKELEDATIQLMEAFGDCTHHSAAIQSVGNT 87 (253)
Q Consensus 56 ~vk~le~~v~el~~~~~e~~~~~~al~~l~~~ 87 (253)
.|..|+.....+-.+..+...+..-|+.+.+.
T Consensus 62 eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~ 93 (96)
T 1t3j_A 62 EIDQLEKMQNNSKLLRNKAVQLESELENFSKQ 93 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433333333333334444333
No 242
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.00 E-value=1e+02 Score=17.65 Aligned_cols=32 Identities=6% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCccccCCCCcccHH-HHHHHHHhC--CCCCCCCC
Q 025425 172 EPVRSVECKHIYEKN-AIQAYIKSK--NANARCPV 203 (253)
Q Consensus 172 ~Pv~s~~CgH~f~k~-~I~~~l~~~--~~~~~CPv 203 (253)
.|+....||..|-+. .+..+++.. .++..||+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~ 45 (46)
T 2ytp_A 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGPSS 45 (46)
T ss_dssp CCEECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred CCeECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence 344444455555443 444555432 24567875
Done!