BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025426
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G+IPS++ ++ L+++ L N L G+IP + + LE L L N G IPS LSNCT
Sbjct: 429 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L +SL+ N +G +P+ IG L L +L + N G IP E G+ L L TN
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 119 GSIPSTIFTI-YTLKNVSLGKNKLSGQIPTNICSNLP-FLEFLSLSLNMFHGGIPSTLSN 176
G +P ++ + +L + L N SG I N+C N L+ L L N F G IP TLSN
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 177 CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
C+ L +L L++N SG +P +G+L+KL+ L + N L+GEIP+E + LE L N
Sbjct: 414 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 473
Query: 237 NLQVMI 242
+L I
Sbjct: 474 DLTGEI 479
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 139 NKLSGQIPTNICSNL------PFLE------FLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186
N+LS + P NI S + P + FL +S NM G IP + + YL L+L
Sbjct: 602 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 661
Query: 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
+ND SG++P E+G+L L +L + +N+L G IP+ LT L + L NNL I
Sbjct: 662 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 721
Query: 247 QF 248
QF
Sbjct: 722 QF 723
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G IP T+ L ++ L N LSG IP+++ S L L L L LNM G IP L
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVK 463
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L TL L +ND +G +P + N T L + + NRL GEIP+ G L L L N
Sbjct: 464 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 521
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 93 LRGTIPXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSN 152
L GTIP G IP + + TL+ + L N L+G+IP+ + SN
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SN 485
Query: 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L ++SLS N G IP + L L L+ N FSG +P E+G+ L L + N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 213 RLQGEIP 219
G IP
Sbjct: 546 LFNGTIP 552
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 75 ACDVHSHRVTVLNISSLNLRGTIPXXXXXXXXXXXXXXXXXXXXGSIP-STIFTIYTLKN 133
ACD +T L++S + G +P G +P T+ + LK
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCT-YLRTLSLAYNDFS 191
+ L N+ SG++P ++ + L L LS N F G I P+ N L+ L L N F+
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
G +P + N ++L L++ N L G IP G+L++L L N L+ I L +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G IP + +L+ +SL +NK +G+IP + L L LS N F+G +P +C+
Sbjct: 258 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 315
Query: 179 YLRTLSLAYNDFSGAVPRE-IGNLTKLKVLYIGANRLQGEIPREFGNLT-ELEQFSLPTN 236
L +L+L+ N+FSG +P + + + LKVL + N GE+P NL+ L L +N
Sbjct: 316 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 375
Query: 237 NLQVMIL 243
N IL
Sbjct: 376 NFSGPIL 382
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 28/112 (25%)
Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP------------------- 171
LK++++ NK+SG + + C NL EFL +S N F GIP
Sbjct: 177 LKHLAISGNKISGDVDVSRCVNL---EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 233
Query: 172 ----STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
+S CT L+ L+++ N F G +P L L+ L + N+ GEIP
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIP 283
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 156 LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
L+ L++S N G + +S C L L ++ N+FS +P +G+ + L+ L I N+L
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 233
Query: 216 GEIPREFGNLTELEQFSLPTN 236
G+ R TEL+ ++ +N
Sbjct: 234 GDFSRAISTCTELKLLNISSN 254
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 80/201 (39%), Gaps = 21/201 (10%)
Query: 54 PTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLR---GTIPXXXXXXXXXXXX 110
P L +W+++ C + GV C +VT +++SS L +
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 111 XXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPT----NICSNLPFLEFLSLSLNMF 166
GS+ S +L ++ L +N LSG + T CS L FL S +L+ F
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-F 137
Query: 167 HGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-----NLTKLKVLYIGANRLQGEIPRE 221
G + L L L L+ N SGA +G +LK L I N++ G++ +
Sbjct: 138 PGKVSGGLK-LNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDV--D 192
Query: 222 FGNLTELEQFSLPTNNLQVMI 242
LE + +NN I
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGI 213
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP 171
GSIP + + L + L NKL G+IP + S L L + LS N G IP
Sbjct: 667 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIP 718
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI--CSNLPFLEFLSLSLNMFHGGIPSTL 174
G IP I + L + L N SG IP + C +L +L+ L+ N+F+G IP+ +
Sbjct: 501 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAM 555
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 1/118 (0%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G+IPS++ ++ L+++ L N L G+IP + + LE L L N G IPS LSNCT
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L +SL+ N +G +P+ IG L L +L + N G IP E G+ L L TN
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 71/126 (56%), Gaps = 2/126 (1%)
Query: 119 GSIPSTIFTI-YTLKNVSLGKNKLSGQIPTNICSNLP-FLEFLSLSLNMFHGGIPSTLSN 176
G +P ++ + +L + L N SG I N+C N L+ L L N F G IP TLSN
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 177 CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
C+ L +L L++N SG +P +G+L+KL+ L + N L+GEIP+E + LE L N
Sbjct: 417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476
Query: 237 NLQVMI 242
+L I
Sbjct: 477 DLTGEI 482
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 64/122 (52%), Gaps = 12/122 (9%)
Query: 139 NKLSGQIPTNICSNL------PFLE------FLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186
N+LS + P NI S + P + FL +S NM G IP + + YL L+L
Sbjct: 605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLG 664
Query: 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
+ND SG++P E+G+L L +L + +N+L G IP+ LT L + L NNL I
Sbjct: 665 HNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMG 724
Query: 247 QF 248
QF
Sbjct: 725 QF 726
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G IP T+ L ++ L N LSG IP+++ S L L L L LNM G IP L
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-LSKLRDLKLWLNMLEGEIPQELMYVK 466
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L TL L +ND +G +P + N T L + + NRL GEIP+ G L L L N
Sbjct: 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNN 524
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 93 LRGTIPXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSN 152
L GTIP G IP + + TL+ + L N L+G+IP+ + SN
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL-SN 488
Query: 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L ++SLS N G IP + L L L+ N FSG +P E+G+ L L + N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 213 RLQGEIP 219
G IP
Sbjct: 549 LFNGTIP 555
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 75 ACDVHSHRVTVLNISSLNLRGTIPXXXXXXXXXXXXXXXXXXXXGSIP-STIFTIYTLKN 133
ACD +T L++S + G +P G +P T+ + LK
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCT-YLRTLSLAYNDFS 191
+ L N+ SG++P ++ + L L LS N F G I P+ N L+ L L N F+
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
G +P + N ++L L++ N L G IP G+L++L L N L+ I L +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 4/127 (3%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
G IP + +L+ +SL +NK +G+IP + L L LS N F+G +P +C+
Sbjct: 261 GPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318
Query: 179 YLRTLSLAYNDFSGAVPRE-IGNLTKLKVLYIGANRLQGEIPREFGNLT-ELEQFSLPTN 236
L +L+L+ N+FSG +P + + + LKVL + N GE+P NL+ L L +N
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSN 378
Query: 237 NLQVMIL 243
N IL
Sbjct: 379 NFSGPIL 385
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 28/112 (25%)
Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP------------------- 171
LK++++ NK+SG + + C NL EFL +S N F GIP
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNL---EFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236
Query: 172 ----STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
+S CT L+ L+++ N F G +P L L+ L + N+ GEIP
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIP 286
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 156 LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
L+ L++S N G + +S C L L ++ N+FS +P +G+ + L+ L I N+L
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLS 236
Query: 216 GEIPREFGNLTELEQFSLPTN 236
G+ R TEL+ ++ +N
Sbjct: 237 GDFSRAISTCTELKLLNISSN 257
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP 171
GSIP + + L + L NKL G+IP + S L L + LS N G IP
Sbjct: 670 GSIPDEVGDLRGLNILDLSSNKLDGRIPQAM-SALTMLTEIDLSNNNLSGPIP 721
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 119 GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI--CSNLPFLEFLSLSLNMFHGGIPSTL 174
G IP I + L + L N SG IP + C +L +L+ L+ N+F+G IP+ +
Sbjct: 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD---LNTNLFNGTIPAAM 558
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 31/195 (15%)
Query: 39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDV--HSHRVTVLNISSLNLR 94
D+ ALL +K + +PT +W +T CN W GV CD ++RV L++S LNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 95 GTIPXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNL 153
P IPS++ + L + +G N L G IP I + L
Sbjct: 64 KPYP----------------------IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKL 100
Query: 154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213
L +L ++ G IP LS L TL +YN SG +P I +L L + NR
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 214 LQGEIPREFGNLTEL 228
+ G IP +G+ ++L
Sbjct: 161 ISGAIPDSYGSFSKL 175
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 194 VPREIGNLTKLKVLYIGA-NRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
+P + NL L LYIG N L G IP LT+L + N+ I +FL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
+PT I S+ LE S L G+ L T L LSL+ N LTKL
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHGVFDKL---TQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
+LY+ N+LQ F LT+L++ +L TN L+
Sbjct: 79 TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 4/122 (3%)
Query: 120 SIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
++P+ IF + L+ + + NKL +P + L L L L N P + T
Sbjct: 75 TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 179 YLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
L LSL YN+ ++P+ + LT LK L + N+L+ F LTEL+ L N
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 238 LQ 239
L+
Sbjct: 193 LK 194
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
IPS + T + L L N S + LTKL++LY+ N+LQ F L L
Sbjct: 30 AIPSNIPADT--KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 229 EQFSLPTNNLQVM 241
E + N LQ +
Sbjct: 88 ETLWVTDNKLQAL 100
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 120 SIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
S+P +F ++ L +SLG N+L +P + L L+ L L N T
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L+TL L N +L KLK+L + N
Sbjct: 182 ELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L L +L+L N + T L TL LA N + +LT+L LY+G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 213 RLQGEIPREFGNLTELEQFSLPTNNLQ 239
+L+ F LT+L++ L TN LQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 27/62 (43%)
Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
T L L L N LTKLK L + N+LQ F LT L+ SL TN
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 238 LQ 239
LQ
Sbjct: 167 LQ 168
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 120 SIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
S+PS +F T LK + L N+L IP L L+ LSLS N
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 179 YLRTLSLAYNDFS 191
L+T++L N F
Sbjct: 180 KLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L L +L+L N + T L TL LA N + +LT+L LY+G N
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 213 RLQGEIPREFGNLTELEQFSLPTNNLQ 239
+L+ F LT+L++ L TN LQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 27/62 (43%)
Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
T L L L N LTKLK L + N+LQ F LT L+ SL TN
Sbjct: 107 TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166
Query: 238 LQ 239
LQ
Sbjct: 167 LQ 168
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 120 SIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
S+PS +F T LK + L N+L IP L L+ LSLS N
Sbjct: 121 SLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLG 179
Query: 179 YLRTLSLAYNDFS 191
L+T++L N F
Sbjct: 180 KLQTITLFGNQFD 192
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%)
Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
+P LSN +L + L+ N S + N+T+L L + NRL+ PR F L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 230 QFSLPTNNLQVM 241
SL N++ V+
Sbjct: 106 LLSLHGNDISVV 117
Score = 32.0 bits (71), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 37/88 (42%)
Query: 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210
SN L + LS N + SN T L TL L+YN PR L L++L +
Sbjct: 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110
Query: 211 ANRLQGEIPREFGNLTELEQFSLPTNNL 238
N + F +L+ L ++ N L
Sbjct: 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 51/118 (43%), Gaps = 2/118 (1%)
Query: 120 SIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
S+P+ +F T LK + L +N+L +P + L L +L+L+ N T
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLT 157
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L L L+YN LT+LK L + N+L+ F LT L+ L N
Sbjct: 158 NLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210
+NL L + L G+ L+N TYL +LA+N LT L L +
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYL---NLAHNQLQSLPKGVFDKLTNLTELDLS 165
Query: 211 ANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
N+LQ F LT+L+ L N L+
Sbjct: 166 YNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 30.4 bits (67), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 44/111 (39%), Gaps = 3/111 (2%)
Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
++ ++LG NKL +NL +L L G+ L+N L+ L L N
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQL 121
Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
LT L L + N+LQ F LT L + L N LQ +
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSL 172
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.7 bits (78), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 171 PSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELE 229
P + S T L L + IG L LK L + N + ++P F NLT L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 230 QFSLPTNNLQVMILNFLQF 248
L N +Q + +N LQF
Sbjct: 157 HVDLSYNYIQTITVNDLQF 175
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.3 bits (77), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Query: 171 PSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELE 229
P + S T L L + IG L LK L + N + ++P F NLT L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 230 QFSLPTNNLQVMILNFLQF 248
L N +Q + +N LQF
Sbjct: 152 HVDLSYNYIQTITVNDLQF 170
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 204 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 256
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 257 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 205 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 205 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 34.3 bits (77), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 204 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 256
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 257 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 295
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 205 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 257
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 258 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 296
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 209 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 261
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 300
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 34.3 bits (77), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 45/101 (44%), Gaps = 9/101 (8%)
Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
N++S P I +NL LSLN TL++ T L L LA N S P +
Sbjct: 208 NQISDITPLGILTNLD-----ELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--L 260
Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
LTKL L +GAN++ P LT L L N L+
Sbjct: 261 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 299
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 57/115 (49%), Gaps = 4/115 (3%)
Query: 124 TIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLR 181
++F+ +T L+ ++L +N+++ +I N L L L+LS N F G I S + N L
Sbjct: 293 SVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLE 350
Query: 182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
L L+YN + L LK L + N+L+ F LT L++ L TN
Sbjct: 351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 167 HGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNL 225
H +P+ + T + L L N + P +L LK LY+G+N+L G +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 226 TELEQFSLPTNNLQVM 241
T+L L TN L V+
Sbjct: 88 TQLTVLDLGTNQLTVL 103
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 3/123 (2%)
Query: 120 SIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
SIPS F I +L+ + LG+ K I L L +L+L++ IP+ L+
Sbjct: 150 SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN-LTPLI 207
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L L L+ N S P L L+ L++ +++Q F NL L + +L NNL
Sbjct: 208 KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
Query: 239 QVM 241
++
Sbjct: 268 TLL 270
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 45/111 (40%), Gaps = 3/111 (2%)
Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
++ ++LG NKL +NL +L L G+ L+N L+ L L N
Sbjct: 65 VRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQL 121
Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
LT L LY+ N+LQ F LT L + L N LQ +
Sbjct: 122 QSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSL 172
Score = 32.0 bits (71), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYI 209
+NL L + L G+ L+N TYL Y++ ++P+ + LT L L +
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYL----YLYHNQLQSLPKGVFDKLTNLTRLDL 164
Query: 210 GANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
N+LQ F LT+L+Q SL N L+
Sbjct: 165 DNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN-LTK 203
+PT I + +L+ + SL G+ L T L L L N ++P + N LT
Sbjct: 22 VPTGIPAQTTYLDLETNSLKSLPNGVFDEL---TSLTQLYLGGNKLQ-SLPNGVFNKLTS 77
Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
L L + N+LQ F LT+L++ +L TN LQ +
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 26/121 (21%)
Query: 120 SIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
S+P+ +F + +L + LG NKL +P + + L L +L+LS N +L N
Sbjct: 42 SLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ-----SLPNGV 95
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
+ + LT+LK L + N+LQ F LT+L+ L N L
Sbjct: 96 FDK-------------------LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 239 Q 239
+
Sbjct: 137 K 137
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 51/109 (46%), Gaps = 7/109 (6%)
Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC--TYLRTLSLAY 187
+L+ + + +N +S CS L LSLNM + T+ C ++ L L
Sbjct: 375 SLQQLDISQNSVSYDEKKGDCSWTKSL----LSLNMSSNILTDTIFRCLPPRIKVLDLHS 430
Query: 188 NDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
N ++P+++ L L+ L + +N+L+ F LT L++ L TN
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
+P LS T + L+++ N S +I +L+KL++L I NR+Q F ELE
Sbjct: 15 VPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 230 QFSLPTNNL 238
L N L
Sbjct: 73 YLDLSHNKL 81
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 156 LEFLSLSLNMFHGGIPSTLSNC--TYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGAN 212
LE+L +S N +S C LR L L++NDF V +E GNLTKL L + A
Sbjct: 102 LEYLDVSHNRLQN-----ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
Query: 213 RLQ 215
+ +
Sbjct: 157 KFR 159
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 51/107 (47%), Gaps = 3/107 (2%)
Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND 189
+L+ + + N L+ C+ + L+LS NM G + L ++ L L +N+
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL-HNN 460
Query: 190 FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
++P+++ +L L+ L + +N+L+ F LT L+ L N
Sbjct: 461 RIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLRTLSLA 186
++ LK +L+ IP N+ +++ L L L N+ +PS L + L ++
Sbjct: 122 LHGLKRFRFTTRRLT-HIPANLLTDMRNLSHLELRANIEE--MPSHLFDDLENLESIEFG 178
Query: 187 YNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
N +PR I G + KLK L + +N+L+ F LT L++ L TN
Sbjct: 179 SNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 36/84 (42%)
Query: 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
LP L L L N G P+ ++++ L L N + L +LK L + N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 213 RLQGEIPREFGNLTELEQFSLPTN 236
++ +P F +L L +L +N
Sbjct: 113 QISCVMPGSFEHLNSLTSLNLASN 136
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNF 245
+P EI NL+ L+VL + NRL +P E G+ +L+ F N + + F
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVTTLPWEF 312
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL NNL
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 48/114 (42%), Gaps = 8/114 (7%)
Query: 121 IPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN-MFHGGIPSTLSNCT 178
+P+ F + L + L N L+G I + L LE L LS N P+T
Sbjct: 46 VPAASFQSCRNLTILWLHSNALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLG 104
Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP----REFGNLTEL 228
+L TL L P L L+ LY+ N LQ +P R+ GNLT L
Sbjct: 105 HLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA-LPDNTFRDLGNLTHL 157
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL NNL
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL NNL
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 53 MPYTRLTQLNLDRCELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 103
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL NNL
Sbjct: 104 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 161
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 52 MPYTRLTQLNLDRAELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL NNL
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 121 IPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
+P+ FT Y+ L ++ +G N +S P +C LP L+ L+L N T + CT
Sbjct: 40 LPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98
Query: 180 LRTLSLAYN 188
L L L N
Sbjct: 99 LTELHLMSN 107
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 121 IPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
+P+ FT Y+ L ++ +G N +S P +C LP L+ L+L N T + CT
Sbjct: 50 LPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 108
Query: 180 LRTLSLAYN 188
L L L N
Sbjct: 109 LTELHLMSN 117
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 121 IPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
+P+ FT Y+ L ++ +G N +S P +C LP L+ L+L N T + CT
Sbjct: 45 LPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 103
Query: 180 LRTLSLAYN 188
L L L N
Sbjct: 104 LTELHLMSN 112
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 6/98 (6%)
Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
S P+ + + ++ L GIP T + L L N + P +L
Sbjct: 3 SAGCPSQCSCDQTLVNCQNIRLASVPAGIP------TDKQRLWLNNNQITKLEPGVFDHL 56
Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
L+ LY +N+L F LT+L Q L N+L+
Sbjct: 57 VNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 21/39 (53%)
Query: 174 LSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
L N + LSLA G VP IG LT+LKVL G +
Sbjct: 319 LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH 357
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 7/108 (6%)
Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
L ++ +G NK++ P +NL L +L + N + + + T L+ L++ N
Sbjct: 223 LNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI 277
Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
S + NL++L L++ N+L E G LT L L N++
Sbjct: 278 SDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHI 323
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
+VP I T+ VLY+ NR+ P F LT+L + L N L V+
Sbjct: 22 ASVPTGIPTTTQ--VLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVL 69
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 122 PSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR 181
P+T + L + L + L ++ + L L++L L N T + L
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 155
Query: 182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
L L N S R L L L + NR+ P F +L L L NNL +
Sbjct: 156 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 215
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 1/120 (0%)
Query: 122 PSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR 181
P+T + L + L + L ++ + L L++L L N T + L
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
L L N S R L L L + NR+ P F +L L L NNL +
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Query: 122 PSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP--FLEFLSLSLNMFHGGIPSTLSNCTY 179
P TI L + L +L+ + +C L ++ LSL+ N ST S +
Sbjct: 188 PGCFQTIGKLFALLLNNAQLNPHLTEKLCWELSNTSIQNLSLANNQLLATSESTFSGLKW 247
Query: 180 --LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233
L L L+YN+ L L+ L + N +Q PR F L+ L SL
Sbjct: 248 TNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSFYGLSNLRYLSL 303
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 28.1 bits (61), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 9/118 (7%)
Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
+P T T L L K ++ G LP L L LS N +P L
Sbjct: 52 MPYTRLTQLNLDRCELTKLQVDG--------TLPVLGTLDLSHNQLQS-LPLLGQTLPAL 102
Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
L +++N + + L +L+ LY+ N L+ P +LE+ SL N+L
Sbjct: 103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL 160
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS----NCTYLRTLSLAYNDFSGAVPREIG 199
+ PT +C+ L SL++ H + +T++ C + L+ F+G G
Sbjct: 210 ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKG 269
Query: 200 NLTKLKVLYIGANRLQ-----GEIPREFGNLT 226
KL+VL + +NRL E+P E NLT
Sbjct: 270 LPAKLRVLDLSSNRLNRAPQPDELP-EVDNLT 300
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 27.7 bits (60), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188
+T++ + +G N + +P ++ N+P L L L N N L TLS++ N
Sbjct: 93 HTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 151
Query: 189 DFSGAVPREIGNLTKLKVLYIGANRL 214
+ T L+ L + +NRL
Sbjct: 152 NLERIEDDTFQATTSLQNLQLSSNRL 177
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188
+T++ + +G N + +P ++ N+P L L L N N L TLS++ N
Sbjct: 99 HTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN 157
Query: 189 DFSGAVPREIGNLTKLKVLYIGANRL 214
+ T L+ L + +NRL
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRL 183
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,772,119
Number of Sequences: 62578
Number of extensions: 196062
Number of successful extensions: 595
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 438
Number of HSP's gapped (non-prelim): 121
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)