Query 025426
Match_columns 253
No_of_seqs 223 out of 2990
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 05:40:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.3E-27 5.1E-32 226.0 19.7 206 37-248 28-234 (968)
2 PLN00113 leucine-rich repeat r 99.9 9.1E-22 2E-26 187.8 12.3 168 81-249 140-307 (968)
3 KOG0617 Ras suppressor protein 99.8 2.3E-22 5.1E-27 148.3 -4.7 164 80-250 32-196 (264)
4 KOG4194 Membrane glycoprotein 99.7 1.1E-18 2.3E-23 150.2 5.1 169 82-251 174-342 (873)
5 KOG4194 Membrane glycoprotein 99.7 1.9E-17 4.1E-22 142.6 7.3 169 81-251 78-246 (873)
6 KOG0617 Ras suppressor protein 99.7 5.2E-18 1.1E-22 125.4 -0.8 144 101-250 29-173 (264)
7 KOG4237 Extracellular matrix p 99.6 5.6E-17 1.2E-21 133.7 0.0 170 79-250 65-346 (498)
8 KOG0444 Cytoskeletal regulator 99.6 6.2E-17 1.3E-21 140.7 0.1 130 81-215 103-258 (1255)
9 PLN03150 hypothetical protein; 99.6 1.2E-14 2.7E-19 132.0 14.2 151 34-191 368-528 (623)
10 KOG0444 Cytoskeletal regulator 99.6 9.1E-17 2E-21 139.7 -0.7 157 80-240 77-259 (1255)
11 KOG0472 Leucine-rich repeat pr 99.5 9.7E-16 2.1E-20 126.9 -1.6 156 82-244 389-545 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 1.4E-16 3E-21 131.9 -6.6 159 82-249 138-297 (565)
13 PRK15387 E3 ubiquitin-protein 99.5 1.7E-13 3.6E-18 125.5 9.8 111 130-251 343-470 (788)
14 KOG0618 Serine/threonine phosp 99.4 1.9E-14 4.1E-19 129.8 -0.8 153 80-237 309-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.4 6E-13 1.3E-17 122.3 8.7 146 81-243 220-384 (754)
16 PLN03210 Resistant to P. syrin 99.4 5.2E-12 1.1E-16 122.5 13.6 159 81-244 611-820 (1153)
17 cd00116 LRR_RI Leucine-rich re 99.4 1.3E-13 2.8E-18 115.7 2.4 160 80-239 80-263 (319)
18 KOG4237 Extracellular matrix p 99.4 2.5E-14 5.4E-19 118.3 -2.1 160 79-238 89-358 (498)
19 cd00116 LRR_RI Leucine-rich re 99.4 1.1E-13 2.4E-18 116.2 1.5 163 81-243 108-295 (319)
20 PRK15370 E3 ubiquitin-protein 99.4 1.8E-12 4E-17 119.1 9.5 143 81-240 199-360 (754)
21 PLN03150 hypothetical protein; 99.3 3.5E-12 7.6E-17 116.1 8.6 108 131-239 420-528 (623)
22 KOG0532 Leucine-rich repeat (L 99.3 3.4E-14 7.3E-19 122.3 -4.4 151 84-243 101-251 (722)
23 PF14580 LRR_9: Leucine-rich r 99.3 2E-12 4.4E-17 98.3 5.1 105 82-191 20-126 (175)
24 PF14580 LRR_9: Leucine-rich r 99.3 9.7E-13 2.1E-17 100.1 3.3 126 102-233 16-147 (175)
25 KOG0618 Serine/threonine phosp 99.3 2.7E-13 5.9E-18 122.5 0.2 151 81-236 359-510 (1081)
26 PLN03210 Resistant to P. syrin 99.3 2.3E-11 5E-16 118.0 13.4 127 81-213 589-715 (1153)
27 PRK15387 E3 ubiquitin-protein 99.3 1.8E-11 3.8E-16 112.4 10.4 94 82-192 223-316 (788)
28 KOG0532 Leucine-rich repeat (L 99.3 9.4E-14 2E-18 119.6 -4.6 160 81-250 75-234 (722)
29 COG4886 Leucine-rich repeat (L 99.3 3.3E-12 7.2E-17 110.6 4.0 160 81-248 116-299 (394)
30 COG4886 Leucine-rich repeat (L 99.2 1E-11 2.2E-16 107.6 4.9 153 85-243 97-272 (394)
31 KOG1259 Nischarin, modulator o 99.1 4.2E-12 9E-17 102.1 -1.7 135 103-244 282-417 (490)
32 KOG1259 Nischarin, modulator o 99.1 1.3E-11 2.7E-16 99.4 0.7 131 80-217 283-414 (490)
33 KOG3207 Beta-tubulin folding c 99.1 2E-11 4.3E-16 102.5 0.8 162 80-242 145-317 (505)
34 PF13855 LRR_8: Leucine rich r 99.1 1.1E-10 2.5E-15 73.4 3.1 59 130-189 2-60 (61)
35 PF13855 LRR_8: Leucine rich r 99.0 3E-10 6.5E-15 71.4 3.4 59 179-237 2-60 (61)
36 KOG4579 Leucine-rich repeat (L 98.8 1.8E-10 3.9E-15 82.5 -2.8 79 134-215 58-136 (177)
37 KOG3207 Beta-tubulin folding c 98.8 5.6E-10 1.2E-14 93.9 -2.3 163 79-241 119-286 (505)
38 KOG1909 Ran GTPase-activating 98.6 2E-08 4.4E-13 82.4 2.8 38 81-118 92-133 (382)
39 KOG0531 Protein phosphatase 1, 98.6 7.5E-09 1.6E-13 90.3 -1.1 127 81-215 72-199 (414)
40 KOG4658 Apoptotic ATPase [Sign 98.6 7.4E-08 1.6E-12 90.5 5.1 148 82-233 524-675 (889)
41 KOG1859 Leucine-rich repeat pr 98.5 1.1E-09 2.3E-14 97.6 -7.1 127 82-215 165-292 (1096)
42 KOG4579 Leucine-rich repeat (L 98.5 5.3E-09 1.2E-13 75.1 -3.3 133 83-220 29-164 (177)
43 KOG1909 Ran GTPase-activating 98.4 1.7E-08 3.7E-13 82.9 -2.2 158 81-238 120-310 (382)
44 KOG1859 Leucine-rich repeat pr 98.4 3.2E-09 6.9E-14 94.6 -7.0 126 106-239 165-292 (1096)
45 KOG1644 U2-associated snRNP A' 98.4 5.6E-07 1.2E-11 68.8 5.7 103 106-211 43-149 (233)
46 KOG2982 Uncharacterized conser 98.4 1.6E-07 3.5E-12 75.9 2.6 161 81-241 71-264 (418)
47 KOG0531 Protein phosphatase 1, 98.4 3.5E-08 7.6E-13 86.1 -1.4 154 80-241 94-270 (414)
48 KOG4658 Apoptotic ATPase [Sign 98.4 2.7E-07 5.8E-12 86.8 4.2 131 103-237 521-653 (889)
49 PF12799 LRR_4: Leucine Rich r 98.4 5.6E-07 1.2E-11 52.2 3.7 40 202-242 1-40 (44)
50 KOG3665 ZYG-1-like serine/thre 98.3 4.6E-07 1E-11 83.2 3.3 142 105-248 122-272 (699)
51 KOG1644 U2-associated snRNP A' 98.2 1.9E-06 4.1E-11 66.0 5.3 106 128-236 41-150 (233)
52 PF12799 LRR_4: Leucine Rich r 98.2 1.9E-06 4.1E-11 50.0 3.6 36 130-167 2-37 (44)
53 PF08263 LRRNT_2: Leucine rich 98.1 4.3E-06 9.3E-11 48.3 4.0 40 37-77 2-43 (43)
54 KOG2120 SCF ubiquitin ligase, 98.1 9.7E-08 2.1E-12 77.2 -5.1 85 83-167 187-273 (419)
55 PRK15386 type III secretion pr 98.0 2.6E-05 5.6E-10 66.9 7.5 71 81-165 52-123 (426)
56 PF13306 LRR_5: Leucine rich r 97.9 4.9E-05 1.1E-09 54.9 6.8 105 100-210 7-111 (129)
57 COG5238 RNA1 Ran GTPase-activa 97.9 1.1E-05 2.4E-10 64.8 3.4 136 101-237 88-253 (388)
58 KOG3665 ZYG-1-like serine/thre 97.9 4.9E-06 1.1E-10 76.6 1.2 136 81-219 122-267 (699)
59 PF13306 LRR_5: Leucine rich r 97.8 9.5E-05 2.1E-09 53.4 6.8 122 123-251 6-127 (129)
60 PRK15386 type III secretion pr 97.8 9.9E-05 2.1E-09 63.4 7.7 119 101-236 48-187 (426)
61 KOG2982 Uncharacterized conser 97.6 3.9E-05 8.5E-10 62.4 3.0 165 68-232 83-285 (418)
62 KOG2123 Uncharacterized conser 97.6 4.4E-06 9.6E-11 67.2 -2.8 100 128-232 18-123 (388)
63 KOG2739 Leucine-rich acidic nu 97.6 3.3E-05 7.1E-10 61.5 1.8 124 83-209 20-150 (260)
64 KOG2120 SCF ubiquitin ligase, 97.5 2.6E-06 5.7E-11 69.1 -4.7 85 106-191 186-273 (419)
65 KOG2739 Leucine-rich acidic nu 97.5 4.6E-05 1E-09 60.7 2.2 101 82-186 44-151 (260)
66 COG5238 RNA1 Ran GTPase-activa 97.4 0.00025 5.5E-09 57.1 4.4 159 81-240 92-286 (388)
67 KOG2123 Uncharacterized conser 97.0 3.6E-05 7.7E-10 62.1 -4.2 99 81-184 19-123 (388)
68 PF00560 LRR_1: Leucine Rich R 96.6 0.00074 1.6E-08 32.7 0.6 21 227-248 1-21 (22)
69 PF00560 LRR_1: Leucine Rich R 95.7 0.0042 9.1E-08 30.0 0.7 19 204-223 2-20 (22)
70 smart00369 LRR_TYP Leucine-ric 95.1 0.022 4.8E-07 28.5 2.3 21 129-150 2-22 (26)
71 smart00370 LRR Leucine-rich re 95.1 0.022 4.8E-07 28.5 2.3 21 129-150 2-22 (26)
72 PF13504 LRR_7: Leucine rich r 95.1 0.015 3.4E-07 26.0 1.4 13 130-142 2-14 (17)
73 smart00369 LRR_TYP Leucine-ric 94.5 0.036 7.8E-07 27.7 2.0 22 226-247 2-23 (26)
74 smart00370 LRR Leucine-rich re 94.5 0.036 7.8E-07 27.7 2.0 22 226-247 2-23 (26)
75 KOG1947 Leucine rich repeat pr 94.0 0.011 2.4E-07 52.3 -0.8 62 104-165 242-306 (482)
76 KOG4308 LRR-containing protein 93.1 0.00048 1E-08 61.0 -10.8 108 83-191 89-217 (478)
77 KOG3864 Uncharacterized conser 93.0 0.0095 2.1E-07 46.1 -2.6 82 129-211 101-185 (221)
78 KOG1947 Leucine rich repeat pr 92.3 0.026 5.6E-07 50.0 -1.2 110 104-213 187-306 (482)
79 KOG0473 Leucine-rich repeat pr 92.2 0.0026 5.6E-08 50.3 -6.6 83 80-166 41-123 (326)
80 KOG0473 Leucine-rich repeat pr 92.1 0.0026 5.7E-08 50.3 -6.6 89 99-191 36-124 (326)
81 KOG4308 LRR-containing protein 91.9 0.001 2.2E-08 58.9 -10.3 162 79-240 113-304 (478)
82 PF13516 LRR_6: Leucine Rich r 91.7 0.075 1.6E-06 26.0 0.6 20 226-245 2-21 (24)
83 KOG3864 Uncharacterized conser 90.8 0.026 5.7E-07 43.7 -2.3 82 106-187 102-185 (221)
84 KOG4341 F-box protein containi 85.7 0.36 7.9E-06 41.6 1.0 132 104-235 293-435 (483)
85 smart00365 LRR_SD22 Leucine-ri 84.4 1.1 2.3E-05 22.5 2.0 16 226-241 2-17 (26)
86 smart00364 LRR_BAC Leucine-ric 84.3 0.69 1.5E-05 23.2 1.3 17 130-147 3-19 (26)
87 smart00368 LRR_RI Leucine rich 76.0 2.5 5.4E-05 21.4 1.8 14 226-239 2-15 (28)
88 KOG3763 mRNA export factor TAP 73.0 2.4 5.3E-05 38.0 2.0 63 80-142 217-283 (585)
89 KOG3763 mRNA export factor TAP 70.0 3.1 6.7E-05 37.4 2.0 64 103-167 216-283 (585)
90 TIGR00864 PCC polycystin catio 60.2 7.2 0.00016 41.9 2.7 32 111-142 1-32 (2740)
91 PF11119 DUF2633: Protein of u 51.0 33 0.00072 20.9 3.5 23 1-23 1-23 (59)
92 KOG4341 F-box protein containi 47.5 25 0.00054 30.9 3.5 129 81-209 320-459 (483)
93 smart00367 LRR_CC Leucine-rich 39.4 20 0.00044 17.5 1.2 11 129-139 2-12 (26)
94 TIGR00864 PCC polycystin catio 35.5 23 0.00049 38.5 1.8 32 160-191 1-32 (2740)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=2.3e-27 Score=225.99 Aligned_cols=206 Identities=38% Similarity=0.660 Sum_probs=136.2
Q ss_pred hhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC
Q 025426 37 ITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR 116 (253)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~ 116 (253)
+.|..+++.|++.+. +|...+.. |....++|.|.|+.|.. ..+++.|+++++.+.+..+..+..+++|+.|++++|.
T Consensus 28 ~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~ 104 (968)
T PLN00113 28 AEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ 104 (968)
T ss_pred HHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence 368899999999984 67767777 98888999999999974 3689999999999998888889999999999999999
Q ss_pred CCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC
Q 025426 117 LSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195 (253)
Q Consensus 117 l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 195 (253)
+.+.+|..+. .+.+|++|++++|.+++.+|. ..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|
T Consensus 105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p 181 (968)
T PLN00113 105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP 181 (968)
T ss_pred cCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence 9888887665 777788887777777655554 224445555555555544444444444555555555554444444
Q ss_pred ccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..
T Consensus 182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~ 234 (968)
T PLN00113 182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234 (968)
T ss_pred hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence 44444444444444444444444444444444444444444444444444333
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.87 E-value=9.1e-22 Score=187.78 Aligned_cols=168 Identities=33% Similarity=0.577 Sum_probs=95.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
+++++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+.+|++|+
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~ 218 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIY 218 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEE
Confidence 345555555555555555555566666666666666655556666666666666666666555555544 5555566666
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 66665555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred ecchhhhhc
Q 025426 241 MILNFLQFY 249 (253)
Q Consensus 241 ~~p~~~~~l 249 (253)
.+|..+..+
T Consensus 299 ~~p~~~~~l 307 (968)
T PLN00113 299 EIPELVIQL 307 (968)
T ss_pred CCChhHcCC
Confidence 555544433
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.81 E-value=2.3e-22 Score=148.34 Aligned_cols=164 Identities=31% Similarity=0.558 Sum_probs=150.0
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|..++.+++|+.|++.-|.+. .+|.++ +.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhhh
Confidence 467899999999999 88888999999999999999998 89999999999999999999998 888887 899999999
Q ss_pred EeecCcCCC-CCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 160 SLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 160 ~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|+.+|.+.. .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+- .+|+.++.+..|+.|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 999999864 68888999999999999999998 89999999999999999999987 8899999999999999999999
Q ss_pred ceecchhhhhcc
Q 025426 239 QVMILNFLQFYS 250 (253)
Q Consensus 239 ~~~~p~~~~~l~ 250 (253)
+ ++|++++++.
T Consensus 186 ~-vlppel~~l~ 196 (264)
T KOG0617|consen 186 T-VLPPELANLD 196 (264)
T ss_pred e-ecChhhhhhh
Confidence 8 5555666553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=1.1e-18 Score=150.17 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=112.3
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.|+|++|.|+..-...|..+.+|..|.|+.|+++..-+..|.++++|+.|++..|.|. .+....|.++++|+.|.+
T Consensus 174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlkl 252 (873)
T KOG4194|consen 174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKL 252 (873)
T ss_pred CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhh
Confidence 3455555555555444444555555555555555555222223334555555555555554 333333455555555555
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
.+|.+...-...|..+.++++|+|..|++...-...+.+++.|+.|++++|.+...-++.+..++.|+.|+|++|+++..
T Consensus 253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l 332 (873)
T KOG4194|consen 253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL 332 (873)
T ss_pred hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence 55555444445566777788888888888766667788899999999999999888899999999999999999999999
Q ss_pred cchhhhhccc
Q 025426 242 ILNFLQFYSS 251 (253)
Q Consensus 242 ~p~~~~~l~~ 251 (253)
.+.+|..|+.
T Consensus 333 ~~~sf~~L~~ 342 (873)
T KOG4194|consen 333 DEGSFRVLSQ 342 (873)
T ss_pred ChhHHHHHHH
Confidence 9999888764
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=1.9e-17 Score=142.58 Aligned_cols=169 Identities=25% Similarity=0.276 Sum_probs=122.8
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
...+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|++.+|.|+ ++...-+..++.|+.||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 45677888888887666677778888888888888876 67776666667888888888777 55544446777788888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
|+.|.|+...-..|..-.++++|+|++|+|+......|..+.+|.+|.|+.|+++...+..|+++++|+.|+|..|.|.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 88887774333566666678888888888876666777777778888888888776666777778888888888887765
Q ss_pred ecchhhhhccc
Q 025426 241 MILNFLQFYSS 251 (253)
Q Consensus 241 ~~p~~~~~l~~ 251 (253)
.---.|++|++
T Consensus 236 ve~ltFqgL~S 246 (873)
T KOG4194|consen 236 VEGLTFQGLPS 246 (873)
T ss_pred ehhhhhcCchh
Confidence 54555555543
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=5.2e-18 Score=125.44 Aligned_cols=144 Identities=31% Similarity=0.544 Sum_probs=129.8
Q ss_pred CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 180 (253)
+-.+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|+++ ++|..+ +.+++|+.|+++-|.+. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchh
Confidence 345678899999999998 78888999999999999999999 999999 89999999999999997 889999999999
Q ss_pred ceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 181 RTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 181 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
+.||+.+|++.. .+|..|..+..|+.|++++|.+. .+|+..+++++|+.|.+..|.+. ..|.+++.+.
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt 173 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT 173 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence 999999999864 57888989999999999999997 88999999999999999999987 4566666543
No 7
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.62 E-value=5.6e-17 Score=133.72 Aligned_cols=170 Identities=22% Similarity=0.278 Sum_probs=124.2
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCC--
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPF-- 155 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~-- 155 (253)
-++..+.++|..|+|+...+..|+.+++|+.|||++|.|+.+.|++|.++.+|.+|-+.+ |.|+ .+|...|.++.+
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 345688999999999977788899999999999999999988899999998887776655 8887 777766544433
Q ss_pred ----------------------ccEEEeecCcCCCCCC------------------------------------------
Q 025426 156 ----------------------LEFLSLSLNMFHGGIP------------------------------------------ 171 (253)
Q Consensus 156 ----------------------L~~L~l~~n~~~~~~~------------------------------------------ 171 (253)
+..|.+.+|.+. .++
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg 222 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG 222 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence 333333333332 111
Q ss_pred ---------------------------------------------ccCCCCCCcceEeeecCcCcccCCccccCCCCCCe
Q 025426 172 ---------------------------------------------STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKV 206 (253)
Q Consensus 172 ---------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 206 (253)
..|..+++|+.|++++|.++++-+..|..+..+++
T Consensus 223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 11223567777777777777777777777777777
Q ss_pred eecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 207 LYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 207 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
|.|..|++...-...|.++..|+.|+|.+|+|+-..|..|+.+.
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~ 346 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF 346 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence 77777777644556677888888999999999888888877654
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.61 E-value=6.2e-17 Score=140.71 Aligned_cols=130 Identities=30% Similarity=0.504 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..++.|||++|++. .+|..+..-+++-.|++++|++. .+|. .+.++..|-.||+++|.+. .+|+.+ ..+.+|++|
T Consensus 103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL 178 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTL 178 (1255)
T ss_pred ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhh
Confidence 45666777777666 66666666666666666666665 3343 3345555666666666665 566655 555555555
Q ss_pred EeecCcCC-------------------------CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC
Q 025426 160 SLSLNMFH-------------------------GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214 (253)
Q Consensus 160 ~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 214 (253)
.|++|.+. ..+|.++..+.+|..+|++.|++. ..|+.+.++.+|+.|+|++|++
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 55555432 122333344444555555555554 4555555555555555555554
Q ss_pred c
Q 025426 215 Q 215 (253)
Q Consensus 215 ~ 215 (253)
+
T Consensus 258 t 258 (1255)
T KOG0444|consen 258 T 258 (1255)
T ss_pred e
Confidence 4
No 9
>PLN03150 hypothetical protein; Provisional
Probab=99.61 E-value=1.2e-14 Score=132.01 Aligned_cols=151 Identities=29% Similarity=0.518 Sum_probs=123.5
Q ss_pred CCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCC-----ccceeeeCCC----CCeEEEEEeCCCCccccCCccCCCC
Q 025426 34 SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVC-----NWTGVACDVH----SHRVTVLNISSLNLRGTIPSQLGNL 104 (253)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c-----~~~g~~c~~~----~~~l~~L~l~~~~l~~~~~~~~~~l 104 (253)
.+...|..+|..++..+. ++.. .+ |.. ++| .|.|+.|... ...++.|+|++|.+.+.+|..+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 445568899999998884 3321 24 853 344 7999999521 1258999999999999999999999
Q ss_pred CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC-CCcceE
Q 025426 105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC-TYLRTL 183 (253)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L 183 (253)
++|+.|++++|.+.+.+|..+..+++|++|++++|.+.|.+|+.+ ..+++|++|++++|.+++.+|..+... .++..+
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 999999999999999999999999999999999999998898887 889999999999999999999877653 456778
Q ss_pred eeecCcCc
Q 025426 184 SLAYNDFS 191 (253)
Q Consensus 184 ~L~~n~l~ 191 (253)
++.+|...
T Consensus 521 ~~~~N~~l 528 (623)
T PLN03150 521 NFTDNAGL 528 (623)
T ss_pred EecCCccc
Confidence 88888644
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.60 E-value=9.1e-17 Score=139.68 Aligned_cols=157 Identities=26% Similarity=0.404 Sum_probs=118.7
Q ss_pred CCeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 80 SHRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
.+.++.+++++|++. .-+|..+-.+..|+.||+++|+++ +.|..+..-+++-+|++++|+|. +||..+|.++.-|-+
T Consensus 77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF 154 (1255)
T ss_pred chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence 356777888888875 346777888899999999999998 88999999999999999999998 999999999999999
Q ss_pred EEeecCcCCCCCCccCCCCCCcceEeeecCcCccc-------------------------CCccccCCCCCCeeecccCc
Q 025426 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-------------------------VPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------~p~~l~~l~~L~~L~l~~n~ 213 (253)
|||++|.+. .+|+....+..|++|+|++|.+... +|..+..+.+|..+|++.|.
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 999999997 7788888899999999999986522 33344444455555555555
Q ss_pred CcccCChhhcCCCCCCEEeccCCCCce
Q 025426 214 LQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 214 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+. ..|+.+-.+++|+.|+|++|.|+.
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceee
Confidence 54 445555555555555555555543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=9.7e-16 Score=126.87 Aligned_cols=156 Identities=31% Similarity=0.436 Sum_probs=129.3
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCE-EECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQS-LNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
-|+..+++.|++. .+|..+..+..+.+ +.+++|.+. ..|..+..+++|..|++++|.+. .+|... ..+..|++++
T Consensus 389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~-~~lv~Lq~Ln 464 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEM-GSLVRLQTLN 464 (565)
T ss_pred ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhh-hhhhhhheec
Confidence 3788888888887 77777766665554 566666654 67788888999999999999998 899887 6778899999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
++.|.+. .+|.....+..++++-.++|++....|..+.++.+|.+||+.+|.+. .+|+.+++|.+|+.|++.+|+|.
T Consensus 465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr- 541 (565)
T KOG0472|consen 465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR- 541 (565)
T ss_pred ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-
Confidence 9999887 78887777778888888889998666666999999999999999998 88999999999999999999998
Q ss_pred ecch
Q 025426 241 MILN 244 (253)
Q Consensus 241 ~~p~ 244 (253)
.|+.
T Consensus 542 ~Pr~ 545 (565)
T KOG0472|consen 542 QPRH 545 (565)
T ss_pred CCHH
Confidence 5543
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.51 E-value=1.4e-16 Score=131.87 Aligned_cols=159 Identities=28% Similarity=0.467 Sum_probs=112.1
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
.+..++..+|+++ .+|+.+..+.++..+++.+|+++ ..|+..-.+..|++||...|-++ .+|+.+ +.+.+|+-|++
T Consensus 138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL 213 (565)
T KOG0472|consen 138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYL 213 (565)
T ss_pred hhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHh
Confidence 4556677777776 66777777777777777777777 44444444777888888888776 778777 77788888888
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccc-cCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
.+|++. ..| .|.++..|.+++++.|.+. .+|.+. .++.++.+||+.+|+++ +.|+.+.-+.+|++||+++|.+++
T Consensus 214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 888876 555 5777777777777777776 555444 36777777777777776 667777777777777777777764
Q ss_pred ecchhhhhc
Q 025426 241 MILNFLQFY 249 (253)
Q Consensus 241 ~~p~~~~~l 249 (253)
. |.+++++
T Consensus 290 L-p~sLgnl 297 (565)
T KOG0472|consen 290 L-PYSLGNL 297 (565)
T ss_pred C-Ccccccc
Confidence 4 3344443
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.48 E-value=1.7e-13 Score=125.55 Aligned_cols=111 Identities=25% Similarity=0.269 Sum_probs=78.1
Q ss_pred CCCEEEccCCCCcCcCchhHhc-----------------CCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 130 TLKNVSLGKNKLSGQIPTNICS-----------------NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~-----------------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
+|++|++++|.++ .+|... . ...+|+.|++++|.++ .+|.. .++|+.|++++|.++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls- 415 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT- 415 (788)
T ss_pred ccceEecCCCccC-CCCCCC-cccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-
Confidence 5777777777776 454311 1 1134666666666665 34432 246777778877777
Q ss_pred cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 193 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
.+|..+ .+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|..++.+.+
T Consensus 416 sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s 470 (788)
T PRK15387 416 SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 470 (788)
T ss_pred CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence 355432 46788899999987 78889999999999999999999999988866543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.41 E-value=1.9e-14 Score=129.79 Aligned_cols=153 Identities=30% Similarity=0.378 Sum_probs=124.2
Q ss_pred CCeEEEEEeCCCCccccCCccC--------------------------CCCCCCCEEECCCCCCCCcCChhhhccCCCCE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQL--------------------------GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKN 133 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 133 (253)
...+++|+|..|.+. ..|..+ ..++.|+.|++.+|.++...-+.+.++++|+.
T Consensus 309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV 387 (1081)
T KOG0618|consen 309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV 387 (1081)
T ss_pred cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence 356888999998876 322211 01234778888888888777777888999999
Q ss_pred EEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 134 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 213 (253)
|++++|++. ++|+..+.++..|++|+++||+++ .+|..+..++.|++|...+|.+. ..| ++..++.|+.+|++.|.
T Consensus 388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~ 463 (1081)
T KOG0618|consen 388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN 463 (1081)
T ss_pred eeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence 999999998 999998899999999999999998 78888999999999999999998 777 78889999999999999
Q ss_pred CcccCChhhcCCCCCCEEeccCCC
Q 025426 214 LQGEIPREFGNLTELEQFSLPTNN 237 (253)
Q Consensus 214 l~~~~~~~~~~l~~L~~L~l~~n~ 237 (253)
++...-......++|++||+++|.
T Consensus 464 L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 464 LSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhhhCCCcccceeeccCCc
Confidence 875433333333899999999997
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.41 E-value=6e-13 Score=122.28 Aligned_cols=146 Identities=25% Similarity=0.412 Sum_probs=86.7
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|++++|.+. .+|..++ .+|++|+
T Consensus 220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~ 289 (754)
T PRK15370 220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLS 289 (754)
T ss_pred cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEE
Confidence 46778888888777 4554443 35777777777766 5555443 35667777766666 5665442 3566666
Q ss_pred eecCcCCCCCCccCC-------------------CCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh
Q 025426 161 LSLNMFHGGIPSTLS-------------------NCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE 221 (253)
Q Consensus 161 l~~n~~~~~~~~~~~-------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (253)
+++|.++. +|..+. ..++|++|++++|.++ .+|..+. ++|+.|++++|+++ .+|..
T Consensus 290 Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~ 364 (754)
T PRK15370 290 VYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPET 364 (754)
T ss_pred CCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChh
Confidence 66666652 232111 1135666666666665 3444332 56777777777776 45554
Q ss_pred hcCCCCCCEEeccCCCCceecc
Q 025426 222 FGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 222 ~~~l~~L~~L~l~~n~l~~~~p 243 (253)
+. +.|+.|++++|+++..++
T Consensus 365 lp--~~L~~LdLs~N~Lt~LP~ 384 (754)
T PRK15370 365 LP--PTITTLDVSRNALTNLPE 384 (754)
T ss_pred hc--CCcCEEECCCCcCCCCCH
Confidence 42 567777777777775543
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.38 E-value=5.2e-12 Score=122.51 Aligned_cols=159 Identities=19% Similarity=0.232 Sum_probs=87.9
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+ ..+.+|+.|+
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~ 687 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLD 687 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEe
Confidence 45666666666665 4555556666677777766543334443 5556666666666655434566555 5566666666
Q ss_pred eecCcCCCCCCccCCCCCCcceEeee---------------------cCcCcccCCccc---------------------
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLA---------------------YNDFSGAVPREI--------------------- 198 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~---------------------~n~l~~~~p~~l--------------------- 198 (253)
+++|..-..+|..+ ++++|+.|+++ +|.+. .+|..+
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence 66654322444332 33444444444 44333 222211
Q ss_pred ---------cCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecch
Q 025426 199 ---------GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244 (253)
Q Consensus 199 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 244 (253)
...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 0123566677777665556777777777788888777643334443
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=1.3e-13 Score=115.75 Aligned_cols=160 Identities=24% Similarity=0.273 Sum_probs=115.7
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCC---CCCEEECCCCCCCC----cCChhhhcc-CCCCEEEccCCCCcCcCchh---
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLS---SLQSLNLSCNRLSG----SIPSTIFTI-YTLKNVSLGKNKLSGQIPTN--- 148 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~--- 148 (253)
.++++.|+++++.+.+..+..+..+. +|+.|++++|.+.+ .+...+..+ ++|++|++++|.+++.....
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 46899999999998755555554444 49999999998873 233345566 89999999999987432222
Q ss_pred HhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCcccCCh
Q 025426 149 ICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGEIPR 220 (253)
Q Consensus 149 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~ 220 (253)
.+..+.+|++|++++|.+++. ++..+...++|++|++++|.+++. +...+..+++|++|++++|.+++....
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 235667899999999998742 233455667999999999988743 234456778899999999998863333
Q ss_pred hhc-----CCCCCCEEeccCCCCc
Q 025426 221 EFG-----NLTELEQFSLPTNNLQ 239 (253)
Q Consensus 221 ~~~-----~l~~L~~L~l~~n~l~ 239 (253)
.+. ..+.|+.|++++|.++
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCC
Confidence 222 2478999999999987
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.38 E-value=2.5e-14 Score=118.29 Aligned_cols=160 Identities=26% Similarity=0.283 Sum_probs=127.2
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCC-CCCCCcCChhh------------------------hccCCCCE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSTI------------------------FTIYTLKN 133 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l------------------------~~l~~L~~ 133 (253)
..+++++|||++|+|+.+-|..|.++.++..|-+.+ |+|+......| ..+++|..
T Consensus 89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l 168 (498)
T KOG4237|consen 89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL 168 (498)
T ss_pred chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence 457899999999999989999999999998876665 88873222233 23333333
Q ss_pred EEccCCCC------------------------------------------------------------------------
Q 025426 134 VSLGKNKL------------------------------------------------------------------------ 141 (253)
Q Consensus 134 L~l~~n~l------------------------------------------------------------------------ 141 (253)
|.+..|.+
T Consensus 169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~ 248 (498)
T KOG4237|consen 169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL 248 (498)
T ss_pred hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence 33333211
Q ss_pred -------------cCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeee
Q 025426 142 -------------SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLY 208 (253)
Q Consensus 142 -------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 208 (253)
.+..|...|..+++|++|++++|+++..-+.+|.+...++.|.|..|++.......|.++..|++|+
T Consensus 249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~ 328 (498)
T KOG4237|consen 249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS 328 (498)
T ss_pred HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence 1123444467899999999999999988889999999999999999999866677889999999999
Q ss_pred cccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 209 IGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 209 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|.+|+++...|.+|..+..|.+|++-.|++
T Consensus 329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred ecCCeeEEEecccccccceeeeeehccCcc
Confidence 999999988899999999999999998876
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.38 E-value=1.1e-13 Score=116.19 Aligned_cols=163 Identities=20% Similarity=0.251 Sum_probs=121.2
Q ss_pred CeEEEEEeCCCCccc----cCCccCCCC-CCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcCcCchhH--
Q 025426 81 HRVTVLNISSLNLRG----TIPSQLGNL-SSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQIPTNI-- 149 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-- 149 (253)
++++.|++++|.+.+ .+...+..+ ++|+.|++++|.+++. +...+..+.+|++|++++|.+.+.....+
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~ 187 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE 187 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence 559999999999873 233345566 8999999999998843 33455667899999999999984322222
Q ss_pred -hcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCcccc-----CCCCCCeeecccCcCcc---
Q 025426 150 -CSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREIG-----NLTKLKVLYIGANRLQG--- 216 (253)
Q Consensus 150 -~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~--- 216 (253)
+...++|++|++++|.+++. ++..+..+++|++|++++|.+++.....+. ..+.|+.|++++|.+++
T Consensus 188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~ 267 (319)
T cd00116 188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA 267 (319)
T ss_pred HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence 24557999999999998743 334566788999999999998853332222 24789999999999873
Q ss_pred -cCChhhcCCCCCCEEeccCCCCceecc
Q 025426 217 -EIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 217 -~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
.+...+..+++|+++++++|.+.....
T Consensus 268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~ 295 (319)
T cd00116 268 KDLAEVLAEKESLLELDLRGNKFGEEGA 295 (319)
T ss_pred HHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence 334566777899999999999986633
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.38 E-value=1.8e-12 Score=119.11 Aligned_cols=143 Identities=27% Similarity=0.451 Sum_probs=92.0
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
..++.|++++|.++ .+|..+. .+|+.|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. .+|++|+
T Consensus 199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~ 268 (754)
T PRK15370 199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD 268 (754)
T ss_pred cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence 35667777777776 4554433 47777888777776 4565443 46888888888887 7777662 4688888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCcccc-------------------CCCCCCeeecccCcCcccCChh
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-------------------NLTKLKVLYIGANRLQGEIPRE 221 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-------------------~l~~L~~L~l~~n~l~~~~~~~ 221 (253)
+++|.++ .+|..+. ++|+.|++++|.++. +|..+. -.++|+.|++++|.++ .+|..
T Consensus 269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~ 343 (754)
T PRK15370 269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPAS 343 (754)
T ss_pred CcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChh
Confidence 8888887 5665543 478888888888873 343221 0134555555555555 23433
Q ss_pred hcCCCCCCEEeccCCCCce
Q 025426 222 FGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 222 ~~~l~~L~~L~l~~n~l~~ 240 (253)
+ .++|+.|++++|+++.
T Consensus 344 l--~~sL~~L~Ls~N~L~~ 360 (754)
T PRK15370 344 L--PPELQVLDVSKNQITV 360 (754)
T ss_pred h--cCcccEEECCCCCCCc
Confidence 3 2567777888777764
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.33 E-value=3.5e-12 Score=116.10 Aligned_cols=108 Identities=34% Similarity=0.625 Sum_probs=72.2
Q ss_pred CCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecc
Q 025426 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210 (253)
Q Consensus 131 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 210 (253)
++.|++++|.+.|.+|..+ ..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|+.++++++|+.|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 5566677777766666665 566777777777777766666666677777777777777776667667777777777777
Q ss_pred cCcCcccCChhhcCC-CCCCEEeccCCCCc
Q 025426 211 ANRLQGEIPREFGNL-TELEQFSLPTNNLQ 239 (253)
Q Consensus 211 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~ 239 (253)
+|.++|.+|..++.. .++..+++.+|...
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccc
Confidence 777776666666543 34556666666543
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.33 E-value=3.4e-14 Score=122.33 Aligned_cols=151 Identities=32% Similarity=0.487 Sum_probs=113.9
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
..+.+..|.+. .+|..+..+..|++++|+.|.+. .+|..+..+ -|+.|.+++|+++ .+|+.+ ....+|..||.+.
T Consensus 101 e~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~i-g~~~tl~~ld~s~ 175 (722)
T KOG0532|consen 101 ESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEI-GLLPTLAHLDVSK 175 (722)
T ss_pred HHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCccc-ccchhHHHhhhhh
Confidence 34455555554 56666677777777777777776 666665544 4777777777777 777777 5677777888888
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
|.+. .+|..++.+.+|+.|++.+|++. .+|+++..+ .|..||++.|++. .+|-.|.+|++|++|-|.+|+++..+.
T Consensus 176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence 8776 66777778888888888888877 677777744 4889999999998 889999999999999999999986554
No 23
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.32 E-value=2e-12 Score=98.33 Aligned_cols=105 Identities=32% Similarity=0.398 Sum_probs=31.6
Q ss_pred eEEEEEeCCCCccccCCccCC-CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.++.|+|.+|.|+ .+. .+. .+.+|+.|++++|.++. +. .+..+++|++|++++|.++ .+.+.+...+++|++|+
T Consensus 20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 4567777777776 232 233 45667777777777662 22 3556677777777777776 55544433466777777
Q ss_pred eecCcCCCCC-CccCCCCCCcceEeeecCcCc
Q 025426 161 LSLNMFHGGI-PSTLSNCTYLRTLSLAYNDFS 191 (253)
Q Consensus 161 l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~ 191 (253)
+++|++.... -..+..+++|++|++.+|++.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777765321 134455566666666666655
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.31 E-value=9.7e-13 Score=100.09 Aligned_cols=126 Identities=28% Similarity=0.328 Sum_probs=52.4
Q ss_pred CCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC-CCCCC
Q 025426 102 GNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTY 179 (253)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~ 179 (253)
.+..++++|++++|.++. +. .+. .+.+|+.|++++|.+. .+.. + ..++.|++|++++|.++. +...+ ..+++
T Consensus 16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISS-ISEGLDKNLPN 89 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT
T ss_pred cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence 344578999999999973 32 354 5789999999999998 7653 3 778999999999999984 44434 46899
Q ss_pred cceEeeecCcCcccC-CccccCCCCCCeeecccCcCcccC---ChhhcCCCCCCEEec
Q 025426 180 LRTLSLAYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEI---PREFGNLTELEQFSL 233 (253)
Q Consensus 180 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l 233 (253)
|++|++++|++.... -..+..+++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 999999999997532 245678899999999999998532 234678899999974
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.31 E-value=2.7e-13 Score=122.48 Aligned_cols=151 Identities=26% Similarity=0.326 Sum_probs=127.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+.+..|++.+|.+++..-+.+.++.+|+.|++++|++. .+|. .+.++..|++|++++|.++ .+|+.+ ..+..|++|
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv-a~~~~L~tL 435 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTV-ANLGRLHTL 435 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHH-HhhhhhHHH
Confidence 45788999999999888888999999999999999998 5555 6778999999999999999 999888 889999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 236 (253)
...+|++. .+| .+..++.|+.+|++.|+++...-......++|++||++||.....--+.|..++++...++.-|
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 99999997 777 7889999999999999998544333344489999999999864444566777777777777666
No 26
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.31 E-value=2.3e-11 Score=118.04 Aligned_cols=127 Identities=24% Similarity=0.292 Sum_probs=96.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|++|+++++.....+|. +..+++|++|+
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~ 663 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLK 663 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEE
Confidence 35677777777665 566655 4578999999999887 6777778889999999988764447775 36788999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 213 (253)
+++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.
T Consensus 664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS 715 (1153)
T ss_pred ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence 99987656788888999999999999875444666554 56666666666654
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=1.8e-11 Score=112.44 Aligned_cols=94 Identities=28% Similarity=0.317 Sum_probs=59.4
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.|++.+|+++ .+|.. .++|+.|++++|+++ .+|.. .++|++|++++|.+. .+|.. ..+|+.|++
T Consensus 223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~L 289 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWI 289 (788)
T ss_pred CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc----hhhcCEEEC
Confidence 5667777777766 34432 356777777777776 34432 356677777777766 55542 245667777
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
++|.++ .+|. .+++|+.|++++|.+++
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCcccc
Confidence 777776 3443 23578888888888774
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.28 E-value=9.4e-14 Score=119.64 Aligned_cols=160 Identities=25% Similarity=0.435 Sum_probs=142.1
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
...+..|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+||++.|+++ .+|..+ +.++ |+.|-
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~lp-Lkvli 149 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDLP-LKVLI 149 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-hcCc-ceeEE
Confidence 34677899999888 88988888889999999999998 88999999999999999999999 999998 4555 89999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|+++ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..++ |..||++.|++.
T Consensus 150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS- 224 (722)
T ss_pred EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence 9999998 88888889999999999999998 78999999999999999999987 6777888665 789999999997
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.+|-.|..++
T Consensus 225 ~iPv~fr~m~ 234 (722)
T KOG0532|consen 225 YLPVDFRKMR 234 (722)
T ss_pred ecchhhhhhh
Confidence 7788887765
No 29
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=3.3e-12 Score=110.61 Aligned_cols=160 Identities=33% Similarity=0.513 Sum_probs=111.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCC-CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLS-SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..++.|++.++.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. ++|... ...+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh-hhhhhhhhe
Confidence 45788888888887 5565556663 8888888888887 56666778888888888888887 777654 366778888
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCc-----------------------CcccCCccccCCCCCCeeecccCcCcc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYND-----------------------FSGAVPREIGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-----------------------l~~~~p~~l~~l~~L~~L~l~~n~l~~ 216 (253)
++++|+++ .+|........|+++.+++|+ +. ..+..++.++.+++|++++|+++.
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~ 269 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS 269 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence 88888876 455443344446666666663 32 124556667778888888888873
Q ss_pred cCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426 217 EIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 217 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
++. ++...+++.|++++|.+...+|...+.
T Consensus 270 -i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~ 299 (394)
T COG4886 270 -ISS-LGSLTNLRELDLSGNSLSNALPLIALL 299 (394)
T ss_pred -ccc-ccccCccCEEeccCccccccchhhhcc
Confidence 333 777888888888888887776655443
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.22 E-value=1e-11 Score=107.61 Aligned_cols=153 Identities=34% Similarity=0.523 Sum_probs=111.5
Q ss_pred EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccC-CCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIY-TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
.+++..+.+... ...+..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. .+|..+ ..+++|+.|++++
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccCC
Confidence 477777776422 223455688999999999998 6777777774 9999999999998 887666 7899999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc----------------------cCChh
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG----------------------EIPRE 221 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~----------------------~~~~~ 221 (253)
|+++ .+|......++|+.|++++|.+. .+|........|+++++++|.+.. ..+..
T Consensus 173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence 9998 66665558899999999999998 556554444456666666663220 11344
Q ss_pred hcCCCCCCEEeccCCCCceecc
Q 025426 222 FGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 222 ~~~l~~L~~L~l~~n~l~~~~p 243 (253)
++.++++++|++++|.++.+.+
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred hccccccceecccccccccccc
Confidence 4556667777777777765544
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.13 E-value=4.2e-12 Score=102.15 Aligned_cols=135 Identities=24% Similarity=0.305 Sum_probs=106.5
Q ss_pred CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT 182 (253)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 182 (253)
....|+++|+++|.++ .+..+..-.|+++.|++++|++. .+.. + ..+++|+.||+++|.++.. ...-..+.+.++
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT 356 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence 3567999999999998 67777888899999999999997 5544 3 7889999999999998732 222235678889
Q ss_pred EeeecCcCcccCCccccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEeccCCCCceecch
Q 025426 183 LSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE-IPREFGNLTELEQFSLPTNNLQVMILN 244 (253)
Q Consensus 183 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~ 244 (253)
|.++.|.+. .-..+.++-+|..||+++|++... -...++.+|-|+.+.+.+|++.+.+..
T Consensus 357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 999999876 234567788899999999998742 134588899999999999999876653
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.12 E-value=1.3e-11 Score=99.41 Aligned_cols=131 Identities=25% Similarity=0.253 Sum_probs=108.5
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
...++++|+++|.|+ .+.+++.-.+.++.|++++|.+.. . ..++.+++|+.||+++|.++ ++...- ..+-++++|
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL 357 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTL 357 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeee
Confidence 356889999999998 788888889999999999999973 3 23889999999999999997 554333 678899999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCccc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGE 217 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~ 217 (253)
.+++|.+.. -..+..+.+|..||+.+|++... -...+++++-|+.+.|.+|++.+.
T Consensus 358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 999999852 34567788899999999999743 235688999999999999999853
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2e-11 Score=102.47 Aligned_cols=162 Identities=25% Similarity=0.246 Sum_probs=115.0
Q ss_pred CCeEEEEEeCCCCcc--ccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426 80 SHRVTVLNISSLNLR--GTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 156 (253)
.++++.|||+.|-+. ..+..-...+++|+.|+++.|++..... ..-..+++|+.|.++.|+++..-...+...+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 468899999998765 2333445678899999999998762221 1223578899999999998744333444678999
Q ss_pred cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC--ccccCCCCCCeeecccCcCccc-CChh-----hcCCCCC
Q 025426 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP--REIGNLTKLKVLYIGANRLQGE-IPRE-----FGNLTEL 228 (253)
Q Consensus 157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~-~~~~-----~~~l~~L 228 (253)
+.|+++.|............+..|+.|+|++|++.. .+ ...+.++.|+.|+++.+.+... .|+. ...+++|
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL 303 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL 303 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence 999999995332333334556789999999998873 33 4466788999999999888752 2433 4567889
Q ss_pred CEEeccCCCCceec
Q 025426 229 EQFSLPTNNLQVMI 242 (253)
Q Consensus 229 ~~L~l~~n~l~~~~ 242 (253)
++|++..|++....
T Consensus 304 ~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 304 EYLNISENNIRDWR 317 (505)
T ss_pred eeeecccCcccccc
Confidence 99999999986443
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.06 E-value=1.1e-10 Score=73.38 Aligned_cols=59 Identities=42% Similarity=0.558 Sum_probs=27.3
Q ss_pred CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCc
Q 025426 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND 189 (253)
Q Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 189 (253)
+|++|++++|.+. .+|+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444 4444444444444444444444443333444444444444444443
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3e-10 Score=71.43 Aligned_cols=59 Identities=32% Similarity=0.500 Sum_probs=31.0
Q ss_pred CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237 (253)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 237 (253)
+|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555554433445555555555555555554444555555555555555554
No 36
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.82 E-value=1.8e-10 Score=82.54 Aligned_cols=79 Identities=30% Similarity=0.453 Sum_probs=35.6
Q ss_pred EEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 134 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 213 (253)
.++++|.+. .+|+.+-...+.++++++++|.+. .+|..+..++.|+.|++..|.+. ..|+.+..+.++..|+..+|.
T Consensus 58 i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na 134 (177)
T KOG4579|consen 58 ISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA 134 (177)
T ss_pred Eecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence 344444444 444444333334444444444444 34444444444444444444444 334444444444444444444
Q ss_pred Cc
Q 025426 214 LQ 215 (253)
Q Consensus 214 l~ 215 (253)
+.
T Consensus 135 ~~ 136 (177)
T KOG4579|consen 135 RA 136 (177)
T ss_pred cc
Confidence 43
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5.6e-10 Score=93.89 Aligned_cols=163 Identities=20% Similarity=0.189 Sum_probs=117.5
Q ss_pred CCCeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCCCCc--CChhhhccCCCCEEEccCCCCcCcCchhHhcCCCC
Q 025426 79 HSHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF 155 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 155 (253)
...+++.+.|.+..+....- .....+++++.||+++|-+... ......++++|+.|+++.|.+........-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 34567888888887762221 3566789999999999987633 33445689999999999999862222222134678
Q ss_pred ccEEEeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEec
Q 025426 156 LEFLSLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSL 233 (253)
Q Consensus 156 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l 233 (253)
|+.|.++.|.+++. +-.....+|+|+.|++..|..-........-++.|+.|||++|++.+.. -...+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 99999999999753 3344567899999999999532233333445678999999999976432 245678899999999
Q ss_pred cCCCCcee
Q 025426 234 PTNNLQVM 241 (253)
Q Consensus 234 ~~n~l~~~ 241 (253)
+.+.++++
T Consensus 279 s~tgi~si 286 (505)
T KOG3207|consen 279 SSTGIASI 286 (505)
T ss_pred cccCcchh
Confidence 99988754
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=2e-08 Score=82.44 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=21.6
Q ss_pred CeEEEEEeCCCCccccCCcc----CCCCCCCCEEECCCCCCC
Q 025426 81 HRVTVLNISSLNLRGTIPSQ----LGNLSSLQSLNLSCNRLS 118 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~ 118 (253)
++++.++|++|.+....++. +..+..|++|++.+|.+.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence 36777777777665333322 234556666666666554
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.56 E-value=7.5e-09 Score=90.28 Aligned_cols=127 Identities=27% Similarity=0.379 Sum_probs=87.1
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
..++.++++.|.+. ..-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+ .+.. +..+..|+.|+
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhhe
Confidence 34556667777666 333446677888888888888873 3333667888888888888887 5443 24566688888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~ 215 (253)
+++|.++.. ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 888888632 334557788888888888874433 2 456677777888777765
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.55 E-value=7.4e-08 Score=90.51 Aligned_cols=148 Identities=24% Similarity=0.303 Sum_probs=93.0
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC--CCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR--LSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.+++..+-+|.+. .++... ..++|++|-+..|. +.......|..++.|++||+++|.-.+.+|..+ +.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcc
Confidence 4556666666654 233222 22367777777775 442333345567778888888776555777777 677778888
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC--cccCChhhcCCCCCCEEec
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL--QGEIPREFGNLTELEQFSL 233 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l 233 (253)
++++..+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+..... +...-..+..+.+|+.+..
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88877776 7777777777788888777765555566666677777777765432 2223334455555555544
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.54 E-value=1.1e-09 Score=97.61 Aligned_cols=127 Identities=27% Similarity=0.319 Sum_probs=99.4
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
.+...+.++|.+. .+..++.-++.++.|+|++|++.. ...+..+++|++|||++|.+. .+|.-.-.++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4667788888887 777778888999999999999873 337888999999999999998 77764423333 999999
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCc
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~ 215 (253)
.+|.++.. ..+.++.+|+.||+++|-+.+.-. .-+..+..|+.|+|.||++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 99988632 346788899999999998774322 33556788999999999975
No 42
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.49 E-value=5.3e-09 Score=75.05 Aligned_cols=133 Identities=20% Similarity=0.279 Sum_probs=82.2
Q ss_pred EEEEEeCCCCccc--cCCccCCCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 83 VTVLNISSLNLRG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 83 l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
...++|+.+++-. ..+..+....+|+..++++|.++ .+|+.|. +++.+++|++++|.+. .+|..+ ..++.|+.+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRSL 105 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhhc
Confidence 4456666665431 22333445566777777777777 5555554 3557777888888887 777774 777888888
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCCh
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR 220 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~ 220 (253)
+++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+..-...-..++.++++.+.-+.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 88888776 55666666777777777777665 4444333223333344455556554443
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.43 E-value=1.7e-08 Score=82.87 Aligned_cols=158 Identities=21% Similarity=0.261 Sum_probs=117.6
Q ss_pred CeEEEEEeCCCCccc----c---------CCccCCCCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcC
Q 025426 81 HRVTVLNISSLNLRG----T---------IPSQLGNLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSG 143 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~----~---------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~ 143 (253)
..++.|+|.+|++.. . ...-...-+.|+++..++|++... +...+...+.|+.+.++.|.|..
T Consensus 120 ~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~ 199 (382)
T KOG1909|consen 120 TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP 199 (382)
T ss_pred cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC
Confidence 568899999999862 1 122234457899999999998632 23455667899999999999863
Q ss_pred cC---chhHhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCccc-----cCCCCCCeeeccc
Q 025426 144 QI---PTNICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREI-----GNLTKLKVLYIGA 211 (253)
Q Consensus 144 ~~---~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~ 211 (253)
.. -...+..+++|+.||+.+|.++.. +...+..+++|+.|++++|.+.......+ ...++|+++.+.+
T Consensus 200 eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g 279 (382)
T KOG1909|consen 200 EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG 279 (382)
T ss_pred chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence 21 122347899999999999999743 34567788899999999999875433332 2468999999999
Q ss_pred CcCccc----CChhhcCCCCCCEEeccCCCC
Q 025426 212 NRLQGE----IPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 212 n~l~~~----~~~~~~~l~~L~~L~l~~n~l 238 (253)
|.++.. +...+...+.|..|+|++|.+
T Consensus 280 NeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 280 NEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 998742 233456688999999999999
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=3.2e-09 Score=94.64 Aligned_cols=126 Identities=29% Similarity=0.397 Sum_probs=91.5
Q ss_pred CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCc-cCCCCCCcceEe
Q 025426 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLS 184 (253)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~ 184 (253)
.|.+.++++|.+. ....++.-++.|+.|++++|+++ .+. .+ ..+++|++||+++|.++ .+|. ...++ .|..|.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~L-r~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~ 238 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NL-RRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN 238 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HH-Hhcccccccccccchhc-cccccchhhh-hheeee
Confidence 4666777777776 56667777888899999999887 554 44 77888999999999887 5553 22333 488889
Q ss_pred eecCcCcccCCccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEeccCCCCc
Q 025426 185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~ 239 (253)
+.+|.++. -..+.++++|+.||+++|-+.+.- -..+..+..|+.|+|.||++-
T Consensus 239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 98888762 244667888899999998877521 233556677888888888874
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.41 E-value=5.6e-07 Score=68.85 Aligned_cols=103 Identities=21% Similarity=0.261 Sum_probs=50.8
Q ss_pred CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC-ccCCCCCCcceEe
Q 025426 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP-STLSNCTYLRTLS 184 (253)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~ 184 (253)
+...+||++|.+. . -..|..++.|.+|.+.+|.|+ .+.+.+-..+++|..|.+.+|.+....- ..+..++.|++|.
T Consensus 43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-h-cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4445555555543 1 122444555555566666555 4544443445555566666655542111 2344555666666
Q ss_pred eecCcCcccC---CccccCCCCCCeeeccc
Q 025426 185 LAYNDFSGAV---PREIGNLTKLKVLYIGA 211 (253)
Q Consensus 185 L~~n~l~~~~---p~~l~~l~~L~~L~l~~ 211 (253)
+-+|+++..- --.++.+++|++||++.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 6555554211 11244556666666543
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.39 E-value=1.6e-07 Score=75.91 Aligned_cols=161 Identities=21% Similarity=0.250 Sum_probs=100.6
Q ss_pred CeEEEEEeCCCCcc--ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 81 HRVTVLNISSLNLR--GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 81 ~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
.+|+.+||.+|.|. ..+..-+..+|+|++|++++|.+...+...-....+|++|.+.++.+...-..+....++.++.
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 46888999999886 3455556788999999999998873332222466789999999988876666666678888888
Q ss_pred EEeecCcCCC-----CCCccC------------------------CCCCCcceEeeecCcCccc-CCccccCCCCCCeee
Q 025426 159 LSLSLNMFHG-----GIPSTL------------------------SNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLY 208 (253)
Q Consensus 159 L~l~~n~~~~-----~~~~~~------------------------~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~ 208 (253)
|+++.|.... .-.+.+ ..++++..+-+..|.+... ........+.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 8888884321 000111 1123444444444444321 112223345556677
Q ss_pred cccCcCccc-CChhhcCCCCCCEEeccCCCCcee
Q 025426 209 IGANRLQGE-IPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 209 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
|+.|++... --+++..++.|..|.+++|++.+.
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence 777776542 235567777777777777776544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.39 E-value=3.5e-08 Score=86.09 Aligned_cols=154 Identities=27% Similarity=0.371 Sum_probs=108.2
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
...++.+++.+|.|. .+...+..+++|++|++++|.++.. ..+..+..|+.|++++|.+. .+.. +..+..|+.+
T Consensus 94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l 167 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISG--LESLKSLKLL 167 (414)
T ss_pred ccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccC--Cccchhhhcc
Confidence 467899999999998 4443367789999999999999733 34567778999999999998 6554 3558899999
Q ss_pred EeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCC--------------cccc------CCCC--CCeeecccCcCcc
Q 025426 160 SLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVP--------------REIG------NLTK--LKVLYIGANRLQG 216 (253)
Q Consensus 160 ~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p--------------~~l~------~l~~--L~~L~l~~n~l~~ 216 (253)
++++|.++..-+ . ...+.+++.+++.+|.+..... ..+. .... |+.+++++|++.
T Consensus 168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~- 245 (414)
T KOG0531|consen 168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS- 245 (414)
T ss_pred cCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-
Confidence 999999974433 2 4677788888888887752211 0011 1111 566777777765
Q ss_pred cCChhhcCCCCCCEEeccCCCCcee
Q 025426 217 EIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 217 ~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
..+..+..+.++..+++..|++...
T Consensus 246 ~~~~~~~~~~~l~~l~~~~n~~~~~ 270 (414)
T KOG0531|consen 246 RSPEGLENLKNLPVLDLSSNRISNL 270 (414)
T ss_pred cccccccccccccccchhhcccccc
Confidence 3334566667777777777766543
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.38 E-value=2.7e-07 Score=86.83 Aligned_cols=131 Identities=27% Similarity=0.391 Sum_probs=108.9
Q ss_pred CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC--CcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK--LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180 (253)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 180 (253)
.....+.+.+.+|.+. ..+... ..++|++|-+..|. +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 3456777888888765 344333 34489999999997 55 7888888999999999999987666899999999999
Q ss_pred ceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237 (253)
Q Consensus 181 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 237 (253)
++|++++..+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+....
T Consensus 598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 99999999999 899999999999999999887655667878889999999887654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=5.6e-07 Score=52.22 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=25.9
Q ss_pred CCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242 (253)
Q Consensus 202 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (253)
++|++|++++|+++ .+|..++.+++|+.|++++|+++++.
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence 35677777777776 45556777777777777777777544
No 50
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.29 E-value=4.6e-07 Score=83.18 Aligned_cols=142 Identities=23% Similarity=0.262 Sum_probs=95.9
Q ss_pred CCCCEEECCCCCCC-CcCChhh-hccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426 105 SSLQSLNLSCNRLS-GSIPSTI-FTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT 182 (253)
Q Consensus 105 ~~L~~L~l~~n~l~-~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 182 (253)
.+|+.|++++...- ..-+..+ ..+|.|++|.+++-.+...--..++.++++|..||+++..++.. ..++.+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46888888775422 2223333 34788999998887765322234567888999999999888743 56778888888
Q ss_pred EeeecCcCcc-cCCccccCCCCCCeeecccCcCcccC--C----hhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426 183 LSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEI--P----REFGNLTELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 183 L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
|.+.+=.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+.+-+.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence 8887766652 22245678899999999987654221 1 11235789999999998887666555443
No 51
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.25 E-value=1.9e-06 Score=66.00 Aligned_cols=106 Identities=20% Similarity=0.185 Sum_probs=82.5
Q ss_pred cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccC-CccccCCCCCCe
Q 025426 128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV-PREIGNLTKLKV 206 (253)
Q Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~ 206 (253)
..+...+|+++|.+. .++. |..++.|.+|.+.+|.|+...|.--.-+++|..|.+.+|++.... -.-+..+++|++
T Consensus 41 ~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred ccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 457788999999987 5544 578899999999999999666655556788999999999987321 133667899999
Q ss_pred eecccCcCcccC---ChhhcCCCCCCEEeccCC
Q 025426 207 LYIGANRLQGEI---PREFGNLTELEQFSLPTN 236 (253)
Q Consensus 207 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n 236 (253)
|.+-+|+++..- ...+..+++|+.||+++=
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999999987421 234678899999998763
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.21 E-value=1.9e-06 Score=50.01 Aligned_cols=36 Identities=39% Similarity=0.639 Sum_probs=18.5
Q ss_pred CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCC
Q 025426 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH 167 (253)
Q Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (253)
+|++|++++|+++ .+|+.+ ..+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l-~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPEL-SNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHG-TTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchH-hCCCCCCEEEecCCCCC
Confidence 4555555555555 555443 45555555555555554
No 53
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.13 E-value=4.3e-06 Score=48.29 Aligned_cols=40 Identities=48% Similarity=1.025 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHhcCCCCCccccCCCCCC--CCCCccceeeeC
Q 025426 37 ITDRDALLALKAHITHDPTNFLAKNWNTS--TPVCNWTGVACD 77 (253)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~l~~~w~~~--~~~c~~~g~~c~ 77 (253)
..|..+|++||..+..++...+.+ |..+ .++|.|.||.|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence 468899999999997667677888 9987 799999999995
No 54
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=9.7e-08 Score=77.20 Aligned_cols=85 Identities=24% Similarity=0.228 Sum_probs=49.8
Q ss_pred EEEEEeCCCCccc-cCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC-CcCcCchhHhcCCCCccEEE
Q 025426 83 VTVLNISSLNLRG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 83 l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ 160 (253)
++.+||+...|+. .+-..+..+.+|+.|.+.++.+...+...+++-..|+.|+++.+. ++..-...++.++..|..|+
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN 266 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN 266 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence 5666666666652 222233455667777777777766666666677777777776653 44222233445666666666
Q ss_pred eecCcCC
Q 025426 161 LSLNMFH 167 (253)
Q Consensus 161 l~~n~~~ 167 (253)
++.|.++
T Consensus 267 lsWc~l~ 273 (419)
T KOG2120|consen 267 LSWCFLF 273 (419)
T ss_pred chHhhcc
Confidence 6666543
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.97 E-value=2.6e-05 Score=66.94 Aligned_cols=71 Identities=15% Similarity=0.268 Sum_probs=40.9
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC-CCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN-KLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 159 (253)
.+++.|+++++.+. .+|. +. .+|+.|.+++|.-...+|..+ ..+|++|++++| .+. .+|+ +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccceE
Confidence 45667888877666 4452 22 357778877654333555544 246777777777 444 4443 34555
Q ss_pred EeecCc
Q 025426 160 SLSLNM 165 (253)
Q Consensus 160 ~l~~n~ 165 (253)
++..+.
T Consensus 118 ~L~~n~ 123 (426)
T PRK15386 118 EIKGSA 123 (426)
T ss_pred EeCCCC
Confidence 555444
No 56
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.89 E-value=4.9e-05 Score=54.87 Aligned_cols=105 Identities=23% Similarity=0.274 Sum_probs=39.2
Q ss_pred cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCC
Q 025426 100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179 (253)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 179 (253)
.|....+|+.+.+.. .+.......|....+|+.+.+.++ +. .++...|..+.+++.+.+.+ .+.......|..+++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence 344445555555543 333333344445555555555543 43 44555555555555555543 222122234444555
Q ss_pred cceEeeecCcCcccCCccccCCCCCCeeecc
Q 025426 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210 (253)
Q Consensus 180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 210 (253)
++.+.+..+ +.......+.+. +++.+.+.
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 555555443 332223333333 44544444
No 57
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.88 E-value=1.1e-05 Score=64.77 Aligned_cols=136 Identities=20% Similarity=0.223 Sum_probs=64.5
Q ss_pred CCCCCCCCEEECCCCCCCCcCChhh----hccCCCCEEEccCCCCcCcCch-----hHh--------cCCCCccEEEeec
Q 025426 101 LGNLSSLQSLNLSCNRLSGSIPSTI----FTIYTLKNVSLGKNKLSGQIPT-----NIC--------SNLPFLEFLSLSL 163 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~-----~~~--------~~l~~L~~L~l~~ 163 (253)
+..+++|+..+++.|.+....|..+ +.-..|++|.+++|.+. .+.. .+| ..-+.|+.+...+
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 3456677777777776665555443 33456677777777654 2211 110 1234566666666
Q ss_pred CcCCCCCC----ccCCCCCCcceEeeecCcCcccCC-----ccccCCCCCCeeecccCcCccc----CChhhcCCCCCCE
Q 025426 164 NMFHGGIP----STLSNCTYLRTLSLAYNDFSGAVP-----REIGNLTKLKVLYIGANRLQGE----IPREFGNLTELEQ 230 (253)
Q Consensus 164 n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~ 230 (253)
|.+....- ..+..-.+|+++.+..|.|.-... ..+..+.+|++||++.|-++-. +.+++..++.|+.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 66531111 112222355555665555541100 1123345566666666655421 2223334444455
Q ss_pred EeccCCC
Q 025426 231 FSLPTNN 237 (253)
Q Consensus 231 L~l~~n~ 237 (253)
|.+..+-
T Consensus 247 L~lnDCl 253 (388)
T COG5238 247 LRLNDCL 253 (388)
T ss_pred ccccchh
Confidence 5544443
No 58
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.9e-06 Score=76.56 Aligned_cols=136 Identities=22% Similarity=0.247 Sum_probs=95.2
Q ss_pred CeEEEEEeCCCCcc-ccCCccC-CCCCCCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426 81 HRVTVLNISSLNLR-GTIPSQL-GNLSSLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE 157 (253)
Q Consensus 81 ~~l~~L~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 157 (253)
.+++.|++++...- ..-+..+ ..+|+|+.|.+.+-.+.. .+.....++++|..||+++++++ .+ .++ +.+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence 46788888886542 1222223 347899999999877642 23344567899999999999998 55 555 8899999
Q ss_pred EEEeecCcCCC-CCCccCCCCCCcceEeeecCcCcccC--C----ccccCCCCCCeeecccCcCcccCC
Q 025426 158 FLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAV--P----REIGNLTKLKVLYIGANRLQGEIP 219 (253)
Q Consensus 158 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~l~~n~l~~~~~ 219 (253)
.|.+.+=.+.. ..-..+.++++|++||++..+..... . +.-..+++|+.||.+++.+.+.+-
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l 267 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL 267 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence 99887766643 22245678999999999988665221 1 122357899999999988876443
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.78 E-value=9.5e-05 Score=53.36 Aligned_cols=122 Identities=19% Similarity=0.305 Sum_probs=73.0
Q ss_pred hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCC
Q 025426 123 STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202 (253)
Q Consensus 123 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 202 (253)
.+|....+|+.+.+.. .+. .++...|..+.+|+.+.+.++ +.......|..+++++.+.+.. .+.......+..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4567778999999985 576 788888899989999999886 6544557788888999999976 45435556777899
Q ss_pred CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+++.+++..+ +.......|..+ +++.+.+.. .++.+....|.+.++
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~ 127 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK 127 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence 9999999765 554556678887 899999886 666677777777643
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=9.9e-05 Score=63.44 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=74.0
Q ss_pred CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC-cCCCCCCccCCCCCC
Q 025426 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN-MFHGGIPSTLSNCTY 179 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~ 179 (253)
+..+.+++.|++++|.++ .+|. -..+|++|.++++.--..+|..+ ..+|++|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence 445688999999999887 5662 23479999999854333777655 368999999998 454 4453 3
Q ss_pred cceEeeecCcCc--ccCCccccCC------------------CCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426 180 LRTLSLAYNDFS--GAVPREIGNL------------------TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236 (253)
Q Consensus 180 L~~L~L~~n~l~--~~~p~~l~~l------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 236 (253)
|+.|++..+... +.+|..+..+ ++|++|++++|... ..|..+. .+|+.|+++.+
T Consensus 114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 555566554421 1344333222 36777777777654 2332222 46677777665
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=3.9e-05 Score=62.43 Aligned_cols=165 Identities=18% Similarity=0.210 Sum_probs=108.3
Q ss_pred CCccceeeeC-CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcC--
Q 025426 68 VCNWTGVACD-VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSG-- 143 (253)
Q Consensus 68 ~c~~~g~~c~-~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~-- 143 (253)
...|..+.|. .+.++++.|+++.|++...+...-....+|+.|-+.+..+.- .....+..+|+++.|.++.|.+..
T Consensus 83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n 162 (418)
T KOG2982|consen 83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN 162 (418)
T ss_pred hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence 3456666666 678999999999999985554433466789999998877652 233445667777777777773320
Q ss_pred -------cCchh-------------------HhcCCCCccEEEeecCcCCCCC-CccCCCCCCcceEeeecCcCccc-CC
Q 025426 144 -------QIPTN-------------------ICSNLPFLEFLSLSLNMFHGGI-PSTLSNCTYLRTLSLAYNDFSGA-VP 195 (253)
Q Consensus 144 -------~~~~~-------------------~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p 195 (253)
...+. +..-.+++..+-+..|.+.... ...+..++.+-.|+|+.|++..- --
T Consensus 163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv 242 (418)
T KOG2982|consen 163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV 242 (418)
T ss_pred cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH
Confidence 11110 1123456666666777665322 24455667777899999988631 12
Q ss_pred ccccCCCCCCeeecccCcCcccCCh------hhcCCCCCCEEe
Q 025426 196 REIGNLTKLKVLYIGANRLQGEIPR------EFGNLTELEQFS 232 (253)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~ 232 (253)
.++.++++|.-|.+.++++.+.+-. .++.+++++.|+
T Consensus 243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 243 DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence 5677889999999999998754321 246778887776
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.59 E-value=4.4e-06 Score=67.17 Aligned_cols=100 Identities=29% Similarity=0.434 Sum_probs=68.6
Q ss_pred cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCe
Q 025426 128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKV 206 (253)
Q Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~ 206 (253)
+.+.+.|+.-++.+. .| +++..|+.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.+... ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence 445666777777776 43 4467788888888888888643 336677888888888887763221 33567888888
Q ss_pred eecccCcCcccCCh-----hhcCCCCCCEEe
Q 025426 207 LYIGANRLQGEIPR-----EFGNLTELEQFS 232 (253)
Q Consensus 207 L~l~~n~l~~~~~~-----~~~~l~~L~~L~ 232 (253)
|+|..|+=.|..+. .+..+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888886654433 355677777775
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.58 E-value=3.3e-05 Score=61.52 Aligned_cols=124 Identities=21% Similarity=0.184 Sum_probs=72.9
Q ss_pred EEEEEeCCCC-ccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC--CCcCcCchhHhcCCCCccEE
Q 025426 83 VTVLNISSLN-LRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN--KLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 83 l~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L 159 (253)
++.+.+.++. ..+.+......+..|+.+.+.+..++. -..+..+++|++|.++.| .+.+.++.-. ..+++|+++
T Consensus 20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l 96 (260)
T KOG2739|consen 20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVL 96 (260)
T ss_pred hhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEE
Confidence 4444444332 123455555556677777777766651 123456778888888888 5655555544 456888888
Q ss_pred EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeec
Q 025426 160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYI 209 (253)
Q Consensus 160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l 209 (253)
++++|+++.. .-..+..+.+|..|++.+|..++... ..|.-+++|++|+-
T Consensus 97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred eecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 8888887621 11223455677788888877664211 22344566666653
No 64
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=2.6e-06 Score=69.08 Aligned_cols=85 Identities=28% Similarity=0.314 Sum_probs=64.3
Q ss_pred CCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc-CCCCCC-ccCCCCCCcce
Q 025426 106 SLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM-FHGGIP-STLSNCTYLRT 182 (253)
Q Consensus 106 ~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~ 182 (253)
.|+.||+++..++. ....-+..+.+|+.|.+.++++.+.+-..+ ..-.+|+.++++++. ++.... -.+.+++.|..
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 58999999988762 233456778899999999999987777777 677899999999874 543222 23567788888
Q ss_pred EeeecCcCc
Q 025426 183 LSLAYNDFS 191 (253)
Q Consensus 183 L~L~~n~l~ 191 (253)
|+++++.+.
T Consensus 265 LNlsWc~l~ 273 (419)
T KOG2120|consen 265 LNLSWCFLF 273 (419)
T ss_pred cCchHhhcc
Confidence 888888765
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.54 E-value=4.6e-05 Score=60.71 Aligned_cols=101 Identities=22% Similarity=0.207 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCC--CCCCcCChhhhccCCCCEEEccCCCCcC--cCchhHhcCCCCcc
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCN--RLSGSIPSTIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLE 157 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~ 157 (253)
.+..+++.+..++ .-..+..+++|+.|.++.| .+.+.++.-....++|++|++++|++.. ++.+ ...+.+|.
T Consensus 44 ~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~ 119 (260)
T KOG2739|consen 44 ELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK 119 (260)
T ss_pred chhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence 4455555555544 1123555667777777777 4444444444455777777777777651 1111 13456666
Q ss_pred EEEeecCcCCCCCC---ccCCCCCCcceEeee
Q 025426 158 FLSLSLNMFHGGIP---STLSNCTYLRTLSLA 186 (253)
Q Consensus 158 ~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~ 186 (253)
.|++.+|..+..-- ..|.-+++|++|+-.
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 77777776653111 224445666665543
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.37 E-value=0.00025 Score=57.12 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=102.6
Q ss_pred CeEEEEEeCCCCccccCCcc----CCCCCCCCEEECCCCCCCCc----CChhh---------hccCCCCEEEccCCCCcC
Q 025426 81 HRVTVLNISSLNLRGTIPSQ----LGNLSSLQSLNLSCNRLSGS----IPSTI---------FTIYTLKNVSLGKNKLSG 143 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~l---------~~l~~L~~L~l~~n~l~~ 143 (253)
++++..+|++|.+....|+. ++.-..|.+|.+++|.+..+ +..++ ..-|.|++.....|++.
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle- 170 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE- 170 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence 67889999999887665544 34557788999999987521 22222 23477888888888876
Q ss_pred cCchh----HhcCCCCccEEEeecCcCCCCCC-----ccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecc
Q 025426 144 QIPTN----ICSNLPFLEFLSLSLNMFHGGIP-----STLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIG 210 (253)
Q Consensus 144 ~~~~~----~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~ 210 (253)
..+.. .+.....|+++-+..|.|..... ..+..+.+|+.||+..|-++.. +...++.++.|+.|.+.
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln 250 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN 250 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence 44432 23444678888888887753211 1234457888888888887633 22345667778888888
Q ss_pred cCcCcccCChh----hc--CCCCCCEEeccCCCCce
Q 025426 211 ANRLQGEIPRE----FG--NLTELEQFSLPTNNLQV 240 (253)
Q Consensus 211 ~n~l~~~~~~~----~~--~l~~L~~L~l~~n~l~~ 240 (253)
.|-++....+. |. ..++|..|...+|.+.+
T Consensus 251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 88776433322 22 34667777777776543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.95 E-value=3.6e-05 Score=62.08 Aligned_cols=99 Identities=26% Similarity=0.246 Sum_probs=60.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh-HhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN-ICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L 159 (253)
.+++.|+.-++++.++.- ...++.|+.|.|+-|+++. -..+..+.+|++|+|..|.|. ++.+- -+.++++|+.|
T Consensus 19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence 456777777777764322 2456777777777777762 233566777777777777776 44321 12567777777
Q ss_pred EeecCcCCCCCCc-----cCCCCCCcceEe
Q 025426 160 SLSLNMFHGGIPS-----TLSNCTYLRTLS 184 (253)
Q Consensus 160 ~l~~n~~~~~~~~-----~~~~l~~L~~L~ 184 (253)
.|..|..-+..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 7777766544332 234456666554
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.62 E-value=0.00074 Score=32.69 Aligned_cols=21 Identities=33% Similarity=0.346 Sum_probs=12.3
Q ss_pred CCCEEeccCCCCceecchhhhh
Q 025426 227 ELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 227 ~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
+|++||+++|+++ .+|++|++
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 3566677777666 44444554
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.73 E-value=0.0042 Score=29.98 Aligned_cols=19 Identities=37% Similarity=0.637 Sum_probs=10.0
Q ss_pred CCeeecccCcCcccCChhhc
Q 025426 204 LKVLYIGANRLQGEIPREFG 223 (253)
Q Consensus 204 L~~L~l~~n~l~~~~~~~~~ 223 (253)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555566666555 4444443
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=95.14 E-value=0.022 Score=28.54 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCCCEEEccCCCCcCcCchhHh
Q 025426 129 YTLKNVSLGKNKLSGQIPTNIC 150 (253)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~ 150 (253)
.+|++|++++|.+. .+|+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666677777666 6666554
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=95.14 E-value=0.022 Score=28.54 Aligned_cols=21 Identities=29% Similarity=0.532 Sum_probs=13.5
Q ss_pred CCCCEEEccCCCCcCcCchhHh
Q 025426 129 YTLKNVSLGKNKLSGQIPTNIC 150 (253)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~ 150 (253)
.+|++|++++|.+. .+|+..|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666677777666 6666554
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.10 E-value=0.015 Score=26.04 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=4.6
Q ss_pred CCCEEEccCCCCc
Q 025426 130 TLKNVSLGKNKLS 142 (253)
Q Consensus 130 ~L~~L~l~~n~l~ 142 (253)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 3444444444443
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.48 E-value=0.036 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCCEEeccCCCCceecchhhh
Q 025426 226 TELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
++|+.|++++|+++.+++..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777777777766666554
No 74
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.48 E-value=0.036 Score=27.74 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=15.3
Q ss_pred CCCCEEeccCCCCceecchhhh
Q 025426 226 TELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
++|+.|++++|+++.+++..|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777777777766666554
No 75
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.04 E-value=0.011 Score=52.27 Aligned_cols=62 Identities=26% Similarity=0.196 Sum_probs=28.1
Q ss_pred CCCCCEEECCCCC-CCCcCChhhhc-cCCCCEEEccCCC-CcCcCchhHhcCCCCccEEEeecCc
Q 025426 104 LSSLQSLNLSCNR-LSGSIPSTIFT-IYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFLSLSLNM 165 (253)
Q Consensus 104 l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~ 165 (253)
+++|+.++++.+. ++...-..+.. +++|++|.+.++. ++...-..+...+++|++|+++++.
T Consensus 242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 4455555555554 33222222222 4555555555444 3433333333445555555555554
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.10 E-value=0.00048 Score=60.98 Aligned_cols=108 Identities=22% Similarity=0.243 Sum_probs=52.0
Q ss_pred EEEEEeCCCCcccc----CCccCCCCCCCCEEECCCCCCCCcCChh----hhcc-CCCCEEEccCCCCcCc----CchhH
Q 025426 83 VTVLNISSLNLRGT----IPSQLGNLSSLQSLNLSCNRLSGSIPST----IFTI-YTLKNVSLGKNKLSGQ----IPTNI 149 (253)
Q Consensus 83 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~~ 149 (253)
+..+.+.+|.+.+. +...+...+.|+.|++++|.+...-... +... ..+++|++..|.+++. +.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 55666777766533 2233455566777777777665221111 1111 3455566666655532 22222
Q ss_pred hcCCCCccEEEeecCcCCC----CCCccCC----CCCCcceEeeecCcCc
Q 025426 150 CSNLPFLEFLSLSLNMFHG----GIPSTLS----NCTYLRTLSLAYNDFS 191 (253)
Q Consensus 150 ~~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~L~~n~l~ 191 (253)
.....++.++++.|.+.. .++..+. ...++++|.+.+|.++
T Consensus 169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 224555566666665421 1112222 2445556666665554
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.96 E-value=0.0095 Score=46.07 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=50.7
Q ss_pred CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC-ccC-CCCCCcceEeeecC-cCcccCCccccCCCCCC
Q 025426 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP-STL-SNCTYLRTLSLAYN-DFSGAVPREIGNLTKLK 205 (253)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~ 205 (253)
..++.+|-++..|..+.-+.+ ..+++++.|.+.++.--+... +-+ ...++|+.|++++| +|++..-..+..+++|+
T Consensus 101 ~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred ceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 457788888888875544555 677778787777775321111 111 13467778888766 45544455566677777
Q ss_pred eeeccc
Q 025426 206 VLYIGA 211 (253)
Q Consensus 206 ~L~l~~ 211 (253)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 777654
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.30 E-value=0.026 Score=49.96 Aligned_cols=110 Identities=21% Similarity=0.108 Sum_probs=51.8
Q ss_pred CCCCCEEECCCCCCCCc--CChhhhccCCCCEEEccCC-CCcCcCc---hhHhcCCCCccEEEeecCc-CCCCCCccCC-
Q 025426 104 LSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVSLGKN-KLSGQIP---TNICSNLPFLEFLSLSLNM-FHGGIPSTLS- 175 (253)
Q Consensus 104 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~---~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~- 175 (253)
.+.|+.+.+..+.-... ........++|+.|+++++ ......+ ......+.+|+.++++++. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 45566666655532212 2233445566666666652 1110111 1122344566666666665 4432222222
Q ss_pred CCCCcceEeeecCc-CcccCC-ccccCCCCCCeeecccCc
Q 025426 176 NCTYLRTLSLAYND-FSGAVP-REIGNLTKLKVLYIGANR 213 (253)
Q Consensus 176 ~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~l~~n~ 213 (253)
.+++|++|.+.++. +++..- .....++.|+.|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655554 332211 222345566666666655
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.21 E-value=0.0026 Score=50.33 Aligned_cols=83 Identities=28% Similarity=0.267 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.||++.|++. .....|+.+..+..|+++.|.+. ..|..+.+...++.++..+|.++ ..|.+. ...++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~-~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ-KKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc-cccCCcchh
Confidence 345556666666554 33333444455555555555554 45555555555555555555555 455444 455555555
Q ss_pred EeecCcC
Q 025426 160 SLSLNMF 166 (253)
Q Consensus 160 ~l~~n~~ 166 (253)
++-+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 5555543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.12 E-value=0.0026 Score=50.28 Aligned_cols=89 Identities=16% Similarity=0.188 Sum_probs=58.8
Q ss_pred ccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCC
Q 025426 99 SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178 (253)
Q Consensus 99 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 178 (253)
..+..+...+.||++.|.+- .+-..++.+..|..|+++.|.+. .+|... .....+..+++..|... ..|.++...+
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccC
Confidence 34556677777888777664 34445556666777777777776 666655 55555666666666654 6677777777
Q ss_pred CcceEeeecCcCc
Q 025426 179 YLRTLSLAYNDFS 191 (253)
Q Consensus 179 ~L~~L~L~~n~l~ 191 (253)
.++++++-.|.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 7777777777654
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.94 E-value=0.001 Score=58.92 Aligned_cols=162 Identities=24% Similarity=0.233 Sum_probs=109.1
Q ss_pred CCCeEEEEEeCCCCccccCCc----cCCCC-CCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcC----cC
Q 025426 79 HSHRVTVLNISSLNLRGTIPS----QLGNL-SSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSG----QI 145 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~ 145 (253)
....+..|++++|.+.+.... .+... ..++.|++..|.++.. +...+.....++.++++.|.+.. .+
T Consensus 113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l 192 (478)
T KOG4308|consen 113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL 192 (478)
T ss_pred ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence 345688899999998743222 22222 4577788888887743 44556667789999999998741 12
Q ss_pred chhHh---cCCCCccEEEeecCcCCCCCC----ccCCCCCC-cceEeeecCcCccc----CCccccCC-CCCCeeecccC
Q 025426 146 PTNIC---SNLPFLEFLSLSLNMFHGGIP----STLSNCTY-LRTLSLAYNDFSGA----VPREIGNL-TKLKVLYIGAN 212 (253)
Q Consensus 146 ~~~~~---~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~l~~n 212 (253)
+..+- ....++++|.+.+|.++.... ..+...+. +..+++..|.+.+. ..+.+... ..++.++++.|
T Consensus 193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence 22221 246779999999998863221 23344455 66799999988744 22334444 67899999999
Q ss_pred cCccc----CChhhcCCCCCCEEeccCCCCce
Q 025426 213 RLQGE----IPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 213 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
.+++. +...+..++.++++.+++|.+.+
T Consensus 273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 98864 34556677889999999998864
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=91.70 E-value=0.075 Score=25.98 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=9.4
Q ss_pred CCCCEEeccCCCCceecchh
Q 025426 226 TELEQFSLPTNNLQVMILNF 245 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~~~p~~ 245 (253)
++|+.|++++|.|++.-...
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 45556666666655444333
No 83
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.80 E-value=0.026 Score=43.72 Aligned_cols=82 Identities=20% Similarity=0.128 Sum_probs=49.9
Q ss_pred CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCc-CchhHhcCCCCccEEEeecCc-CCCCCCccCCCCCCcceE
Q 025426 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ-IPTNICSNLPFLEFLSLSLNM-FHGGIPSTLSNCTYLRTL 183 (253)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L 183 (253)
.++.++-++..+.++--..+..++.++.|.+.++.--+. --+.+..-.++|+.|++++|. ||...-..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777766655555566677777777777653211 111121234678888888774 665555566677777777
Q ss_pred eeec
Q 025426 184 SLAY 187 (253)
Q Consensus 184 ~L~~ 187 (253)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7654
No 84
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=85.70 E-value=0.36 Score=41.65 Aligned_cols=132 Identities=23% Similarity=0.175 Sum_probs=58.6
Q ss_pred CCCCCEEECCCCCCCC-cCChhh-hccCCCCEEEccCCCC-cCcCchhHhcCCCCccEEEeecCcCCC--CCCccCCCCC
Q 025426 104 LSSLQSLNLSCNRLSG-SIPSTI-FTIYTLKNVSLGKNKL-SGQIPTNICSNLPFLEFLSLSLNMFHG--GIPSTLSNCT 178 (253)
Q Consensus 104 l~~L~~L~l~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~ 178 (253)
+..|+.++.+++...+ ..-.++ .+.++|+.|.++.++. +..--..+-.+.+.|+.+++.++.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4455666665554311 111122 2245666666666552 211111112345556666666554321 1222223455
Q ss_pred CcceEeeecCcCc-cc----CCccccCCCCCCeeecccCcCc-ccCChhhcCCCCCCEEeccC
Q 025426 179 YLRTLSLAYNDFS-GA----VPREIGNLTKLKVLYIGANRLQ-GEIPREFGNLTELEQFSLPT 235 (253)
Q Consensus 179 ~L~~L~L~~n~l~-~~----~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~ 235 (253)
.|+.+.++.+..- +. ....-.....++.+.+++++.. +..-+.+..+++|+.+++-+
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~ 435 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID 435 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence 6666666655321 11 0111223445666666666532 23334455566666655544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.39 E-value=1.1 Score=22.51 Aligned_cols=16 Identities=31% Similarity=0.611 Sum_probs=10.3
Q ss_pred CCCCEEeccCCCCcee
Q 025426 226 TELEQFSLPTNNLQVM 241 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~~ 241 (253)
.+|+.|+++.|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4567777777776543
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=84.34 E-value=0.69 Score=23.20 Aligned_cols=17 Identities=29% Similarity=0.718 Sum_probs=10.6
Q ss_pred CCCEEEccCCCCcCcCch
Q 025426 130 TLKNVSLGKNKLSGQIPT 147 (253)
Q Consensus 130 ~L~~L~l~~n~l~~~~~~ 147 (253)
+|+.|++++|+++ ++|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666666 5554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=75.96 E-value=2.5 Score=21.43 Aligned_cols=14 Identities=29% Similarity=0.510 Sum_probs=11.2
Q ss_pred CCCCEEeccCCCCc
Q 025426 226 TELEQFSLPTNNLQ 239 (253)
Q Consensus 226 ~~L~~L~l~~n~l~ 239 (253)
++|++|||++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46788888888885
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=73.02 E-value=2.4 Score=38.02 Aligned_cols=63 Identities=24% Similarity=0.163 Sum_probs=26.5
Q ss_pred CCeEEEEEeCCCCcccc--CCccCCCCCCCCEEECCCCCCCCcCChhhhc--cCCCCEEEccCCCCc
Q 025426 80 SHRVTVLNISSLNLRGT--IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT--IYTLKNVSLGKNKLS 142 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~l~~n~l~ 142 (253)
.+.|..++|++|++... +...-...++|..|+|++|...-....++.+ ...|++|-+.+|.+.
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 34555555555555411 1111223455555555555221112222222 234455555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.04 E-value=3.1 Score=37.40 Aligned_cols=64 Identities=31% Similarity=0.176 Sum_probs=28.3
Q ss_pred CCCCCCEEECCCCCCCCc--CChhhhccCCCCEEEccCC--CCcCcCchhHhcCCCCccEEEeecCcCC
Q 025426 103 NLSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVSLGKN--KLSGQIPTNICSNLPFLEFLSLSLNMFH 167 (253)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 167 (253)
+.+.+..+.+++|++... +..--...|+|.+|+|++| .+. ..++--..+...|++|-+.||++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~-~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKIS-SESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhc-chhhhhhhcCCCHHHeeecCCccc
Confidence 345555666666655411 1111123456666666666 222 111111112234556666666553
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.21 E-value=7.2 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=21.7
Q ss_pred ECCCCCCCCcCChhhhccCCCCEEEccCCCCc
Q 025426 111 NLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142 (253)
Q Consensus 111 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 142 (253)
||++|+|+...+..|..+++|++|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 46777777545556666777777777777664
No 91
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=51.03 E-value=33 Score=20.93 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=16.7
Q ss_pred CceehhhHHHHHHHHHHHHHHHH
Q 025426 1 MERVHSLRMMSIFLLLHCLIIIS 23 (253)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~ 23 (253)
|.+++..+|+...+++-+++++.
T Consensus 1 ~r~k~~~~mtriVLLISfiIlfg 23 (59)
T PF11119_consen 1 MRRKKNSRMTRIVLLISFIILFG 23 (59)
T ss_pred CCCcccchHHHHHHHHHHHHHHH
Confidence 56677777887777777777665
No 92
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=47.54 E-value=25 Score=30.88 Aligned_cols=129 Identities=24% Similarity=0.218 Sum_probs=73.3
Q ss_pred CeEEEEEeCCCC-ccccCCccC-CCCCCCCEEECCCCCCC--CcCChhhhccCCCCEEEccCCCCcCcC----chhHhcC
Q 025426 81 HRVTVLNISSLN-LRGTIPSQL-GNLSSLQSLNLSCNRLS--GSIPSTIFTIYTLKNVSLGKNKLSGQI----PTNICSN 152 (253)
Q Consensus 81 ~~l~~L~l~~~~-l~~~~~~~~-~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~ 152 (253)
++++.+-+..++ +++.--..+ .+.++|+.+++..+... +.+...-...+.||.|.++++..-..- -...-.+
T Consensus 320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~ 399 (483)
T KOG4341|consen 320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS 399 (483)
T ss_pred CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence 578888888775 332211122 35678888888887653 111122234678899998887642111 0111245
Q ss_pred CCCccEEEeecCcCC-CCCCccCCCCCCcceEeeecCcC-cc-cCCccccCCCCCCeeec
Q 025426 153 LPFLEFLSLSLNMFH-GGIPSTLSNCTYLRTLSLAYNDF-SG-AVPREIGNLTKLKVLYI 209 (253)
Q Consensus 153 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l-~~-~~p~~l~~l~~L~~L~l 209 (253)
+..|+.+.+++++.+ ...-+.+..+++|+.+++-++.- +. .+...-.+++++++..+
T Consensus 400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 677888888888753 23335566777888888876642 11 12222345555555443
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.41 E-value=20 Score=17.45 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=5.8
Q ss_pred CCCCEEEccCC
Q 025426 129 YTLKNVSLGKN 139 (253)
Q Consensus 129 ~~L~~L~l~~n 139 (253)
++|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 94
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=35.53 E-value=23 Score=38.48 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=27.2
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 191 (253)
||++|+|+...+..|..+++|+.|+|.+|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 57899998666678889999999999999876
Done!