Query 025426
Match_columns 253
No_of_seqs 223 out of 2990
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 10:02:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025426.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025426hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 2E-32 7E-37 228.5 16.3 213 34-251 2-222 (313)
2 3rgz_A Protein brassinosteroid 100.0 1.2E-28 4E-33 228.5 15.2 209 33-249 7-246 (768)
3 4fcg_A Uncharacterized protein 100.0 2.2E-28 7.5E-33 205.3 11.8 211 34-250 23-277 (328)
4 4eco_A Uncharacterized protein 100.0 2.5E-28 8.5E-33 221.8 12.0 209 37-250 29-353 (636)
5 4ecn_A Leucine-rich repeat pro 99.9 1E-26 3.4E-31 216.4 10.6 204 36-250 267-595 (876)
6 2o6q_A Variable lymphocyte rec 99.9 2.9E-25 9.9E-30 181.3 17.6 170 81-251 37-206 (270)
7 3m19_A Variable lymphocyte rec 99.9 1.5E-24 5E-29 175.3 16.0 161 80-241 34-194 (251)
8 3rgz_A Protein brassinosteroid 99.9 2.4E-24 8.1E-29 199.6 15.9 86 82-168 467-552 (768)
9 2o6s_A Variable lymphocyte rec 99.9 9.6E-25 3.3E-29 171.4 11.1 179 66-252 4-191 (208)
10 1ozn_A Reticulon 4 receptor; N 99.9 9.8E-24 3.3E-28 173.4 16.6 172 79-251 54-226 (285)
11 4fcg_A Uncharacterized protein 99.9 3.2E-24 1.1E-28 179.9 13.2 167 81-251 127-302 (328)
12 1ogq_A PGIP-2, polygalacturona 99.9 1.5E-24 5.1E-29 180.8 11.1 166 82-250 102-268 (313)
13 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-23 5E-28 172.3 16.7 169 81-250 32-201 (285)
14 3zyj_A Leucine-rich repeat-con 99.9 2.1E-23 7.2E-28 181.6 15.4 168 81-251 88-256 (440)
15 2z80_A TOLL-like receptor 2, v 99.9 2.2E-23 7.5E-28 176.4 13.2 166 81-247 52-219 (353)
16 2z66_A Variable lymphocyte rec 99.9 2.1E-23 7.3E-28 173.0 12.4 181 67-249 5-222 (306)
17 3zyi_A Leucine-rich repeat-con 99.9 5.8E-23 2E-27 179.4 15.5 168 81-251 75-267 (452)
18 3m19_A Variable lymphocyte rec 99.9 2E-22 6.9E-27 162.7 17.0 178 67-251 3-180 (251)
19 3rfs_A Internalin B, repeat mo 99.9 1.7E-22 5.7E-27 165.1 16.2 161 80-243 62-222 (272)
20 3e6j_A Variable lymphocyte rec 99.9 2.2E-22 7.5E-27 160.4 16.3 165 62-243 12-176 (229)
21 2id5_A Lingo-1, leucine rich r 99.9 1.1E-22 3.6E-27 178.7 14.8 170 80-250 31-200 (477)
22 3zyj_A Leucine-rich repeat-con 99.9 3.5E-23 1.2E-27 180.2 10.9 171 79-251 110-280 (440)
23 3rfs_A Internalin B, repeat mo 99.9 5E-22 1.7E-26 162.3 16.0 167 80-251 40-206 (272)
24 1p9a_G Platelet glycoprotein I 99.9 6.7E-22 2.3E-26 163.0 16.1 160 81-244 31-190 (290)
25 2o6q_A Variable lymphocyte rec 99.9 1.1E-21 3.8E-26 160.0 16.9 162 79-241 59-220 (270)
26 2ft3_A Biglycan; proteoglycan, 99.9 9.3E-22 3.2E-26 165.0 15.0 179 67-250 31-264 (332)
27 2z66_A Variable lymphocyte rec 99.9 2.5E-22 8.6E-27 166.5 11.2 167 81-249 78-246 (306)
28 1xku_A Decorin; proteoglycan, 99.9 2.6E-21 9E-26 162.1 17.0 180 67-250 29-240 (330)
29 2z62_A TOLL-like receptor 4, v 99.9 6.8E-22 2.3E-26 161.6 12.7 168 82-250 29-224 (276)
30 2v70_A SLIT-2, SLIT homolog 2 99.9 2.6E-21 8.9E-26 153.2 15.4 155 85-243 15-170 (220)
31 1p9a_G Platelet glycoprotein I 99.9 2E-21 6.9E-26 160.2 15.3 165 80-251 9-173 (290)
32 2v9t_B SLIT homolog 2 protein 99.9 2.6E-21 8.9E-26 153.2 15.2 133 105-238 32-164 (220)
33 1ziw_A TOLL-like receptor 3; i 99.9 1.4E-21 4.9E-26 178.5 15.7 170 80-250 24-195 (680)
34 2z81_A CD282 antigen, TOLL-lik 99.9 6.7E-22 2.3E-26 176.3 13.1 158 81-239 26-185 (549)
35 3zyi_A Leucine-rich repeat-con 99.9 1.8E-21 6E-26 170.0 15.3 171 79-251 97-291 (452)
36 2xwt_C Thyrotropin receptor; s 99.9 8.1E-22 2.8E-26 157.9 12.1 166 82-249 32-228 (239)
37 3t6q_A CD180 antigen; protein- 99.9 1.7E-21 6E-26 175.7 15.1 168 80-248 32-201 (606)
38 3v47_A TOLL-like receptor 5B a 99.9 2.2E-21 7.5E-26 169.2 15.2 90 80-169 78-169 (455)
39 4g8a_A TOLL-like receptor 4; l 99.9 1.4E-21 4.9E-26 176.4 13.7 169 80-249 51-224 (635)
40 3oja_B Anopheles plasmodium-re 99.9 1.7E-21 6E-26 175.7 14.1 112 81-193 75-186 (597)
41 2z80_A TOLL-like receptor 2, v 99.9 1.5E-22 5.3E-27 171.2 6.8 166 78-244 73-240 (353)
42 2v9t_B SLIT homolog 2 protein 99.9 2.9E-21 9.8E-26 153.0 13.6 149 67-216 9-166 (220)
43 2z62_A TOLL-like receptor 4, v 99.9 1.4E-21 4.7E-26 159.8 11.5 163 80-243 51-241 (276)
44 3v47_A TOLL-like receptor 5B a 99.9 2.9E-21 1E-25 168.4 14.2 99 151-249 296-394 (455)
45 2xot_A Amphoterin-induced prot 99.9 1.3E-21 4.5E-26 166.1 11.4 157 82-239 40-202 (361)
46 2o6s_A Variable lymphocyte rec 99.9 1.9E-20 6.6E-25 146.8 17.0 157 83-243 9-165 (208)
47 3o6n_A APL1; leucine-rich repe 99.9 1.4E-20 4.8E-25 161.1 17.2 113 80-193 68-180 (390)
48 3t6q_A CD180 antigen; protein- 99.9 4.9E-21 1.7E-25 172.7 14.3 167 82-248 351-522 (606)
49 3vq2_A TLR4, TOLL-like recepto 99.9 3.6E-21 1.2E-25 173.6 13.3 168 80-248 31-203 (606)
50 2xwt_C Thyrotropin receptor; s 99.9 2.1E-21 7.4E-26 155.4 10.1 149 81-237 80-237 (239)
51 2xot_A Amphoterin-induced prot 99.8 1.1E-20 3.8E-25 160.4 14.7 163 84-250 21-187 (361)
52 4g8a_A TOLL-like receptor 4; l 99.8 1E-20 3.6E-25 170.8 15.2 161 87-251 37-198 (635)
53 3oja_B Anopheles plasmodium-re 99.8 1.3E-20 4.6E-25 169.9 15.5 133 82-215 52-184 (597)
54 2z63_A TOLL-like receptor 4, v 99.8 8.8E-21 3E-25 169.7 13.5 168 80-248 27-199 (570)
55 2ft3_A Biglycan; proteoglycan, 99.8 3.4E-20 1.2E-24 155.5 15.7 166 79-249 76-287 (332)
56 2id5_A Lingo-1, leucine rich r 99.8 2.6E-20 8.9E-25 163.5 15.3 170 81-250 80-296 (477)
57 2v70_A SLIT-2, SLIT homolog 2 99.8 1.9E-20 6.5E-25 148.2 13.0 136 81-217 32-168 (220)
58 3vq2_A TLR4, TOLL-like recepto 99.8 3.2E-20 1.1E-24 167.4 15.6 163 84-250 14-177 (606)
59 1xku_A Decorin; proteoglycan, 99.8 1.4E-20 4.9E-25 157.6 12.4 142 101-247 141-284 (330)
60 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-20 9.4E-25 165.0 14.3 162 79-243 322-485 (520)
61 4eco_A Uncharacterized protein 99.8 1.9E-21 6.6E-26 176.6 7.0 164 79-247 204-397 (636)
62 1wwl_A Monocyte differentiatio 99.8 1.2E-20 4E-25 157.1 10.4 155 81-240 149-310 (312)
63 1wwl_A Monocyte differentiatio 99.8 6.1E-21 2.1E-25 158.8 8.4 158 80-239 94-266 (312)
64 3j0a_A TOLL-like receptor 5; m 99.8 1.7E-20 6E-25 175.4 12.3 174 69-245 14-193 (844)
65 2z63_A TOLL-like receptor 4, v 99.8 8.2E-21 2.8E-25 169.9 8.9 142 101-243 392-535 (570)
66 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.2E-20 1.8E-24 164.8 13.8 161 79-243 351-514 (562)
67 1ziw_A TOLL-like receptor 3; i 99.8 1.5E-19 5E-24 165.2 16.5 167 80-247 404-605 (680)
68 3o6n_A APL1; leucine-rich repe 99.8 1.8E-19 6.1E-24 154.3 15.9 161 79-241 91-310 (390)
69 1h6u_A Internalin H; cell adhe 99.8 2E-19 6.7E-24 149.5 15.2 156 80-250 62-217 (308)
70 4ezg_A Putative uncharacterize 99.8 4.4E-20 1.5E-24 143.6 10.5 151 81-240 44-195 (197)
71 4ecn_A Leucine-rich repeat pro 99.8 1.8E-20 6.2E-25 174.5 9.6 166 79-249 446-641 (876)
72 3oja_A Leucine-rich immune mol 99.8 2.6E-20 8.8E-25 164.1 9.3 155 82-241 35-206 (487)
73 2z7x_B TOLL-like receptor 1, v 99.8 1.4E-19 4.9E-24 160.4 13.1 146 102-251 321-469 (520)
74 3o53_A Protein LRIM1, AGAP0063 99.8 6.3E-20 2.1E-24 153.0 9.9 162 82-250 100-262 (317)
75 3e6j_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 141.3 13.2 137 80-218 39-175 (229)
76 3j0a_A TOLL-like receptor 5; m 99.8 2.4E-19 8.2E-24 167.7 13.6 89 80-168 72-162 (844)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 5.2E-19 1.8E-23 158.3 15.2 146 102-251 350-498 (562)
78 4glp_A Monocyte differentiatio 99.8 4.8E-20 1.6E-24 153.2 7.8 156 82-239 92-264 (310)
79 4glp_A Monocyte differentiatio 99.8 1.7E-19 5.9E-24 149.8 10.9 155 80-240 144-308 (310)
80 1w8a_A SLIT protein; signaling 99.8 5.2E-19 1.8E-23 137.0 12.3 131 84-218 11-142 (192)
81 2z81_A CD282 antigen, TOLL-lik 99.8 2.1E-19 7.3E-24 160.1 11.5 168 68-250 3-172 (549)
82 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 3.9E-23 143.7 14.8 153 80-245 67-219 (291)
83 3oja_A Leucine-rich immune mol 99.8 1.6E-19 5.5E-24 159.0 9.8 161 83-250 101-262 (487)
84 1h6u_A Internalin H; cell adhe 99.8 1.4E-18 4.9E-23 144.3 14.8 155 81-250 41-195 (308)
85 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.7E-23 146.3 14.7 157 81-250 177-333 (347)
86 1h6t_A Internalin B; cell adhe 99.8 6.3E-19 2.1E-23 145.3 12.0 156 81-251 46-201 (291)
87 3o53_A Protein LRIM1, AGAP0063 99.8 1.2E-19 4.2E-24 151.2 7.8 163 80-249 57-236 (317)
88 4b8c_D Glucose-repressible alc 99.8 9.5E-20 3.3E-24 167.5 7.0 203 36-248 130-338 (727)
89 1xeu_A Internalin C; cellular 99.8 7E-19 2.4E-23 142.9 11.0 152 80-245 40-191 (263)
90 2ell_A Acidic leucine-rich nuc 99.8 9.3E-19 3.2E-23 132.5 10.6 136 104-242 23-163 (168)
91 3cvr_A Invasion plasmid antige 99.8 3E-18 1E-22 153.0 14.1 150 80-251 99-255 (571)
92 4ay9_X Follicle-stimulating ho 99.8 1.1E-18 3.8E-23 147.4 10.4 181 68-250 8-226 (350)
93 1m9s_A Internalin B; cell inva 99.8 2.4E-18 8.2E-23 155.0 12.8 155 79-246 63-217 (605)
94 4ezg_A Putative uncharacterize 99.8 3.1E-18 1.1E-22 133.1 11.6 141 102-251 41-182 (197)
95 1w8a_A SLIT protein; signaling 99.8 5.9E-18 2E-22 131.0 12.6 109 82-191 30-139 (192)
96 2wfh_A SLIT homolog 2 protein 99.8 1.2E-17 4E-22 129.5 13.5 128 84-216 13-140 (193)
97 1o6v_A Internalin A; bacterial 99.8 1.1E-17 3.8E-22 146.5 15.1 149 82-243 222-370 (466)
98 2o6r_A Variable lymphocyte rec 99.8 1.4E-17 4.6E-22 127.2 13.6 130 85-218 11-140 (177)
99 2ell_A Acidic leucine-rich nuc 99.8 3.9E-18 1.3E-22 129.1 9.8 137 80-220 23-164 (168)
100 4fmz_A Internalin; leucine ric 99.8 2.3E-17 8E-22 138.8 15.5 140 101-251 173-312 (347)
101 1o6v_A Internalin A; bacterial 99.7 7.9E-18 2.7E-22 147.4 13.0 151 79-242 241-391 (466)
102 1m9s_A Internalin B; cell inva 99.7 9.6E-18 3.3E-22 151.0 13.7 157 80-251 42-198 (605)
103 4b8c_D Glucose-repressible alc 99.7 2.2E-19 7.4E-24 165.1 2.9 158 86-249 206-364 (727)
104 2ast_B S-phase kinase-associat 99.7 2.6E-19 8.9E-24 150.0 2.7 157 81-237 93-258 (336)
105 2wfh_A SLIT homolog 2 protein 99.7 3.2E-17 1.1E-21 127.0 13.8 126 109-239 14-139 (193)
106 2je0_A Acidic leucine-rich nuc 99.7 3E-18 1E-22 127.1 7.3 127 105-234 17-148 (149)
107 2o6r_A Variable lymphocyte rec 99.7 5.4E-17 1.8E-21 123.8 13.5 133 107-243 9-141 (177)
108 1xeu_A Internalin C; cellular 99.7 2.5E-17 8.6E-22 133.7 11.6 153 82-250 20-172 (263)
109 2ast_B S-phase kinase-associat 99.7 7.3E-19 2.5E-23 147.3 2.3 169 81-251 70-248 (336)
110 2je0_A Acidic leucine-rich nuc 99.7 8.4E-18 2.9E-22 124.7 7.5 128 81-211 17-149 (149)
111 3cvr_A Invasion plasmid antige 99.7 2.2E-17 7.7E-22 147.4 11.2 143 82-250 81-230 (571)
112 2ca6_A RAN GTPase-activating p 99.7 8.6E-19 2.9E-23 149.9 1.9 167 80-246 93-298 (386)
113 3bz5_A Internalin-J, INLJ; leu 99.7 2.4E-16 8.2E-21 137.7 16.0 155 79-249 83-256 (457)
114 3bz5_A Internalin-J, INLJ; leu 99.7 3.3E-16 1.1E-20 136.9 14.7 143 81-241 64-206 (457)
115 2ca6_A RAN GTPase-activating p 99.7 5.4E-18 1.9E-22 144.9 3.3 168 79-246 58-268 (386)
116 3goz_A Leucine-rich repeat-con 99.7 6.9E-18 2.4E-22 143.1 3.3 166 82-247 52-246 (362)
117 1dce_A Protein (RAB geranylger 99.7 1E-18 3.5E-23 156.4 -1.9 158 81-245 349-552 (567)
118 3g06_A SSPH2 (leucine-rich rep 99.7 4E-16 1.4E-20 140.8 14.0 89 154-251 221-309 (622)
119 1a9n_A U2A', U2A'; complex (nu 99.7 5.5E-17 1.9E-21 123.7 6.9 130 103-239 17-153 (176)
120 3goz_A Leucine-rich repeat-con 99.7 3.4E-17 1.1E-21 138.9 4.4 162 80-241 21-211 (362)
121 1a9n_A U2A', U2A'; complex (nu 99.7 2E-16 7E-21 120.6 8.3 129 81-216 19-154 (176)
122 4ay9_X Follicle-stimulating ho 99.7 7.3E-16 2.5E-20 130.1 11.7 158 84-244 12-172 (350)
123 1ds9_A Outer arm dynein; leuci 99.6 3.8E-19 1.3E-23 138.4 -8.4 150 83-240 20-186 (198)
124 3g06_A SSPH2 (leucine-rich rep 99.6 3.5E-16 1.2E-20 141.2 8.4 95 81-192 61-155 (622)
125 3g39_A Variable lymphocyte rec 99.6 2.1E-15 7.1E-20 114.4 10.7 105 107-215 11-115 (170)
126 1jl5_A Outer protein YOPM; leu 99.6 5.3E-15 1.8E-19 129.1 14.3 120 105-239 131-250 (454)
127 1jl5_A Outer protein YOPM; leu 99.6 7.4E-15 2.5E-19 128.1 14.2 121 81-216 131-251 (454)
128 1z7x_W Ribonuclease inhibitor; 99.6 4.2E-17 1.4E-21 142.2 -0.1 110 82-191 4-126 (461)
129 1dce_A Protein (RAB geranylger 99.6 4E-15 1.4E-19 133.1 12.5 122 106-233 442-567 (567)
130 2r9u_A Variable lymphocyte rec 99.6 4.6E-15 1.6E-19 112.9 10.7 104 108-215 15-118 (174)
131 1ds9_A Outer arm dynein; leuci 99.6 1.1E-17 3.7E-22 130.1 -4.3 135 104-244 17-158 (198)
132 1z7x_W Ribonuclease inhibitor; 99.6 7.9E-17 2.7E-21 140.5 -0.9 161 81-241 227-413 (461)
133 3g39_A Variable lymphocyte rec 99.6 1E-14 3.5E-19 110.6 10.9 107 83-193 11-117 (170)
134 3sb4_A Hypothetical leucine ri 99.6 3.9E-15 1.3E-19 124.5 8.7 97 153-251 225-322 (329)
135 2r9u_A Variable lymphocyte rec 99.6 1.7E-14 5.8E-19 109.7 11.0 105 84-192 15-119 (174)
136 3un9_A NLR family member X1; l 99.5 8.8E-16 3E-20 130.6 -2.7 169 81-249 72-262 (372)
137 3sb4_A Hypothetical leucine ri 99.4 7.3E-13 2.5E-17 110.7 10.6 103 128-233 225-328 (329)
138 2ifg_A High affinity nerve gro 99.4 6.1E-13 2.1E-17 111.8 9.9 103 109-215 12-116 (347)
139 2ifg_A High affinity nerve gro 99.4 1.6E-12 5.5E-17 109.2 9.7 103 86-192 13-117 (347)
140 3un9_A NLR family member X1; l 99.3 1.6E-13 5.6E-18 116.6 -0.7 140 104-243 71-228 (372)
141 3ogk_B Coronatine-insensitive 99.3 1.7E-12 5.8E-17 116.5 4.3 39 103-141 162-204 (592)
142 3ogk_B Coronatine-insensitive 99.3 4.7E-13 1.6E-17 120.1 -0.2 137 104-241 377-528 (592)
143 4fdw_A Leucine rich hypothetic 99.2 3.1E-10 1E-14 97.3 13.3 161 82-248 158-344 (401)
144 4fdw_A Leucine rich hypothetic 99.2 2.7E-10 9.4E-15 97.6 12.0 163 81-250 180-369 (401)
145 2p1m_B Transport inhibitor res 99.1 2.9E-12 9.9E-17 114.9 -3.0 88 151-239 429-519 (594)
146 2p1m_B Transport inhibitor res 99.0 5.6E-12 1.9E-16 113.1 -3.7 163 81-244 289-499 (594)
147 2ra8_A Uncharacterized protein 98.9 9.3E-10 3.2E-14 92.9 5.5 165 80-247 138-328 (362)
148 1io0_A Tropomodulin; LRR prote 98.8 1.2E-09 4.1E-14 83.6 1.6 63 177-239 92-164 (185)
149 2ra8_A Uncharacterized protein 98.8 3.4E-09 1.2E-13 89.5 4.4 157 81-241 107-294 (362)
150 1io0_A Tropomodulin; LRR prote 98.7 1.1E-09 3.9E-14 83.7 0.3 117 98-215 29-164 (185)
151 3rw6_A Nuclear RNA export fact 98.6 3.3E-09 1.1E-13 85.6 0.0 80 151-232 167-257 (267)
152 3rw6_A Nuclear RNA export fact 98.4 2.6E-07 9E-12 74.4 6.2 96 110-208 148-257 (267)
153 3e4g_A ATP synthase subunit S, 98.3 1.9E-07 6.5E-12 70.3 2.8 86 129-215 61-153 (176)
154 4h09_A Hypothetical leucine ri 98.3 6.5E-06 2.2E-10 69.6 12.7 145 100-250 212-356 (379)
155 4gt6_A Cell surface protein; l 98.3 2.7E-06 9.4E-11 72.4 10.0 133 98-238 258-390 (394)
156 3e4g_A ATP synthase subunit S, 98.3 4.2E-07 1.4E-11 68.4 3.6 84 81-165 61-150 (176)
157 4fs7_A Uncharacterized protein 98.2 9.2E-06 3.1E-10 69.2 11.2 157 83-250 232-388 (394)
158 4h09_A Hypothetical leucine ri 98.1 2.2E-05 7.4E-10 66.3 10.8 140 83-228 219-358 (379)
159 4fs7_A Uncharacterized protein 98.1 1.6E-05 5.5E-10 67.6 9.3 141 81-231 253-393 (394)
160 4gt6_A Cell surface protein; l 97.8 0.00014 4.7E-09 61.8 11.3 111 123-238 259-369 (394)
161 1pgv_A TMD-1, tropomodulin TMD 97.6 1.9E-05 6.6E-10 60.4 2.2 64 176-239 96-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 4.4E-05 1.5E-09 58.4 2.7 88 125-213 66-168 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00064 2.2E-08 48.4 6.2 57 157-215 11-68 (130)
164 3rfe_A Platelet glycoprotein I 97.1 0.002 6.7E-08 45.8 7.1 55 85-141 12-67 (130)
165 2lz0_A Uncharacterized protein 69.0 20 0.00069 23.5 6.6 38 172-210 14-51 (100)
166 2lz0_A Uncharacterized protein 67.3 9.3 0.00032 25.1 4.6 47 189-236 7-53 (100)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2e-32 Score=228.46 Aligned_cols=213 Identities=34% Similarity=0.547 Sum_probs=191.6
Q ss_pred CCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCc--cceeeeCCCC--CeEEEEEeCCCCccc--cCCccCCCCCCC
Q 025426 34 SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDVHS--HRVTVLNISSLNLRG--TIPSQLGNLSSL 107 (253)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~--~~g~~c~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L 107 (253)
.|.+.|..+|+++|..+. +|. .+.+ |..+.++|. |.|+.|+... .+++.|+++++.+.+ .+|..+..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 477889999999999994 665 6777 988888998 9999998543 789999999999998 899999999999
Q ss_pred CEEECCC-CCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426 108 QSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186 (253)
Q Consensus 108 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 186 (253)
++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence 9999995 99998999999999999999999999997888876 889999999999999998899999999999999999
Q ss_pred cCcCcccCCccccCCC-CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 187 YNDFSGAVPREIGNLT-KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 187 ~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++.+|..|..+++
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 9999989999999988 999999999999988888888887 899999999988888887776653
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1.2e-28 Score=228.46 Aligned_cols=209 Identities=26% Similarity=0.378 Sum_probs=143.2
Q ss_pred CCCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCccceeeeCCCCCeEEEEEeCCCCcccc---CC-----------
Q 025426 33 TSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGT---IP----------- 98 (253)
Q Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~---~~----------- 98 (253)
.+..+.|+.+|++||+.+. ||. .+++ |..+.++|.|.||.|+ .++|+.|+++++.+.+. ++
T Consensus 7 ~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 3346679999999999996 777 7888 9888899999999998 47999999999988765 33
Q ss_pred ------------ccCCCCCCCCEEECCCCCCCCcCCh--hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC
Q 025426 99 ------------SQLGNLSSLQSLNLSCNRLSGSIPS--TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN 164 (253)
Q Consensus 99 ------------~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 164 (253)
..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+.+.+|..++..+++|++|++++|
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677788888999998888877777 78888888888888888877777655456777777777777
Q ss_pred cCCCCCCcc---CCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426 165 MFHGGIPST---LSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 165 ~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
.+++..|.. +.++++|++|++++|.+.+..+. ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 776555544 44555555555555544433221 3444455555555554444443 44455555555555555544
Q ss_pred cchhhhhc
Q 025426 242 ILNFLQFY 249 (253)
Q Consensus 242 ~p~~~~~l 249 (253)
+|..+..+
T Consensus 239 ~~~~l~~l 246 (768)
T 3rgz_A 239 FSRAISTC 246 (768)
T ss_dssp HHHHTTTC
T ss_pred ccHHHhcC
Confidence 44444443
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.2e-28 Score=205.30 Aligned_cols=211 Identities=22% Similarity=0.314 Sum_probs=138.9
Q ss_pred CCChhhHHHHHHHHHhcCCCCCccccCCC----CCCCCCCccceeeeC--------CCCCeEEEEEeCCCCccccCCccC
Q 025426 34 SSTITDRDALLALKAHITHDPTNFLAKNW----NTSTPVCNWTGVACD--------VHSHRVTVLNISSLNLRGTIPSQL 101 (253)
Q Consensus 34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w----~~~~~~c~~~g~~c~--------~~~~~l~~L~l~~~~l~~~~~~~~ 101 (253)
.....+..+|..|+..+..++..+... | ......|.|.|+.|. ....+++.|++++|.+. .+|..+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 445578899999999887788777777 8 456789999999884 23467888888888887 667667
Q ss_pred CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCC-----
Q 025426 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSN----- 176 (253)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~----- 176 (253)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 77778888888888777 67777777777777777777777 777665 66667777777766555555544332
Q ss_pred ----CCCcceEeeecCcCcccCCcc-----------------------ccCCCCCCeeecccCcCcccCChhhcCCCCCC
Q 025426 177 ----CTYLRTLSLAYNDFSGAVPRE-----------------------IGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229 (253)
Q Consensus 177 ----l~~L~~L~L~~n~l~~~~p~~-----------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 229 (253)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+.+|..++.+++|+
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 455555555555544 44444 44445555555555554444555555555555
Q ss_pred EEeccCCCCceecchhhhhcc
Q 025426 230 QFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 230 ~L~l~~n~l~~~~p~~~~~l~ 250 (253)
.|++++|++.+.+|..+..++
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~ 277 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLT 277 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCT
T ss_pred EEECCCCCchhhcchhhhcCC
Confidence 555555555555555554443
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=2.5e-28 Score=221.82 Aligned_cols=209 Identities=21% Similarity=0.328 Sum_probs=183.1
Q ss_pred hhhHHHHHHHHHhcCCCCCcccc------CCCCCCCCCCcc---ceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCC
Q 025426 37 ITDRDALLALKAHITHDPTNFLA------KNWNTSTPVCNW---TGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSL 107 (253)
Q Consensus 37 ~~~~~~l~~~~~~~~~~~~~~l~------~~w~~~~~~c~~---~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L 107 (253)
..|..+|..++..+.+..+.... ..|..+.++|.| .||.|+.. ++|+.|+|+++++.|.+|+.+..+++|
T Consensus 29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L 107 (636)
T 4eco_A 29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL 107 (636)
T ss_dssp HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence 35889999999988544332211 149999999999 99999854 789999999999999999999999999
Q ss_pred CEEECCCCCC----------------------------------------------------------------------
Q 025426 108 QSLNLSCNRL---------------------------------------------------------------------- 117 (253)
Q Consensus 108 ~~L~l~~n~l---------------------------------------------------------------------- 117 (253)
+.|++++|.+
T Consensus 108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~ 187 (636)
T 4eco_A 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ 187 (636)
T ss_dssp CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence 9999998843
Q ss_pred --------CCcCChhhhccCCCCEEEccCCCCcCc-----------------CchhHhc--CCCCccEEEeecCcCCCCC
Q 025426 118 --------SGSIPSTIFTIYTLKNVSLGKNKLSGQ-----------------IPTNICS--NLPFLEFLSLSLNMFHGGI 170 (253)
Q Consensus 118 --------~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~ 170 (253)
++ +|..+.++++|++|++++|.+++. +|+.+ . .+++|++|++++|.+.+.+
T Consensus 188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSC
T ss_pred hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccC
Confidence 23 788899999999999999999965 88887 6 8999999999999999999
Q ss_pred CccCCCCCCcceEeeecCc-Ccc-cCCccccCC------CCCCeeecccCcCcccCCh--hhcCCCCCCEEeccCCCCce
Q 025426 171 PSTLSNCTYLRTLSLAYND-FSG-AVPREIGNL------TKLKVLYIGANRLQGEIPR--EFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 171 ~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~ 240 (253)
|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.++ .+|. .++.+++|+.|++++|.++|
T Consensus 266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g 344 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG 344 (636)
T ss_dssp CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence 9999999999999999998 988 788888776 89999999999999 7888 89999999999999999998
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.+| .+..++
T Consensus 345 ~ip-~~~~l~ 353 (636)
T 4eco_A 345 KLP-AFGSEI 353 (636)
T ss_dssp ECC-CCEEEE
T ss_pred chh-hhCCCC
Confidence 888 666554
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=1e-26 Score=216.43 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=170.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCccccCCCCCCC-----CC--Ccc------------ceeeeCCCCCeEEEEEeCCCCcccc
Q 025426 36 TITDRDALLALKAHITHDPTNFLAKNWNTST-----PV--CNW------------TGVACDVHSHRVTVLNISSLNLRGT 96 (253)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~-----~~--c~~------------~g~~c~~~~~~l~~L~l~~~~l~~~ 96 (253)
...|..+|++++..+. +| + |..+. ++ |.| .|+.|+. ..+|+.|+|+++++.|.
T Consensus 267 ~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 267 YIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp HHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred chHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 4469999999999984 55 3 65443 44 999 9999985 37899999999999999
Q ss_pred CCccCCCCCCCCEEEC-CCCCCCCc-------------------------------------------------------
Q 025426 97 IPSQLGNLSSLQSLNL-SCNRLSGS------------------------------------------------------- 120 (253)
Q Consensus 97 ~~~~~~~l~~L~~L~l-~~n~l~~~------------------------------------------------------- 120 (253)
+|+.+..+++|+.|++ ++|.+.|.
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 66643222
Q ss_pred ---------------------CChhhhccCCCCEEEccCCCCcC-----------------cCchhH-hcCCCCccEEEe
Q 025426 121 ---------------------IPSTIFTIYTLKNVSLGKNKLSG-----------------QIPTNI-CSNLPFLEFLSL 161 (253)
Q Consensus 121 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~l~~L~~L~l 161 (253)
+|..+.++++|++|++++|.+++ .+|+.+ |..+++|++|++
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L 498 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence 77889999999999999999996 388877 338999999999
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCc-Ccc-cCCccccCCC-------CCCeeecccCcCcccCCh--hhcCCCCCCE
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYND-FSG-AVPREIGNLT-------KLKVLYIGANRLQGEIPR--EFGNLTELEQ 230 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~ 230 (253)
++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+.+++ +|++|++++|.++ .+|. .++.+++|+.
T Consensus 499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~ 577 (876)
T 4ecn_A 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL 577 (876)
T ss_dssp ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence 9999999999999999999999999998 887 6777665544 8999999999888 7777 8888888888
Q ss_pred EeccCCCCceecchhhhhcc
Q 025426 231 FSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 231 L~l~~n~l~~~~p~~~~~l~ 250 (253)
|++++|.++ .+| .|..++
T Consensus 578 L~Ls~N~l~-~lp-~~~~L~ 595 (876)
T 4ecn_A 578 LDCVHNKVR-HLE-AFGTNV 595 (876)
T ss_dssp EECTTSCCC-BCC-CCCTTS
T ss_pred EECCCCCcc-cch-hhcCCC
Confidence 888888888 555 555544
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.9e-25 Score=181.28 Aligned_cols=170 Identities=25% Similarity=0.280 Sum_probs=143.9
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEE
Confidence 45888999999988666678889999999999999998555556678999999999999998 77777778889999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR 195 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence 99999987777778889999999999999986666668888999999999999987777778889999999999999998
Q ss_pred ecchhhhhccc
Q 025426 241 MILNFLQFYSS 251 (253)
Q Consensus 241 ~~p~~~~~l~~ 251 (253)
.++..+..+++
T Consensus 196 ~~~~~~~~l~~ 206 (270)
T 2o6q_A 196 VPEGAFDSLEK 206 (270)
T ss_dssp CCTTTTTTCTT
T ss_pred CCHHHhccccC
Confidence 88877776653
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.5e-24 Score=175.27 Aligned_cols=161 Identities=23% Similarity=0.292 Sum_probs=146.5
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+..++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEE
Confidence 356899999999999888888999999999999999999888888999999999999999998 7777777899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 99999999666677899999999999999999777778999999999999999999877888999999999999999998
Q ss_pred ee
Q 025426 240 VM 241 (253)
Q Consensus 240 ~~ 241 (253)
..
T Consensus 193 c~ 194 (251)
T 3m19_A 193 CS 194 (251)
T ss_dssp TT
T ss_pred CC
Confidence 76
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=2.4e-24 Score=199.62 Aligned_cols=86 Identities=36% Similarity=0.556 Sum_probs=44.2
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++
T Consensus 467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L 545 (768)
T 3rgz_A 467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDL 545 (768)
T ss_dssp TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEEC
T ss_pred CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEEC
Confidence 44555555555555555555555555555555555555555555555555555555555554444444 44444555555
Q ss_pred ecCcCCC
Q 025426 162 SLNMFHG 168 (253)
Q Consensus 162 ~~n~~~~ 168 (253)
++|.+++
T Consensus 546 s~N~l~g 552 (768)
T 3rgz_A 546 NTNLFNG 552 (768)
T ss_dssp CSSEEES
T ss_pred CCCccCC
Confidence 5444443
No 9
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.6e-25 Score=171.39 Aligned_cols=179 Identities=20% Similarity=0.241 Sum_probs=152.9
Q ss_pred CCCCccceeeeCC---------CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEc
Q 025426 66 TPVCNWTGVACDV---------HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSL 136 (253)
Q Consensus 66 ~~~c~~~g~~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l 136 (253)
...|.|.++.|.. ..++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 3458888888862 2456899999999999766777889999999999999998666667788999999999
Q ss_pred cCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 216 (253)
++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 84 s~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 84 STNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 999998 7777766889999999999999987666778899999999999999997666678889999999999998874
Q ss_pred cCChhhcCCCCCCEEeccCCCCceecchhhhhcccC
Q 025426 217 EIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252 (253)
Q Consensus 217 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~ 252 (253)
. +++++.|++..|+++|.+|++++.+++.
T Consensus 163 ~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~~ 191 (208)
T 2o6s_A 163 T-------CPGIRYLSEWINKHSGVVRNSAGSVAPD 191 (208)
T ss_dssp C-------TTTTHHHHHHHHHCTTTBBCTTSSBCTT
T ss_pred C-------CCCHHHHHHHHHhCCceeeccCccccCC
Confidence 3 4578999999999999999999888753
No 10
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=9.8e-24 Score=173.39 Aligned_cols=172 Identities=24% Similarity=0.271 Sum_probs=136.5
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE 157 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 157 (253)
..++++.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+++..+..+++|+
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~ 132 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ 132 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCC
Confidence 34678888888888887777778888888888888886 66555777888888888888888887 55444447788888
Q ss_pred EEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426 158 FLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237 (253)
Q Consensus 158 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 237 (253)
+|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus 133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 88888888876666667888888888888888886666668888888888888888887778888888888888888888
Q ss_pred Cceecchhhhhccc
Q 025426 238 LQVMILNFLQFYSS 251 (253)
Q Consensus 238 l~~~~p~~~~~l~~ 251 (253)
+++.++..+..+++
T Consensus 213 l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 213 LSALPTEALAPLRA 226 (285)
T ss_dssp CSCCCHHHHTTCTT
T ss_pred CCcCCHHHcccCcc
Confidence 88888777776654
No 11
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=3.2e-24 Score=179.92 Aligned_cols=167 Identities=18% Similarity=0.260 Sum_probs=141.5
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhc---------cCCCCEEEccCCCCcCcCchhHhc
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT---------IYTLKNVSLGKNKLSGQIPTNICS 151 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~ 151 (253)
++++.|++++|.+. .+|..+..+++|+.|++++|++.+.+|..+.. +++|++|++++|.++ .+|..+ .
T Consensus 127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~ 203 (328)
T 4fcg_A 127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-A 203 (328)
T ss_dssp TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-G
T ss_pred CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-c
Confidence 45677777777776 66666777777777777777666666665543 777888888888877 777775 7
Q ss_pred CCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426 152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQF 231 (253)
Q Consensus 152 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (253)
.+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus 204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 282 (328)
T 4fcg_A 204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282 (328)
T ss_dssp GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence 8899999999999998 466678899999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCceecchhhhhccc
Q 025426 232 SLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 232 ~l~~n~l~~~~p~~~~~l~~ 251 (253)
++++|++.+.+|+++..+++
T Consensus 283 ~L~~n~~~~~iP~~l~~L~~ 302 (328)
T 4fcg_A 283 DLRGCVNLSRLPSLIAQLPA 302 (328)
T ss_dssp ECTTCTTCCCCCGGGGGSCT
T ss_pred eCCCCCchhhccHHHhhccC
Confidence 99999999999999999875
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=1.5e-24 Score=180.82 Aligned_cols=166 Identities=25% Similarity=0.414 Sum_probs=78.5
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCC-CccEEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP-FLEFLS 160 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~ 160 (253)
++++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+ ..+. +|++|+
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~ 180 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMT 180 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEE
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEE
Confidence 34444444444444444444444444444444444444444444444555555555555444444444 3333 444444
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++
T Consensus 181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 444444433343333333 44444444444444444444455555555555554433332 4445555555555555555
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.+|.++..++
T Consensus 259 ~~p~~l~~l~ 268 (313)
T 1ogq_A 259 TLPQGLTQLK 268 (313)
T ss_dssp CCCGGGGGCT
T ss_pred cCChHHhcCc
Confidence 5555555443
No 13
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.5e-23 Score=172.32 Aligned_cols=169 Identities=17% Similarity=0.168 Sum_probs=108.0
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC-CcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L 159 (253)
++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .+++..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence 456666666666665555566666666666666666665556666666666666666665 54 4444334666666666
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 190 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence 66666666555566666666666666666666554555666666666666666666554555666666666666666666
Q ss_pred eecchhhhhcc
Q 025426 240 VMILNFLQFYS 250 (253)
Q Consensus 240 ~~~p~~~~~l~ 250 (253)
+..|..+..++
T Consensus 191 ~~~~~~~~~l~ 201 (285)
T 1ozn_A 191 HVHPHAFRDLG 201 (285)
T ss_dssp EECTTTTTTCT
T ss_pred ccCHhHccCcc
Confidence 66666665544
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=181.60 Aligned_cols=168 Identities=24% Similarity=0.316 Sum_probs=111.3
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.+.+..+..|.++++|+.|++++|.++...+..+..+++|++|++++|.+. .++...|..+++|++|+
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeC
Confidence 45566666666665555555566666666666666665444445555666666666666665 55554445666666666
Q ss_pred eecCc-CCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 161 LSLNM-FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 161 l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
+++|. +....+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.++
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 244 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ 244 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence 66633 33223345667777777777777777 344 4667788888888888888777888888888888888888888
Q ss_pred eecchhhhhccc
Q 025426 240 VMILNFLQFYSS 251 (253)
Q Consensus 240 ~~~p~~~~~l~~ 251 (253)
+..+..|.++++
T Consensus 245 ~~~~~~~~~l~~ 256 (440)
T 3zyj_A 245 VIERNAFDNLQS 256 (440)
T ss_dssp EECTTSSTTCTT
T ss_pred EEChhhhcCCCC
Confidence 888887776654
No 15
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=2.2e-23 Score=176.39 Aligned_cols=166 Identities=23% Similarity=0.271 Sum_probs=125.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
+++++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence 46788888888888666667788888888888888887666777888888888888888887 67776557788888888
Q ss_pred eecCcCCCCCC-ccCCCCCCcceEeeecC-cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 161 LSLNMFHGGIP-STLSNCTYLRTLSLAYN-DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 161 l~~n~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
+++|.++...+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus 131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 210 (353)
T 2z80_A 131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH 210 (353)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence 88888874333 36777888888888887 46655566777788888888888888777777787777778888877777
Q ss_pred ceecchhhh
Q 025426 239 QVMILNFLQ 247 (253)
Q Consensus 239 ~~~~p~~~~ 247 (253)
+..++..+.
T Consensus 211 ~~~~~~~~~ 219 (353)
T 2z80_A 211 ILLLEIFVD 219 (353)
T ss_dssp TTHHHHHHH
T ss_pred ccchhhhhh
Confidence 655544443
No 16
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=2.1e-23 Score=172.99 Aligned_cols=181 Identities=23% Similarity=0.290 Sum_probs=104.7
Q ss_pred CCCccceeeeCC---------CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--CChhhhccCCCCEEE
Q 025426 67 PVCNWTGVACDV---------HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVS 135 (253)
Q Consensus 67 ~~c~~~g~~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ 135 (253)
..|.|.++.|.. .++++++|++++|.++...+..|..+++|+.|++++|.+... .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 447777777761 234688899999988844444578888888888888887622 245555566666666
Q ss_pred ccCCCCcCcCchhHhcCCCCccEEEeecCcCC-------------------------CCCCccCCCCCCcceEeeecCcC
Q 025426 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH-------------------------GGIPSTLSNCTYLRTLSLAYNDF 190 (253)
Q Consensus 136 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~L~~n~l 190 (253)
+++|.+. .+|..+ ..+++|++|++++|.++ +..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666655 444433 44555555555555544 33344444444555555555544
Q ss_pred cc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426 191 SG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 191 ~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
.+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence 43 244445555555555555555554445555555555555555555555555444433
No 17
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=5.8e-23 Score=179.40 Aligned_cols=168 Identities=20% Similarity=0.217 Sum_probs=108.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|++++|++++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+++..|..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence 35666666666666655666666666666666666666555566666666666666666666 55555445666666666
Q ss_pred eecCcCCCCCCc-------------------------cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426 161 LSLNMFHGGIPS-------------------------TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 161 l~~n~~~~~~~~-------------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
+++|.++...+. .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence 666666533333 34555566666666666653 23 3556667777777777777
Q ss_pred ccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 216 GEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 216 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+..|..|..+++|+.|++++|.+++..|..|.++++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 267 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS 267 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence 666777777777888888888777777777766553
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.90 E-value=2e-22 Score=162.67 Aligned_cols=178 Identities=24% Similarity=0.287 Sum_probs=156.3
Q ss_pred CCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCc
Q 025426 67 PVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIP 146 (253)
Q Consensus 67 ~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 146 (253)
.++.|.|..|. ...++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++ .++
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~ 75 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS 75 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCC
T ss_pred cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccC
Confidence 35678888884 34568999999998 6776665 68999999999999888888999999999999999999 666
Q ss_pred hhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCC
Q 025426 147 TNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLT 226 (253)
Q Consensus 147 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 226 (253)
+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|+.++
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 66668999999999999999977778889999999999999999977677788999999999999999977777899999
Q ss_pred CCCEEeccCCCCceecchhhhhccc
Q 025426 227 ELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 227 ~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+|+.|++++|++++.++..+..+++
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~ 180 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGK 180 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCC
Confidence 9999999999999999988877654
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=1.7e-22 Score=165.08 Aligned_cols=161 Identities=26% Similarity=0.307 Sum_probs=142.1
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEE
Confidence 4789999999999985 3 46888999999999999999777777889999999999999998 7777666889999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 99999998776777889999999999999999777777889999999999999999888888999999999999999887
Q ss_pred eecc
Q 025426 240 VMIL 243 (253)
Q Consensus 240 ~~~p 243 (253)
+..|
T Consensus 219 ~~~~ 222 (272)
T 3rfs_A 219 CTCP 222 (272)
T ss_dssp CCTT
T ss_pred ccCc
Confidence 6655
No 20
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=2.2e-22 Score=160.37 Aligned_cols=165 Identities=25% Similarity=0.325 Sum_probs=130.5
Q ss_pred CCCCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCC
Q 025426 62 WNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141 (253)
Q Consensus 62 w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 141 (253)
|..+...|.|+++.|. ++++. .+|..+. ++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 12 ~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 12 ACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp CCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 6677788999888885 33344 5555443 7888888888888877777888888888888888888
Q ss_pred cCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh
Q 025426 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE 221 (253)
Q Consensus 142 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~ 221 (253)
. .++...|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 77 G-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred C-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 6 777776678888888888888888666666788888888888888888 67777888888888888888888666677
Q ss_pred hcCCCCCCEEeccCCCCceecc
Q 025426 222 FGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 222 ~~~l~~L~~L~l~~n~l~~~~p 243 (253)
+..+++|+.|++++|++....+
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTTBG
T ss_pred HhCCCCCCEEEeeCCCccCCcc
Confidence 8888888888888888875543
No 21
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.89 E-value=1.1e-22 Score=178.71 Aligned_cols=170 Identities=18% Similarity=0.238 Sum_probs=146.2
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+.+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|...|..+++|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 356889999999998777888889999999999999998777888889999999999999998 7887777888999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 99999988777888888999999999999988777888888899999999999888766677888888999999998888
Q ss_pred eecchhhhhcc
Q 025426 240 VMILNFLQFYS 250 (253)
Q Consensus 240 ~~~p~~~~~l~ 250 (253)
+..+..|..++
T Consensus 190 ~~~~~~~~~l~ 200 (477)
T 2id5_A 190 AIRDYSFKRLY 200 (477)
T ss_dssp EECTTCSCSCT
T ss_pred EeChhhcccCc
Confidence 88877766554
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.89 E-value=3.5e-23 Score=180.20 Aligned_cols=171 Identities=23% Similarity=0.273 Sum_probs=132.3
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
..++++.|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|++|++++|...+.++...|..+++|++
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~ 189 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence 34678888888888886656667888888888888888876666677788888888888855444777766677888888
Q ss_pred EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|++++|.++ .+| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus 190 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp EECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred ecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 888888887 444 367778888888888888877777888888888888888888877777788888888888888888
Q ss_pred ceecchhhhhccc
Q 025426 239 QVMILNFLQFYSS 251 (253)
Q Consensus 239 ~~~~p~~~~~l~~ 251 (253)
++.++..|..+++
T Consensus 268 ~~~~~~~~~~l~~ 280 (440)
T 3zyj_A 268 TLLPHDLFTPLHH 280 (440)
T ss_dssp CCCCTTTTSSCTT
T ss_pred CccChhHhccccC
Confidence 8877777766543
No 23
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=5e-22 Score=162.28 Aligned_cols=167 Identities=23% Similarity=0.281 Sum_probs=148.3
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.|+++++.+. .++ .+..+++|+.|++++|.+.+ . ..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEE
Confidence 357899999999987 333 47889999999999999985 3 47889999999999999998 7777766899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 99999999777777899999999999999999777777899999999999999999877888899999999999999999
Q ss_pred eecchhhhhccc
Q 025426 240 VMILNFLQFYSS 251 (253)
Q Consensus 240 ~~~p~~~~~l~~ 251 (253)
+.+|..+..+++
T Consensus 195 ~~~~~~~~~l~~ 206 (272)
T 3rfs_A 195 SVPDGVFDRLTS 206 (272)
T ss_dssp CCCTTTTTTCTT
T ss_pred ccCHHHHhCCcC
Confidence 999988877654
No 24
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.7e-22 Score=163.05 Aligned_cols=160 Identities=24% Similarity=0.229 Sum_probs=127.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
..++.|++++|.+++..+..+..+++|+.|++++|.+++. +.. ..+++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhh-ccCCCCCEEE
Confidence 5688888888888877777888888888888888888743 332 67788888888888887 777655 7788888888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|+++.
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 186 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT 186 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence 88888886666778888888888888888886666667788888888888888886666667888888888888888885
Q ss_pred ecch
Q 025426 241 MILN 244 (253)
Q Consensus 241 ~~p~ 244 (253)
+++.
T Consensus 187 ip~~ 190 (290)
T 1p9a_G 187 IPKG 190 (290)
T ss_dssp CCTT
T ss_pred cChh
Confidence 5443
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.1e-21 Score=159.97 Aligned_cols=162 Identities=22% Similarity=0.306 Sum_probs=144.5
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
..++++.|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+++..+..+++|++
T Consensus 59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~ 137 (270)
T 2o6q_A 59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY 137 (270)
T ss_dssp SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCE
Confidence 4578999999999999666666789999999999999999766677889999999999999998 777766689999999
Q ss_pred EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus 138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 99999999966667789999999999999999977777789999999999999999977777899999999999999998
Q ss_pred cee
Q 025426 239 QVM 241 (253)
Q Consensus 239 ~~~ 241 (253)
...
T Consensus 218 ~c~ 220 (270)
T 2o6q_A 218 DCT 220 (270)
T ss_dssp CCS
T ss_pred eCC
Confidence 654
No 26
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=9.3e-22 Score=165.04 Aligned_cols=179 Identities=20% Similarity=0.216 Sum_probs=116.8
Q ss_pred CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426 67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137 (253)
Q Consensus 67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 137 (253)
..|.+..+.|. ...++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 44678887775 123568899999999887777788889999999999999887778888888888888888
Q ss_pred CCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcC---------------------------
Q 025426 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF--------------------------- 190 (253)
Q Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l--------------------------- 190 (253)
+|.+. .+|..++ ++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence 88887 6666442 5566666666665544344455555555555555544
Q ss_pred -------------------cccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 191 -------------------SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 191 -------------------~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..++
T Consensus 187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 3333344445555555666666555544555556666666666666665 3444444443
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=2.5e-22 Score=166.54 Aligned_cols=167 Identities=19% Similarity=0.247 Sum_probs=113.0
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
++++.|++++|.+. .++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++|++|
T Consensus 78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEE
T ss_pred cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEE
Confidence 45666777776665 345556667777777777777664333 456667777777777777763 333333667777777
Q ss_pred EeecCcCCC-CCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 160 SLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 160 ~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 777777764 4566677777777777777777766666777777777777777777765555677777777777777777
Q ss_pred ceecchhhhhc
Q 025426 239 QVMILNFLQFY 249 (253)
Q Consensus 239 ~~~~p~~~~~l 249 (253)
++.+|..+..+
T Consensus 236 ~~~~~~~~~~~ 246 (306)
T 2z66_A 236 MTSKKQELQHF 246 (306)
T ss_dssp CBCSSSSCCCC
T ss_pred cccCHHHHHhh
Confidence 77766665554
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=2.6e-21 Score=162.09 Aligned_cols=180 Identities=18% Similarity=0.279 Sum_probs=109.5
Q ss_pred CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426 67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137 (253)
Q Consensus 67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 137 (253)
..|.++.+.|. ...+.++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 45677777775 123567888888888887666678888888888888888887778888888888888888
Q ss_pred CCCCcCcCchhH---------------------hcCCCCccEEEeecCcCCC--CCCccCCCCCCcceEeeecCcCcccC
Q 025426 138 KNKLSGQIPTNI---------------------CSNLPFLEFLSLSLNMFHG--GIPSTLSNCTYLRTLSLAYNDFSGAV 194 (253)
Q Consensus 138 ~n~l~~~~~~~~---------------------~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~ 194 (253)
+|.++ .+|..+ +..+++|++|++++|.++. ..+..+..+++|++|++++|.++ .+
T Consensus 109 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l 186 (330)
T 1xku_A 109 KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI 186 (330)
T ss_dssp SSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred CCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cC
Confidence 88776 555433 3445555555555555432 33344444555555555444444 22
Q ss_pred CccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 195 PREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 195 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
|..+. ++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+..++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 22221 3455555555555544455555556666666666666555555554443
No 29
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=6.8e-22 Score=161.61 Aligned_cols=168 Identities=20% Similarity=0.193 Sum_probs=99.3
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
.++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence 4666666666666555555666666666666666666544555666666666666666665 444333356666666666
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCcccCChhhcCC---------------
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGEIPREFGNL--------------- 225 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--------------- 225 (253)
++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 66666544444566666666666666666542 35566666666666666666654433333322
Q ss_pred ------------CCCCEEeccCCCCceecchhhhhcc
Q 025426 226 ------------TELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 226 ------------~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
.+|+.|++++|.+++.++..|..++
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~ 224 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT 224 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence 2566666666666666665555544
No 30
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.87 E-value=2.6e-21 Score=153.23 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=131.3
Q ss_pred EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
.++++++.++ .+|..+. ..++.|++++|.+++..+ ..+..+++|++|++++|.++ .+++..|..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence 6888888887 5666553 457899999999986644 45788999999999999998 66665568899999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|++....+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 99987777788999999999999999998888889999999999999999998878899999999999999999875443
No 31
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=2e-21 Score=160.16 Aligned_cols=165 Identities=24% Similarity=0.322 Sum_probs=147.4
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.+++++++++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++ .++.. ..+++|++|
T Consensus 9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L 82 (290)
T 1p9a_G 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL 82 (290)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEE
Confidence 367899999999998 6676554 68999999999999878889999999999999999998 66653 678999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus 83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 99999998 77888899999999999999999777788999999999999999999877888999999999999999999
Q ss_pred eecchhhhhccc
Q 025426 240 VMILNFLQFYSS 251 (253)
Q Consensus 240 ~~~p~~~~~l~~ 251 (253)
+.++..|..+++
T Consensus 162 ~l~~~~~~~l~~ 173 (290)
T 1p9a_G 162 ELPAGLLNGLEN 173 (290)
T ss_dssp CCCTTTTTTCTT
T ss_pred ccCHHHhcCcCC
Confidence 888887776654
No 32
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.87 E-value=2.6e-21 Score=153.22 Aligned_cols=133 Identities=20% Similarity=0.235 Sum_probs=64.8
Q ss_pred CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426 105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS 184 (253)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 184 (253)
++++.|++++|.+++..+..+..+++|++|++++|.++ .+++..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence 34555555555554333334444555555555555554 33222224455555555555555433333344455555555
Q ss_pred eecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
+++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555555544444455555555555555555544444455555555555555544
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.87 E-value=1.4e-21 Score=178.51 Aligned_cols=170 Identities=23% Similarity=0.248 Sum_probs=154.8
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+.+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++ .+|+..|..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence 357999999999999777778999999999999999999888999999999999999999998 8888766899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhc--CCCCCCEEeccCCC
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFG--NLTELEQFSLPTNN 237 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~ 237 (253)
++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+. .+++|+.|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 9999999877778899999999999999999988888899999999999999999977777664 56899999999999
Q ss_pred Cceecchhhhhcc
Q 025426 238 LQVMILNFLQFYS 250 (253)
Q Consensus 238 l~~~~p~~~~~l~ 250 (253)
+++.+|..+..++
T Consensus 183 l~~~~~~~~~~l~ 195 (680)
T 1ziw_A 183 IKEFSPGCFHAIG 195 (680)
T ss_dssp CCCBCTTGGGGSS
T ss_pred ccccChhhhhhhh
Confidence 9999998887654
No 34
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=6.7e-22 Score=176.34 Aligned_cols=158 Identities=21% Similarity=0.288 Sum_probs=133.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
+++++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+++..+..+++|++|+
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence 57999999999999888888999999999999999999877888999999999999999998 66666558999999999
Q ss_pred eecCcCCC-CCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 161 LSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 161 l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
+++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|+.|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 99999986 356778999999999999998443444 6788999999999999999887888777766666666665555
Q ss_pred c
Q 025426 239 Q 239 (253)
Q Consensus 239 ~ 239 (253)
.
T Consensus 185 ~ 185 (549)
T 2z81_A 185 A 185 (549)
T ss_dssp T
T ss_pred c
Confidence 4
No 35
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=1.8e-21 Score=170.00 Aligned_cols=171 Identities=22% Similarity=0.298 Sum_probs=135.0
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCc----------------
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS---------------- 142 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---------------- 142 (253)
..++++.|++++|.+.+..+..|.++++|+.|++++|.++...+..+..+++|++|++++|.+.
T Consensus 97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 176 (452)
T 3zyi_A 97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176 (452)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence 3456777777777777666666777777777777777776555555666667777777666665
Q ss_pred --------CcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC
Q 025426 143 --------GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214 (253)
Q Consensus 143 --------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l 214 (253)
+.++...|..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+
T Consensus 177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l 254 (452)
T 3zyi_A 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254 (452)
T ss_dssp ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence 12333345667788888888888874 34 478899999999999999988899999999999999999999
Q ss_pred cccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 215 QGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 215 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
++..+..|..+++|+.|++++|++++.++..|..+++
T Consensus 255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 291 (452)
T 3zyi_A 255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY 291 (452)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence 9888999999999999999999999999888877654
No 36
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.1e-22 Score=157.89 Aligned_cols=166 Identities=18% Similarity=0.254 Sum_probs=84.0
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L 159 (253)
+++.|++++|++++..+..|..+++|+.|++++|. ++...+..+..+++|++|++++ |.++ .+++..|..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence 45555555555554444445555555555555554 4433333444555555555554 5554 4444333445555555
Q ss_pred EeecCc--------------------------CCCCCCccCCCCCCcc-eEeeecCcCcccCCccccCCCCCCeeecccC
Q 025426 160 SLSLNM--------------------------FHGGIPSTLSNCTYLR-TLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212 (253)
Q Consensus 160 ~l~~n~--------------------------~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n 212 (253)
++++|. +++..+..|..+++|+ +|++++|.++ .+|......++|+.|++++|
T Consensus 111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence 555554 4433333455555555 5555555555 23322222255556666666
Q ss_pred c-CcccCChhhcCC-CCCCEEeccCCCCceecchhhhhc
Q 025426 213 R-LQGEIPREFGNL-TELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 213 ~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
+ +++..+..|..+ ++|+.|++++|++++.++..+..+
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L 228 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL 228 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccCChhHhccC
Confidence 3 554444555566 666666666666665555544444
No 37
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.87 E-value=1.7e-21 Score=175.67 Aligned_cols=168 Identities=19% Similarity=0.075 Sum_probs=151.0
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+..++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEe
Confidence 457899999999999888999999999999999999999888999999999999999999998444544 4899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC--EEeccCCC
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE--QFSLPTNN 237 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~ 237 (253)
++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ .|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999999976678899999999999999999975545555699999999999999988889999999999 99999999
Q ss_pred Cceecchhhhh
Q 025426 238 LQVMILNFLQF 248 (253)
Q Consensus 238 l~~~~p~~~~~ 248 (253)
+++.+|..+..
T Consensus 191 l~~~~~~~~~~ 201 (606)
T 3t6q_A 191 IAGIEPGAFDS 201 (606)
T ss_dssp CCEECTTTTTT
T ss_pred cCccChhHhhh
Confidence 99999987754
No 38
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.87 E-value=2.2e-21 Score=169.17 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=52.7
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChh--hhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPST--IFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE 157 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 157 (253)
.+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..|..++..+++|+
T Consensus 78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 157 (455)
T 3v47_A 78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH 157 (455)
T ss_dssp CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence 345666666666666555666666666666666666665433333 555666666666666665433444345556666
Q ss_pred EEEeecCcCCCC
Q 025426 158 FLSLSLNMFHGG 169 (253)
Q Consensus 158 ~L~l~~n~~~~~ 169 (253)
+|++++|.+++.
T Consensus 158 ~L~L~~n~l~~~ 169 (455)
T 3v47_A 158 VLDLTFNKVKSI 169 (455)
T ss_dssp EEECTTCCBSCC
T ss_pred EEeCCCCccccc
Confidence 666665555443
No 39
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=1.4e-21 Score=176.45 Aligned_cols=169 Identities=18% Similarity=0.159 Sum_probs=144.6
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+..+++|||++|.|++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|+++ .+|+..|.++.+|++|
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 129 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence 357899999999999777788999999999999999999777778999999999999999998 8888877999999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCC----CCEEecc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTE----LEQFSLP 234 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~l~ 234 (253)
++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.+ ...++++
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 999999987666789999999999999999875 35778888999999999999998877777765443 3478899
Q ss_pred CCCCceecchhhhhc
Q 025426 235 TNNLQVMILNFLQFY 249 (253)
Q Consensus 235 ~n~l~~~~p~~~~~l 249 (253)
.|.++...+..+..+
T Consensus 210 ~n~l~~i~~~~~~~~ 224 (635)
T 4g8a_A 210 LNPMNFIQPGAFKEI 224 (635)
T ss_dssp TCCCCEECTTTTTTC
T ss_pred cCcccccCcccccch
Confidence 999988877665543
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.86 E-value=1.7e-21 Score=175.65 Aligned_cols=112 Identities=25% Similarity=0.307 Sum_probs=92.3
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|+.+|..+++|++|+
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence 46778888888888777778888888888888888888777777788888888888888888 77777777888888888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 193 (253)
+++|.+++..|..|..+++|++|++++|.+++.
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 186 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 186 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence 888888877777788888888888888887743
No 41
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.86 E-value=1.5e-22 Score=171.17 Aligned_cols=166 Identities=17% Similarity=0.205 Sum_probs=144.8
Q ss_pred CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch-hHhcCCCCc
Q 025426 78 VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT-NICSNLPFL 156 (253)
Q Consensus 78 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L 156 (253)
...++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|. ..+..+++|
T Consensus 73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L 151 (353)
T 2z80_A 73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL 151 (353)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence 34578999999999999888888999999999999999999655555889999999999999998 7777 556889999
Q ss_pred cEEEeecC-cCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccC
Q 025426 157 EFLSLSLN-MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT 235 (253)
Q Consensus 157 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 235 (253)
++|++++| .++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~ 231 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence 99999999 47656678899999999999999999988899999999999999999999744444456789999999999
Q ss_pred CCCceecch
Q 025426 236 NNLQVMILN 244 (253)
Q Consensus 236 n~l~~~~p~ 244 (253)
|.+++..+.
T Consensus 232 n~l~~~~~~ 240 (353)
T 2z80_A 232 TDLDTFHFS 240 (353)
T ss_dssp CBCTTCCCC
T ss_pred Ccccccccc
Confidence 999886543
No 42
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.86 E-value=2.9e-21 Score=152.97 Aligned_cols=149 Identities=19% Similarity=0.274 Sum_probs=133.7
Q ss_pred CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426 67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137 (253)
Q Consensus 67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 137 (253)
..|.+..+.|. ..+..++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus 9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 44666666665 123578999999999998778789999999999999999998889999999999999999
Q ss_pred CCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 138 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 216 (253)
+|.++ .+|+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 99999 8998888999999999999999998888999999999999999999998777789999999999999999863
No 43
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=1.4e-21 Score=159.81 Aligned_cols=163 Identities=21% Similarity=0.236 Sum_probs=118.2
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL 129 (276)
T ss_dssp CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEE
T ss_pred ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEE
Confidence 456777788877777666666777777777777777777666666777777777777777776 4444334667777777
Q ss_pred EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCCccc---------------------------cCCCCCCeeeccc
Q 025426 160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVPREI---------------------------GNLTKLKVLYIGA 211 (253)
Q Consensus 160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---------------------------~~l~~L~~L~l~~ 211 (253)
++++|.+++. +|..+..+++|++|++++|++++..+..+ ....+|++|++++
T Consensus 130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 7777777643 46667777777777777777664333222 2223788999999
Q ss_pred CcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426 212 NRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 212 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
|.+++..+..+..+++|+.|++++|++....|
T Consensus 210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CceeecCHhHhcccccccEEEccCCcccccCC
Confidence 99987767778999999999999999997765
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.9e-21 Score=168.37 Aligned_cols=99 Identities=26% Similarity=0.250 Sum_probs=49.1
Q ss_pred cCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCE
Q 025426 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQ 230 (253)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 230 (253)
..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 33444444555555444444444444555555555555554444444455555555555555555444455555555555
Q ss_pred EeccCCCCceecchhhhhc
Q 025426 231 FSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 231 L~l~~n~l~~~~p~~~~~l 249 (253)
|++++|++++.++..++.+
T Consensus 376 L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp EECCSSCCSCCCTTTTTTC
T ss_pred EECCCCccccCCHhHhccC
Confidence 5555555555444444433
No 45
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=1.3e-21 Score=166.07 Aligned_cols=157 Identities=25% Similarity=0.242 Sum_probs=102.9
Q ss_pred eEEEEEeCCCCccccCCccCC-CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 82 RVTVLNISSLNLRGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+++..|..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence 456677777777765555565 6777777777777776555566677777777777777776 55555556677777777
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccc---cCCCCCCeeecccCcCcccCChhhcCCCC--CCEEeccC
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI---GNLTKLKVLYIGANRLQGEIPREFGNLTE--LEQFSLPT 235 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~ 235 (253)
+++|.+++..+..|..+++|++|++++|.+++..+..+ ..+++|+.|+|++|.+++..+..+..++. ++.|++++
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~ 198 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence 77777765556667777777777777777764333333 45667777777777776544455666655 36677777
Q ss_pred CCCc
Q 025426 236 NNLQ 239 (253)
Q Consensus 236 n~l~ 239 (253)
|++.
T Consensus 199 N~~~ 202 (361)
T 2xot_A 199 NPLE 202 (361)
T ss_dssp SCEE
T ss_pred CCcc
Confidence 7664
No 46
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=1.9e-20 Score=146.76 Aligned_cols=157 Identities=24% Similarity=0.284 Sum_probs=138.0
Q ss_pred EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
-+.++.++++++ .+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|.++ .++...|..+++|++|+++
T Consensus 9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence 357888888887 556544 368999999999999766667889999999999999998 7888777899999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (253)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus 85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 164 (208)
T 2o6s_A 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 164 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence 99999666677899999999999999999777777899999999999999999777777999999999999999998876
Q ss_pred c
Q 025426 243 L 243 (253)
Q Consensus 243 p 243 (253)
|
T Consensus 165 ~ 165 (208)
T 2o6s_A 165 P 165 (208)
T ss_dssp T
T ss_pred C
Confidence 6
No 47
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.86 E-value=1.4e-20 Score=161.14 Aligned_cols=113 Identities=25% Similarity=0.296 Sum_probs=95.6
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+|..+++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 357888999999888777778888899999999999988777777888999999999999988 8888777888899999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 193 (253)
++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 9999998877777788888888888888887643
No 48
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=4.9e-21 Score=172.74 Aligned_cols=167 Identities=23% Similarity=0.251 Sum_probs=74.1
Q ss_pred eEEEEEeCCCCccccC--CccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 82 RVTVLNISSLNLRGTI--PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+++.|++++|.+.+.. +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence 3444444444444322 33344444455555554444444444444444455555555444433333323444444445
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCccc---CCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA---VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 236 (253)
++++|.+++..|..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 5544444444444444444444444444444331 1123344444444444444444444444444444444444444
Q ss_pred CCceecchhhhh
Q 025426 237 NLQVMILNFLQF 248 (253)
Q Consensus 237 ~l~~~~p~~~~~ 248 (253)
++++.+|..+..
T Consensus 511 ~l~~~~~~~l~~ 522 (606)
T 3t6q_A 511 RLTSSSIEALSH 522 (606)
T ss_dssp CCCGGGGGGGTT
T ss_pred ccCcCChhHhCc
Confidence 444444444443
No 49
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=3.6e-21 Score=173.63 Aligned_cols=168 Identities=20% Similarity=0.148 Sum_probs=142.2
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+.+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcccCCEE
Confidence 457899999999999888888999999999999999999777888999999999999999998 5533334889999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC----EEecc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE----QFSLP 234 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~ 234 (253)
++++|.+++..+..+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|+ .|+++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 999999987776789999999999999999986 5688999999999999999999887777776665544 78888
Q ss_pred CCCCceecchhhhh
Q 025426 235 TNNLQVMILNFLQF 248 (253)
Q Consensus 235 ~n~l~~~~p~~~~~ 248 (253)
+|.+++.++..+..
T Consensus 190 ~n~l~~~~~~~~~~ 203 (606)
T 3vq2_A 190 LNPIDFIQDQAFQG 203 (606)
T ss_dssp TCCCCEECTTTTTT
T ss_pred CCCcceeCcccccC
Confidence 88888777766553
No 50
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=2.1e-21 Score=155.42 Aligned_cols=149 Identities=21% Similarity=0.280 Sum_probs=104.3
Q ss_pred CeEEEEEeCC-CCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCC---EEEccCC-CCcCcCchhHhcCCCC
Q 025426 81 HRVTVLNISS-LNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLK---NVSLGKN-KLSGQIPTNICSNLPF 155 (253)
Q Consensus 81 ~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~ 155 (253)
++++.|++++ |.+++..+..|..+++|+.|++++|.+++ +|. +..+++|+ +|++++| .++ .+++..|..+++
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~ 156 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCN 156 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBS
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhc
Confidence 3445555554 55544444444555555555555555542 333 44555555 6666666 666 666666688999
Q ss_pred cc-EEEeecCcCCCCCC-ccCCCCCCcceEeeecCc-CcccCCccccCC-CCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426 156 LE-FLSLSLNMFHGGIP-STLSNCTYLRTLSLAYND-FSGAVPREIGNL-TKLKVLYIGANRLQGEIPREFGNLTELEQF 231 (253)
Q Consensus 156 L~-~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (253)
|+ +|++++|.++ .+| ..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|
T Consensus 157 L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 157 ETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred ceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 99 9999999998 455 44555 899999999995 987767788999 999999999999984 4443 67889999
Q ss_pred eccCCC
Q 025426 232 SLPTNN 237 (253)
Q Consensus 232 ~l~~n~ 237 (253)
+++++.
T Consensus 232 ~l~~~~ 237 (239)
T 2xwt_C 232 IARNTW 237 (239)
T ss_dssp ECTTC-
T ss_pred eccCcc
Confidence 998763
No 51
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.85 E-value=1.1e-20 Score=160.40 Aligned_cols=163 Identities=25% Similarity=0.271 Sum_probs=141.0
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
+.+++++++++ .+|..+. ..++.|++++|.+++..+..+. .+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 36788888888 5676554 4689999999999977777777 8999999999999998 7776666899999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhh---cCCCCCCEEeccCCCCc
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREF---GNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~ 239 (253)
+|.++...+..|..+++|++|++++|.+++..+..+.++++|+.|+|++|.+++..+..| ..+++|+.|++++|+++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997777789999999999999999998888999999999999999999996555555 67999999999999999
Q ss_pred eecchhhhhcc
Q 025426 240 VMILNFLQFYS 250 (253)
Q Consensus 240 ~~~p~~~~~l~ 250 (253)
+.++..+..++
T Consensus 177 ~l~~~~~~~l~ 187 (361)
T 2xot_A 177 KLPLTDLQKLP 187 (361)
T ss_dssp CCCHHHHHHSC
T ss_pred ccCHHHhhhcc
Confidence 98888887765
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=1e-20 Score=170.79 Aligned_cols=161 Identities=26% Similarity=0.337 Sum_probs=142.1
Q ss_pred EeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcC
Q 025426 87 NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF 166 (253)
Q Consensus 87 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~ 166 (253)
+-++.+++ .+|..+. .++++|++++|.+++..+..|..+++|++|++++|.++ .+++..|.++++|++|++++|++
T Consensus 37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC
Confidence 44455566 6776654 47999999999999777788999999999999999998 88888779999999999999999
Q ss_pred CCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEeccCCCCceecchh
Q 025426 167 HGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQVMILNF 245 (253)
Q Consensus 167 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 245 (253)
++..+..|.++++|++|++++|++++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|++++.+|..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 96666789999999999999999997777789999999999999999976 46888999999999999999999999999
Q ss_pred hhhccc
Q 025426 246 LQFYSS 251 (253)
Q Consensus 246 ~~~l~~ 251 (253)
++.+.+
T Consensus 193 l~~L~~ 198 (635)
T 4g8a_A 193 LRVLHQ 198 (635)
T ss_dssp GHHHHT
T ss_pred ccchhh
Confidence 887653
No 53
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.3e-20 Score=169.89 Aligned_cols=133 Identities=20% Similarity=0.274 Sum_probs=77.3
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+++..|..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEe
Confidence 4455666666655444444455666666666666666555555666666666666666665 444444455666666666
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 666665433344556666666666666666555555555666666666555554
No 54
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=8.8e-21 Score=169.68 Aligned_cols=168 Identities=18% Similarity=0.173 Sum_probs=151.0
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
+..++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence 357899999999999888889999999999999999999777888999999999999999998 6666556899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCC----CEEecc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL----EQFSLP 234 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~ 234 (253)
++++|.+++..+..+..+++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++| ..++++
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 999999986655679999999999999999986 468999999999999999999998878888888888 899999
Q ss_pred CCCCceecchhhhh
Q 025426 235 TNNLQVMILNFLQF 248 (253)
Q Consensus 235 ~n~l~~~~p~~~~~ 248 (253)
+|.+++.+|..+..
T Consensus 186 ~n~l~~~~~~~~~~ 199 (570)
T 2z63_A 186 LNPMNFIQPGAFKE 199 (570)
T ss_dssp TCCCCEECTTTTTT
T ss_pred CCCceecCHHHhcc
Confidence 99999998887764
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=3.4e-20 Score=155.46 Aligned_cols=166 Identities=22% Similarity=0.254 Sum_probs=122.9
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCC---
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF--- 155 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~--- 155 (253)
..++++.|++++|.+++..+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+. .++...+..+++
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~ 151 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNC 151 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCE
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCE
Confidence 4567888888888888777777888888888888887776 3443322 44555555555444 333333333444
Q ss_pred -------------------------------------------ccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 156 -------------------------------------------LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 156 -------------------------------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
|++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus 152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 4444444555544445667888999999999999998
Q ss_pred cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426 193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 193 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|...
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 287 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV 287 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence 87888999999999999999998 788889999999999999999999988877654
No 56
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=163.49 Aligned_cols=170 Identities=20% Similarity=0.197 Sum_probs=87.7
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcC-----------------
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG----------------- 143 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~----------------- 143 (253)
++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 159 (477)
T 2id5_A 80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL 159 (477)
T ss_dssp TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence 456666666666654434445555555555555555554444444444555555554444441
Q ss_pred ------cCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecC------------------------cCccc
Q 025426 144 ------QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN------------------------DFSGA 193 (253)
Q Consensus 144 ------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n------------------------~l~~~ 193 (253)
.++...+..+++|+.|++++|.+++..+..|..+++|++|++++| .+++.
T Consensus 160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV 239 (477)
T ss_dssp ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence 334333344555555555555554333334444444444444433 33321
Q ss_pred CCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 194 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
.+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..|.+++
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 296 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN 296 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence 113344555666666666666555555566666666666666666666666655544
No 57
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=148.25 Aligned_cols=136 Identities=18% Similarity=0.208 Sum_probs=123.9
Q ss_pred CeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL 110 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEE
Confidence 457899999999997755 45789999999999999999777778999999999999999998 7777766899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCccc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE 217 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 217 (253)
++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|++...
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999988889999999999999999999988899999999999999999998753
No 58
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=3.2e-20 Score=167.43 Aligned_cols=163 Identities=25% Similarity=0.310 Sum_probs=147.0
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
+.++.++++++ .+|..+. ++++.|++++|.+++..+..+.++++|++|++++|.++ .+++..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCC
Confidence 36888898888 6776554 78999999999999877889999999999999999998 66555558999999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEeccCCCCceec
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQVMI 242 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (253)
|.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++.+
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence 99998889999999999999999999997777889999999999999999986 57999999999999999999999999
Q ss_pred chhhhhcc
Q 025426 243 LNFLQFYS 250 (253)
Q Consensus 243 p~~~~~l~ 250 (253)
|..++.++
T Consensus 170 ~~~~~~l~ 177 (606)
T 3vq2_A 170 VNDLQFLR 177 (606)
T ss_dssp TTTTHHHH
T ss_pred hhhhhhhh
Confidence 98887765
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=1.4e-20 Score=157.62 Aligned_cols=142 Identities=20% Similarity=0.279 Sum_probs=98.6
Q ss_pred CCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCC
Q 025426 101 LGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~ 178 (253)
+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+ .++|++|++++|.+++..+..+..++
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~ 216 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLN 216 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCC
Confidence 4455555555555555532 34455556666666666666665 555543 25677777777777666667777788
Q ss_pred CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
+|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus 217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 8888888888887666667777888888888888877 6677788888888888888888877776654
No 60
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=164.97 Aligned_cols=162 Identities=24% Similarity=0.302 Sum_probs=138.0
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 156 (253)
..++++.|++++|.+.+..|..+..+++|+.|++++|.+.+ .+|..+..+++|++|++++|.+.+.+|...+..+++|
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence 45778999999999998888889999999999999999985 4567788899999999999999865888766888999
Q ss_pred cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236 (253)
Q Consensus 157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 236 (253)
++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 9999999999877776554 78999999999998 78888889999999999999998433334889999999999999
Q ss_pred CCceecc
Q 025426 237 NLQVMIL 243 (253)
Q Consensus 237 ~l~~~~p 243 (253)
+++...+
T Consensus 479 ~~~c~c~ 485 (520)
T 2z7x_B 479 PWDCSCP 485 (520)
T ss_dssp CBCCCHH
T ss_pred CCcccCC
Confidence 9987544
No 61
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.84 E-value=1.9e-21 Score=176.57 Aligned_cols=164 Identities=22% Similarity=0.385 Sum_probs=127.3
Q ss_pred CCCeEEEEEeCCCCcccc-----------------CCccCC--CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC
Q 025426 79 HSHRVTVLNISSLNLRGT-----------------IPSQLG--NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 139 (253)
..++++.|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus 204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283 (636)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence 456788888888888875 888888 8888888888888888888888888888888888888
Q ss_pred C-CcC-cCchhHhcCC------CCccEEEeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeec
Q 025426 140 K-LSG-QIPTNICSNL------PFLEFLSLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI 209 (253)
Q Consensus 140 ~-l~~-~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 209 (253)
. ++| .+|..+ ..+ ++|++|++++|.++ .+|. .+..+++|++|++++|.++|.+| .+..+++|++|++
T Consensus 284 ~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L 360 (636)
T 4eco_A 284 RGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL 360 (636)
T ss_dssp TTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred CCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence 7 876 677766 444 78888888888887 6777 78888888888888888887777 6777777777777
Q ss_pred ccCcCcccCChhhcCCCC-CCEEeccCCCCceecchhhh
Q 025426 210 GANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 210 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~ 247 (253)
++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.
T Consensus 361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~ 397 (636)
T 4eco_A 361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD 397 (636)
T ss_dssp CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence 777776 66666777776 777777777776 4454443
No 62
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=1.2e-20 Score=157.09 Aligned_cols=155 Identities=23% Similarity=0.288 Sum_probs=86.8
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--CChhh--hccCCCCEEEccCCCCcC--cCchhHhcCCC
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSTI--FTIYTLKNVSLGKNKLSG--QIPTNICSNLP 154 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~ 154 (253)
+++++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++ .++..++..++
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~ 228 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV 228 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence 4555666666666555555566666666666666655433 22223 455666666666666651 22333444556
Q ss_pred CccEEEeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEec
Q 025426 155 FLEFLSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233 (253)
Q Consensus 155 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 233 (253)
+|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++
T Consensus 229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L 303 (312)
T 1wwl_A 229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL 303 (312)
T ss_dssp CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence 66666666666655443 33444566666666666665 4555444 5666666666666543 43 566666666666
Q ss_pred cCCCCce
Q 025426 234 PTNNLQV 240 (253)
Q Consensus 234 ~~n~l~~ 240 (253)
++|++++
T Consensus 304 ~~N~l~~ 310 (312)
T 1wwl_A 304 KGNPFLD 310 (312)
T ss_dssp TTCTTTC
T ss_pred cCCCCCC
Confidence 6666654
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=6.1e-21 Score=158.82 Aligned_cols=158 Identities=21% Similarity=0.207 Sum_probs=106.4
Q ss_pred CCeEEEEEeCCCCccccCCccC--CCCCCCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhHhcC
Q 025426 80 SHRVTVLNISSLNLRGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNICSN 152 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~ 152 (253)
..++++|++++|.+++..|..+ ..+++|++|++++|.+.+. |..+..+ ++|++|++++|.+. .+++..+..
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence 4567888888888887777765 7788888888888888755 7667666 78888888888887 455444477
Q ss_pred CCCccEEEeecCcCCCC--CCccC--CCCCCcceEeeecCcCccc--CC-ccccCCCCCCeeecccCcCcccCC-hhhcC
Q 025426 153 LPFLEFLSLSLNMFHGG--IPSTL--SNCTYLRTLSLAYNDFSGA--VP-REIGNLTKLKVLYIGANRLQGEIP-REFGN 224 (253)
Q Consensus 153 l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~ 224 (253)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. .+ ..+..+++|++|++++|.+++..| ..+..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 77888888888876543 22233 6667777777777777621 11 223455667777777777665543 34455
Q ss_pred CCCCCEEeccCCCCc
Q 025426 225 LTELEQFSLPTNNLQ 239 (253)
Q Consensus 225 l~~L~~L~l~~n~l~ 239 (253)
+++|+.|++++|.++
T Consensus 252 l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK 266 (312)
T ss_dssp CTTCCEEECTTSCCS
T ss_pred cCCCCEEECCCCccC
Confidence 666666666666666
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=175.36 Aligned_cols=174 Identities=24% Similarity=0.214 Sum_probs=125.2
Q ss_pred CccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcC-ChhhhccCCCCEEEccCCCCcCcCch
Q 025426 69 CNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSTIFTIYTLKNVSLGKNKLSGQIPT 147 (253)
Q Consensus 69 c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~ 147 (253)
+++..+.. .+++++.|++++|.+++..+..|..+++|+.|++++|...+.+ |..+.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 34444443 3567888888888888777888888888888888888554444 66788888888888888888733344
Q ss_pred hHhcCCCCccEEEeecCcCCCCCCcc--CCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCChhhcC
Q 025426 148 NICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPREFGN 224 (253)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (253)
. |..+++|++|++++|.+++..|.. +..+++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..
T Consensus 92 ~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 92 A-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp S-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred H-ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 4 477888888888888887655544 7788888888888888876544 56778888888888888887766666665
Q ss_pred C--CCCCEEeccCCCCceecchh
Q 025426 225 L--TELEQFSLPTNNLQVMILNF 245 (253)
Q Consensus 225 l--~~L~~L~l~~n~l~~~~p~~ 245 (253)
+ ++|+.|++++|.+.+..|..
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCC
T ss_pred ccCCccceEECCCCccccccccc
Confidence 5 56666666666665555443
No 65
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=8.2e-21 Score=169.86 Aligned_cols=142 Identities=21% Similarity=0.276 Sum_probs=70.8
Q ss_pred CCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCC-CCCCccCCCCC
Q 025426 101 LGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH-GGIPSTLSNCT 178 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~ 178 (253)
+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.++ +.+|..+..++
T Consensus 392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-hhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 4444444444444444443322 23444555555555555554222222 244555555555555554 23445555555
Q ss_pred CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
+|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus 471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 55555555555554445555555555555555555554444455555555555555555555444
No 66
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=5.2e-20 Score=164.82 Aligned_cols=161 Identities=23% Similarity=0.341 Sum_probs=139.2
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 156 (253)
..++++.|++++|.+++..|..+..+++|+.|++++|.+++ ..|..+..+++|++|++++|.+.+.+|...+..+++|
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 45789999999999998888899999999999999999985 3346688899999999999999966888877889999
Q ss_pred cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEeccC
Q 025426 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPT 235 (253)
Q Consensus 157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~ 235 (253)
++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD 506 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCS
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecC
Confidence 9999999999877666554 68999999999998 67877779999999999999999 45554 89999999999999
Q ss_pred CCCceecc
Q 025426 236 NNLQVMIL 243 (253)
Q Consensus 236 n~l~~~~p 243 (253)
|++.+..+
T Consensus 507 N~~~c~c~ 514 (562)
T 3a79_B 507 NPWDCTCP 514 (562)
T ss_dssp CCBCCCHH
T ss_pred CCcCCCcc
Confidence 99987554
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.5e-19 Score=165.21 Aligned_cols=167 Identities=22% Similarity=0.277 Sum_probs=118.0
Q ss_pred CCeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCC------------------------C--CcCChhhhccCCCC
Q 025426 80 SHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRL------------------------S--GSIPSTIFTIYTLK 132 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l------------------------~--~~~~~~l~~l~~L~ 132 (253)
.++++.|++++|.+.+.++ ..+..+++|+.|++++|.+ . +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 3456666666666654443 3455555555555555543 3 34566677777888
Q ss_pred EEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC--------ccCCCCCCcceEeeecCcCcccCCccccCCCCC
Q 025426 133 NVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP--------STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204 (253)
Q Consensus 133 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 204 (253)
+|++++|.++ .+++..+..+++|++|++++|.+++..+ ..+.++++|++|++++|+++...+..+.++++|
T Consensus 484 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L 562 (680)
T 1ziw_A 484 ILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL 562 (680)
T ss_dssp EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred EEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence 8888888887 6666656778888888888888764321 236777888888888888884444567888888
Q ss_pred CeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 205 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
++|++++|.+++..+..|..+++|+.|++++|++++.+|..+.
T Consensus 563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 8888888888866667778888888888888888888887665
No 68
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.82 E-value=1.8e-19 Score=154.27 Aligned_cols=161 Identities=24% Similarity=0.248 Sum_probs=102.6
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
..++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .+++..+..+++|++
T Consensus 91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 169 (390)
T 3o6n_A 91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN 169 (390)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCE
T ss_pred CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCE
Confidence 3456778888888877666666777778888888888777333334567777888888777777 454444467777777
Q ss_pred EEeecCcCCCCCCc-----------------------------------------------------------cCCCCCC
Q 025426 159 LSLSLNMFHGGIPS-----------------------------------------------------------TLSNCTY 179 (253)
Q Consensus 159 L~l~~n~~~~~~~~-----------------------------------------------------------~~~~l~~ 179 (253)
|++++|.+++.... .+..+++
T Consensus 170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~ 249 (390)
T 3o6n_A 170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG 249 (390)
T ss_dssp EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCC
Confidence 77777776532111 1333455
Q ss_pred cceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
|++|++++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++++.
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~ 310 (390)
T 3o6n_A 250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV 310 (390)
T ss_dssp CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC
T ss_pred ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec
Confidence 6666666666665556666666666666666666653 344445566666666666666533
No 69
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2e-19 Score=149.46 Aligned_cols=156 Identities=25% Similarity=0.346 Sum_probs=111.9
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+.+. +. +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.++ .++. +..+++|++|
T Consensus 62 l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L 134 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVL 134 (308)
T ss_dssp CTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEE
Confidence 46788888888888743 33 7778888888888888764 3 35777888888888888887 5554 4677888888
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~ 208 (308)
T 1h6u_A 135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS 208 (308)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence 888888764333 67777888888888877743 33 6777788888888887774433 677777888888888777
Q ss_pred eecchhhhhcc
Q 025426 240 VMILNFLQFYS 250 (253)
Q Consensus 240 ~~~p~~~~~l~ 250 (253)
+.+| +..++
T Consensus 209 ~~~~--l~~l~ 217 (308)
T 1h6u_A 209 DVSP--LANTS 217 (308)
T ss_dssp BCGG--GTTCT
T ss_pred cccc--ccCCC
Confidence 6664 44443
No 70
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.82 E-value=4.4e-20 Score=143.57 Aligned_cols=151 Identities=15% Similarity=0.263 Sum_probs=129.1
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.+. .++ .+..+++|+.|++++|.+. .+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEE
Confidence 56899999999998 556 5888999999999999765 34578899999999999999986566665 7899999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCc-CcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYND-FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
+++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 99999997778889999999999999998 66 455 68899999999999999985 34 7899999999999999986
Q ss_pred e
Q 025426 240 V 240 (253)
Q Consensus 240 ~ 240 (253)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 5
No 71
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.8e-20 Score=174.54 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=142.6
Q ss_pred CCCeEEEEEeCCCCccc-----------------cCCccCC--CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC
Q 025426 79 HSHRVTVLNISSLNLRG-----------------TIPSQLG--NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 139 (253)
..++++.|++++|.+++ .+|..+. .+++|+.|++++|.+.+.+|..+..+++|++|++++|
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence 45689999999999997 3888887 9999999999999999899999999999999999999
Q ss_pred C-CcC-cCchhHh------cCCCCccEEEeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeec
Q 025426 140 K-LSG-QIPTNIC------SNLPFLEFLSLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI 209 (253)
Q Consensus 140 ~-l~~-~~~~~~~------~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l 209 (253)
. +++ .+|..+. ..+++|++|++++|.++ .+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L 602 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL 602 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence 8 887 6887651 23458999999999998 7887 8999999999999999998 777 8888999999999
Q ss_pred ccCcCcccCChhhcCCCC-CCEEeccCCCCceecchhhhhc
Q 025426 210 GANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 210 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l 249 (253)
++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+
T Consensus 603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~ 641 (876)
T 4ecn_A 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK 641 (876)
T ss_dssp CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence 999988 78888888888 999999999988 566665543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.6e-20 Score=164.10 Aligned_cols=155 Identities=21% Similarity=0.201 Sum_probs=68.7
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh-------------
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN------------- 148 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~------------- 148 (253)
+++.|++++|.+.+..|..|..+++|+.|++++|.+.+..| +..+++|++|++++|.++ .++..
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcC
Confidence 44555555555554444444555555555555555443222 344444444444444332 11100
Q ss_pred ---HhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCcccc-CCCCCCeeecccCcCcccCChhhcC
Q 025426 149 ---ICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-NLTKLKVLYIGANRLQGEIPREFGN 224 (253)
Q Consensus 149 ---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~ 224 (253)
....+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+ +..
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~ 189 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV 189 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC
T ss_pred CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--ccc
Confidence 001234455555555555544444555555555555555555544444443 34444444444444443211 112
Q ss_pred CCCCCEEeccCCCCcee
Q 025426 225 LTELEQFSLPTNNLQVM 241 (253)
Q Consensus 225 l~~L~~L~l~~n~l~~~ 241 (253)
+++|+.|++++|.+++.
T Consensus 190 l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 190 FAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CTTCCEEECCSSCCCEE
T ss_pred CCCCCEEECCCCCCCCC
Confidence 34444444444444433
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=160.37 Aligned_cols=146 Identities=21% Similarity=0.283 Sum_probs=126.4
Q ss_pred CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcC--cCchhHhcCCCCccEEEeecCcCCCCCCc-cCCCCC
Q 025426 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCT 178 (253)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~ 178 (253)
..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+ ..+++|++|++++|.+++.+|. .+..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcccccchhccCc
Confidence 678899999999999998889999999999999999999983 334444 8899999999999999875664 488899
Q ss_pred CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..+++
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 999999999999877777664 78999999999998 78888889999999999999999766655766653
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=6.3e-20 Score=153.00 Aligned_cols=162 Identities=16% Similarity=0.149 Sum_probs=129.1
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
.++.|++++|.+++..+ ..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..++..+++|++|++
T Consensus 100 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 100 SIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp TCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred CcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence 34445555555543332 235789999999999987777788889999999999999985445555457899999999
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc-e
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ-V 240 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~ 240 (253)
++|.+++. + ....+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +
T Consensus 177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~ 252 (317)
T 3o53_A 177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG 252 (317)
T ss_dssp TTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred CCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence 99999854 3 23458899999999999994 5556888999999999999998 57888999999999999999998 7
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.+|.++..++
T Consensus 253 ~~~~~~~~~~ 262 (317)
T 3o53_A 253 TLRDFFSKNQ 262 (317)
T ss_dssp HHHHHHHTCH
T ss_pred CHHHHHhccc
Confidence 8888777654
No 75
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=4.2e-19 Score=141.32 Aligned_cols=137 Identities=21% Similarity=0.300 Sum_probs=124.3
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence 367999999999999888999999999999999999998665667889999999999999999 7888777899999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 218 (253)
++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++....
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 99999998 78888999999999999999999776677899999999999999998543
No 76
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=167.68 Aligned_cols=89 Identities=19% Similarity=0.188 Sum_probs=54.5
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChh--hhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPST--IFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE 157 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 157 (253)
.++++.|++++|.+.+..|..|.++++|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+...+..+++|+
T Consensus 72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 345666677766666666666666666666666666666544443 566666666666666665333333345666666
Q ss_pred EEEeecCcCCC
Q 025426 158 FLSLSLNMFHG 168 (253)
Q Consensus 158 ~L~l~~n~~~~ 168 (253)
+|++++|.+++
T Consensus 152 ~L~Ls~N~i~~ 162 (844)
T 3j0a_A 152 SIDFSSNQIFL 162 (844)
T ss_dssp EEEEESSCCCC
T ss_pred EEECCCCcCCe
Confidence 66666665544
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=5.2e-19 Score=158.34 Aligned_cols=146 Identities=26% Similarity=0.322 Sum_probs=125.2
Q ss_pred CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch--hHhcCCCCccEEEeecCcCCCCCC-ccCCCCC
Q 025426 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT--NICSNLPFLEFLSLSLNMFHGGIP-STLSNCT 178 (253)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~ 178 (253)
..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .++. ..+..+++|++|++++|.+++.+| ..+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 67889999999999999888999999999999999999998 5543 334789999999999999987456 4588899
Q ss_pred CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..+++
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence 999999999999877766554 78999999999998 67777779999999999999999766654766653
No 78
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=4.8e-20 Score=153.23 Aligned_cols=156 Identities=18% Similarity=0.182 Sum_probs=96.4
Q ss_pred eEEEEEeCCCCccccCCccC--CCCCCCCEEECCCCCCCCcCC----hhhhccCCCCEEEccCCCCcCcCchhHhcCCCC
Q 025426 82 RVTVLNISSLNLRGTIPSQL--GNLSSLQSLNLSCNRLSGSIP----STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF 155 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 155 (253)
++++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+. .++...+..+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence 48888888888887777777 777888888888888775444 33445778888888888886 555444467777
Q ss_pred ccEEEeecCcCCCC--C--CccCCCCCCcceEeeecCcCcccCCc----cccCCCCCCeeecccCcCcccCChhhcCC--
Q 025426 156 LEFLSLSLNMFHGG--I--PSTLSNCTYLRTLSLAYNDFSGAVPR----EIGNLTKLKVLYIGANRLQGEIPREFGNL-- 225 (253)
Q Consensus 156 L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-- 225 (253)
|++|++++|.+.+. + +..+..+++|++|++++|+++ .++. .+..+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 88888888776431 1 122245555666666666554 1221 12344555555555555554444444443
Q ss_pred -CCCCEEeccCCCCc
Q 025426 226 -TELEQFSLPTNNLQ 239 (253)
Q Consensus 226 -~~L~~L~l~~n~l~ 239 (253)
++|+.|++++|.++
T Consensus 250 ~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 250 SSALNSLNLSFAGLE 264 (310)
T ss_dssp CTTCCCEECCSSCCC
T ss_pred cCcCCEEECCCCCCC
Confidence 35555555555555
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=149.84 Aligned_cols=155 Identities=23% Similarity=0.336 Sum_probs=102.0
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--C--ChhhhccCCCCEEEccCCCCcCcCchh---HhcC
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--I--PSTIFTIYTLKNVSLGKNKLSGQIPTN---ICSN 152 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~ 152 (253)
.++++.|++++|.+.+..+..+..+++|++|++++|.+.+. + +..+..+++|++|++++|.++ .++.. ++..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 35677777777777666666677777777777777776532 1 122346677777777777775 44332 3456
Q ss_pred CCCccEEEeecCcCCCCCCccCCCC---CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC
Q 025426 153 LPFLEFLSLSLNMFHGGIPSTLSNC---TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229 (253)
Q Consensus 153 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 229 (253)
+++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~ 297 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD 297 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence 6777777777777776656555554 57777777777777 5565553 6777777777777743 32 56667777
Q ss_pred EEeccCCCCce
Q 025426 230 QFSLPTNNLQV 240 (253)
Q Consensus 230 ~L~l~~n~l~~ 240 (253)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 77777777764
No 80
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.80 E-value=5.2e-19 Score=137.01 Aligned_cols=131 Identities=21% Similarity=0.244 Sum_probs=109.8
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
+.+++++++++ .+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence 57788888886 6776554 3899999999999865554 4888999999999999998 4444444889999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 218 (253)
+|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 99998777788899999999999999999888888999999999999999988643
No 81
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.1e-19 Score=160.12 Aligned_cols=168 Identities=27% Similarity=0.327 Sum_probs=144.1
Q ss_pred CCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch
Q 025426 68 VCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT 147 (253)
Q Consensus 68 ~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~ 147 (253)
.|.|.++ | +.++++++ .+|..+. ++|+.|++++|.+++..|..+..+++|++|++++|.+. .+++
T Consensus 3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~ 67 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEG 67 (549)
T ss_dssp EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECT
T ss_pred cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccCh
Confidence 4777776 5 44567777 6676554 79999999999999888889999999999999999999 5555
Q ss_pred hHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccC-ChhhcCC
Q 025426 148 NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEI-PREFGNL 225 (253)
Q Consensus 148 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l 225 (253)
..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+..+
T Consensus 68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l 147 (549)
T 2z81_A 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL 147 (549)
T ss_dssp TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence 555899999999999999997777779999999999999999986 35678999999999999999954444 4689999
Q ss_pred CCCCEEeccCCCCceecchhhhhcc
Q 025426 226 TELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
++|+.|++++|.+++.+|..+..++
T Consensus 148 ~~L~~L~L~~n~l~~~~~~~l~~l~ 172 (549)
T 2z81_A 148 TSLNELEIKALSLRNYQSQSLKSIR 172 (549)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCS
T ss_pred cccCeeeccCCcccccChhhhhccc
Confidence 9999999999999999999887764
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=1.2e-18 Score=143.69 Aligned_cols=153 Identities=33% Similarity=0.397 Sum_probs=114.6
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+++..+ +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+. .++ . +..+++|++|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~-l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-G-LVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-G-GGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-h-hcCCCCCCEE
Confidence 4678888888888874433 7788888888888888864 3 34777888888888888887 453 2 3677888888
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence 8888888744 567778888888888888875444 7778888888888888874 33 4788888888888888877
Q ss_pred eecchh
Q 025426 240 VMILNF 245 (253)
Q Consensus 240 ~~~p~~ 245 (253)
..+...
T Consensus 214 ~~~~~~ 219 (291)
T 1h6t_A 214 NKPINH 219 (291)
T ss_dssp CCCEEC
T ss_pred CCcccc
Confidence 655443
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.79 E-value=1.6e-19 Score=159.01 Aligned_cols=161 Identities=16% Similarity=0.150 Sum_probs=126.2
Q ss_pred EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
++.|++++|.+.+..+ ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..++..+++|++|+++
T Consensus 101 L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 101 IETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp CCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred cCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence 3444444444443222 2357889999999999887788888899999999999999866666664578999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc-ee
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ-VM 241 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~ 241 (253)
+|.+++. + .+..+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.
T Consensus 178 ~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~ 253 (487)
T 3oja_A 178 YNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT 253 (487)
T ss_dssp TSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred CCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcc
Confidence 9999855 2 23468899999999999995 4555888899999999999998 46778889999999999999998 77
Q ss_pred cchhhhhcc
Q 025426 242 ILNFLQFYS 250 (253)
Q Consensus 242 ~p~~~~~l~ 250 (253)
+|.++..++
T Consensus 254 ~~~~~~~l~ 262 (487)
T 3oja_A 254 LRDFFSKNQ 262 (487)
T ss_dssp HHHHHTTCH
T ss_pred hHHHHHhCC
Confidence 777776553
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=1.4e-18 Score=144.27 Aligned_cols=155 Identities=21% Similarity=0.341 Sum_probs=132.6
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|+++++.+.. ++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .++. +..+++|++|+
T Consensus 41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEE
T ss_pred CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEEE
Confidence 578999999999984 44 58889999999999999985 444 899999999999999998 6653 47899999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++ ++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence 99999985 34 38899999999999999985433 8889999999999999985433 8999999999999999998
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.++ +..++
T Consensus 188 ~~~--l~~l~ 195 (308)
T 1h6u_A 188 ISP--LASLP 195 (308)
T ss_dssp CGG--GGGCT
T ss_pred Chh--hcCCC
Confidence 776 55544
No 85
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.4e-18 Score=146.30 Aligned_cols=157 Identities=23% Similarity=0.371 Sum_probs=116.5
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.+.+. +. +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++ .++. +..+++|++|+
T Consensus 177 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~ 249 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLE 249 (347)
T ss_dssp TTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred CCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEE
Confidence 4566666666665532 22 5556666666666666653322 677788888888888887 5555 47788888888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus 250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 325 (347)
T 4fmz_A 250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD 325 (347)
T ss_dssp CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence 888888743 4577888899999999888753 457788889999999999888888888899999999999999988
Q ss_pred ecchhhhhcc
Q 025426 241 MILNFLQFYS 250 (253)
Q Consensus 241 ~~p~~~~~l~ 250 (253)
.+| +..++
T Consensus 326 ~~~--~~~l~ 333 (347)
T 4fmz_A 326 IRP--LASLS 333 (347)
T ss_dssp CGG--GGGCT
T ss_pred ccC--hhhhh
Confidence 877 54444
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=6.3e-19 Score=145.28 Aligned_cols=156 Identities=21% Similarity=0.300 Sum_probs=133.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
.+++.|++++|.+.. ++ .+..+++|+.|++++|.+++.. . +..+++|++|++++|.+. .++. +..+++|++|+
T Consensus 46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~ 118 (291)
T 1h6t_A 46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLS 118 (291)
T ss_dssp HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEE
T ss_pred CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEE
Confidence 568999999999984 34 4788999999999999998544 3 889999999999999998 5655 48899999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|.+++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 999999853 5688899999999999999854 678899999999999999986554 9999999999999999997
Q ss_pred ecchhhhhccc
Q 025426 241 MILNFLQFYSS 251 (253)
Q Consensus 241 ~~p~~~~~l~~ 251 (253)
..+ +..+++
T Consensus 193 l~~--l~~l~~ 201 (291)
T 1h6t_A 193 LRA--LAGLKN 201 (291)
T ss_dssp CGG--GTTCTT
T ss_pred Chh--hccCCC
Confidence 633 665543
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=1.2e-19 Score=151.23 Aligned_cols=163 Identities=26% Similarity=0.272 Sum_probs=84.0
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh----------------hhhccCCCCEEEccCCCCcC
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS----------------TIFTIYTLKNVSLGKNKLSG 143 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~l~~l~~L~~L~l~~n~l~~ 143 (253)
.++++.|++++|.+++..+ +..+++|++|++++|.+++..+. ....+++|++|++++|.++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~- 133 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT- 133 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC-
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC-
Confidence 4567777777777764443 66677777777777766521100 0011233444444444444
Q ss_pred cCchhHhcCCCCccEEEeecCcCCCCCCccC-CCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhh
Q 025426 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREF 222 (253)
Q Consensus 144 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~ 222 (253)
.+++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ +|..+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~ 210 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEF 210 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhh
Confidence 2322222444555555555555554333333 2445555555555555532 2 12235566666666666663 33346
Q ss_pred cCCCCCCEEeccCCCCceecchhhhhc
Q 025426 223 GNLTELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 223 ~~l~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
..+++|+.|++++|.+++. |..+..+
T Consensus 211 ~~l~~L~~L~L~~N~l~~l-~~~~~~l 236 (317)
T 3o53_A 211 QSAAGVTWISLRNNKLVLI-EKALRFS 236 (317)
T ss_dssp GGGTTCSEEECTTSCCCEE-CTTCCCC
T ss_pred cccCcccEEECcCCcccch-hhHhhcC
Confidence 6666677777777766643 3344433
No 88
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=9.5e-20 Score=167.54 Aligned_cols=203 Identities=23% Similarity=0.284 Sum_probs=93.6
Q ss_pred ChhhHHHHHHHHHhcCCCCCccccCCCC-CCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCC-----E
Q 025426 36 TITDRDALLALKAHITHDPTNFLAKNWN-TSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQ-----S 109 (253)
Q Consensus 36 ~~~~~~~l~~~~~~~~~~~~~~l~~~w~-~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~-----~ 109 (253)
.+.++.++..+...........-.. |. .......|.+..+. .+.++.|++.++.+.. .+..+.....|. .
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~ 205 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE 205 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence 3456677777775543222221222 42 33345566665553 3567777777777663 232222111222 2
Q ss_pred EECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCc
Q 025426 110 LNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND 189 (253)
Q Consensus 110 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 189 (253)
+++..|.+. ..+..+..+.+|++|++++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence 222333333 34556666777777777777776 6776663 6677777777777776 666667777777777777777
Q ss_pred CcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426 190 FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 190 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 338 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence 77 56777777777777777777775 55666777777777777777777777766644
No 89
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.78 E-value=7e-19 Score=142.93 Aligned_cols=152 Identities=20% Similarity=0.278 Sum_probs=130.2
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.|++++|++. .++ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.++ .++... . ++|++|
T Consensus 40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L 111 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGIP--S-ACLSRL 111 (263)
T ss_dssp HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTCC--C-SSCCEE
T ss_pred cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCccc--c-CcccEE
Confidence 367899999999998 455 688899999999999999854 44 889999999999999998 676633 3 899999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++. ..+..+++|++|++++|++++. + .+..+++|++|++++|++++. ..+..+++|+.|++++|+++
T Consensus 112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 9999999853 3588999999999999999854 3 688899999999999999865 67899999999999999998
Q ss_pred eecchh
Q 025426 240 VMILNF 245 (253)
Q Consensus 240 ~~~p~~ 245 (253)
+.+...
T Consensus 186 ~~~~~~ 191 (263)
T 1xeu_A 186 NEPVKY 191 (263)
T ss_dssp CCCEEC
T ss_pred CCcccc
Confidence 775443
No 90
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.78 E-value=9.3e-19 Score=132.51 Aligned_cols=136 Identities=22% Similarity=0.177 Sum_probs=98.9
Q ss_pred CCCCCEEECCCCCCC-CcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426 104 LSSLQSLNLSCNRLS-GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT 182 (253)
Q Consensus 104 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 182 (253)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.++ .+ .. +..+++|++|++++|.+++.+|..+..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 356777777777776 566766777778888888888776 44 33 367777888888888877656666666778888
Q ss_pred EeeecCcCcccC-CccccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEeccCCCCceec
Q 025426 183 LSLAYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEIP---REFGNLTELEQFSLPTNNLQVMI 242 (253)
Q Consensus 183 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~ 242 (253)
|++++|.+++.. +..+..+++|++|++++|++++..+ ..+..+++|+.|++++|.+...+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 888888877432 2667778888888888888875544 46778888888888888876544
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=3e-18 Score=153.02 Aligned_cols=150 Identities=23% Similarity=0.304 Sum_probs=117.4
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.++++.|++++|.+++ +|. +.. +|+.|++++|.+++ +|. .+++|++|++++|.++ .+|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEE
Confidence 4567777777777774 555 443 77888888887774 555 5678888888888887 5665 46788899
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCC-------CeeecccCcCcccCChhhcCCCCCCEEe
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL-------KVLYIGANRLQGEIPREFGNLTELEQFS 232 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 232 (253)
++++|.+++ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|+
T Consensus 166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~ 236 (571)
T 3cvr_A 166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236 (571)
T ss_dssp ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence 999998885 666 55 88999999999998 6666 554 67 99999999998 6788888899999999
Q ss_pred ccCCCCceecchhhhhccc
Q 025426 233 LPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 233 l~~n~l~~~~p~~~~~l~~ 251 (253)
+++|++++.+|..++.+.+
T Consensus 237 L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 237 LEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp CCSSSCCHHHHHHHHHHHH
T ss_pred eeCCcCCCcCHHHHHHhhc
Confidence 9999999999999988754
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.77 E-value=1.1e-18 Score=147.42 Aligned_cols=181 Identities=17% Similarity=0.112 Sum_probs=133.7
Q ss_pred CCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCE-EEc
Q 025426 68 VCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKN-VSL 136 (253)
Q Consensus 68 ~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l 136 (253)
.|.+..+.|. .-+.++++|+|++|+|+...+..|.++++|++|++++|.+.+.++ .+|.+++++++ +.+
T Consensus 8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 3666677775 123568999999999996666678999999999999999865555 45677888765 556
Q ss_pred cCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC-------------------------CCC-CCcceEeeecCcC
Q 025426 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-------------------------SNC-TYLRTLSLAYNDF 190 (253)
Q Consensus 137 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------------~~l-~~L~~L~L~~n~l 190 (253)
.+|.+. .+++..|..+++|++|++++|.++...+..+ ..+ ..+++|++++|++
T Consensus 88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 678887 7777777888899999998888764333222 222 2466778888888
Q ss_pred cccCCccccCCCCCCeeeccc-CcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 191 SGAVPREIGNLTKLKVLYIGA-NRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 191 ~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
+ .++.......+|+.+++.+ |.++...++.|..+++|+.||+++|+++.+++..+.+++
T Consensus 167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~ 226 (350)
T 4ay9_X 167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226 (350)
T ss_dssp C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence 7 4455555567788888875 556644456789999999999999999988887777765
No 93
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=2.4e-18 Score=154.95 Aligned_cols=155 Identities=32% Similarity=0.375 Sum_probs=131.6
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
..++++.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+. .++. +..+++|+.
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~ 135 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLES 135 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCE
Confidence 35789999999999985544 8889999999999999974 33 6889999999999999998 5544 478999999
Q ss_pred EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. ..+..+++|+.|+|++|++
T Consensus 136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred EECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence 99999999854 678899999999999999996655 88999999999999999854 4689999999999999999
Q ss_pred ceecchhh
Q 025426 239 QVMILNFL 246 (253)
Q Consensus 239 ~~~~p~~~ 246 (253)
.+.+...+
T Consensus 210 ~~~p~~~~ 217 (605)
T 1m9s_A 210 LNKPINHQ 217 (605)
T ss_dssp ECCCCCCC
T ss_pred cCCccccc
Confidence 87654433
No 94
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=3.1e-18 Score=133.10 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=123.0
Q ss_pred CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc
Q 025426 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR 181 (253)
Q Consensus 102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 181 (253)
..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 45678999999999998 566 6899999999999999886 554 3 47899999999999999977888899999999
Q ss_pred eEeeecCcCcccCCccccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANR-LQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 182 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
+|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++.. .+..+++
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence 99999999998788899999999999999998 65 555 6999999999999999999754 4555543
No 95
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=5.9e-18 Score=131.03 Aligned_cols=109 Identities=27% Similarity=0.368 Sum_probs=51.1
Q ss_pred eEEEEEeCCCCccccCCc-cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 82 RVTVLNISSLNLRGTIPS-QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+++..+..+++|++|+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEE
Confidence 344455555544433322 2444445555555555554444444444555555555555554 33332224444555555
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 191 (253)
+++|.+++..|..+..+++|++|++++|.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 5555554444444444455555555555444
No 96
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.76 E-value=1.2e-17 Score=129.52 Aligned_cols=128 Identities=30% Similarity=0.357 Sum_probs=110.5
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
+.+++++++++ .+|..+. ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+++..|..+++|++|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence 46788888888 6666543 68999999999998 77888999999999999999998 77776668999999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 216 (253)
|.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 99997777889999999999999999996666678889999999999999863
No 97
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.1e-17 Score=146.46 Aligned_cols=149 Identities=28% Similarity=0.423 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .+++ +..+++|++|++
T Consensus 222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLEL 294 (466)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEEC
T ss_pred CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEc
Confidence 344444444444321 123344444444444444442221 444444444444444444 2332 234444445555
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
++|.+++..+ +..+++|++|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|+.|++++|++++.
T Consensus 295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 368 (466)
T 1o6v_A 295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL 368 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence 4444443222 3444445555555554443322 33444444444444444432 2344445555555555555444
Q ss_pred cc
Q 025426 242 IL 243 (253)
Q Consensus 242 ~p 243 (253)
+|
T Consensus 369 ~~ 370 (466)
T 1o6v_A 369 TP 370 (466)
T ss_dssp GG
T ss_pred ch
Confidence 44
No 98
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.76 E-value=1.4e-17 Score=127.18 Aligned_cols=130 Identities=22% Similarity=0.301 Sum_probs=94.5
Q ss_pred EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC
Q 025426 85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN 164 (253)
Q Consensus 85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 164 (253)
.+++++++++ .+|..+ .++|+.|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|++++|
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCC
Confidence 4555566666 445433 367888888888888655566777888888888888887 666666677888888888888
Q ss_pred cCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426 165 MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218 (253)
Q Consensus 165 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 218 (253)
.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 887655566777788888888888887555555667777888888888777543
No 99
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.75 E-value=3.9e-18 Score=129.06 Aligned_cols=137 Identities=23% Similarity=0.215 Sum_probs=117.9
Q ss_pred CCeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 80 SHRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
+++++.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+ ..+++|++
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~ 99 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTH 99 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCE
Confidence 367999999999998 77888889999999999999999855 778899999999999999995565544 77999999
Q ss_pred EEeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeecccCcCcccCCh
Q 025426 159 LSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYIGANRLQGEIPR 220 (253)
Q Consensus 159 L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~~~ 220 (253)
|++++|.+++... ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+. ..|+
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~ 164 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD 164 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence 9999999985432 788999999999999999995544 47889999999999999987 4443
No 100
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=2.3e-17 Score=138.79 Aligned_cols=140 Identities=26% Similarity=0.374 Sum_probs=98.7
Q ss_pred CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180 (253)
Q Consensus 101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 180 (253)
+..+++|+.|++++|.+.+ .+. +..+++|++|++++|.+. .++. +..+++|++|++++|.+++..+ +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence 3444555555555555542 222 455555666666666555 3333 3667788888888888874333 7788888
Q ss_pred ceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 181 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~ 251 (253)
++|++++|.+++. +.+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++..|..+..+++
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~ 312 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence 8888888888743 4677888999999999988754 46888999999999999999998888887764
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.75 E-value=7.9e-18 Score=147.40 Aligned_cols=151 Identities=28% Similarity=0.405 Sum_probs=132.1
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 158 (253)
..++++.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .+++ +..+++|++
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISP--ISNLKNLTY 313 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS-CCGG--GGGCTTCSE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc-Cchh--hcCCCCCCE
Confidence 34689999999999985544 8889999999999999985433 888999999999999998 5555 478999999
Q ss_pred EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
|++++|.+++..| +..+++|++|++++|.+++. ..+..+++|++|++++|++++..| +..+++|+.|++++|++
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence 9999999986655 77899999999999999864 578899999999999999997776 89999999999999999
Q ss_pred ceec
Q 025426 239 QVMI 242 (253)
Q Consensus 239 ~~~~ 242 (253)
++.+
T Consensus 388 ~~~p 391 (466)
T 1o6v_A 388 TNAP 391 (466)
T ss_dssp ECCC
T ss_pred cCCc
Confidence 8843
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=9.6e-18 Score=151.03 Aligned_cols=157 Identities=22% Similarity=0.328 Sum_probs=134.6
Q ss_pred CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
..+++.|++++|.+. .++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+. .++ . +..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-S-LKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-T-STTCTTCCEE
T ss_pred CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-h-hccCCCCCEE
Confidence 356889999999988 344 58889999999999999985444 889999999999999998 665 3 4789999999
Q ss_pred EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
++++|.+++ + ..+..+++|+.|++++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.++
T Consensus 115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence 999999985 3 4588999999999999999964 678899999999999999997655 999999999999999999
Q ss_pred eecchhhhhccc
Q 025426 240 VMILNFLQFYSS 251 (253)
Q Consensus 240 ~~~p~~~~~l~~ 251 (253)
+. | .+..+++
T Consensus 189 ~l-~-~l~~l~~ 198 (605)
T 1m9s_A 189 DL-R-ALAGLKN 198 (605)
T ss_dssp BC-G-GGTTCTT
T ss_pred CC-h-HHccCCC
Confidence 86 3 4665543
No 103
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=2.2e-19 Score=165.15 Aligned_cols=158 Identities=23% Similarity=0.290 Sum_probs=113.9
Q ss_pred EEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc
Q 025426 86 LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM 165 (253)
Q Consensus 86 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 165 (253)
+++..|.+. ..+..+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|+|++|.
T Consensus 206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~ 281 (727)
T 4b8c_D 206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNR 281 (727)
T ss_dssp -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSC
T ss_pred cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCc
Confidence 333333333 45667888889999999999987 77877888999999999999998 888776 788999999999999
Q ss_pred CCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCC-CCEEeccCCCCceecch
Q 025426 166 FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILN 244 (253)
Q Consensus 166 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~ 244 (253)
++ .+|..|..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+++.+|..+..+.. ...+++++|.+++.+|.
T Consensus 282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 98 77888899999999999999987 77888999999999999999998877777654321 12356666666666666
Q ss_pred hhhhc
Q 025426 245 FLQFY 249 (253)
Q Consensus 245 ~~~~l 249 (253)
.+..+
T Consensus 360 ~l~~l 364 (727)
T 4b8c_D 360 ERRFI 364 (727)
T ss_dssp C----
T ss_pred cccee
Confidence 55544
No 104
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=2.6e-19 Score=150.05 Aligned_cols=157 Identities=22% Similarity=0.235 Sum_probs=97.5
Q ss_pred CeEEEEEeCCCCcccc-CCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC-CCcCcCchhHhcCCCCccE
Q 025426 81 HRVTVLNISSLNLRGT-IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN-KLSGQIPTNICSNLPFLEF 158 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~ 158 (253)
++++.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++...+..+..+++|++
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5567777777766644 5555666677777777777766566666666777777777777 4553212222356667777
Q ss_pred EEeecC-cCCCC-CCccCCCCC-CcceEeeecC--cCc-ccCCccccCCCCCCeeecccCc-CcccCChhhcCCCCCCEE
Q 025426 159 LSLSLN-MFHGG-IPSTLSNCT-YLRTLSLAYN--DFS-GAVPREIGNLTKLKVLYIGANR-LQGEIPREFGNLTELEQF 231 (253)
Q Consensus 159 L~l~~n-~~~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 231 (253)
|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 777777 66542 344455666 6777777666 333 2344555566667777776666 555555566666666677
Q ss_pred eccCCC
Q 025426 232 SLPTNN 237 (253)
Q Consensus 232 ~l~~n~ 237 (253)
++++|.
T Consensus 253 ~l~~~~ 258 (336)
T 2ast_B 253 SLSRCY 258 (336)
T ss_dssp ECTTCT
T ss_pred eCCCCC
Confidence 766664
No 105
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=3.2e-17 Score=126.98 Aligned_cols=126 Identities=26% Similarity=0.371 Sum_probs=67.8
Q ss_pred EEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecC
Q 025426 109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188 (253)
Q Consensus 109 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 188 (253)
.+++++|.++ .+|..+ .++|++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4555555554 344332 235555555555555 555332 55555555555555555444455555555555555555
Q ss_pred cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 189 DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 189 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555444455555555555555555555444444555555555555555553
No 106
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.74 E-value=3e-18 Score=127.12 Aligned_cols=127 Identities=24% Similarity=0.219 Sum_probs=66.7
Q ss_pred CCCCEEECCCCCCC-CcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceE
Q 025426 105 SSLQSLNLSCNRLS-GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTL 183 (253)
Q Consensus 105 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L 183 (253)
++++.|++++|.+. +.+|..+..+++|++|++++|.++ .+ .. +..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555544 344444445555555555555554 22 22 2445555555555555554444444445555555
Q ss_pred eeecCcCccc-CCccccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEecc
Q 025426 184 SLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGEIP---REFGNLTELEQFSLP 234 (253)
Q Consensus 184 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~ 234 (253)
++++|.+++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555555532 22455556666666666666654443 356666666666654
No 107
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.73 E-value=5.4e-17 Score=123.84 Aligned_cols=133 Identities=26% Similarity=0.284 Sum_probs=93.3
Q ss_pred CCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426 107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186 (253)
Q Consensus 107 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 186 (253)
.+.++++++.+. .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 456777777766 445433 357777777777777 5666555677777777777777775555566777777777777
Q ss_pred cCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 777776555566777777777777777775555556777777777777777776655
No 108
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=2.5e-17 Score=133.72 Aligned_cols=153 Identities=22% Similarity=0.304 Sum_probs=127.6
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.++++++.+++.. .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .+++ +..+++|++|++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEEC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEEC
Confidence 4566778888887443 4678899999999999998 455 6889999999999999998 6776 589999999999
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
++|.+++ ++. +.. ++|++|++++|.+++. +.+..+++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence 9999985 443 233 8999999999999853 4688999999999999999864 3 689999999999999999987
Q ss_pred cchhhhhcc
Q 025426 242 ILNFLQFYS 250 (253)
Q Consensus 242 ~p~~~~~l~ 250 (253)
..+..++
T Consensus 166 --~~l~~l~ 172 (263)
T 1xeu_A 166 --GGLTRLK 172 (263)
T ss_dssp --TTSTTCC
T ss_pred --HHhccCC
Confidence 4555554
No 109
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=7.3e-19 Score=147.31 Aligned_cols=169 Identities=19% Similarity=0.213 Sum_probs=142.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc-CChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS-IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.+++.+++++|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L 147 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL 147 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence 5688999999998866655 56789999999999998755 77788899999999999999986666666 779999999
Q ss_pred EeecC-cCCCC-CCccCCCCCCcceEeeecC-cCccc-CCccccCCC-CCCeeecccC--cCc-ccCChhhcCCCCCCEE
Q 025426 160 SLSLN-MFHGG-IPSTLSNCTYLRTLSLAYN-DFSGA-VPREIGNLT-KLKVLYIGAN--RLQ-GEIPREFGNLTELEQF 231 (253)
Q Consensus 160 ~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L 231 (253)
++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|
T Consensus 148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 99999 67652 5666788999999999999 88854 567788889 9999999999 555 4567788899999999
Q ss_pred eccCCC-Cceecchhhhhccc
Q 025426 232 SLPTNN-LQVMILNFLQFYSS 251 (253)
Q Consensus 232 ~l~~n~-l~~~~p~~~~~l~~ 251 (253)
++++|. +++..+..+..+++
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTT
T ss_pred eCCCCCcCCHHHHHHHhCCCC
Confidence 999999 78777777776653
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.72 E-value=8.4e-18 Score=124.68 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=111.7
Q ss_pred CeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
++++.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+++.+|..+ ..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence 57899999999998 78888889999999999999999855 778899999999999999995566654 779999999
Q ss_pred EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeeccc
Q 025426 160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYIGA 211 (253)
Q Consensus 160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~ 211 (253)
++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999853 34778999999999999999996655 4788899999999863
No 111
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.72 E-value=2.2e-17 Score=147.38 Aligned_cols=143 Identities=26% Similarity=0.367 Sum_probs=80.4
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
+++.|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|++++|.++ .+|. .+++|++|++
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L 147 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINA 147 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEEC
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeC
Confidence 4555555555555 333 234555555555555553 444 332 5666666666665 3544 3456666666
Q ss_pred ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC-------CEEecc
Q 025426 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL-------EQFSLP 234 (253)
Q Consensus 162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~ 234 (253)
++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+|. +.. +| +.|+++
T Consensus 148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls 215 (571)
T 3cvr_A 148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR 215 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence 6666653 443 34566777777777664 454 44 67777777777776 4454 433 55 777777
Q ss_pred CCCCceecchhhhhcc
Q 025426 235 TNNLQVMILNFLQFYS 250 (253)
Q Consensus 235 ~n~l~~~~p~~~~~l~ 250 (253)
+|.|+. +|..+..++
T Consensus 216 ~N~l~~-lp~~l~~l~ 230 (571)
T 3cvr_A 216 ENRITH-IPENILSLD 230 (571)
T ss_dssp SSCCCC-CCGGGGGSC
T ss_pred CCccee-cCHHHhcCC
Confidence 777774 444444444
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=8.6e-19 Score=149.89 Aligned_cols=167 Identities=18% Similarity=0.284 Sum_probs=104.6
Q ss_pred CCeEEEEEeCCCCccc----cCCccCCCCCCCCEEECCCCCCCCcCChhh----hcc---------CCCCEEEccCCCCc
Q 025426 80 SHRVTVLNISSLNLRG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSTI----FTI---------YTLKNVSLGKNKLS 142 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~ 142 (253)
.++++.|++++|.+.+ .++..+..+++|+.|++++|.+....+..+ ..+ ++|++|++++|.++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3567777777777765 355556667777777777777653333333 233 67777777777775
Q ss_pred -CcCch--hHhcCCCCccEEEeecCcCCC-----CCCccCCCCCCcceEeeecCcCc----ccCCccccCCCCCCeeecc
Q 025426 143 -GQIPT--NICSNLPFLEFLSLSLNMFHG-----GIPSTLSNCTYLRTLSLAYNDFS----GAVPREIGNLTKLKVLYIG 210 (253)
Q Consensus 143 -~~~~~--~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~ 210 (253)
+.++. ..+..+++|++|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 23331 122456677777777777652 22335666777777777777774 3456666667777777777
Q ss_pred cCcCccc----CChhhcC--CCCCCEEeccCCCCce----ecchhh
Q 025426 211 ANRLQGE----IPREFGN--LTELEQFSLPTNNLQV----MILNFL 246 (253)
Q Consensus 211 ~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~~ 246 (253)
+|.+++. ++..+.. +++|+.|++++|.+++ .+|..+
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l 298 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence 7777654 3455533 6777777777777776 355544
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.71 E-value=2.4e-16 Score=137.70 Aligned_cols=155 Identities=22% Similarity=0.248 Sum_probs=100.1
Q ss_pred CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh----------
Q 025426 79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN---------- 148 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~---------- 148 (253)
..++++.|++++|.+++. + +..+++|++|++++|.+++ ++ +..+++|++|++++|.+++ ++-.
T Consensus 83 ~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l 155 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDC 155 (457)
T ss_dssp TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEEC
Confidence 345677777777777643 2 6667777777777777664 33 5666666666666666652 3210
Q ss_pred ---------HhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCC
Q 025426 149 ---------ICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219 (253)
Q Consensus 149 ---------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~ 219 (253)
.+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +|
T Consensus 156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 156 HLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp TTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred CCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence 02344556666666666653 33 55666677777777766643 36677778888888888875 44
Q ss_pred hhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426 220 REFGNLTELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 220 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
+..+++|+.|++++|++++.++..+..+
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L 256 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKL 256 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence 7778888888888888887776655544
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=3.3e-16 Score=136.86 Aligned_cols=143 Identities=22% Similarity=0.263 Sum_probs=84.7
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|++++|.++ .++ +..+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEE
Confidence 4556666666665542 2 55556666666666666532 2 555666666666666665 343 25556666666
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 240 (253)
+++|.+++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|++++
T Consensus 134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~ 205 (457)
T 3bz5_A 134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK 205 (457)
T ss_dssp CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence 666666542 2555666666666666433333 35566677777777777764 33 6667777777777777766
Q ss_pred e
Q 025426 241 M 241 (253)
Q Consensus 241 ~ 241 (253)
.
T Consensus 206 ~ 206 (457)
T 3bz5_A 206 L 206 (457)
T ss_dssp C
T ss_pred e
Confidence 5
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.69 E-value=5.4e-18 Score=144.89 Aligned_cols=168 Identities=18% Similarity=0.259 Sum_probs=129.1
Q ss_pred CCCeEEEEEeCCCCc---cccCCccC-------CCCCCCCEEECCCCCCCC----cCChhhhccCCCCEEEccCCCCcCc
Q 025426 79 HSHRVTVLNISSLNL---RGTIPSQL-------GNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVSLGKNKLSGQ 144 (253)
Q Consensus 79 ~~~~l~~L~l~~~~l---~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 144 (253)
..++++.|++++|.+ .+.+|..+ ..+++|+.|++++|.+.. .++..+..+++|++|++++|.+++.
T Consensus 58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~ 137 (386)
T 2ca6_A 58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ 137 (386)
T ss_dssp TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence 346788999998644 44555444 678899999999999886 4677788899999999999998633
Q ss_pred CchhHh---cCC---------CCccEEEeecCcCC-CCCC---ccCCCCCCcceEeeecCcCcc-----cCCccccCCCC
Q 025426 145 IPTNIC---SNL---------PFLEFLSLSLNMFH-GGIP---STLSNCTYLRTLSLAYNDFSG-----AVPREIGNLTK 203 (253)
Q Consensus 145 ~~~~~~---~~l---------~~L~~L~l~~n~~~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~ 203 (253)
.+..+. ..+ ++|++|++++|.++ ..++ ..+..+++|++|++++|+++. ..+..+..+++
T Consensus 138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 232221 233 88999999999987 3344 456678899999999999873 23447788899
Q ss_pred CCeeecccCcCc----ccCChhhcCCCCCCEEeccCCCCcee----cchhh
Q 025426 204 LKVLYIGANRLQ----GEIPREFGNLTELEQFSLPTNNLQVM----ILNFL 246 (253)
Q Consensus 204 L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~ 246 (253)
|++|++++|.++ +.+|..+..+++|+.|++++|.+++. +|..+
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 999999999986 46788889999999999999999876 45554
No 116
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=6.9e-18 Score=143.14 Aligned_cols=166 Identities=25% Similarity=0.247 Sum_probs=102.0
Q ss_pred eEEEEEeCCCCccccCCccCCCC-----CCCCEEECCCCCCCCcCChhhhc----c-CCCCEEEccCCCCcCcCchhH--
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNL-----SSLQSLNLSCNRLSGSIPSTIFT----I-YTLKNVSLGKNKLSGQIPTNI-- 149 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~~-- 149 (253)
++++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+.. + ++|++|++++|.+++..+..+
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 131 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ 131 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence 57777777777765555544443 67777777777776555544433 2 677777777777763333222
Q ss_pred -hcC-CCCccEEEeecCcCCCCCC----ccCCCCC-CcceEeeecCcCcccCCccc----cCC-CCCCeeecccCcCccc
Q 025426 150 -CSN-LPFLEFLSLSLNMFHGGIP----STLSNCT-YLRTLSLAYNDFSGAVPREI----GNL-TKLKVLYIGANRLQGE 217 (253)
Q Consensus 150 -~~~-l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~ 217 (253)
+.. ..+|++|++++|.+++..+ ..+...+ +|++|++++|.+++..+..+ ... ++|++|++++|.+++.
T Consensus 132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 122 2477777777777764332 2233444 77777777777775555433 333 4788888888887753
Q ss_pred ----CChhhcC-CCCCCEEeccCCCCceecchhhh
Q 025426 218 ----IPREFGN-LTELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 218 ----~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
++..+.. .++|+.|++++|.+++..+..+.
T Consensus 212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 246 (362)
T 3goz_A 212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK 246 (362)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence 3444544 35788888888888776664443
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1e-18 Score=156.36 Aligned_cols=158 Identities=20% Similarity=0.189 Sum_probs=131.0
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-------------CCCcCChhhhc--------------------
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-------------LSGSIPSTIFT-------------------- 127 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~l~~-------------------- 127 (253)
++++.|++++|.+. .+|..+..+++|+.|++++|. ..+..|..+..
T Consensus 349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~ 427 (567)
T 1dce_A 349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 427 (567)
T ss_dssp TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence 34557778888876 778888888888888886653 33333322211
Q ss_pred ------------cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC
Q 025426 128 ------------IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195 (253)
Q Consensus 128 ------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 195 (253)
...|++|++++|.++ .+|. +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|
T Consensus 428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp 502 (567)
T 1dce_A 428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD 502 (567)
T ss_dssp HHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred hhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence 125889999999998 6886 488999999999999998 789999999999999999999995 66
Q ss_pred ccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEeccCCCCceecchh
Q 025426 196 REIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSLPTNNLQVMILNF 245 (253)
Q Consensus 196 ~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~ 245 (253)
.+..+++|++|++++|.+++.. |..++.+++|+.|++++|++++.+|..
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 8999999999999999999776 999999999999999999999887743
No 118
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.68 E-value=4e-16 Score=140.81 Aligned_cols=89 Identities=24% Similarity=0.229 Sum_probs=66.0
Q ss_pred CCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEec
Q 025426 154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233 (253)
Q Consensus 154 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 233 (253)
++|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus 221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L 291 (622)
T 3g06_A 221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL 291 (622)
T ss_dssp TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence 445555555555552 33 33466777777777776 4444 4578899999999988 77888999999999999
Q ss_pred cCCCCceecchhhhhccc
Q 025426 234 PTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 234 ~~n~l~~~~p~~~~~l~~ 251 (253)
++|++++.+|..++.+++
T Consensus 292 ~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 292 EGNPLSERTLQALREITS 309 (622)
T ss_dssp CSCCCCHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHhccc
Confidence 999999999998887653
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.67 E-value=5.5e-17 Score=123.74 Aligned_cols=130 Identities=15% Similarity=0.147 Sum_probs=62.6
Q ss_pred CCCCCCEEECCCCCCCCcCChhhhccC-CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc
Q 025426 103 NLSSLQSLNLSCNRLSGSIPSTIFTIY-TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR 181 (253)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 181 (253)
...+|+.|++++|.++ .++. +..+. +|++|++++|.++ .+ +. +..+++|++|++++|.+++..+..+..+++|+
T Consensus 17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3444555555555554 2222 22222 5555555555554 22 11 24455555555555555432223334555555
Q ss_pred eEeeecCcCcccCCc--cccCCCCCCeeecccCcCcccCCh----hhcCCCCCCEEeccCCCCc
Q 025426 182 TLSLAYNDFSGAVPR--EIGNLTKLKVLYIGANRLQGEIPR----EFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 182 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~ 239 (253)
+|++++|.++ .+|. .+..+++|++|++++|+++ ..|. .+..+++|+.||+++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 5555555554 2333 4455555555555555554 2333 2555556666666555543
No 120
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.66 E-value=3.4e-17 Score=138.91 Aligned_cols=162 Identities=24% Similarity=0.283 Sum_probs=129.2
Q ss_pred CCeEEEEEeCCCCccccCC----ccCCCCC-CCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhH
Q 025426 80 SHRVTVLNISSLNLRGTIP----SQLGNLS-SLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNI 149 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~ 149 (253)
..+++.|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+ ++|++|++++|.+++..+..+
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 3569999999999987666 6677888 89999999999997777777775 999999999999985555433
Q ss_pred ---hcCC-CCccEEEeecCcCCCCCCccC----CC-CCCcceEeeecCcCcccCC----ccccCCC-CCCeeecccCcCc
Q 025426 150 ---CSNL-PFLEFLSLSLNMFHGGIPSTL----SN-CTYLRTLSLAYNDFSGAVP----REIGNLT-KLKVLYIGANRLQ 215 (253)
Q Consensus 150 ---~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~ 215 (253)
+..+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+++..+ ..+...+ +|++|++++|.++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~ 180 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA 180 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence 2344 899999999999986655443 33 3699999999999986444 3345555 9999999999998
Q ss_pred ccCChh----hcCC-CCCCEEeccCCCCcee
Q 025426 216 GEIPRE----FGNL-TELEQFSLPTNNLQVM 241 (253)
Q Consensus 216 ~~~~~~----~~~l-~~L~~L~l~~n~l~~~ 241 (253)
+..+.. +..+ ++|+.|++++|.+++.
T Consensus 181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~ 211 (362)
T 3goz_A 181 SKNCAELAKFLASIPASVTSLDLSANLLGLK 211 (362)
T ss_dssp GSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred hhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence 776654 4455 5999999999999873
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.66 E-value=2e-16 Score=120.56 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=111.1
Q ss_pred CeEEEEEeCCCCccccCCccCCCC-CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNL-SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 159 (253)
.+++.|++++|+++ .++. +..+ ++|+.|++++|.+++. ..+..+++|++|++++|.++ .+|+.++..+++|++|
T Consensus 19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL 93 (176)
T ss_dssp TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence 67999999999998 4454 4444 4999999999999854 67889999999999999998 7787777889999999
Q ss_pred EeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCcc----ccCCCCCCeeecccCcCcc
Q 025426 160 SLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPRE----IGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 160 ~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~~ 216 (253)
++++|.++ .+|. .+..+++|++|++++|.+. ..|.. +..+++|++|++++|....
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999996 5565 7889999999999999998 55654 8889999999999998763
No 122
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.65 E-value=7.3e-16 Score=130.09 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=111.6
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE-EEee
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF-LSLS 162 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~ 162 (253)
++++-++++++ .+|..+. +++++|++++|+++...+.+|.++++|++|++++|.+.+.+|...|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 36788889988 7777663 689999999999995555678999999999999999876788888888988775 5667
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeeccc-CcCcccCChhhcCCC-CCCEEeccCCCCce
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA-NRLQGEIPREFGNLT-ELEQFSLPTNNLQV 240 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~ 240 (253)
.|+++...|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 7999877788899999999999999998855444443444444444433 233322223333332 34444444444444
Q ss_pred ecch
Q 025426 241 MILN 244 (253)
Q Consensus 241 ~~p~ 244 (253)
+++.
T Consensus 169 i~~~ 172 (350)
T 4ay9_X 169 IHNS 172 (350)
T ss_dssp ECTT
T ss_pred CChh
Confidence 4433
No 123
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.64 E-value=3.8e-19 Score=138.35 Aligned_cols=150 Identities=24% Similarity=0.332 Sum_probs=117.3
Q ss_pred EEEEEeCCCCccccCCc------cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426 83 VTVLNISSLNLRGTIPS------QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 156 (253)
++.++++++.+.+..|. .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+ ..+++|
T Consensus 20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L 95 (198)
T 1ds9_A 20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTL 95 (198)
T ss_dssp CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHC
T ss_pred ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcC
Confidence 34444444444444443 78889999999999999885 66 8889999999999999998 788755 667889
Q ss_pred cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCCh----------hhcCC
Q 025426 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPR----------EFGNL 225 (253)
Q Consensus 157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l 225 (253)
++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|. .+..+
T Consensus 96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l 173 (198)
T 1ds9_A 96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL 173 (198)
T ss_dssp SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence 999999999985 44 57788899999999999985332 4688899999999999998766554 37889
Q ss_pred CCCCEEeccCCCCce
Q 025426 226 TELEQFSLPTNNLQV 240 (253)
Q Consensus 226 ~~L~~L~l~~n~l~~ 240 (253)
++|+.|| +|.++.
T Consensus 174 ~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 174 PNLKKLD--GMPVDV 186 (198)
T ss_dssp SSCSEEC--CGGGTT
T ss_pred CCcEEEC--CcccCH
Confidence 9999887 666653
No 124
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.63 E-value=3.5e-16 Score=141.17 Aligned_cols=95 Identities=27% Similarity=0.312 Sum_probs=57.4
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
++++.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+.+|++|+
T Consensus 61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEE
Confidence 45666666666665 3443 3456666666666665 3444 4566666666666666 4544 345666777
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
+++|.++. +|.. +++|++|++++|.+++
T Consensus 128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 128 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 77776663 4432 3667777777777763
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.63 E-value=2.1e-15 Score=114.39 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=61.4
Q ss_pred CCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426 107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186 (253)
Q Consensus 107 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 186 (253)
.+.+++++|.++ .+|..+ .++|++|++++|.++ .+++..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 355666666665 345433 256666666666666 4433333566666666666666664444455666666666666
Q ss_pred cCcCcccCCccccCCCCCCeeecccCcCc
Q 025426 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
+|++++..+..+..+++|++|++++|+++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 66666444445556666666666666655
No 126
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.62 E-value=5.3e-15 Score=129.06 Aligned_cols=120 Identities=28% Similarity=0.425 Sum_probs=55.7
Q ss_pred CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426 105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS 184 (253)
Q Consensus 105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 184 (253)
++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|.. ..+|++|++++|.+++ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence 345555555555553 44 3555555555555555554 34332 1345555555555543 33 345555555555
Q ss_pred eecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426 185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
+++|.+++ +|... ++|++|++++|.++ .+| .++.+++|+.|++++|+++
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 55555442 22211 24444444444444 333 2444444444444444444
No 127
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.61 E-value=7.4e-15 Score=128.14 Aligned_cols=121 Identities=27% Similarity=0.428 Sum_probs=87.2
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
+++++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. ..+|++|++++|.++ .+|. +..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCCCCCCEEE
Confidence 578899999998885 66 58899999999999999884 5543 258888888888887 4663 47788888888
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 216 (253)
+++|.+++ +|... ++|++|++++|.++ .+| .+..+++|++|++++|++++
T Consensus 202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 88887764 33321 46667777777666 445 36666666666666666653
No 128
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=4.2e-17 Score=142.21 Aligned_cols=110 Identities=24% Similarity=0.207 Sum_probs=49.7
Q ss_pred eEEEEEeCCCCccccCCcc-CCCCCCCCEEECCCCCCCC----cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCC--
Q 025426 82 RVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP-- 154 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-- 154 (253)
+++.|+++++++++..... +..+++|+.|++++|.+.. .++..+..+++|++|++++|.+.+..+..++..+.
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 4555555555554322221 3344455555555555442 12333444455555555555554222333333333
Q ss_pred --CccEEEeecCcCCC----CCCccCCCCCCcceEeeecCcCc
Q 025426 155 --FLEFLSLSLNMFHG----GIPSTLSNCTYLRTLSLAYNDFS 191 (253)
Q Consensus 155 --~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~ 191 (253)
+|++|++++|.++. .++..+..+++|++|++++|.++
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 126 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence 35555555555442 22444445555555555555544
No 129
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=4e-15 Score=133.10 Aligned_cols=122 Identities=20% Similarity=0.256 Sum_probs=107.5
Q ss_pred CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEee
Q 025426 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL 185 (253)
Q Consensus 106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L 185 (253)
.|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence 58899999999985 676 999999999999999999 999876 889999999999999985 66 7999999999999
Q ss_pred ecCcCcccC-CccccCCCCCCeeecccCcCcccCCh---hhcCCCCCCEEec
Q 025426 186 AYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEIPR---EFGNLTELEQFSL 233 (253)
Q Consensus 186 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l 233 (253)
++|.+++.. |..+..+++|+.|++++|++++.+|. .+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999999776 99999999999999999999865442 3455899999874
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.60 E-value=4.6e-15 Score=112.88 Aligned_cols=104 Identities=21% Similarity=0.259 Sum_probs=68.2
Q ss_pred CEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeec
Q 025426 108 QSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAY 187 (253)
Q Consensus 108 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 187 (253)
+.+++++|.+. .+|..+. ++|++|++++|.+. .+++..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 56777777775 5555443 66777777777776 44444446677777777777777654445566677777777777
Q ss_pred CcCcccCCccccCCCCCCeeecccCcCc
Q 025426 188 NDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 188 n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
|++++..+..+..+++|++|++++|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777444444666777777777777765
No 131
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=1.1e-17 Score=130.08 Aligned_cols=135 Identities=26% Similarity=0.363 Sum_probs=113.0
Q ss_pred CCCCCEEECCCCCCCCcCCh------hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC
Q 025426 104 LSSLQSLNLSCNRLSGSIPS------TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177 (253)
Q Consensus 104 l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 177 (253)
...++.++++.+.+.+..|. .+..+++|++|++++|.++ .+| .+ ..+++|++|++++|.++ .+|..+..+
T Consensus 17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~-~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CH-HHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cc-ccCCCCCEEECCCCCcc-cccchhhcC
Confidence 44566666666666655555 8999999999999999998 677 44 78999999999999998 677777778
Q ss_pred CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEeccCCCCceecch
Q 025426 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP-REFGNLTELEQFSLPTNNLQVMILN 244 (253)
Q Consensus 178 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~ 244 (253)
++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 999999999999985 44 67888999999999999985332 5789999999999999999888765
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=7.9e-17 Score=140.47 Aligned_cols=161 Identities=20% Similarity=0.201 Sum_probs=103.4
Q ss_pred CeEEEEEeCCCCccccC-----CccCCCCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcCcCchhH--
Q 025426 81 HRVTVLNISSLNLRGTI-----PSQLGNLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQIPTNI-- 149 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-- 149 (253)
++++.|++++|.+.+.. +..+..+++|+.|++++|.++.. ++..+..+++|++|++++|.+.+..+..+
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 45666666666655321 22223456777777777776633 45556667777777777777753322222
Q ss_pred --hcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCccccC-----CCCCCeeecccCcCcc--
Q 025426 150 --CSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREIGN-----LTKLKVLYIGANRLQG-- 216 (253)
Q Consensus 150 --~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~-- 216 (253)
....++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 12235777777777777643 3445556678888888888877554443332 5678888888888875
Q ss_pred --cCChhhcCCCCCCEEeccCCCCcee
Q 025426 217 --EIPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 217 --~~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
.+|..+..+++|++|++++|++++.
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5677777788888888888888754
No 133
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.58 E-value=1e-14 Score=110.56 Aligned_cols=107 Identities=23% Similarity=0.295 Sum_probs=95.1
Q ss_pred EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
.+.+++++++++ .+|..+. ++|+.|++++|.+++..|..+..+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence 357889999998 5776553 88999999999999888889999999999999999999 8888877899999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 193 (253)
+|.+++..+..|..+++|++|++++|.+...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 9999976667799999999999999998743
No 134
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=3.9e-15 Score=124.54 Aligned_cols=97 Identities=16% Similarity=0.083 Sum_probs=85.2
Q ss_pred CCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCC-eeecccCcCcccCChhhcCCCCCCEE
Q 025426 153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK-VLYIGANRLQGEIPREFGNLTELEQF 231 (253)
Q Consensus 153 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (253)
+++|+++++++|.++.....+|.++++|+.+++..| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 678999999999998666678999999999999998 7767778899999999 999988 6765677899999999999
Q ss_pred eccCCCCceecchhhhhccc
Q 025426 232 SLPTNNLQVMILNFLQFYSS 251 (253)
Q Consensus 232 ~l~~n~l~~~~p~~~~~l~~ 251 (253)
++++|+++.+.+..|.++++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~ 322 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVP 322 (329)
T ss_dssp EECSSCCCEECTTTTCTTCC
T ss_pred EeCCCccCccchhhhcCCcc
Confidence 99999999999999988865
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.57 E-value=1.7e-14 Score=109.75 Aligned_cols=105 Identities=24% Similarity=0.333 Sum_probs=94.5
Q ss_pred EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
+.++++++++. .+|..+. ++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|...|..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 58999999997 7777664 89999999999999888889999999999999999999 78888778999999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
|.+++..+..|..+++|++|++++|.+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99996656669999999999999999883
No 136
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=8.8e-16 Score=130.61 Aligned_cols=169 Identities=18% Similarity=0.196 Sum_probs=118.0
Q ss_pred CeEEEEEeCCCCccccCCcc----CC-CCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHh----
Q 025426 81 HRVTVLNISSLNLRGTIPSQ----LG-NLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNIC---- 150 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~---- 150 (253)
..++.|++++|.++...... +. ...+|+.|++++|.+.......+. .+.+|++|++++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45789999999887433322 22 236889999999988744333333 467889999999988733222221
Q ss_pred cCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCccc----C
Q 025426 151 SNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGE----I 218 (253)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~ 218 (253)
...++|++|++++|.++.. ++..+...++|++|++++|.+++. ++..+...++|++|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2457899999999988642 334456778899999999988753 245566677899999999998753 3
Q ss_pred ChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426 219 PREFGNLTELEQFSLPTNNLQVMILNFLQFY 249 (253)
Q Consensus 219 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l 249 (253)
...+...++|++|++++|.|++.-...+..+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~ 262 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSEGRQVLRDL 262 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred HHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence 4455667889999999999887666655543
No 137
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=7.3e-13 Score=110.69 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=93.6
Q ss_pred cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc-eEeeecCcCcccCCccccCCCCCCe
Q 025426 128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR-TLSLAYNDFSGAVPREIGNLTKLKV 206 (253)
Q Consensus 128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~ 206 (253)
+++|+++++++|.++ .+++..|.++.+|+++++.+| ++...+.+|.++++|+ .+++.. .++...+..|.++++|+.
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY 301 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence 679999999999998 999999999999999999998 7756668899999999 999998 777677889999999999
Q ss_pred eecccCcCcccCChhhcCCCCCCEEec
Q 025426 207 LYIGANRLQGEIPREFGNLTELEQFSL 233 (253)
Q Consensus 207 L~l~~n~l~~~~~~~~~~l~~L~~L~l 233 (253)
+++.+|.++...+.+|.++++|+.++.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999998777889999999999874
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.42 E-value=6.1e-13 Score=111.84 Aligned_cols=103 Identities=17% Similarity=0.213 Sum_probs=81.3
Q ss_pred EEECCCC-CCCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426 109 SLNLSCN-RLSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186 (253)
Q Consensus 109 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~ 186 (253)
.++.+++ .++ .+|. +..+.+|++|+|++ |.+. .+++..|..+.+|++|+|++|.+++..|..|..+++|++|+|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 4677777 777 5777 88888888899886 8887 6666666888888888888888887777788888888888888
Q ss_pred cCcCcccCCccccCCCCCCeeecccCcCc
Q 025426 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
+|++++..+..+..++ |+.|++.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888855555555544 888888888876
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.37 E-value=1.6e-12 Score=109.25 Aligned_cols=103 Identities=20% Similarity=0.193 Sum_probs=87.9
Q ss_pred EEeCCC-CccccCCccCCCCCCCCEEECCC-CCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426 86 LNISSL-NLRGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163 (253)
Q Consensus 86 L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 163 (253)
++.+++ +++ .+|. +..+.+|+.|+|++ |.+.+..+..|..+++|++|+|++|.++ .+++..|..+++|++|+|++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCC
Confidence 355566 677 5787 99999999999996 9999777788999999999999999999 56666669999999999999
Q ss_pred CcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192 (253)
Q Consensus 164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 192 (253)
|.+++..+..|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 999966666666665 9999999999873
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=1.6e-13 Score=116.60 Aligned_cols=140 Identities=20% Similarity=0.201 Sum_probs=108.4
Q ss_pred CCCCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC----
Q 025426 104 LSSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL---- 174 (253)
Q Consensus 104 l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---- 174 (253)
+++|+.|++++|.++......+... .+|++|++++|.++......+...+.+|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4679999999999985555555443 6999999999999744444444556789999999999975443333
Q ss_pred -CCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEeccCCCCceecc
Q 025426 175 -SNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGE----IPREFGNLTELEQFSLPTNNLQVMIL 243 (253)
Q Consensus 175 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p 243 (253)
...++|++|++++|.+++. ++..+...++|++|+|++|.+.+. ++..+...++|+.|++++|.+++...
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence 3467899999999999753 344457789999999999999863 35667788899999999999986543
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.27 E-value=1.7e-12 Score=116.49 Aligned_cols=39 Identities=8% Similarity=0.090 Sum_probs=16.6
Q ss_pred CCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCC
Q 025426 103 NLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKL 141 (253)
Q Consensus 103 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l 141 (253)
.+++|++|++++|.+.+. ++..+..+++|++|++++|.+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~ 204 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF 204 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence 344555555555544322 112223344444444444444
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.26 E-value=4.7e-13 Score=120.10 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=80.3
Q ss_pred CCCCCEEECCCCCCCCcCChhhhc-cCCCCEEEcc----CCCCcCc-----CchhHhcCCCCccEEEeecCc--CCCCCC
Q 025426 104 LSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLG----KNKLSGQ-----IPTNICSNLPFLEFLSLSLNM--FHGGIP 171 (253)
Q Consensus 104 l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~--~~~~~~ 171 (253)
+++|+.|+++.|.+++..+..+.. +++|++|+++ .|.+++. ++. ++..+++|++|++++|. +++..+
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~ 455 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGL 455 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHH
Confidence 455555555555555444444443 5566666664 4445421 111 22446666666665432 433322
Q ss_pred ccC-CCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEeccCCCCcee
Q 025426 172 STL-SNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGE-IPREFGNLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 172 ~~~-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~ 241 (253)
..+ ..+++|++|++++|++++. ++..+..+++|++|++++|++++. ++..+..+++|+.|++++|++++.
T Consensus 456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 222 2367788888888877652 344456778888888888887654 344456778888888888887754
No 143
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.18 E-value=3.1e-10 Score=97.34 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=81.2
Q ss_pred eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426 82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161 (253)
Q Consensus 82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 161 (253)
.++.+.+.. .+.......|.++.+|+.+++.+|.++.....+|. ..+|+.+.+..+ +. .++...|..+.+|+.+++
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence 356666664 45545556677777777777777766633333333 456666666533 44 555555566666666666
Q ss_pred ecC---------------------cCCCCCCccCCCCCCcceEeeecCcCc-----ccCCccccCCCCCCeeecccCcCc
Q 025426 162 SLN---------------------MFHGGIPSTLSNCTYLRTLSLAYNDFS-----GAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 162 ~~n---------------------~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
..+ .++.....+|.++++|+.+.+.+|.+. ...+..|.++++|+.+++.+ .++
T Consensus 234 ~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~ 312 (401)
T 4fdw_A 234 PENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR 312 (401)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred CCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence 543 122122334444445555554444332 12333444445555555542 233
Q ss_pred ccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426 216 GEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248 (253)
Q Consensus 216 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 248 (253)
.....+|.++++|+.+++..| ++.+.+..|.+
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~ 344 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN 344 (401)
T ss_dssp EECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence 333444555555555555332 44444444443
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.16 E-value=2.7e-10 Score=97.63 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=114.9
Q ss_pred CeEEEEEeCCCCccccCCcc----------------------CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccC
Q 025426 81 HRVTVLNISSLNLRGTIPSQ----------------------LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 138 (253)
.+++.+++.+|.++...... |.++.+|+.+++..+ ++..-..+|.. .+|+.+.+ .
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p 256 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-P 256 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-E
T ss_pred ccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-C
Confidence 45777777776665333333 334444444444432 22222233333 45555555 2
Q ss_pred CCCcCcCchhHhcCCCCccEEEeecCcCC-----CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFH-----GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 139 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~ 213 (253)
+.+. .++...|..+.+|+.+++.+|.+. ...+.+|.++++|+.+.+.. .++......|.++++|+.+++..+
T Consensus 257 ~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~- 333 (401)
T 4fdw_A 257 NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN- 333 (401)
T ss_dssp TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence 3455 677778899999999999998764 34557899999999999994 577667788999999999999665
Q ss_pred CcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 214 LQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 214 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
++.....+|..+ +|+.+++.+|.+....+..|.+++
T Consensus 334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 655667889999 999999999998888877777765
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.10 E-value=2.9e-12 Score=114.94 Aligned_cols=88 Identities=15% Similarity=0.132 Sum_probs=47.6
Q ss_pred cCCCCccEEEeecCcCCCCCCccCCC-CCCcceEeeecCcCcccCCccc-cCCCCCCeeecccCcCcccCCh-hhcCCCC
Q 025426 151 SNLPFLEFLSLSLNMFHGGIPSTLSN-CTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPR-EFGNLTE 227 (253)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~ 227 (253)
..+++|++|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.... ....+++
T Consensus 429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~ 507 (594)
T 2p1m_B 429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET 507 (594)
T ss_dssp HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence 3344555555544 333222222222 5666777777766654433333 4466777777777776543332 3344667
Q ss_pred CCEEeccCCCCc
Q 025426 228 LEQFSLPTNNLQ 239 (253)
Q Consensus 228 L~~L~l~~n~l~ 239 (253)
|+.|++++|+++
T Consensus 508 L~~L~l~~~~~~ 519 (594)
T 2p1m_B 508 MRSLWMSSCSVS 519 (594)
T ss_dssp SSEEEEESSCCB
T ss_pred CCEEeeeCCCCC
Confidence 777777777664
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.04 E-value=5.6e-12 Score=113.06 Aligned_cols=163 Identities=18% Similarity=0.119 Sum_probs=89.5
Q ss_pred CeEEEEEeCCCCccccC-CccCCCCCCCCEEECCCC---------------------------------CCCCcCChhhh
Q 025426 81 HRVTVLNISSLNLRGTI-PSQLGNLSSLQSLNLSCN---------------------------------RLSGSIPSTIF 126 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n---------------------------------~l~~~~~~~l~ 126 (253)
++++.|++++|.+++.. ...+..+++|+.|++++| .+++.....+.
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~ 368 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS 368 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence 56788888888765332 222345566666666555 11111111111
Q ss_pred -ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee--c----CcCCCCC-----CccCCCCCCcceEeeecCcCcccC
Q 025426 127 -TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS--L----NMFHGGI-----PSTLSNCTYLRTLSLAYNDFSGAV 194 (253)
Q Consensus 127 -~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~--~----n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~ 194 (253)
.+++|++|.+..|.+++.....+...+++|++|+++ + +.++... +..+..+++|+.|++++ .+++..
T Consensus 369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~ 447 (594)
T 2p1m_B 369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV 447 (594)
T ss_dssp HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence 244555555444554433333332345666666666 2 3333111 11134556667777755 444433
Q ss_pred CccccC-CCCCCeeecccCcCcccCChhh-cCCCCCCEEeccCCCCceecch
Q 025426 195 PREIGN-LTKLKVLYIGANRLQGEIPREF-GNLTELEQFSLPTNNLQVMILN 244 (253)
Q Consensus 195 p~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~ 244 (253)
+..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus 448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 344443 6788888888888876555444 6688999999999988654443
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=9.3e-10 Score=92.95 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=110.2
Q ss_pred CCeEEEEEeCCCCcc---------ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHh
Q 025426 80 SHRVTVLNISSLNLR---------GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC 150 (253)
Q Consensus 80 ~~~l~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~ 150 (253)
.++++.|.+.+.... +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.++......+.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 357888888765331 123344567899999999887311 2333 3 378999999999988644333332
Q ss_pred -cCCCCccEEEeec--CcCCCC-----CCccC--CCCCCcceEeeecCcCcccCCcccc---CCCCCCeeecccCcCccc
Q 025426 151 -SNLPFLEFLSLSL--NMFHGG-----IPSTL--SNCTYLRTLSLAYNDFSGAVPREIG---NLTKLKVLYIGANRLQGE 217 (253)
Q Consensus 151 -~~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~l~~n~l~~~ 217 (253)
..+++|++|+|+. |...+. +...+ ..+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 2689999999864 222111 11122 3578999999999998754333332 468999999999999864
Q ss_pred C----ChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426 218 I----PREFGNLTELEQFSLPTNNLQVMILNFLQ 247 (253)
Q Consensus 218 ~----~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 247 (253)
. +..+..+++|+.|++++|.+++.--..+.
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 3 33345679999999999988755444443
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.79 E-value=1.2e-09 Score=83.58 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=35.0
Q ss_pred CCCcceEeeecCcCccc----CCccccCCCCCCeeec--ccCcCccc----CChhhcCCCCCCEEeccCCCCc
Q 025426 177 CTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYI--GANRLQGE----IPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 177 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
.++|++|++++|.+++. +...+...+.|++|++ ++|.+.+. +...+...+.|+.|++++|.+.
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 34455555555555432 2333444556666666 55666542 2344555677777777777764
No 149
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=3.4e-09 Score=89.47 Aligned_cols=157 Identities=15% Similarity=0.139 Sum_probs=105.4
Q ss_pred CeEEEEEeCCCCccc-c-------CCccCCCCCCCCEEECCCCCCC---------CcCChhhhccCCCCEEEccCCCCcC
Q 025426 81 HRVTVLNISSLNLRG-T-------IPSQLGNLSSLQSLNLSCNRLS---------GSIPSTIFTIYTLKNVSLGKNKLSG 143 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~ 143 (253)
..++.|.+......+ . +..+...+++|+.|.+...... +.+...+..+++|+.|++++|.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 457777777655331 1 1223446789999999765432 124455677899999999988422
Q ss_pred cCchhHhcCCCCccEEEeecCcCCCCCCccCC--CCCCcceEeeec--CcCccc-----CCccc--cCCCCCCeeecccC
Q 025426 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS--NCTYLRTLSLAY--NDFSGA-----VPREI--GNLTKLKVLYIGAN 212 (253)
Q Consensus 144 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~p~~l--~~l~~L~~L~l~~n 212 (253)
.+++ + .+++|++|++..+.++......+. .+++|++|+|.. |...+. +...+ ..+++|++|++.+|
T Consensus 186 ~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 4444 2 378999999999887644333343 689999999863 221111 11222 24789999999999
Q ss_pred cCcccCChhhc---CCCCCCEEeccCCCCcee
Q 025426 213 RLQGEIPREFG---NLTELEQFSLPTNNLQVM 241 (253)
Q Consensus 213 ~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~ 241 (253)
.+.+..+..+. .+++|+.|+|+.|.+++.
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 98764444443 578999999999999874
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=1.1e-09 Score=83.72 Aligned_cols=117 Identities=15% Similarity=0.117 Sum_probs=76.0
Q ss_pred CccCCCCCCCCEEECCCC-CCCCc----CChhhhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCC
Q 025426 98 PSQLGNLSSLQSLNLSCN-RLSGS----IPSTIFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHG 168 (253)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~ 168 (253)
...+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+ ...++|++|++++|.++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCH
Confidence 344556677777888777 66532 333445567788888888877632 22222 345678888888888764
Q ss_pred C----CCccCCCCCCcceEee--ecCcCccc----CCccccCCCCCCeeecccCcCc
Q 025426 169 G----IPSTLSNCTYLRTLSL--AYNDFSGA----VPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 169 ~----~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
. +...+...++|++|++ ++|.+++. +.+.+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 3455666678888888 77887743 2334455578888888888875
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.64 E-value=3.3e-09 Score=85.59 Aligned_cols=80 Identities=25% Similarity=0.357 Sum_probs=56.1
Q ss_pred cCCCCccEEEeecCcCCC--CCCccCCCCCCcceEeeecCcCcccCCccccCCC--CCCeeecccCcCcccCC-------
Q 025426 151 SNLPFLEFLSLSLNMFHG--GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT--KLKVLYIGANRLQGEIP------- 219 (253)
Q Consensus 151 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~~------- 219 (253)
..+++|++|+|++|.+++ .++..+..+++|+.|+|++|.+++. ..+..++ +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456778888888888875 3345556778888888888888754 2233333 78888888888876554
Q ss_pred hhhcCCCCCCEEe
Q 025426 220 REFGNLTELEQFS 232 (253)
Q Consensus 220 ~~~~~l~~L~~L~ 232 (253)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2367788888876
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.44 E-value=2.6e-07 Score=74.41 Aligned_cols=96 Identities=22% Similarity=0.221 Sum_probs=69.4
Q ss_pred EECCCCCCCCcCCh----hhhccCCCCEEEccCCCCcC--cCchhHhcCCCCccEEEeecCcCCCCC-CccCCCCCCcce
Q 025426 110 LNLSCNRLSGSIPS----TIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCTYLRT 182 (253)
Q Consensus 110 L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~ 182 (253)
++++.|... .++. ....+++|++|++++|.+++ .++..+ ..+++|++|+|++|.+++.. ...+..+ +|++
T Consensus 148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~ 224 (267)
T 3rw6_A 148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERELDKIKGL-KLEE 224 (267)
T ss_dssp CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSE
T ss_pred ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchhhhhcccC-Ccce
Confidence 566777433 2222 22568899999999999984 333433 67999999999999998541 1334444 8999
Q ss_pred EeeecCcCcccCCc-------cccCCCCCCeee
Q 025426 183 LSLAYNDFSGAVPR-------EIGNLTKLKVLY 208 (253)
Q Consensus 183 L~L~~n~l~~~~p~-------~l~~l~~L~~L~ 208 (253)
|++.+|.+.+..|. .+..+++|+.||
T Consensus 225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred EEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 99999999876652 356788999887
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.34 E-value=1.9e-07 Score=70.26 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=57.8
Q ss_pred CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc-CCCCCCccCCCC----CCcceEeeecCc-CcccCCccccCCC
Q 025426 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM-FHGGIPSTLSNC----TYLRTLSLAYND-FSGAVPREIGNLT 202 (253)
Q Consensus 129 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~ 202 (253)
.+|++||++++.++...-..+ ..+++|++|+|++|. ++...-..+..+ ++|++|++++|. +++..-..+.+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 468888888888774444444 677888888888884 664333444443 367888888774 6654445566677
Q ss_pred CCCeeecccCc-Cc
Q 025426 203 KLKVLYIGANR-LQ 215 (253)
Q Consensus 203 ~L~~L~l~~n~-l~ 215 (253)
+|+.|++++++ ++
T Consensus 140 ~L~~L~L~~c~~It 153 (176)
T 3e4g_A 140 NLKYLFLSDLPGVK 153 (176)
T ss_dssp TCCEEEEESCTTCC
T ss_pred CCCEEECCCCCCCC
Confidence 78888887775 44
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=6.5e-06 Score=69.58 Aligned_cols=145 Identities=15% Similarity=0.192 Sum_probs=100.6
Q ss_pred cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCC
Q 025426 100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179 (253)
Q Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~ 179 (253)
.+....+|+.+.+..+ +......++.....|+.+.+..+ ++ .+....|..+.+|+.+.+..+ ++......|.++++
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence 3445566777777554 33244556677788888888765 55 666777777888888888654 44344467888888
Q ss_pred cceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250 (253)
Q Consensus 180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~ 250 (253)
|+.+.+.++.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.+-..+|.+.+
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888888888777666677888888888888654 54455677888888888887654 5556566666553
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.32 E-value=2.7e-06 Score=72.43 Aligned_cols=133 Identities=11% Similarity=0.219 Sum_probs=77.7
Q ss_pred CccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC
Q 025426 98 PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177 (253)
Q Consensus 98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l 177 (253)
...|..+..|+.+.+..+... ....++.++..|+.+.+. +.+. .+++..|.++.+|+.+++..+ ++.....+|.++
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred cceeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 345666677777777655432 445566667777777775 3454 666667777777777777654 443444667777
Q ss_pred CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 178 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
.+|+.+.+..+ ++......|.++.+|+.+++.++... -..+..+.+|+.+.+..+.+
T Consensus 334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 77777777644 55455566777777777777766532 13455666677766655543
No 156
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.28 E-value=4.2e-07 Score=68.41 Aligned_cols=84 Identities=7% Similarity=0.082 Sum_probs=44.1
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhcc----CCCCEEEccCCC-CcCcCchhHhcCCC
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTI----YTLKNVSLGKNK-LSGQIPTNICSNLP 154 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l~ 154 (253)
..++.||++++.+++..-..+..+++|+.|+|++|. ++..--..+..+ ++|++|++++|. ++...-..+ ..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence 356777777776665555555666666666666664 442222233332 246666666653 442222222 3455
Q ss_pred CccEEEeecCc
Q 025426 155 FLEFLSLSLNM 165 (253)
Q Consensus 155 ~L~~L~l~~n~ 165 (253)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555553
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.23 E-value=9.2e-06 Score=69.15 Aligned_cols=157 Identities=18% Similarity=0.156 Sum_probs=103.9
Q ss_pred EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
++.+.+... ++......+..+..++.+.+..+... .....+.....++.+....+. ++...|..+.+|+.+.+.
T Consensus 232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~ 305 (394)
T 4fs7_A 232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLL 305 (394)
T ss_dssp CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEEC
T ss_pred CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccc
Confidence 344444332 22233445566667777777665443 445556667777777666543 445556778889988887
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 242 (253)
.+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++ .+
T Consensus 306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~ 380 (394)
T 4fs7_A 306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY 380 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG
T ss_pred cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh
Confidence 65 55455577888899999998754 66566778888999999998776 55566778999999999988754 22 22
Q ss_pred chhhhhcc
Q 025426 243 LNFLQFYS 250 (253)
Q Consensus 243 p~~~~~l~ 250 (253)
...|.+++
T Consensus 381 ~~~F~~c~ 388 (394)
T 4fs7_A 381 RYDFEDTT 388 (394)
T ss_dssp GGGBCTTC
T ss_pred hheecCCC
Confidence 34455443
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=2.2e-05 Score=66.34 Aligned_cols=140 Identities=12% Similarity=0.136 Sum_probs=106.3
Q ss_pred EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426 83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162 (253)
Q Consensus 83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 162 (253)
++.+.+..+ +.......+..+..|+.+.+..+ ++..-..++....+|+.+.+..+ +. .++...|..+.+|+.+.+.
T Consensus 219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEEC
T ss_pred cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccccccccc
Confidence 444444433 33345566778889999999776 55455667888899999999754 65 7788888999999999999
Q ss_pred cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 025426 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228 (253)
Q Consensus 163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 228 (253)
++.++.....+|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++.....+|.+++.+
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 98887666688999999999999765 66566778999999999998655 554556778777544
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.06 E-value=1.6e-05 Score=67.63 Aligned_cols=141 Identities=15% Similarity=0.145 Sum_probs=109.0
Q ss_pred CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426 81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160 (253)
Q Consensus 81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 160 (253)
..++.+.+..+... .....|..+..++.+.+..+.+ ....+..+.+|+.+.+..+ +. .+++..|.++.+|+.++
T Consensus 253 ~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~ 326 (394)
T 4fs7_A 253 TDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSID 326 (394)
T ss_dssp SSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEEC
T ss_pred ccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEE
Confidence 45667777766443 5667788888999888876543 2346778899999999765 66 78888889999999999
Q ss_pred eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQF 231 (253)
Q Consensus 161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 231 (253)
+..+ ++.....+|.++.+|+.+.+..+ ++......|.++.+|+.+++..+- . .+..+|.++++|+.+
T Consensus 327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 9754 66455688999999999999877 765677889999999999997653 2 345678888888765
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.85 E-value=0.00014 Score=61.83 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=86.7
Q ss_pred hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCC
Q 025426 123 STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202 (253)
Q Consensus 123 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 202 (253)
.+|..+.+|+.+.+..+.. .+....|..+.+|+.+.+. +.++.....+|.++.+|+.+.+..+ ++......|.++.
T Consensus 259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 4566778888888876543 5667777888999999986 4455455578999999999999865 6656677899999
Q ss_pred CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238 (253)
Q Consensus 203 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 238 (253)
+|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 9999999755 5546678899999999999998754
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.63 E-value=1.9e-05 Score=60.40 Aligned_cols=64 Identities=11% Similarity=0.097 Sum_probs=31.5
Q ss_pred CCCCcceEeeecCcCccc----CCccccCCCCCCeeecccC---cCcc----cCChhhcCCCCCCEEeccCCCCc
Q 025426 176 NCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGAN---RLQG----EIPREFGNLTELEQFSLPTNNLQ 239 (253)
Q Consensus 176 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l~ 239 (253)
.-+.|++|+|++|.|.+. +-+.+..-+.|++|+|++| .+.+ .+.+.+..-+.|+.|+++.|.+.
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 334455555555555432 1222333345666666543 2222 13344555666777777766543
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.50 E-value=4.4e-05 Score=58.40 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=39.3
Q ss_pred hhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCc---Cccc
Q 025426 125 IFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYND---FSGA 193 (253)
Q Consensus 125 l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---l~~~ 193 (253)
+..-..|++|+|++|.+... +...+ ..-..|++|+|+.|.|+.. +...+..-+.|++|++++|. +...
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~ 144 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ 144 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence 33344455555555555411 11112 2334555555555555431 22334444556666665432 2211
Q ss_pred ----CCccccCCCCCCeeecccCc
Q 025426 194 ----VPREIGNLTKLKVLYIGANR 213 (253)
Q Consensus 194 ----~p~~l~~l~~L~~L~l~~n~ 213 (253)
+.+.+..-+.|+.|+++.|.
T Consensus 145 g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 145 VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhCCCcCeEeccCCC
Confidence 12233344556666666554
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.25 E-value=0.00064 Score=48.39 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=43.7
Q ss_pred cEEEeecCcCC-CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426 157 EFLSLSLNMFH-GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215 (253)
Q Consensus 157 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 215 (253)
..++.+++.++ ..+|..+. +++++|+|++|.|+...+..|..+++|++|+|.+|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 35564432 46899999999998666667788889999999999875
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.05 E-value=0.002 Score=45.80 Aligned_cols=55 Identities=20% Similarity=0.340 Sum_probs=28.1
Q ss_pred EEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCC
Q 025426 85 VLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141 (253)
Q Consensus 85 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l 141 (253)
.++-++++++ ..+|..+. .+|+.|+|++|.++..-+..|..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 24443332 2455666666666543334445555555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.04 E-value=20 Score=23.45 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=16.4
Q ss_pred ccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecc
Q 025426 172 STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210 (253)
Q Consensus 172 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~ 210 (253)
.+|.++.+|+.+.+..+ ++......|.++.+|+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 34444444444444433 222333444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=67.30 E-value=9.3 Score=25.13 Aligned_cols=47 Identities=17% Similarity=0.110 Sum_probs=37.3
Q ss_pred cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426 189 DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236 (253)
Q Consensus 189 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 236 (253)
.++.+....|.++.+|+.+.+-.+- +.....+|..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcCC
Confidence 4555566788999999999997653 4366788999999999998764
Done!