Query 025427
Match_columns 253
No_of_seqs 105 out of 284
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 05:41:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025427.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025427hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1464 COP9 signalosome, subu 100.0 9.9E-80 2.1E-84 554.7 19.8 236 1-238 56-291 (440)
2 KOG1463 26S proteasome regulat 100.0 7.9E-60 1.7E-64 433.0 20.8 226 4-240 42-272 (411)
3 COG5159 RPN6 26S proteasome re 100.0 6.2E-50 1.3E-54 362.6 20.1 223 6-239 41-268 (421)
4 PF10602 RPN7: 26S proteasome 98.0 0.0003 6.5E-09 60.4 14.7 126 97-231 41-169 (177)
5 PRK11788 tetratricopeptide rep 97.7 0.005 1.1E-07 56.8 18.0 183 7-208 104-312 (389)
6 TIGR02521 type_IV_pilW type IV 97.6 0.016 3.4E-07 47.7 17.8 174 4-207 25-198 (234)
7 PF09976 TPR_21: Tetratricopep 97.5 0.0037 7.9E-08 50.9 13.3 94 95-204 51-144 (145)
8 PRK11788 tetratricopeptide rep 97.4 0.026 5.7E-07 52.0 18.7 94 97-207 185-278 (389)
9 PF09976 TPR_21: Tetratricopep 97.3 0.024 5.1E-07 46.1 15.1 76 77-165 70-145 (145)
10 KOG1840 Kinesin light chain [C 97.1 0.019 4.1E-07 57.1 15.9 182 11-200 284-472 (508)
11 TIGR00990 3a0801s09 mitochondr 97.1 0.18 4E-06 50.4 22.9 94 96-207 335-428 (615)
12 TIGR02521 type_IV_pilW type IV 97.1 0.065 1.4E-06 44.0 16.5 161 10-201 65-226 (234)
13 PF14938 SNAP: Soluble NSF att 97.1 0.22 4.7E-06 45.2 21.3 181 11-201 36-219 (282)
14 TIGR02917 PEP_TPR_lipo putativ 97.1 0.14 3E-06 50.8 21.3 99 97-208 606-733 (899)
15 TIGR02917 PEP_TPR_lipo putativ 97.0 0.14 3.1E-06 50.8 20.8 92 96-206 673-764 (899)
16 TIGR02795 tol_pal_ybgF tol-pal 97.0 0.0085 1.8E-07 45.3 9.5 113 95-222 5-118 (119)
17 TIGR00990 3a0801s09 mitochondr 96.9 0.08 1.7E-06 53.0 18.4 33 12-45 333-365 (615)
18 TIGR03302 OM_YfiO outer membra 96.9 0.12 2.7E-06 44.5 17.1 177 5-237 28-223 (235)
19 PRK02603 photosystem I assembl 96.8 0.024 5.3E-07 47.3 11.7 129 96-236 39-171 (172)
20 cd00189 TPR Tetratricopeptide 96.7 0.016 3.5E-07 39.6 8.4 94 96-207 4-97 (100)
21 TIGR03302 OM_YfiO outer membra 96.7 0.2 4.3E-06 43.2 16.7 140 5-165 65-230 (235)
22 PF14938 SNAP: Soluble NSF att 96.5 0.59 1.3E-05 42.3 20.9 156 8-174 73-232 (282)
23 PF13525 YfiO: Outer membrane 96.5 0.48 1E-05 40.9 18.2 171 6-232 1-193 (203)
24 CHL00033 ycf3 photosystem I as 96.4 0.064 1.4E-06 44.4 11.2 119 96-223 39-161 (168)
25 COG2956 Predicted N-acetylgluc 96.3 0.48 1E-05 45.0 17.7 167 5-203 136-307 (389)
26 TIGR00540 hemY_coli hemY prote 96.3 0.19 4.1E-06 47.9 15.3 99 94-207 265-366 (409)
27 KOG1840 Kinesin light chain [C 96.2 0.31 6.7E-06 48.6 16.6 161 75-241 181-349 (508)
28 PRK10747 putative protoheme IX 96.1 0.22 4.7E-06 47.4 14.9 107 95-231 266-373 (398)
29 PRK10866 outer membrane biogen 95.7 1.3 2.9E-05 39.6 17.5 149 4-162 63-236 (243)
30 PRK10370 formate-dependent nit 95.7 0.99 2.2E-05 39.0 16.0 136 73-232 57-196 (198)
31 PF13424 TPR_12: Tetratricopep 95.6 0.077 1.7E-06 38.1 7.4 68 96-168 9-76 (78)
32 PRK04841 transcriptional regul 95.4 2.6 5.7E-05 43.6 20.6 190 9-209 451-643 (903)
33 PLN03218 maturation of RBCL 1; 95.3 3 6.5E-05 45.3 21.1 26 12-37 509-534 (1060)
34 cd00189 TPR Tetratricopeptide 95.2 0.59 1.3E-05 31.6 10.6 29 12-40 2-30 (100)
35 PF13432 TPR_16: Tetratricopep 95.1 0.12 2.6E-06 35.8 6.9 60 97-168 2-61 (65)
36 PRK10049 pgaA outer membrane p 95.0 1.6 3.5E-05 45.2 17.3 110 91-219 358-468 (765)
37 PRK11447 cellulose synthase su 94.9 1.1 2.4E-05 48.5 16.5 60 147-206 680-739 (1157)
38 PF13424 TPR_12: Tetratricopep 94.7 0.16 3.4E-06 36.5 6.8 71 137-207 4-75 (78)
39 PLN03218 maturation of RBCL 1; 94.5 3 6.6E-05 45.2 18.6 92 97-205 654-746 (1060)
40 cd05804 StaR_like StaR_like; a 94.5 2.4 5.3E-05 38.5 15.6 74 94-170 266-339 (355)
41 KOG2908 26S proteasome regulat 94.4 1.1 2.3E-05 42.9 12.9 147 8-166 30-182 (380)
42 PRK11447 cellulose synthase su 94.3 2.7 5.8E-05 45.6 17.6 60 98-169 275-334 (1157)
43 COG2976 Uncharacterized protei 94.2 0.99 2.2E-05 40.0 11.7 66 90-168 124-189 (207)
44 PF13429 TPR_15: Tetratricopep 94.1 0.51 1.1E-05 42.1 10.2 91 97-206 151-242 (280)
45 PF13176 TPR_7: Tetratricopept 94.1 0.14 3E-06 32.2 4.6 29 12-40 1-29 (36)
46 TIGR00540 hemY_coli hemY prote 94.0 2 4.3E-05 41.0 14.5 143 10-173 263-405 (409)
47 PF13525 YfiO: Outer membrane 93.9 3.8 8.3E-05 35.3 16.2 142 4-155 36-195 (203)
48 PRK14574 hmsH outer membrane p 93.8 3.6 7.8E-05 43.5 17.0 162 14-208 38-199 (822)
49 TIGR02552 LcrH_SycD type III s 93.7 0.5 1.1E-05 36.9 8.3 96 95-208 20-115 (135)
50 PF12895 Apc3: Anaphase-promot 93.6 0.99 2.1E-05 32.9 9.2 55 97-164 30-84 (84)
51 PRK11189 lipoprotein NlpI; Pro 93.6 5.7 0.00012 36.2 16.5 130 8-165 62-192 (296)
52 PF03704 BTAD: Bacterial trans 93.5 3.2 6.9E-05 33.2 16.0 82 89-182 59-144 (146)
53 PLN03088 SGT1, suppressor of 93.3 1.9 4.2E-05 40.6 12.9 28 13-40 5-32 (356)
54 PRK15174 Vi polysaccharide exp 93.3 9.4 0.0002 39.0 18.7 93 97-207 217-313 (656)
55 PF12895 Apc3: Anaphase-promot 93.3 0.42 9.2E-06 34.9 6.8 84 104-204 1-84 (84)
56 cd05804 StaR_like StaR_like; a 93.3 4.2 9.2E-05 36.9 14.8 161 17-205 50-213 (355)
57 PRK15174 Vi polysaccharide exp 93.2 9.4 0.0002 39.0 18.6 92 97-206 251-346 (656)
58 PRK15179 Vi polysaccharide bio 93.1 5.1 0.00011 41.6 16.5 174 11-225 87-263 (694)
59 COG3063 PilF Tfp pilus assembl 92.8 0.81 1.8E-05 41.5 8.9 119 90-229 33-151 (250)
60 KOG1497 COP9 signalosome, subu 92.7 9.6 0.00021 36.4 17.2 157 67-231 76-236 (399)
61 COG2956 Predicted N-acetylgluc 92.7 9.4 0.0002 36.5 16.1 169 7-200 66-236 (389)
62 TIGR02795 tol_pal_ybgF tol-pal 92.6 1.9 4.2E-05 32.1 9.8 67 92-167 39-105 (119)
63 KOG2002 TPR-containing nuclear 92.2 8 0.00017 41.4 16.5 98 97-208 275-372 (1018)
64 KOG2300 Uncharacterized conser 92.0 7.1 0.00015 39.2 15.1 153 14-178 327-485 (629)
65 PLN03088 SGT1, suppressor of 91.9 1.6 3.5E-05 41.1 10.4 92 97-206 7-98 (356)
66 PRK04841 transcriptional regul 91.8 18 0.00039 37.5 19.9 194 11-213 532-766 (903)
67 TIGR02552 LcrH_SycD type III s 91.4 5.4 0.00012 30.9 11.4 98 11-123 18-116 (135)
68 PF14559 TPR_19: Tetratricopep 91.3 0.65 1.4E-05 32.1 5.4 56 102-169 1-56 (68)
69 PF13429 TPR_15: Tetratricopep 91.2 5.8 0.00013 35.2 12.8 165 11-207 111-277 (280)
70 PF13414 TPR_11: TPR repeat; P 91.1 1.7 3.7E-05 30.1 7.5 59 97-167 8-67 (69)
71 PLN03081 pentatricopeptide (PP 91.1 13 0.00029 37.8 16.7 91 97-203 295-385 (697)
72 KOG2300 Uncharacterized conser 91.1 18 0.0004 36.4 16.7 168 47-229 4-177 (629)
73 KOG1498 26S proteasome regulat 91.0 10 0.00022 36.9 14.7 139 9-161 51-194 (439)
74 PLN03077 Protein ECB2; Provisi 91.0 14 0.0003 38.6 17.0 25 97-121 359-383 (857)
75 PRK10803 tol-pal system protei 90.5 4.5 9.7E-05 36.9 11.5 109 100-223 151-260 (263)
76 KOG2003 TPR repeat-containing 90.3 4.9 0.00011 40.2 12.0 204 9-232 308-557 (840)
77 PF13174 TPR_6: Tetratricopept 90.3 0.54 1.2E-05 27.8 3.7 29 12-40 2-30 (33)
78 PLN03081 pentatricopeptide (PP 90.1 7.8 0.00017 39.4 14.1 22 15-36 295-316 (697)
79 KOG2688 Transcription-associat 90.0 7.6 0.00016 37.7 12.9 127 106-232 130-259 (394)
80 PF08631 SPO22: Meiosis protei 89.9 15 0.00032 33.3 18.1 168 21-207 4-186 (278)
81 PF13371 TPR_9: Tetratricopept 89.8 1.8 3.9E-05 30.2 6.6 60 98-169 1-60 (73)
82 PRK10866 outer membrane biogen 89.5 11 0.00023 33.8 12.9 135 97-242 37-187 (243)
83 KOG2003 TPR repeat-containing 89.4 15 0.00033 36.8 14.6 89 102-209 534-623 (840)
84 PRK09782 bacteriophage N4 rece 89.3 22 0.00049 38.4 17.2 93 96-206 613-705 (987)
85 PRK12370 invasion protein regu 89.2 25 0.00054 35.0 16.8 94 96-206 376-469 (553)
86 PRK15359 type III secretion sy 88.8 4.6 9.9E-05 32.9 9.3 91 97-206 29-120 (144)
87 PF07719 TPR_2: Tetratricopept 88.3 1.3 2.9E-05 26.2 4.5 30 11-40 2-31 (34)
88 KOG0543 FKBP-type peptidyl-pro 88.0 10 0.00022 36.8 12.3 138 14-168 212-356 (397)
89 PF10345 Cohesin_load: Cohesin 87.7 34 0.00073 34.6 19.8 141 68-215 30-176 (608)
90 TIGR03504 FimV_Cterm FimV C-te 87.5 1.2 2.5E-05 30.0 4.0 27 95-121 2-28 (44)
91 PRK14574 hmsH outer membrane p 87.4 31 0.00068 36.6 16.5 173 11-201 293-473 (822)
92 PF13181 TPR_8: Tetratricopept 87.2 1.9 4.1E-05 25.8 4.7 30 11-40 2-31 (34)
93 KOG2002 TPR-containing nuclear 87.2 25 0.00054 37.9 15.4 168 11-210 308-484 (1018)
94 PRK09782 bacteriophage N4 rece 86.9 26 0.00057 37.9 15.9 94 95-206 646-739 (987)
95 COG5010 TadD Flp pilus assembl 86.5 8.4 0.00018 35.3 10.3 104 98-221 106-209 (257)
96 PLN03077 Protein ECB2; Provisi 86.4 37 0.00081 35.4 16.5 88 97-200 559-647 (857)
97 PF13414 TPR_11: TPR repeat; P 86.2 2.7 5.9E-05 29.0 5.7 62 139-206 4-66 (69)
98 COG5600 Transcription-associat 85.5 4.5 9.7E-05 39.2 8.3 130 104-234 142-276 (413)
99 PF04190 DUF410: Protein of un 85.3 7.8 0.00017 35.1 9.6 96 11-111 11-109 (260)
100 PF00515 TPR_1: Tetratricopept 85.1 2.7 5.8E-05 25.2 4.6 30 11-40 2-31 (34)
101 KOG2376 Signal recognition par 85.0 12 0.00025 38.3 11.3 134 16-166 116-252 (652)
102 KOG4626 O-linked N-acetylgluco 85.0 23 0.00049 36.9 13.4 31 15-46 291-321 (966)
103 PF13374 TPR_10: Tetratricopep 84.8 1.9 4.1E-05 26.5 3.9 34 95-128 5-38 (42)
104 PRK10370 formate-dependent nit 84.7 24 0.00053 30.3 12.0 102 12-124 75-176 (198)
105 PF13374 TPR_10: Tetratricopep 84.3 2.7 5.8E-05 25.8 4.4 30 11-40 3-32 (42)
106 PF04733 Coatomer_E: Coatomer 83.2 15 0.00033 33.8 10.7 118 97-238 136-256 (290)
107 PRK10049 pgaA outer membrane p 83.2 62 0.0013 33.6 20.1 107 95-208 313-423 (765)
108 KOG4626 O-linked N-acetylgluco 83.2 28 0.00062 36.2 13.1 66 137-208 455-523 (966)
109 PF12569 NARP1: NMDA receptor- 82.9 14 0.00031 37.0 11.1 108 90-211 194-338 (517)
110 TIGR03504 FimV_Cterm FimV C-te 82.8 2.9 6.3E-05 28.0 4.3 40 15-55 4-43 (44)
111 CHL00033 ycf3 photosystem I as 82.7 17 0.00036 29.8 9.9 90 107-209 14-103 (168)
112 PRK02603 photosystem I assembl 82.7 24 0.00053 29.0 10.9 67 96-167 76-142 (172)
113 KOG0547 Translocase of outer m 82.5 59 0.0013 32.9 17.2 197 11-234 116-375 (606)
114 COG4783 Putative Zn-dependent 82.5 54 0.0012 32.7 14.5 76 96-206 378-453 (484)
115 COG4105 ComL DNA uptake lipopr 82.4 40 0.00087 30.9 16.1 142 4-156 65-222 (254)
116 KOG2376 Signal recognition par 81.0 44 0.00096 34.3 13.6 109 10-123 376-489 (652)
117 COG3071 HemY Uncharacterized e 81.0 52 0.0011 32.1 13.6 122 15-166 268-389 (400)
118 KOG0495 HAT repeat protein [RN 81.0 46 0.001 34.9 13.7 100 73-188 632-736 (913)
119 PRK14720 transcript cleavage f 80.5 89 0.0019 33.7 16.6 138 7-167 28-178 (906)
120 KOG2076 RNA polymerase III tra 78.0 66 0.0014 34.4 14.2 104 138-244 626-730 (895)
121 PRK11189 lipoprotein NlpI; Pro 77.8 15 0.00032 33.4 8.7 92 97-206 69-160 (296)
122 PRK12370 invasion protein regu 77.7 79 0.0017 31.5 17.0 130 12-166 340-469 (553)
123 PRK15359 type III secretion sy 77.5 36 0.00078 27.5 10.8 97 13-123 27-123 (144)
124 COG5187 RPN7 26S proteasome re 76.5 42 0.00091 32.0 11.1 135 92-235 115-249 (412)
125 PF09295 ChAPs: ChAPs (Chs5p-A 75.7 59 0.0013 31.6 12.5 116 16-162 175-292 (395)
126 PRK14562 haloacid dehalogenase 75.4 56 0.0012 28.7 11.4 54 171-224 109-179 (204)
127 PF13174 TPR_6: Tetratricopept 75.1 5.5 0.00012 23.2 3.5 28 96-123 4-31 (33)
128 KOG0548 Molecular co-chaperone 74.7 1E+02 0.0022 31.2 15.5 153 11-206 299-454 (539)
129 PRK15363 pathogenicity island 73.7 34 0.00075 29.1 9.1 92 97-208 40-133 (157)
130 PF13428 TPR_14: Tetratricopep 73.2 7.9 0.00017 24.9 4.1 31 12-43 3-33 (44)
131 PRK15179 Vi polysaccharide bio 72.4 1.3E+02 0.0028 31.4 15.5 98 94-209 122-219 (694)
132 KOG4234 TPR repeat-containing 72.0 78 0.0017 28.7 14.0 100 11-122 96-198 (271)
133 KOG1126 DNA-binding cell divis 70.0 53 0.0011 33.9 10.9 131 9-166 488-619 (638)
134 PRK10803 tol-pal system protei 69.2 60 0.0013 29.5 10.4 62 96-166 184-245 (263)
135 PF13181 TPR_8: Tetratricopept 68.7 15 0.00032 21.7 4.4 31 139-169 2-32 (34)
136 PF07719 TPR_2: Tetratricopept 68.3 9.9 0.00022 22.3 3.6 27 96-122 5-31 (34)
137 KOG0687 26S proteasome regulat 67.6 1.2E+02 0.0026 29.2 14.6 137 90-235 101-238 (393)
138 PF04733 Coatomer_E: Coatomer 67.5 15 0.00032 33.8 6.1 109 96-231 106-215 (290)
139 KOG2908 26S proteasome regulat 67.3 1.2E+02 0.0027 29.2 12.8 123 104-235 87-216 (380)
140 PF13176 TPR_7: Tetratricopept 67.2 8.3 0.00018 23.9 3.1 25 97-121 4-28 (36)
141 KOG1173 Anaphase-promoting com 66.7 34 0.00073 34.9 8.7 91 74-176 436-528 (611)
142 PF01535 PPR: PPR repeat; Int 66.0 10 0.00022 21.6 3.2 26 13-38 3-28 (31)
143 PF14559 TPR_19: Tetratricopep 65.2 13 0.00028 25.3 4.1 28 95-122 28-55 (68)
144 PF11817 Foie-gras_1: Foie gra 65.0 66 0.0014 28.6 9.7 82 69-156 152-236 (247)
145 KOG2076 RNA polymerase III tra 65.0 1.8E+02 0.0039 31.3 13.8 109 90-203 277-404 (895)
146 PF14853 Fis1_TPR_C: Fis1 C-te 64.9 34 0.00074 23.6 6.1 43 12-58 3-45 (53)
147 PF13428 TPR_14: Tetratricopep 64.7 14 0.0003 23.7 3.9 29 95-123 4-32 (44)
148 PF13371 TPR_9: Tetratricopept 64.5 14 0.00031 25.5 4.3 55 146-206 3-57 (73)
149 COG4235 Cytochrome c biogenesi 64.0 1.3E+02 0.0028 28.2 12.3 109 14-144 160-273 (287)
150 PF10602 RPN7: 26S proteasome 63.7 92 0.002 26.4 13.2 67 96-168 77-143 (177)
151 smart00028 TPR Tetratricopepti 62.9 17 0.00037 19.2 3.7 29 11-39 2-30 (34)
152 PF13432 TPR_16: Tetratricopep 61.5 19 0.00042 24.4 4.5 30 10-39 31-60 (65)
153 PF12862 Apc5: Anaphase-promot 61.3 49 0.0011 24.9 7.0 23 103-125 9-31 (94)
154 TIGR00756 PPR pentatricopeptid 60.4 20 0.00043 20.6 3.8 26 13-38 3-28 (35)
155 PF03704 BTAD: Bacterial trans 59.0 47 0.001 26.3 7.0 32 9-40 95-126 (146)
156 PF13812 PPR_3: Pentatricopept 57.9 27 0.00059 20.3 4.2 27 12-38 3-29 (34)
157 KOG0545 Aryl-hydrocarbon recep 57.9 1.6E+02 0.0036 27.5 12.6 125 12-148 180-313 (329)
158 PF04781 DUF627: Protein of un 57.5 41 0.00089 27.1 6.2 58 97-163 1-61 (111)
159 COG1747 Uncharacterized N-term 57.2 2.4E+02 0.0051 29.1 13.5 185 11-200 100-333 (711)
160 COG2976 Uncharacterized protei 57.2 52 0.0011 29.3 7.3 100 94-209 91-190 (207)
161 PF12862 Apc5: Anaphase-promot 56.6 82 0.0018 23.6 8.9 30 96-125 45-74 (94)
162 PF09295 ChAPs: ChAPs (Chs5p-A 56.5 1.5E+02 0.0032 28.8 11.0 110 97-232 174-283 (395)
163 PF07721 TPR_4: Tetratricopept 56.2 18 0.00039 20.8 3.0 23 12-34 3-25 (26)
164 PF14689 SPOB_a: Sensor_kinase 56.1 51 0.0011 23.3 5.9 50 76-125 7-56 (62)
165 KOG1941 Acetylcholine receptor 55.3 2.2E+02 0.0048 28.1 15.1 183 13-210 9-194 (518)
166 KOG2114 Vacuolar assembly/sort 55.0 2.2E+02 0.0049 30.6 12.4 30 12-41 370-399 (933)
167 PF04190 DUF410: Protein of un 54.6 48 0.001 30.0 6.9 97 99-202 17-114 (260)
168 PF10366 Vps39_1: Vacuolar sor 54.3 17 0.00036 28.7 3.5 65 13-84 42-106 (108)
169 KOG4340 Uncharacterized conser 53.3 1.4E+02 0.003 28.8 9.8 169 19-223 19-201 (459)
170 PF13512 TPR_18: Tetratricopep 53.2 90 0.0019 26.1 7.8 38 5-43 42-79 (142)
171 KOG1155 Anaphase-promoting com 52.2 2.7E+02 0.0058 28.2 11.9 98 14-121 436-536 (559)
172 PF12854 PPR_1: PPR repeat 51.9 25 0.00055 21.6 3.3 25 12-36 9-33 (34)
173 PRK10747 putative protoheme IX 51.7 2.2E+02 0.0047 27.0 13.9 85 103-206 305-389 (398)
174 PF13041 PPR_2: PPR repeat fam 50.5 35 0.00075 22.2 4.1 28 12-39 5-32 (50)
175 KOG0548 Molecular co-chaperone 50.5 2.9E+02 0.0063 28.1 13.5 155 10-206 224-386 (539)
176 KOG3060 Uncharacterized conser 50.0 2.2E+02 0.0048 26.6 13.8 63 97-169 159-222 (289)
177 PF03745 DUF309: Domain of unk 49.7 31 0.00068 24.5 4.0 57 97-199 4-60 (62)
178 PF13512 TPR_18: Tetratricopep 49.5 98 0.0021 25.9 7.4 64 97-169 15-78 (142)
179 PF14357 DUF4404: Domain of un 48.8 73 0.0016 24.1 6.1 72 111-183 2-76 (85)
180 CHL00024 psbI photosystem II p 48.2 12 0.00027 24.1 1.4 11 243-253 13-23 (36)
181 PF08318 COG4: COG4 transport 46.6 2.5E+02 0.0054 26.2 12.2 152 12-188 27-196 (331)
182 COG2909 MalT ATP-dependent tra 45.5 1.5E+02 0.0033 31.8 9.7 96 100-200 423-519 (894)
183 PF10345 Cohesin_load: Cohesin 45.4 3.4E+02 0.0074 27.4 19.2 134 92-232 100-240 (608)
184 KOG4555 TPR repeat-containing 44.4 2E+02 0.0043 24.5 11.1 116 97-230 48-167 (175)
185 PF04053 Coatomer_WDAD: Coatom 43.8 1.2E+02 0.0026 29.9 8.2 146 19-197 270-434 (443)
186 PF10300 DUF3808: Protein of u 43.1 1.1E+02 0.0024 30.1 7.9 88 105-206 246-333 (468)
187 KOG0686 COP9 signalosome, subu 42.7 3.5E+02 0.0077 26.9 15.3 122 97-229 155-281 (466)
188 KOG4648 Uncharacterized conser 42.3 1.9E+02 0.0042 28.3 9.1 91 13-121 100-194 (536)
189 KOG2168 Cullins [Cell cycle co 42.2 3.2E+02 0.007 29.3 11.4 92 15-121 640-736 (835)
190 KOG1129 TPR repeat-containing 41.1 3.5E+02 0.0077 26.4 11.5 159 14-206 227-386 (478)
191 PF14561 TPR_20: Tetratricopep 40.2 67 0.0014 24.4 4.7 47 93-142 23-69 (90)
192 KOG1538 Uncharacterized conser 39.9 4.9E+02 0.011 27.7 14.3 140 98-248 709-868 (1081)
193 PF02532 PsbI: Photosystem II 39.6 8.9 0.00019 24.7 -0.2 11 243-253 13-23 (36)
194 PF09670 Cas_Cas02710: CRISPR- 39.4 3.1E+02 0.0068 26.2 10.3 116 90-232 129-248 (379)
195 PF04910 Tcf25: Transcriptiona 39.4 2.7E+02 0.0058 26.5 9.7 121 7-151 37-158 (360)
196 COG5071 RPN5 26S proteasome re 39.3 3.6E+02 0.0078 26.0 16.4 194 9-216 51-250 (439)
197 PF13431 TPR_17: Tetratricopep 38.6 32 0.00069 21.2 2.3 23 8-30 11-33 (34)
198 KOG3616 Selective LIM binding 38.1 5.6E+02 0.012 27.9 16.0 183 10-202 477-685 (1636)
199 COG3947 Response regulator con 37.3 1.3E+02 0.0028 28.7 6.9 38 84-121 266-308 (361)
200 KOG3616 Selective LIM binding 37.2 2.5E+02 0.0053 30.4 9.4 172 19-204 715-908 (1636)
201 KOG1497 COP9 signalosome, subu 37.1 17 0.00037 34.8 1.2 67 134-200 295-375 (399)
202 PF11817 Foie-gras_1: Foie gra 36.5 3.1E+02 0.0066 24.3 14.7 85 153-237 153-238 (247)
203 KOG0495 HAT repeat protein [RN 35.8 5.7E+02 0.012 27.2 11.9 102 85-213 750-852 (913)
204 KOG0553 TPR repeat-containing 35.4 3.3E+02 0.0072 25.7 9.3 87 11-114 82-171 (304)
205 PF04100 Vps53_N: Vps53-like, 34.8 4.2E+02 0.0091 25.5 16.9 54 92-168 117-170 (383)
206 KOG2047 mRNA splicing factor [ 34.6 4E+02 0.0087 28.2 10.4 201 12-231 171-399 (835)
207 PF00244 14-3-3: 14-3-3 protei 34.5 3.3E+02 0.0072 24.2 19.3 60 154-213 142-208 (236)
208 PF08771 Rapamycin_bind: Rapam 34.3 1.3E+02 0.0029 23.3 5.7 30 99-128 21-50 (100)
209 PF09455 Cas_DxTHG: CRISPR-ass 33.3 2E+02 0.0044 26.7 7.8 46 72-117 271-316 (384)
210 cd07909 YciF YciF bacterial st 33.3 1.2E+02 0.0026 25.4 5.6 60 153-212 48-109 (147)
211 PF01997 Translin: Translin fa 33.1 24 0.00052 30.6 1.4 54 171-224 113-185 (200)
212 PLN03098 LPA1 LOW PSII ACCUMUL 33.1 1.4E+02 0.003 29.8 6.7 69 93-170 76-144 (453)
213 PF07079 DUF1347: Protein of u 32.8 3.8E+02 0.0083 27.1 9.6 97 100-212 14-113 (549)
214 KOG1126 DNA-binding cell divis 32.8 5.9E+02 0.013 26.5 14.8 168 12-201 355-580 (638)
215 KOG3617 WD40 and TPR repeat-co 32.7 7.1E+02 0.015 27.4 15.0 148 13-166 1148-1358(1416)
216 PF04124 Dor1: Dor1-like famil 32.7 2.1E+02 0.0046 26.7 7.8 43 14-60 110-152 (338)
217 PF09184 PPP4R2: PPP4R2; Inte 32.3 3.1E+02 0.0067 25.4 8.7 28 97-124 102-130 (288)
218 KOG2063 Vacuolar assembly/sort 32.1 91 0.002 33.5 5.7 147 12-171 506-672 (877)
219 COG4783 Putative Zn-dependent 31.9 2.7E+02 0.0058 28.0 8.5 79 97-187 311-390 (484)
220 PF14689 SPOB_a: Sensor_kinase 31.7 1.6E+02 0.0035 20.6 5.3 29 12-40 25-53 (62)
221 COG3071 HemY Uncharacterized e 31.5 5.1E+02 0.011 25.4 16.4 107 97-225 268-388 (400)
222 PF12569 NARP1: NMDA receptor- 30.9 5.6E+02 0.012 25.8 20.7 123 97-227 148-276 (517)
223 KOG1585 Protein required for f 30.7 4.6E+02 0.0099 24.6 13.6 141 11-167 72-219 (308)
224 cd00126 PAH Pancreatic Hormone 30.5 60 0.0013 21.0 2.6 22 25-47 13-34 (36)
225 COG3063 PilF Tfp pilus assembl 30.3 4.3E+02 0.0094 24.2 9.4 50 94-155 175-224 (250)
226 KOG1125 TPR repeat-containing 30.2 6.3E+02 0.014 26.0 13.4 119 94-237 432-562 (579)
227 PF04048 Sec8_exocyst: Sec8 ex 29.6 2.2E+02 0.0047 23.3 6.5 26 97-122 108-133 (142)
228 PF04097 Nic96: Nup93/Nic96; 29.3 4.5E+02 0.0098 26.8 10.0 106 7-119 411-532 (613)
229 COG3629 DnrI DNA-binding trans 29.2 1E+02 0.0023 28.6 5.0 43 7-50 150-192 (280)
230 KOG1070 rRNA processing protei 29.2 9.5E+02 0.021 27.8 12.7 60 97-166 1569-1628(1710)
231 KOG0624 dsRNA-activated protei 29.0 5.7E+02 0.012 25.2 13.9 76 97-184 160-250 (504)
232 smart00309 PAH Pancreatic horm 28.9 66 0.0014 20.8 2.5 22 25-47 13-34 (36)
233 PF00159 Hormone_3: Pancreatic 28.9 72 0.0016 20.6 2.7 22 25-47 13-34 (36)
234 KOG2047 mRNA splicing factor [ 28.7 7.3E+02 0.016 26.3 11.8 98 100-210 433-536 (835)
235 KOG1070 rRNA processing protei 28.7 9.7E+02 0.021 27.8 14.5 62 97-170 1605-1666(1710)
236 PF04518 Effector_1: Effector 28.6 5.6E+02 0.012 25.0 10.9 157 27-212 141-313 (379)
237 KOG3081 Vesicle coat complex C 27.0 5.4E+02 0.012 24.2 14.1 121 96-238 112-262 (299)
238 PF10366 Vps39_1: Vacuolar sor 26.7 71 0.0015 25.1 3.0 25 97-121 44-68 (108)
239 PRK02655 psbI photosystem II r 26.5 44 0.00095 21.8 1.4 10 244-253 14-23 (38)
240 KOG1585 Protein required for f 25.5 1.1E+02 0.0025 28.4 4.4 93 146-240 39-133 (308)
241 PF14561 TPR_20: Tetratricopep 25.1 2.6E+02 0.0057 21.0 5.8 50 11-61 23-72 (90)
242 COG1516 FliS Flagellin-specifi 25.0 4E+02 0.0087 22.1 9.6 67 67-150 20-93 (132)
243 PF08771 Rapamycin_bind: Rapam 24.8 2.3E+02 0.005 22.0 5.5 33 10-43 14-46 (100)
244 TIGR02878 spore_ypjB sporulati 24.5 2.5E+02 0.0054 25.5 6.3 69 19-103 14-89 (233)
245 PF11207 DUF2989: Protein of u 24.3 5.1E+02 0.011 23.0 10.7 46 149-198 151-198 (203)
246 PF02317 Octopine_DH: NAD/NADP 24.3 76 0.0016 26.2 2.9 48 159-206 6-57 (152)
247 KOG1464 COP9 signalosome, subu 24.2 1.8E+02 0.0038 27.7 5.4 58 141-204 68-130 (440)
248 PLN03098 LPA1 LOW PSII ACCUMUL 23.6 7.5E+02 0.016 24.7 13.3 133 10-206 75-208 (453)
249 KOG1156 N-terminal acetyltrans 23.5 2.5E+02 0.0053 29.4 6.7 121 95-227 374-534 (700)
250 cd02678 MIT_VPS4 MIT: domain c 23.3 1.4E+02 0.0031 21.6 3.9 26 21-47 17-42 (75)
251 KOG2115 Vacuolar sorting prote 23.3 8.7E+02 0.019 26.5 10.8 32 93-124 336-367 (951)
252 PF06957 COPI_C: Coatomer (COP 23.2 6.5E+02 0.014 24.8 9.4 198 6-227 116-347 (422)
253 cd07353 harmonin_N N-terminal 23.0 97 0.0021 23.1 2.8 29 195-223 19-48 (79)
254 PRK14720 transcript cleavage f 23.0 1E+03 0.022 26.0 15.3 44 12-61 118-161 (906)
255 KOG1156 N-terminal acetyltrans 22.9 9.1E+02 0.02 25.4 17.7 209 8-229 217-455 (700)
256 COG5159 RPN6 26S proteasome re 22.6 3.4E+02 0.0073 26.1 7.0 88 94-186 5-93 (421)
257 PF06160 EzrA: Septation ring 21.9 8.3E+02 0.018 24.6 12.6 48 77-124 497-548 (560)
258 TIGR00208 fliS flagellar biosy 21.8 4.2E+02 0.0091 21.2 7.8 61 67-144 20-87 (124)
259 KOG0543 FKBP-type peptidyl-pro 21.7 5.9E+02 0.013 25.0 8.6 104 98-207 214-320 (397)
260 PRK05685 fliS flagellar protei 21.0 4.5E+02 0.0097 21.2 8.1 62 67-145 24-92 (132)
261 cd02683 MIT_1 MIT: domain cont 20.9 1.6E+02 0.0035 21.7 3.7 21 20-40 16-36 (77)
262 KOG2758 Translation initiation 20.7 4.5E+02 0.0096 25.6 7.4 47 9-56 128-174 (432)
263 cd02680 MIT_calpain7_2 MIT: do 20.2 1.7E+02 0.0037 21.7 3.8 19 22-40 18-36 (75)
No 1
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=9.9e-80 Score=554.72 Aligned_cols=236 Identities=67% Similarity=1.096 Sum_probs=231.8
Q ss_pred CCccchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 025427 1 MEPEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLK 80 (253)
Q Consensus 1 ~~~~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e 80 (253)
+|+|+|+|+||||||++|++++.+++++|++.|+++++|++|+|||||++|+||+|+|++|.+ .++++|+.||++|++
T Consensus 56 lEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS--~~m~LLQ~FYeTTL~ 133 (440)
T KOG1464|consen 56 LEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS--KNMDLLQEFYETTLD 133 (440)
T ss_pred cccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh--hhhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999955 468899999999999
Q ss_pred HHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 025427 81 ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 160 (253)
Q Consensus 81 ~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~ 160 (253)
+++.|+|+|||||++.||+++|+|.++|.+..+++++||++|+..+|+||+.|+++|+||||+|||||+.++|++|+|++
T Consensus 134 ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~l 213 (440)
T KOG1464|consen 134 ALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKAL 213 (440)
T ss_pred HHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCchHH
Q 025427 161 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIYFLY 238 (253)
Q Consensus 161 y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id~~~ 238 (253)
|.+|+.+.+|||||+|||+|||||||||+.||.|++|+++|||||+||||+|+|||++||||+|||+||+.|+||||.
T Consensus 214 YeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFD 291 (440)
T KOG1464|consen 214 YEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFD 291 (440)
T ss_pred HHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999985
No 2
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-60 Score=433.00 Aligned_cols=226 Identities=20% Similarity=0.331 Sum_probs=216.3
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
+..+-++.++-+++++|.+.|+++++.+++++++||+ +.|+|++++|+||+++|.+..+++.. ..++++|.+||+
T Consensus 42 ~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~-~~v~KakaaKlvR~Lvd~~~~~~~~~----~~~i~l~~~cIe 116 (411)
T KOG1463|consen 42 ARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFL-SSVSKAKAAKLVRSLVDMFLKIDDGT----GDQIELCTECIE 116 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHccCCCCc----chHHHHHHHHHH
Confidence 3456889999999999999999999999999999999 99999999999999999999887743 378899999999
Q ss_pred Hhhhh-hhHHHHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 025427 84 EAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 160 (253)
Q Consensus 84 ~a~~e-rl~lk~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~ 160 (253)
||+.| |+|||++| ||+.+|+|.++|++|+.++++|.+++|+. || |.+|+||+++||+.||+++|+||+|++
T Consensus 117 WA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl---DD---K~lLvev~llESK~y~~l~Nl~Kakas 190 (411)
T KOG1463|consen 117 WAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL---DD---KILLVEVHLLESKAYHALRNLPKAKAS 190 (411)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc---cc---ccceeeehhhhhHHHHHHhcchhHHHH
Confidence 99976 69999999 99999999999999999999999999999 99 999999999999999999999999999
Q ss_pred HHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHHHHHHHHHHhccCCCchHH
Q 025427 161 YQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYGFYLHLLFLISIYFLY 238 (253)
Q Consensus 161 y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~LKYlvL~~iL~~s~id~~~ 238 (253)
+|+|||.+||||| |.+||.||++||++|+.|+||+|||||||||||||+..|+ ++|+++||||+||+||.|.+.||-+
T Consensus 191 LTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~ 270 (411)
T KOG1463|consen 191 LTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAA 270 (411)
T ss_pred HHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999 9999999999999999999999999999999999999988 6999999999999999999999887
Q ss_pred HH
Q 025427 239 LY 240 (253)
Q Consensus 239 ~~ 240 (253)
+-
T Consensus 271 ll 272 (411)
T KOG1463|consen 271 LL 272 (411)
T ss_pred HH
Confidence 64
No 3
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-50 Score=362.55 Aligned_cols=223 Identities=19% Similarity=0.269 Sum_probs=212.3
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 85 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a 85 (253)
-+.++.++-.+.++|+..|++.++.+.+++.+++| .+++|++++|+||+++|.++.++++ ++.++.+|..+|+||
T Consensus 41 ~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m-~~ftk~k~~KiirtLiekf~~~~ds----l~dqi~v~~~~iewA 115 (421)
T COG5159 41 LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAM-EDFTKPKITKIIRTLIEKFPYSSDS----LEDQIKVLTALIEWA 115 (421)
T ss_pred hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHH-HHhcchhHHHHHHHHHHhcCCCCcc----HHHHHHHHHHHHHHH
Confidence 45788999999999999999999999999999999 9999999999999999999987663 678899999999999
Q ss_pred hhh-hhHHHHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 86 KNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 86 ~~e-rl~lk~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
..| |.|||+.| |++.++++.|+|.+|+.+|+.|..++|+. || |..|++||++|+++||+++|++|.|+++|
T Consensus 116 ~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~---DD---K~~Li~vhllESKvyh~irnv~KskaSLT 189 (421)
T COG5159 116 DREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY---DD---KINLITVHLLESKVYHEIRNVSKSKASLT 189 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh---cC---ccceeehhhhhHHHHHHHHhhhhhhhHHH
Confidence 987 59999999 99999999999999999999999999999 89 99999999999999999999999999999
Q ss_pred HHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cChhhHHHHHHHHHHHHhccCCCchHHH
Q 025427 163 KALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYGFYLHLLFLISIYFLYL 239 (253)
Q Consensus 163 ~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~~~a~~~LKYlvL~~iL~~s~id~~~~ 239 (253)
+||+.+|++|| |.+||++|.++|++||+++||+||+||||||||||... .+.+|+++||||+|++||.|+-.++-++
T Consensus 190 aArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~v 268 (421)
T COG5159 190 AARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAV 268 (421)
T ss_pred HHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999 88999999999999999999999999999999999987 4689999999999999999988877654
No 4
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.00 E-value=0.0003 Score=60.36 Aligned_cols=126 Identities=13% Similarity=0.166 Sum_probs=108.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++..|.+.|++++|.+...+.+..|-. ....+++..--+++....+|+..+.....+|......--.+..
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~---------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~ 111 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTS---------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWER 111 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCC---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHH
Confidence 8999999999999999999999988754 5678999999999999999999999999999998888556889
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhccccc---ccChhhHHHHHHHHHHHHhcc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYGFYLHLLFL 231 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde---~g~~~a~~~LKYlvL~~iL~~ 231 (253)
...++-..|.-++..|||++|-..|.++--.|.. ..=--...+--|.+||.+.+-
T Consensus 112 ~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~ 169 (177)
T PF10602_consen 112 RNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATL 169 (177)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999877753 221233445559999999864
No 5
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.67 E-value=0.005 Score=56.83 Aligned_cols=183 Identities=12% Similarity=0.129 Sum_probs=105.7
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh------------h---hhhHHHHHHHHHHhcCCCCcc-hhH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT------------R---NYSEKCINNIMDFVSGSASQN-FSL 70 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~------------k---a~~~K~i~~ild~~s~~~~~~-~~~ 70 (253)
.....++..++.+|.+.|+++++...+.+.+..- +.-. . ..+.+.+..++..-...+... ..+
T Consensus 104 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 182 (389)
T PRK11788 104 EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHF 182 (389)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 3455678899999999999999999988887532 2110 1 112233333332211100000 000
Q ss_pred HH---------HHHHHHHHHHHHhhh-hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHH
Q 025427 71 LR---------EFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEV 140 (253)
Q Consensus 71 l~---------~~y~~~~e~i~~a~~-erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv 140 (253)
.. ..++-..+.++.+-. ...-....+.++.++...|++++|...++++.+. + .....++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--------~---p~~~~~~ 251 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ--------D---PEYLSEV 251 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--------C---hhhHHHH
Confidence 00 001111111111110 0011123346889999999999999888888765 1 1123345
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 141 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 141 ~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
+..-..+|...++..++...+.++.... |.+.+ . ..-|.++...++++.|...|-++.+.+
T Consensus 252 ~~~l~~~~~~~g~~~~A~~~l~~~~~~~---p~~~~---~-~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 252 LPKLMECYQALGDEAEGLEFLRRALEEY---PGADL---L-LALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCchH---H-HHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 5555677888899999999888887652 22211 1 344667888899999999999998864
No 6
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.56 E-value=0.016 Score=47.74 Aligned_cols=174 Identities=11% Similarity=0.025 Sum_probs=111.1
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
++.++.-.+..+++..+...|+++++.+.+.+.+..- |....... .+-..... .+ +. +...+...++++
T Consensus 25 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~-----~la~~~~~-~~-~~---~~A~~~~~~al~ 93 (234)
T TIGR02521 25 TDRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYL-----ALALYYQQ-LG-EL---EKAEDSFRRALT 93 (234)
T ss_pred ccCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHH-----HHHHHHHH-cC-CH---HHHHHHHHHHHh
Confidence 3455677889999999999999999999999988765 54332221 11111111 11 11 122333444444
Q ss_pred HhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 84 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 84 ~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
-..+.. .....++.++...|+|++|....++..+.-... . ..+.+..-..++...+++.++...+.+
T Consensus 94 ~~~~~~---~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (234)
T TIGR02521 94 LNPNNG---DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP---Q-------PARSLENAGLCALKAGDFDKAEKYLTR 160 (234)
T ss_pred hCCCCH---HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc---c-------chHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 322221 123467999999999999999888887631111 1 112233336678889999999999999
Q ss_pred HHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 164 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 164 a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+...... +|.. ...-|.++...++|+.|...|-++.+-
T Consensus 161 ~~~~~~~--~~~~----~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 161 ALQIDPQ--RPES----LLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred HHHhCcC--ChHH----HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8875432 2332 223467788899999999998887765
No 7
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.51 E-value=0.0037 Score=50.95 Aligned_cols=94 Identities=16% Similarity=0.230 Sum_probs=51.0
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
.|.+|..+++.|+|++|...++.+...-+ |+ .+--.+.+--.+++...+++.++...+.. ++.|
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~-----d~----~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAP-----DP----ELKPLARLRLARILLQQGQYDEALATLQQ-------IPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CH----HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------ccCc
Confidence 34566666677777777666666666421 11 11111111123445566666665555532 3334
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHH
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EA 204 (253)
...+...+.-|-++...|||+.|...|-.|
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 455666666677777777777776666544
No 8
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.37 E-value=0.026 Score=51.98 Aligned_cols=94 Identities=9% Similarity=0.008 Sum_probs=61.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.++++.|++++|...+++..+..+. ..+.+..-.++|...++..++...+.++.... |..
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~ 247 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQ------------CVRASILLGDLALAQGDYAAAIEALERVEEQD-----PEY 247 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----hhh
Confidence 6777778888888888887777665211 13455566677888888888888888877642 221
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
...+-..-|..+...++++.|...|-++.+.
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1111122244567778888888877777664
No 9
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.25 E-value=0.024 Score=46.15 Aligned_cols=76 Identities=24% Similarity=0.303 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHH
Q 025427 77 TTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 156 (253)
Q Consensus 77 ~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~k 156 (253)
.....++...+..+---.+++||.++++.|+|++|+..|+.+ ++ ..+--.++.+.=.+|.+.++.++
T Consensus 70 ~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~----------~~---~~~~~~~~~~~Gdi~~~~g~~~~ 136 (145)
T PF09976_consen 70 ALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI----------PD---EAFKALAAELLGDIYLAQGDYDE 136 (145)
T ss_pred HHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc----------cC---cchHHHHHHHHHHHHHHCCCHHH
Confidence 333334433333344456779999999999999999988551 23 33445577789999999999999
Q ss_pred HHHHHHHHH
Q 025427 157 LKQLYQKAL 165 (253)
Q Consensus 157 lk~~y~~a~ 165 (253)
++.+|++|+
T Consensus 137 A~~~y~~Al 145 (145)
T PF09976_consen 137 ARAAYQKAL 145 (145)
T ss_pred HHHHHHHhC
Confidence 999999874
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.15 E-value=0.019 Score=57.12 Aligned_cols=182 Identities=18% Similarity=0.271 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh---hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~---v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
-.+..|+.+|.++|+++++..++++.+... .+ .+-..+++.++++...+..-.. .+.-...|.-.++.+..+..
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~-~~~~~~~~~~v~~~l~~~~~~~~~~~~--~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIY-EKLLGASHPEVAAQLSELAAILQSMNE--YEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHH-HHhhccChHHHHHHHHHHHHHHHHhcc--hhHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999999999888 44 3445677777777666653222 33333444444444442222
Q ss_pred h-h-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 88 E-R-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 88 e-r-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
+ . .-=++.-+|+.+|+.+|+|++|.++.++..+..+...+..+.--+ .=+-=+... |...+++..+-++|..|.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~---~~l~~la~~-~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG---KPLNQLAEA-YEELKKYEEAEQLFEEAK 436 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh---HHHHHHHHH-HHHhcccchHHHHHHHHH
Confidence 2 2 344566799999999999999999988888887776443221111 112222222 367788888999999999
Q ss_pred hhhcc--CCchhHHHHHHhhccccccccccHHHHHHH
Q 025427 166 AIKSA--IPHPRIMGIIRECGGKMHMAERQWADAATD 200 (253)
Q Consensus 166 ~~~~a--I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~ 200 (253)
.|.-+ ..||-+.+...=.++ +|-.-|+|+.|..+
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEEL 472 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHH
Confidence 88733 345777777776654 36677888888765
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=97.12 E-value=0.18 Score=50.40 Aligned_cols=94 Identities=17% Similarity=0.153 Sum_probs=65.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.+++..|++++|...+++..+.- . ...+.+..-..++..++++.++...|.++..... .+|.
T Consensus 335 ~~lg~~~~~~g~~~eA~~~~~kal~l~-------P-----~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p--~~~~ 400 (615)
T TIGR00990 335 NLRGTFKCLKGKHLEALADLSKSIELD-------P-----RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS--EDPD 400 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-------C-----CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH
Confidence 367888888999999988877776551 1 1234455566677788888888888888866521 1232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+-..-|.++...|||+.|..+|-++.+-
T Consensus 401 ----~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 401 ----IYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3344577788888888888888887764
No 12
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=97.10 E-value=0.065 Score=44.00 Aligned_cols=161 Identities=15% Similarity=0.108 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
..++..++.++...|+++++.+.+++.+... +.-+. ....+-..+.. .+ + .+...+.+.++++.... .
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~~~~~~~~-~g-~---~~~A~~~~~~~~~~~~~-~ 132 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGD-----VLNNYGTFLCQ-QG-K---YEQAMQQFEQAIEDPLY-P 132 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHH-----HHHHHHHHHHH-cc-c---HHHHHHHHHHHHhcccc-c
Confidence 3567788999999999999999999998876 54332 12222222211 11 1 12223333443332111 1
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
........++.++...|++++|...+.+..+.-+. + .+.+..-.+++...+++.++...+.++....
T Consensus 133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 199 (234)
T TIGR02521 133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-----R-------PESLLELAELYYLRGQYKDARAYLERYQQTY- 199 (234)
T ss_pred cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-----C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 11222346799999999999999999988876221 1 2345566788999999999999999998872
Q ss_pred cCCc-hhHHHHHHhhccccccccccHHHHHHHH
Q 025427 170 AIPH-PRIMGIIRECGGKMHMAERQWADAATDF 201 (253)
Q Consensus 170 aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F 201 (253)
++ |...- ..+.++...++++.|..+.
T Consensus 200 --~~~~~~~~----~~~~~~~~~~~~~~a~~~~ 226 (234)
T TIGR02521 200 --NQTAESLW----LGIRIARALGDVAAAQRYG 226 (234)
T ss_pred --CCCHHHHH----HHHHHHHHHhhHHHHHHHH
Confidence 22 43332 4466677888999987654
No 13
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.08 E-value=0.22 Score=45.21 Aligned_cols=181 Identities=10% Similarity=0.110 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
-.+.+.+..|...|+++++.+.|..........=++..+++........+... +++--...|+-+.+.....++-+.
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~---~~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG---DPDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT---THHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45788899999999999999999888766622223455666666655555533 121112233333333333334446
Q ss_pred HHHHhhhHHHHHhhh-cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh-
Q 025427 91 WFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK- 168 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~-~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~- 168 (253)
.=+...++|.+|-+. |++++|.+.-++-....... +. .....+++.==..++..++++.++-..|.+.-+..
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e---~~---~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE---GS---PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT---T----HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC---CC---hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 666777999999999 99999999999999988775 33 55566676666778889999999999999875532
Q ss_pred -ccCCchhHHHHHHhhccccccccccHHHHHHHH
Q 025427 169 -SAIPHPRIMGIIRECGGKMHMAERQWADAATDF 201 (253)
Q Consensus 169 -~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F 201 (253)
+....+. ....-...|++|+..+|+-.|...|
T Consensus 187 ~~~l~~~~-~~~~~l~a~l~~L~~~D~v~A~~~~ 219 (282)
T PF14938_consen 187 ENNLLKYS-AKEYFLKAILCHLAMGDYVAARKAL 219 (282)
T ss_dssp CHCTTGHH-HHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred cccccchh-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 2222221 2223345788888899987776554
No 14
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.07 E-value=0.14 Score=50.85 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=60.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC----
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---- 172 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~---- 172 (253)
.++.++...|++++|....+++.+.-+ ++ .+++..-..+|...++.+++...|.++......-+
T Consensus 606 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 673 (899)
T TIGR02917 606 MLGRAQLAAGDLNKAVSSFKKLLALQP-----DS-------ALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQI 673 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 567777777777777777776655421 11 13344445566667777777777776665432200
Q ss_pred -------------------------chhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 173 -------------------------HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 173 -------------------------~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
+|. ...+...-|.+++..|+|+.|...|-++.+..
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 010 11223345778889999999999999888754
No 15
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=97.01 E-value=0.14 Score=50.79 Aligned_cols=92 Identities=20% Similarity=0.206 Sum_probs=53.8
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.++.+.|++++|..+++.+.+.-.. + .+++.....+|...+++.++...|.++......- +.
T Consensus 673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~ 738 (899)
T TIGR02917 673 IGLAQLLLAAKRTESAKKIAKSLQKQHPK-----A-------ALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS--QN 738 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-----C-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc--hH
Confidence 46777888888888888888777665221 1 1344555667777788888888887777653221 11
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
..+ -|.++...|+|+.|...+-++.+
T Consensus 739 ~~~-----l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 739 AIK-----LHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHH-----HHHHHHHCCCHHHHHHHHHHHHH
Confidence 111 12334445555555555544444
No 16
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.00 E-value=0.0085 Score=45.33 Aligned_cols=113 Identities=10% Similarity=0.030 Sum_probs=85.4
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-CCc
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-IPH 173 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a-I~~ 173 (253)
-..++..++..|+|++|.+.++++.+.-+ + .....+++..-..++...+++..+...|..+...... .+.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 75 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYP------K---STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA 75 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC------C---ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence 34788999999999999999999887521 2 2344567777889999999999999999998865322 222
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHH
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 222 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKY 222 (253)
| .+...-|.++...++++.|...|-++.+.+- +++...++++.
T Consensus 76 ~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~ 118 (119)
T TIGR02795 76 P----DALLKLGMSLQELGDKEKAKATLQQVIKRYP--GSSAAKLAQKR 118 (119)
T ss_pred c----HHHHHHHHHHHHhCChHHHHHHHHHHHHHCc--CChhHHHHHhc
Confidence 3 3344555667789999999999999999874 56777777664
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.94 E-value=0.08 Score=52.96 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT 45 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ 45 (253)
++..++.++...|+++++...+++.+..- |..+
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~ 365 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELD-PRVT 365 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcH
Confidence 56677888889999999999999888765 5443
No 18
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.89 E-value=0.12 Score=44.51 Aligned_cols=177 Identities=12% Similarity=0.119 Sum_probs=111.9
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
..++.-.++.+++..+.+.|+++++.+.+.+++... | +. . ..
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p----------------------~~-~--------~~------ 69 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-P----------------------FS-P--------YA------ 69 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C----------------------Cc-h--------hH------
Confidence 457788888999999999999999888877766554 3 10 0 00
Q ss_pred hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh--------cCHHH
Q 025427 85 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--------KNNKK 156 (253)
Q Consensus 85 a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~--------~n~~k 156 (253)
-...+.++.+|+..|++++|....+++.+.-++.+ + ..+.+..-...+... ++..+
T Consensus 70 -------~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~------~~~a~~~~g~~~~~~~~~~~~~~~~~~~ 133 (235)
T TIGR03302 70 -------EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---D------ADYAYYLRGLSNYNQIDRVDRDQTAARE 133 (235)
T ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---c------hHHHHHHHHHHHHHhcccccCCHHHHHH
Confidence 01224568889999999999999999988754321 1 112222222233322 56666
Q ss_pred HHHHHHHHHhhhccCCc-hhHHHHH----------HhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHH
Q 025427 157 LKQLYQKALAIKSAIPH-PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFY 225 (253)
Q Consensus 157 lk~~y~~a~~~~~aI~~-P~i~g~I----------~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL 225 (253)
+...|.++....-.-.. +.....+ ..--|.+|+..|+|..|...|-++.+.|.. +|....++-.+..
T Consensus 134 A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~a~~~l~~ 211 (235)
T TIGR03302 134 AFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPD--TPATEEALARLVE 211 (235)
T ss_pred HHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC--CcchHHHHHHHHH
Confidence 77777776543222111 2222222 123466788999999999999999988753 4666667667777
Q ss_pred HHHhccCCCchH
Q 025427 226 LHLLFLISIYFL 237 (253)
Q Consensus 226 ~~iL~~s~id~~ 237 (253)
+....+....-.
T Consensus 212 ~~~~lg~~~~A~ 223 (235)
T TIGR03302 212 AYLKLGLKDLAQ 223 (235)
T ss_pred HHHHcCCHHHHH
Confidence 777666544433
No 19
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.81 E-value=0.024 Score=47.31 Aligned_cols=129 Identities=15% Similarity=0.082 Sum_probs=94.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-h
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 174 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P 174 (253)
..++..+...|+|++|....++..+.-+.. ..-..++..-..+|...+++.++...|.++..+....+- -
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 109 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEEDP---------NDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSAL 109 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---------chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 578899999999999999999887763221 112456777789999999999999999999987544322 3
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccccccc--Chhh-HHHHHHHHHHHHhccCCCch
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG--NQRR-IQCLKYGFYLHLLFLISIYF 236 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g--~~~a-~~~LKYlvL~~iL~~s~id~ 236 (253)
...|.+-..-|......++++.|..+|-+|-+.|..+- +|.. +.++.++ +....+.|||
T Consensus 110 ~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~---~~~~~~~~~~ 171 (172)
T PRK02603 110 NNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWL---KTTGRSNIDV 171 (172)
T ss_pred HHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHH---HhcCccccCc
Confidence 35677888888888888999999999999999888763 4443 2333333 3334455554
No 20
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.72 E-value=0.016 Score=39.62 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=72.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|++++|...+++..+..+. + . +++..-..+|...+++.++...+..+....... |
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~---~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~--~- 68 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-----N---A----DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN--A- 68 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-----c---H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--h-
Confidence 46889999999999999998888776322 1 1 667778888888999999999999987754332 2
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.....-|.++...++++.|..+|-++.+.
T Consensus 69 ---~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 69 ---KAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred ---hHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33444556788889999999998888764
No 21
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.68 E-value=0.2 Score=43.22 Aligned_cols=140 Identities=11% Similarity=0.120 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh---h-----------------------hhHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---N-----------------------YSEKCINNIMD 58 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k---a-----------------------~~~K~i~~ild 58 (253)
.+.|.-.+...++.++.+.|+++++.+.+++++... |.=+. + .+.+..+++++
T Consensus 65 ~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 143 (235)
T TIGR03302 65 FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR 143 (235)
T ss_pred CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence 456778899999999999999999999999998766 42111 1 11222222222
Q ss_pred HhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHH
Q 025427 59 FVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 138 (253)
Q Consensus 59 ~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~Ll 138 (253)
..+.++.. .-.+..+.+..+ .--...+.++.+|+..|+|.+|....+++.+..++ .....
T Consensus 144 ~~p~~~~~---------~~a~~~~~~~~~--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~ 203 (235)
T TIGR03302 144 RYPNSEYA---------PDAKKRMDYLRN--RLAGKELYVARFYLKRGAYVAAINRFETVVENYPD---------TPATE 203 (235)
T ss_pred HCCCChhH---------HHHHHHHHHHHH--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCC---------CcchH
Confidence 22111100 000111111110 00112347889999999999999999998888543 23456
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
+.+..-..+|..+++..++...+....
T Consensus 204 ~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 204 EALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777788888999999999888766543
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.53 E-value=0.59 Score=42.35 Aligned_cols=156 Identities=14% Similarity=0.198 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k-a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
..=+++.+.+.++.+. +++++.++|++..... ...++ ..+++...++-+.+....+ + .++-++...+++++..
T Consensus 73 ~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y-~~~G~~~~aA~~~~~lA~~ye~~~~-d---~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 73 EAAKAYEEAANCYKKG-DPDEAIECYEKAIEIY-REAGRFSQAAKCLKELAEIYEEQLG-D---YEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHH-HHCT-HHHHHHHHHHHHHHHCCTT------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHHHcC-C---HHHHHHHHHHHHHHHH
Confidence 3446777778887665 9999999999999877 44443 5567888887777765411 1 3345555555555544
Q ss_pred hh---hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 87 NE---RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 87 ~e---rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
.+ +.--+..++.|.++...|+|++|.++.+++-+.+...+.. +...=+.++--+-+|...+|...++..+..
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~-----~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLL-----KYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTT-----GHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccccc-----chhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33 2334455599999999999999999999998886543221 222223333334466677899999999988
Q ss_pred HHhhhccCCch
Q 025427 164 ALAIKSAIPHP 174 (253)
Q Consensus 164 a~~~~~aI~~P 174 (253)
....-.+-.++
T Consensus 222 ~~~~~~~F~~s 232 (282)
T PF14938_consen 222 YCSQDPSFASS 232 (282)
T ss_dssp HGTTSTTSTTS
T ss_pred HHhhCCCCCCc
Confidence 87666555443
No 23
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.49 E-value=0.48 Score=40.88 Aligned_cols=171 Identities=12% Similarity=0.111 Sum_probs=105.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 85 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a 85 (253)
.+|.-+++.+.+...++.|+++++.+.++.+..-. |. ++- ..+
T Consensus 1 p~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-P~-------------------s~~------------a~~----- 43 (203)
T PF13525_consen 1 PEDTAEALYQKALEALQQGDYEEAIKLFEKLIDRY-PN-------------------SPY------------APQ----- 43 (203)
T ss_dssp ----HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH--TT-------------------STT------------HHH-----
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CC-------------------ChH------------HHH-----
Confidence 36888999999999999999999999887776655 32 111 000
Q ss_pred hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh--------hcCHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE--------TKNNKKL 157 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~--------~~n~~kl 157 (253)
..+.+|..++..|+|.+|....++..+.-++.+. .-+++-+--..++. -+|...+
T Consensus 44 --------A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~---------~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~ 106 (203)
T PF13525_consen 44 --------AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK---------ADYALYMLGLSYYKQIPGILRSDRDQTST 106 (203)
T ss_dssp --------HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT---------HHHHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc---------hhhHHHHHHHHHHHhCccchhcccChHHH
Confidence 1235677888999999999888888877554322 11222222222211 3444555
Q ss_pred HHHHHHHHhhhccCCc----hhHHHHH----------HhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHH
Q 025427 158 KQLYQKALAIKSAIPH----PRIMGII----------RECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYG 223 (253)
Q Consensus 158 k~~y~~a~~~~~aI~~----P~i~g~I----------~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYl 223 (253)
+.++....++-+.=|. +...-.| ...-|+.+...+.|..|...|=+..++| .|++.+-.+|.+|
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y--p~t~~~~~al~~l 184 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY--PDTPAAEEALARL 184 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCCchHHHHHHHH
Confidence 5555555554444443 3332223 3345889999999999999999999999 4778888899999
Q ss_pred HHHHHhccC
Q 025427 224 FYLHLLFLI 232 (253)
Q Consensus 224 vL~~iL~~s 232 (253)
+-+....+.
T Consensus 185 ~~~y~~l~~ 193 (203)
T PF13525_consen 185 AEAYYKLGL 193 (203)
T ss_dssp HHHHHHTT-
T ss_pred HHHHHHhCC
Confidence 988876653
No 24
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.36 E-value=0.064 Score=44.45 Aligned_cols=119 Identities=15% Similarity=0.056 Sum_probs=89.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-h
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 174 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P 174 (253)
..++.++...|+|++|...++......... .....++.-=..+|...++..++...|.+|..+...... .
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~---------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDP---------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccc---------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 477899999999999999988887763211 112334555567888899999999999999987544333 5
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcccccc--cCh-hhHHHHHHH
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQ-RRIQCLKYG 223 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~--g~~-~a~~~LKYl 223 (253)
...|.|-..-|..+...+||+.|..+|-+|++.|..+ .+| +-..+..+|
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~ 161 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWL 161 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 5778888877888889999999999999999988876 444 334444444
No 25
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.33 E-value=0.48 Score=45.05 Aligned_cols=167 Identities=15% Similarity=0.231 Sum_probs=108.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS----AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLK 80 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~----~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e 80 (253)
.|+....|+.||..||-+.++++++.+.=+.+...-.. .|..-|.|=+. ... .+++ ++...++...
T Consensus 136 e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq-----~~~--~~~~---~d~A~~~l~k 205 (389)
T COG2956 136 EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQ-----QAL--ASSD---VDRARELLKK 205 (389)
T ss_pred chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHH-----HHh--hhhh---HHHHHHHHHH
Confidence 46667777777777777777777777766666555411 11111222111 111 1111 1223333333
Q ss_pred HHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 025427 81 ALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 160 (253)
Q Consensus 81 ~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~ 160 (253)
+++. +..-.|.++-++.+++..|+|++|.+.++.+.+. | ..++-||.-.=...|..++.......-
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--------n---~~yl~evl~~L~~~Y~~lg~~~~~~~f 271 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--------N---PEYLSEVLEMLYECYAQLGKPAEGLNF 271 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHh--------C---hHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3332 2344678889999999999999999888888776 5 779999999999999999999999999
Q ss_pred HHHHHhhhccCCchh-HHHHHHhhccccccccccHHHHHHHHHH
Q 025427 161 YQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQWADAATDFFE 203 (253)
Q Consensus 161 y~~a~~~~~aI~~P~-i~g~I~e~~Gkl~~~ekdy~tA~s~F~E 203 (253)
++.+....+.+.--. +--.|-+.-|+ +.|..+.++
T Consensus 272 L~~~~~~~~g~~~~l~l~~lie~~~G~--------~~Aq~~l~~ 307 (389)
T COG2956 272 LRRAMETNTGADAELMLADLIELQEGI--------DAAQAYLTR 307 (389)
T ss_pred HHHHHHccCCccHHHHHHHHHHHhhCh--------HHHHHHHHH
Confidence 998887777665533 33445555565 556666554
No 26
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.26 E-value=0.19 Score=47.91 Aligned_cols=99 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..+-++.++.+.|++++|.+++++..+.-.. + ....+ ..+..-.....+|..++.....++++ .-|.
T Consensus 265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd-----~---~~~~~--~~l~~~~~l~~~~~~~~~~~~e~~lk---~~p~ 331 (409)
T TIGR00540 265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGD-----D---RAISL--PLCLPIPRLKPEDNEKLEKLIEKQAK---NVDD 331 (409)
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-----c---ccchh--HHHHHhhhcCCCChHHHHHHHHHHHH---hCCC
Confidence 3347899999999999999999988886332 2 11111 12222222234677777777777664 3444
Q ss_pred -hhHHHHHHhhccccccccccHHHHHHHHH--HHhcc
Q 025427 174 -PRIMGIIRECGGKMHMAERQWADAATDFF--EAFKN 207 (253)
Q Consensus 174 -P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~--EAFe~ 207 (253)
|. +.+..+=|.++...++|.+|..+|- .+.+.
T Consensus 332 ~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 332 KPK--CCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred Chh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 55 6677777899999999999999766 46653
No 27
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.17 E-value=0.31 Score=48.63 Aligned_cols=161 Identities=13% Similarity=0.111 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhhhhh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHH-HHHHHHhhc
Q 025427 75 YQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI-EIQMYTETK 152 (253)
Q Consensus 75 y~~~~e~i~~a~~er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~l-E~~~y~~~~ 152 (253)
+.......+|-+++- ..+++...++..|...|+|++|.++.+.-.+-+.+..| .+..+++..+- =..+|..++
T Consensus 181 ~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-----~~hl~va~~l~~~a~~y~~~~ 255 (508)
T KOG1840|consen 181 LKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-----LKHLVVASMLNILALVYRSLG 255 (508)
T ss_pred HHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-----ccCHHHHHHHHHHHHHHHHhc
Confidence 344444444555543 77778888999999999999999999998888776654 25555665555 567889999
Q ss_pred CHHHHHHHHHHHHhhhccCC---chhHHHHHHhhccccccccccHHHHHHHHHHHhccccc---ccChhhHHHHHHHHHH
Q 025427 153 NNKKLKQLYQKALAIKSAIP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYGFYL 226 (253)
Q Consensus 153 n~~klk~~y~~a~~~~~aI~---~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde---~g~~~a~~~LKYlvL~ 226 (253)
++.++..+|..|++|.-.+. ||.+-...--. ++++...|+|+.|..++=+|.+=+.. +-.|+--..|..+.+.
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nL-a~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNL-AVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH-HHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999998874 67765554433 57788999999999999999887776 3346666777777666
Q ss_pred HHhccCCCchHHHHH
Q 025427 227 HLLFLISIYFLYLYF 241 (253)
Q Consensus 227 ~iL~~s~id~~~~~~ 241 (253)
..+.+.....-.+|-
T Consensus 335 ~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQ 349 (508)
T ss_pred HHHhcchhHHHHHHH
Confidence 666655444444443
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.12 E-value=0.22 Score=47.44 Aligned_cols=107 Identities=15% Similarity=0.310 Sum_probs=68.5
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH- 173 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~- 173 (253)
...+|..+...|+.++|..++.+..+. .. |+ ++..+..++ ..+|..+..+...+.. ..-|.
T Consensus 266 ~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~---~~--------~l~~l~~~l--~~~~~~~al~~~e~~l---k~~P~~ 327 (398)
T PRK10747 266 QVAMAEHLIECDDHDTAQQIILDGLKR--QY---DE--------RLVLLIPRL--KTNNPEQLEKVLRQQI---KQHGDT 327 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CC---CH--------HHHHHHhhc--cCCChHHHHHHHHHHH---hhCCCC
Confidence 347899999999999999999887762 22 22 112222222 3366666544444433 33333
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhcc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFL 231 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~ 231 (253)
| .+..+=|.+++..++|.+|..+|-.+.+. +|.... |..|+.++..
T Consensus 328 ~----~l~l~lgrl~~~~~~~~~A~~~le~al~~-----~P~~~~---~~~La~~~~~ 373 (398)
T PRK10747 328 P----LLWSTLGQLLMKHGEWQEASLAFRAALKQ-----RPDAYD---YAWLADALDR 373 (398)
T ss_pred H----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCHHH---HHHHHHHHHH
Confidence 4 46778899999999999999999998874 243333 3445555544
No 29
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.75 E-value=1.3 Score=39.58 Aligned_cols=149 Identities=9% Similarity=0.134 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH---------HHHhcCCC--CcchhHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI---------MDFVSGSA--SQNFSLLR 72 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~i---------ld~~s~~~--~~~~~~l~ 72 (253)
+.++|..+|...++..+++.++++++...+++++... |.=+++--+--+..+ ++.+...+ +.+.....
T Consensus 63 P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~ 141 (243)
T PRK10866 63 PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHAR 141 (243)
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHH
Confidence 4568999999999999999999999999999999887 644332222222221 12222111 12233333
Q ss_pred HHHHHHHHHHHHhh--------hhh-hHHHHhh-----hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHH
Q 025427 73 EFYQTTLKALEEAK--------NER-LWFKTNL-----KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL 138 (253)
Q Consensus 73 ~~y~~~~e~i~~a~--------~er-l~lk~~l-----kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~Ll 138 (253)
.-++...+.|+.-. +.| ..+|..| .-|+.|++.|.|..|..=.+.+.+.-+. ....-
T Consensus 142 ~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~---------t~~~~ 212 (243)
T PRK10866 142 AAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPD---------TQATR 212 (243)
T ss_pred HHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCC---------CchHH
Confidence 44444445454211 233 4455444 7899999999999988777777766433 44566
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~ 162 (253)
|...+=.+.|.+++....++....
T Consensus 213 eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 213 DALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 778888889999988887776543
No 30
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=95.70 E-value=0.99 Score=39.03 Aligned_cols=136 Identities=13% Similarity=0.118 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhhh-hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH-HHh
Q 025427 73 EFYQTTLKALEEAKN-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTE 150 (253)
Q Consensus 73 ~~y~~~~e~i~~a~~-erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~-y~~ 150 (253)
.........++-..+ -..| ..|+.+|+..|+|++|....+...+.-. ++ .+++.--..+ |..
T Consensus 57 ~~i~~l~~~L~~~P~~~~~w----~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-----~~-------~~~~~~lA~aL~~~ 120 (198)
T PRK10370 57 AQLQALQDKIRANPQNSEQW----ALLGEYYLWRNDYDNALLAYRQALQLRG-----EN-------AELYAALATVLYYQ 120 (198)
T ss_pred HHHHHHHHHHHHCCCCHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHh
Confidence 334444555554333 2355 4679999999999999999988777622 22 3455555554 355
Q ss_pred hcC--HHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHH
Q 025427 151 TKN--NKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHL 228 (253)
Q Consensus 151 ~~n--~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~i 228 (253)
.++ .+++++++.++....-. +|. ....-|..++..|||+.|..+|-.+.+.-.. +++|+- .+.=+-.+++
T Consensus 121 ~g~~~~~~A~~~l~~al~~dP~--~~~----al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~-~~~r~~-~i~~i~~a~~ 192 (198)
T PRK10370 121 AGQHMTPQTREMIDKALALDAN--EVT----ALMLLASDAFMQADYAQAIELWQKVLDLNSP-RVNRTQ-LVESINMAKL 192 (198)
T ss_pred cCCCCcHHHHHHHHHHHHhCCC--Chh----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH-HHHHHHHHHH
Confidence 565 59999999999876544 222 2233466778999999999999999886544 555543 3366667777
Q ss_pred hccC
Q 025427 229 LFLI 232 (253)
Q Consensus 229 L~~s 232 (253)
|.+.
T Consensus 193 ~~~~ 196 (198)
T PRK10370 193 LQNR 196 (198)
T ss_pred Hhhc
Confidence 7554
No 31
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.61 E-value=0.077 Score=38.07 Aligned_cols=68 Identities=18% Similarity=0.229 Sum_probs=57.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..++.+|.+.|+|++|++..++..+-.+..+ ++ ...+..++.-=..+|..+++..++...|.+|.++.
T Consensus 9 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 9 NNLARVYRELGRYDEALDYYEKALDIEEQLG--DD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--TH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC--CC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3789999999999999999999998866653 34 56678888888999999999999999999998763
No 32
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.42 E-value=2.6 Score=43.65 Aligned_cols=190 Identities=12% Similarity=0.009 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN- 87 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~- 87 (253)
...+.-.++.++...|+++++..++.+.+... +.-.. ...-.....+-.+-...+. . ..-...+.++++.+..
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~-~~~~~a~~~lg~~~~~~G~-~---~~A~~~~~~al~~~~~~ 524 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWY-YSRIVATSVLGEVHHCKGE-L---ARALAMMQQTEQMARQH 524 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccH-HHHHHHHHHHHHHHHHcCC-H---HHHHHHHHHHHHHHhhh
Confidence 33344456778889999999999999888754 32110 0000011111111111121 1 1222334444443332
Q ss_pred --hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 88 --ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 88 --erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
...-......++.+++..|++++|...+++....+...++ .+ .....-++.....++...+++..+.+.+..+.
T Consensus 525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~---~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQ---LPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-cc---ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 1122234458899999999999999999998888766432 11 12222335566788899999999999999998
Q ss_pred hhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 166 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 166 ~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
.+..... |.........-|.++...+|+..|...+-++-.-+.
T Consensus 601 ~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~ 643 (903)
T PRK04841 601 EVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG 643 (903)
T ss_pred HhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 8766554 333333344567788899999999988877755333
No 33
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.34 E-value=3 Score=45.27 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREML 37 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll 37 (253)
++..++..|++.|+++++.++|.++.
T Consensus 509 TynaLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 509 TFGALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44556777888888888888777764
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.19 E-value=0.59 Score=31.56 Aligned_cols=29 Identities=38% Similarity=0.666 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
++..++..++..|+++++.+.+++.+...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 30 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD 30 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 46678888888888888887777666554
No 35
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=95.14 E-value=0.12 Score=35.76 Aligned_cols=60 Identities=13% Similarity=0.252 Sum_probs=50.0
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.+|..+++.|+|++|...++++.+.- ..-.+++..--.++...+++.++.+.|..+....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD------------PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 57899999999999999999998872 1246778888899999999999999999987653
No 36
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=94.96 E-value=1.6 Score=45.23 Aligned_cols=110 Identities=8% Similarity=0.070 Sum_probs=81.1
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
|+...+.++.++...|++++|...++++...-+ ++ .+++.-...++...++..++.+.|.+|....
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P-----~n-------~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-- 423 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAP-----GN-------QGLRIDYASVLQARGWPRAAENELKKAEVLE-- 423 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--
Confidence 455566899999999999999999999877621 11 3677888889999999999999999998865
Q ss_pred CCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHH
Q 025427 171 IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 219 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~ 219 (253)
|. |. +...-|..++..++|++|...+=+.-+-+.+....++..-
T Consensus 424 -Pd~~~----l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~ 468 (765)
T PRK10049 424 -PRNIN----LEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR 468 (765)
T ss_pred -CCChH----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 32 22 2333344567778899999998888876655443444443
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.88 E-value=1.1 Score=48.47 Aligned_cols=60 Identities=7% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 147 MYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 147 ~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
++...++..++.+.|.++......-+.-.-.+.+-...|.++...++++.|-.+|-.|..
T Consensus 680 ~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 680 AWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 444555555555555555443211111001233344445566666666666666666654
No 38
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.73 E-value=0.16 Score=36.46 Aligned_cols=71 Identities=15% Similarity=0.145 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 137 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 137 LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+..++-.=..+|..++++.++...|.+|.++.....+ +...+..--.=|.++...||+++|..+|-+|++=
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4566777788999999999999999999999666765 4445777777889999999999999999998763
No 39
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.54 E-value=3 Score=45.22 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=51.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
-++..|...|++++|.++++++.+.=-.+ | ..+|..=+.+|.+.+++.++..+|....... -.|. ..
T Consensus 654 sLI~a~~k~G~~eeA~~l~~eM~k~G~~p----d-------~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g-~~Pdvvt 721 (1060)
T PLN03218 654 ALVDVAGHAGDLDKAFEILQDARKQGIKL----G-------TVSYSSLMGACSNAKNWKKALELYEDIKSIK-LRPTVST 721 (1060)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC----C-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCCHHH
Confidence 45566666677777777666666541111 1 2355566677777777777777777654321 1122 22
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHh
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAF 205 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAF 205 (253)
--..|+- ++..+++++|...|-+--
T Consensus 722 yN~LI~g-----y~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 722 MNALITA-----LCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHH-----HHHCCCHHHHHHHHHHHH
Confidence 2233333 345677777776666543
No 40
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=94.50 E-value=2.4 Score=38.49 Aligned_cols=74 Identities=15% Similarity=0.108 Sum_probs=61.3
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
..+..+..++..|+.++|..+|+.+....+.. .+.......+++.+++.-+++..+|...+.+.+..|+..+..
T Consensus 266 ~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 266 NDLHAALALAGAGDKDALDKLLAALKGRASSA---DDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc---CchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 33578899999999999999999999987663 123336678999999999999999999999999999877643
No 41
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=1.1 Score=42.86 Aligned_cols=147 Identities=12% Similarity=0.201 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 025427 8 WGFKALKQTVKLYYRL------GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA 81 (253)
Q Consensus 8 w~fkAlkql~kl~~~~------~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~ 81 (253)
|..|=-.|+.-...+- ..-+.+++.|..+..-+-.+|..=...++.-.+.+.++. ++...++++++.+.+.++
T Consensus 30 y~eKLW~QLt~~l~~fvd~~~f~~~~~~l~lY~NFvsefe~kINplslvei~l~~~~~~~D-~~~al~~Le~i~~~~~~~ 108 (380)
T KOG2908|consen 30 YEEKLWHQLTLALVDFVDDPPFQAGDLLLQLYLNFVSEFETKINPLSLVEILLVVSEQISD-KDEALEFLEKIIEKLKEY 108 (380)
T ss_pred HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHhh
Confidence 3444445555443322 233567888888887776788776777777777777762 233466666666555543
Q ss_pred HHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 82 LEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 82 i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
+..-=..+..+-.++++++.|+..++.++|.++.+.+...++.+.....++ |.+=+|+|...+|++ +.|
T Consensus 109 ----~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f----Y~lssqYyk~~~d~a---~yY 177 (380)
T KOG2908|consen 109 ----KEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF----YSLSSQYYKKIGDFA---SYY 177 (380)
T ss_pred ----ccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH----HHHHHHHHHHHHhHH---HHH
Confidence 221122334445566667999999999999999999999977655455555 899999999999876 567
Q ss_pred HHHHh
Q 025427 162 QKALA 166 (253)
Q Consensus 162 ~~a~~ 166 (253)
+.|+.
T Consensus 178 r~~L~ 182 (380)
T KOG2908|consen 178 RHALL 182 (380)
T ss_pred HHHHH
Confidence 77665
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=94.27 E-value=2.7 Score=45.62 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=47.4
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
++..+++.|++++|...+++..+.-. +| .+++..=-.+|...+++.++...|.++.....
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-----~~-------~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-----KD-------SEALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 37889999999999999988887621 22 34555556788899999999999999987654
No 43
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.22 E-value=0.99 Score=39.96 Aligned_cols=66 Identities=15% Similarity=0.197 Sum_probs=47.6
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
+=-=.++|||++.++.|++++|+.+++.+..+ += .+. +--+-=.++.+.+|-..+|.+|.+|...-
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-------~w---~~~---~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEE-------SW---AAI---VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-------cH---HHH---HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 33345679999999999999999998877654 10 111 11122245668899999999999998875
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.15 E-value=0.51 Score=42.07 Aligned_cols=91 Identities=11% Similarity=0.199 Sum_probs=53.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
.+|.++.+.|+..+|...+++..+.-+. |. ++..--+-++...++..++++++....... +. |.
T Consensus 151 ~~a~~~~~~G~~~~A~~~~~~al~~~P~----~~--------~~~~~l~~~li~~~~~~~~~~~l~~~~~~~---~~~~~ 215 (280)
T PF13429_consen 151 ALAEIYEQLGDPDKALRDYRKALELDPD----DP--------DARNALAWLLIDMGDYDEAREALKRLLKAA---PDDPD 215 (280)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHH-TT-----H--------HHHHHHHHHHCTTCHHHHHHHHHHHHHHH----HTSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC----CH--------HHHHHHHHHHHHCCChHHHHHHHHHHHHHC---cCHHH
Confidence 5677777777777777777666665221 11 112222334456677777777777766554 22 44
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
+...+ |..++.-|+++.|..+|-++.+
T Consensus 216 ~~~~l----a~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 216 LWDAL----AAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HCHHH----HHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHH----HHHhcccccccccccccccccc
Confidence 43333 5566677778888888777776
No 45
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.10 E-value=0.14 Score=32.21 Aligned_cols=29 Identities=24% Similarity=0.544 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
|+.+|+.+|.+.|+++++.++|++.+..-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 68899999999999999999999988655
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=94.01 E-value=2 Score=40.96 Aligned_cols=143 Identities=10% Similarity=0.071 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
......++..+.+.|+++++.+.+.+.+.-. ++-... .-..++.+...- ++ +. ....+.+..+++...++.
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~-~~~~l~~~~~l~---~~-~~---~~~~~~~e~~lk~~p~~~ 333 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAI-SLPLCLPIPRLK---PE-DN---EKLEKLIEKQAKNVDDKP 333 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccc-hhHHHHHhhhcC---CC-Ch---HHHHHHHHHHHHhCCCCh
Confidence 3455667889999999999999999888855 431110 001333322211 22 22 233444444444333333
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
- +....-++.+++..|+|++|.+-++.....=..+ |+ |+++-=..++..+++..+++..|++++...+
T Consensus 334 ~-~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p---~~--------~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~ 401 (409)
T TIGR00540 334 K-CCINRALGQLLMKHGEFIEAADAFKNVAACKEQL---DA--------NDLAMAADAFDQAGDKAEAAAMRQDSLGLML 401 (409)
T ss_pred h-HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC---CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 2 3344578999999999999998887433321122 22 2233337788899999999999999999999
Q ss_pred cCCc
Q 025427 170 AIPH 173 (253)
Q Consensus 170 aI~~ 173 (253)
+++.
T Consensus 402 ~~~~ 405 (409)
T TIGR00540 402 AIQD 405 (409)
T ss_pred cccc
Confidence 9886
No 47
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.88 E-value=3.8 Score=35.25 Aligned_cols=142 Identities=12% Similarity=0.215 Sum_probs=84.2
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHH--hcC--CCCcchhHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDF--VSG--SASQNFSLLREFYQTTL 79 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~--~s~--~~~~~~~~l~~~y~~~~ 79 (253)
+.++|.-+|.-.++..+++.|+++++...+++++... |.-+...-+--+..+... ... ..+.+.....+-+..+.
T Consensus 36 P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~ 114 (203)
T PF13525_consen 36 PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFE 114 (203)
T ss_dssp TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHH
Confidence 3578999999999999999999999999999999877 754432111111111110 000 00122334445555555
Q ss_pred HHHHHhh--------hhh-hHHHHhh-----hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHH
Q 025427 80 KALEEAK--------NER-LWFKTNL-----KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 145 (253)
Q Consensus 80 e~i~~a~--------~er-l~lk~~l-----kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~ 145 (253)
+.++.-. ..+ ..+|..| ..|+.|+..|.|..|..-.+.+.+.-+. ....=|...+=.
T Consensus 115 ~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~---------t~~~~~al~~l~ 185 (203)
T PF13525_consen 115 ELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD---------TPAAEEALARLA 185 (203)
T ss_dssp HHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT---------SHHHHHHHHHHH
T ss_pred HHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---------CchHHHHHHHHH
Confidence 5555211 122 3444444 7899999999999998777777766432 334445666666
Q ss_pred HHHHhhcCHH
Q 025427 146 QMYTETKNNK 155 (253)
Q Consensus 146 ~~y~~~~n~~ 155 (253)
+.|.+++...
T Consensus 186 ~~y~~l~~~~ 195 (203)
T PF13525_consen 186 EAYYKLGLKQ 195 (203)
T ss_dssp HHHHHTT-HH
T ss_pred HHHHHhCChH
Confidence 7777777655
No 48
>PRK14574 hmsH outer membrane protein; Provisional
Probab=93.81 E-value=3.6 Score=43.49 Aligned_cols=162 Identities=7% Similarity=0.012 Sum_probs=100.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHH
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFK 93 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk 93 (253)
.--+-+.+++|+++++++.+++.+..- |.=+. .+..++-..... +.. ++....+..++ ..+..+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~-----av~dll~l~~~~-G~~----~~A~~~~eka~---~p~n~~~~ 103 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG-PLQSG-----QVDDWLQIAGWA-GRD----QEVIDVYERYQ---SSMNISSR 103 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchh-----hHHHHHHHHHHc-CCc----HHHHHHHHHhc---cCCCCCHH
Confidence 344567889999999999999998776 54221 111333333322 222 23334455444 12235666
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..+-+|.++...|+|++|.++.+++.+.=+. + .+++......|...++..++...+.++....-....
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~-----n-------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~ 171 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPT-----N-------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN 171 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----C-------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH
Confidence 6666799999999999999999999887211 1 233334488888889999888888887665444222
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
- ++.+-...| .+++.+|...+-++.+.+
T Consensus 172 ~--l~layL~~~-----~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 172 Y--MTLSYLNRA-----TDRNYDALQASSEAVRLA 199 (822)
T ss_pred H--HHHHHHHHh-----cchHHHHHHHHHHHHHhC
Confidence 2 333333222 334434888877777754
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.73 E-value=0.5 Score=36.91 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=70.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++..++..|+|.+|...++.+...-. ++ .+++..=.+.+...+|++++...|.++......-+.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~- 86 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDP-----YN-------SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPR- 86 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChH-
Confidence 45889999999999999999988877521 12 244555567788889999999999998876433222
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
. ..--|..+...|||+.|...|-++.+-.
T Consensus 87 -~----~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 87 -P----YFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred -H----HHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 1 1233566777899999999998888854
No 50
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.56 E-value=0.99 Score=32.92 Aligned_cols=55 Identities=16% Similarity=0.287 Sum_probs=42.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
.+|..|+..|+|.+|.++++. .+. ++ ++ ++++.+=.+.+..++++.++...|.+|
T Consensus 30 ~la~~~~~~~~y~~A~~~~~~-~~~-------~~---~~--~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 30 NLAQCYFQQGKYEEAIELLQK-LKL-------DP---SN--PDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTTHHHHHHHHHHC-HTH-------HH---CH--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH-hCC-------CC---CC--HHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 589999999999999999988 222 22 11 444555589999999999999998875
No 51
>PRK11189 lipoprotein NlpI; Provisional
Probab=93.56 E-value=5.7 Score=36.19 Aligned_cols=130 Identities=14% Similarity=0.140 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
..-..+.+++.++.+.|+++++...|++.+..- |.-+.++..... .+....+ .+.-++....+++-..+
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~-----~~~~~g~-----~~~A~~~~~~Al~l~P~ 130 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGI-----YLTQAGN-----FDAAYEAFDSVLELDPT 130 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH-----HHHHCCC-----HHHHHHHHHHHHHhCCC
Confidence 345667788999999999999999999999887 766554433332 2221111 11223334444442222
Q ss_pred -hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 88 -ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 88 -erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
...| ..++.+++..|+|++|.+.++...+.-+ +|..+ .+=..++...++..++...+.++.
T Consensus 131 ~~~a~----~~lg~~l~~~g~~~eA~~~~~~al~~~P-----~~~~~--------~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 131 YNYAY----LNRGIALYYGGRYELAQDDLLAFYQDDP-----NDPYR--------ALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred CHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CCHHH--------HHHHHHHHccCCHHHHHHHHHHHH
Confidence 2233 5789999999999999988888876522 23211 111112233456777777775543
No 52
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=93.53 E-value=3.2 Score=33.21 Aligned_cols=82 Identities=16% Similarity=0.313 Sum_probs=60.9
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
+.|+..-.+++..+++.|++++|..+.+.+...=+- |+ +.|..=++.|...+|...+.+.|...++.-
T Consensus 59 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E--------~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 59 ELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----DE--------EAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----H--------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----CH--------HHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 466776679999999999999999999988887221 33 578888999999999999999999987643
Q ss_pred c---cCC-chhHHHHHHh
Q 025427 169 S---AIP-HPRIMGIIRE 182 (253)
Q Consensus 169 ~---aI~-~P~i~g~I~e 182 (253)
. .|. .|.+++..++
T Consensus 127 ~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 127 REELGIEPSPETRALYRE 144 (146)
T ss_dssp HHHHS----HHHHHHHHH
T ss_pred HHHhCcCcCHHHHHHHHH
Confidence 3 354 4888776654
No 53
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=93.29 E-value=1.9 Score=40.64 Aligned_cols=28 Identities=14% Similarity=0.217 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
++..+.-.+..|++++++++|++.+..-
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~ 32 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLD 32 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4556777778888888888888777665
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.29 E-value=9.4 Score=38.98 Aligned_cols=93 Identities=12% Similarity=0.082 Sum_probs=56.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHH----HHHHHHHHHhhhccCC
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK----LKQLYQKALAIKSAIP 172 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~k----lk~~y~~a~~~~~aI~ 172 (253)
.++..+.+.|++++|...+++..+.- + ++ .+++..=-.+|...+++.. +.+.|.++..+.-.
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~--p---~~-------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-- 282 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG--L---DG-------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-- 282 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--C---CC-------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC--
Confidence 34667778888888877777766541 1 11 2333334455666676663 56677776664321
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|.+. ..=|.++...++|+.|..+|-++.+.
T Consensus 283 ~~~a~----~~lg~~l~~~g~~~eA~~~l~~al~l 313 (656)
T PRK15174 283 NVRIV----TLYADALIRTGQNEKAIPLLQQSLAT 313 (656)
T ss_pred CHHHH----HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 13222 22266777788888888888777764
No 55
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.27 E-value=0.42 Score=34.92 Aligned_cols=84 Identities=18% Similarity=0.141 Sum_probs=57.0
Q ss_pred hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhh
Q 025427 104 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 183 (253)
Q Consensus 104 ~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~ 183 (253)
|.|+|++|+.+.+.+.+.-+. +.--++...-.+.|+..+++.++-..+.+ .... |.. ..+...
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~----------~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-----~~~-~~~~~l 63 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT----------NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-----PSN-PDIHYL 63 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG----------THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-----HCH-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC----------ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-----CCC-HHHHHH
Confidence 578999999999999998432 11122344468899999999999888877 2222 211 222223
Q ss_pred ccccccccccHHHHHHHHHHH
Q 025427 184 GGKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 184 ~Gkl~~~ekdy~tA~s~F~EA 204 (253)
-|.-+..-++|+.|...|-+|
T Consensus 64 ~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 64 LARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHhcC
Confidence 378888999999999988764
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=93.27 E-value=4.2 Score=36.89 Aligned_cols=161 Identities=8% Similarity=-0.036 Sum_probs=97.0
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCC--CCcchhHHHHHHHHHHHHHH-HhhhhhhHHH
Q 025427 17 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS--ASQNFSLLREFYQTTLKALE-EAKNERLWFK 93 (253)
Q Consensus 17 ~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~--~~~~~~~l~~~y~~~~e~i~-~a~~erl~lk 93 (253)
+-++...|+++++.+.+++.+... |.-.. ..+..+..+... .+. . ....+.++ +........-
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~-----a~~~~~~~~~~~~~~~~-~-------~~~~~~l~~~~~~~~~~~~ 115 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLL-----ALKLHLGAFGLGDFSGM-R-------DHVARVLPLWAPENPDYWY 115 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHH-----HHHHhHHHHHhcccccC-c-------hhHHHHHhccCcCCCCcHH
Confidence 456777889999888888888776 53221 111011111100 111 1 11222222 1111112222
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
....++.++...|++++|....++..+.-+ ++ ..++..-..+|...+++.++.+.+.++....-. +
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~ 181 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNP-----DD-------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--S 181 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC-------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--C
Confidence 223678899999999999998888877621 12 344555588889999999999999998765432 3
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHh
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAF 205 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAF 205 (253)
|......-..=|.++...|+++.|...|=++.
T Consensus 182 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 182 SMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 44333333344667889999999998887774
No 57
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=93.21 E-value=9.4 Score=38.97 Aligned_cols=92 Identities=15% Similarity=0.218 Sum_probs=67.0
Q ss_pred hHHHHHhhhcchhH----HHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 97 KLCKIWFDMGEYGR----MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 97 kLa~l~l~~~~y~~----a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
.++.+|...|++.+ |....+...+.-+ ++ .+++..-..++...+++.++...|+.++...-.
T Consensus 251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-----~~-------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-- 316 (656)
T PRK15174 251 SLGLAYYQSGRSREAKLQAAEHWRHALQFNS-----DN-------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-- 316 (656)
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--
Confidence 68999999999996 5666666665421 12 356666788899999999999999998875322
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
+|.+.. .=|.++...|+|+.|...|-++.+
T Consensus 317 ~~~a~~----~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 317 LPYVRA----MYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred CHHHHH----HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 243332 236777888999999998876665
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=93.11 E-value=5.1 Score=41.59 Aligned_cols=174 Identities=10% Similarity=0.007 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.|+..|+.+..+.|++|++..++..++++- |....+...-+. +|-... -+++-...+...++-+.+..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~--~L~~~~--------~~eeA~~~~~~~l~~~p~~~- 154 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLR--GVKRQQ--------GIEAGRAEIELYFSGGSSSA- 154 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHH--HHHHhc--------cHHHHHHHHHHHhhcCCCCH-
Confidence 577788888888888888888888888888 765544433321 111111 12223334444443322222
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.....+|.++-+.|+|++|..+.+++.. ..+ |+ -+.+.-=-..+..++....+.++|.+|.+....
T Consensus 155 --~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p---~~-------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 155 --REILLEAKSWDEIGQSEQADACFERLSR--QHP---EF-------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred --HHHHHHHHHHHHhcchHHHHHHHHHHHh--cCC---Cc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 2334678888889999999888888887 232 22 012222233445668888888888888776554
Q ss_pred CCc--hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cChhhHHHHHHHHH
Q 025427 171 IPH--PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYGFY 225 (253)
Q Consensus 171 I~~--P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~~~a~~~LKYlvL 225 (253)
=.- -+..+.| -+--.|++-|+.=-+. |-+-+|-++|-|+|
T Consensus 221 ~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (694)
T PRK15179 221 GARKLTRRLVDL---------------NADLAALRRLGVEGDGRDVPVSILVLEKMLQ 263 (694)
T ss_pred chHHHHHHHHHH---------------HHHHHHHHHcCcccccCCCceeeeeHHHHHH
Confidence 111 1111111 1223577777755443 66788888888776
No 59
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.76 E-value=0.81 Score=41.52 Aligned_cols=119 Identities=19% Similarity=0.189 Sum_probs=88.0
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
.--++++-|+-=|++.|++..|..-|++.++. |- +. ...|+.-.-+|..++.+..+...|++|+++..
T Consensus 33 ~aa~arlqLal~YL~~gd~~~A~~nlekAL~~-------DP---s~--~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p 100 (250)
T COG3063 33 EAAKARLQLALGYLQQGDYAQAKKNLEKALEH-------DP---SY--YLAHLVRAHYYQKLGENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------Cc---cc--HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC
Confidence 66788899999999999999999888888877 32 22 24577777889999999999999999988653
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHh
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLL 229 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL 229 (253)
. .|.|---=|-..|..|.|++|..+|-+|... .. =+..-.++--+.+|.+=
T Consensus 101 ~------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~--P~-Y~~~s~t~eN~G~Cal~ 151 (250)
T COG3063 101 N------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD--PA-YGEPSDTLENLGLCALK 151 (250)
T ss_pred C------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC--CC-CCCcchhhhhhHHHHhh
Confidence 3 3333333344556777999999999999872 22 12334455667777773
No 60
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=92.69 E-value=9.6 Score=36.41 Aligned_cols=157 Identities=17% Similarity=0.195 Sum_probs=100.9
Q ss_pred chhHHHHHHHHHHHHHHHhh--hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHc-ccCCCCchhhhcchHHHHHHH
Q 025427 67 NFSLLREFYQTTLKALEEAK--NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC-QREDGTDDQKKGSQLLEVYAI 143 (253)
Q Consensus 67 ~~~~l~~~y~~~~e~i~~a~--~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l-~~~~~~dD~~kk~~LlEv~~l 143 (253)
+.++....++.|++-|+.-. .+-=-.-.++.||++|=..+++..|-..+..+-..- .+. -| -.+.+..+.=
T Consensus 76 ~~e~~Kei~~~~l~~iq~rvisfeEqv~~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~---~d---~~~kl~l~ir 149 (399)
T KOG1497|consen 76 EDELRKEISHFTLEKIQPRVISFEEQVASIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKA---YD---VEQKLLLCIR 149 (399)
T ss_pred CHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcccchhh---hh---hHHHHHHHHH
Confidence 45677777777777766322 222334567799999999999999987776654432 111 12 3455555555
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHh-hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHH
Q 025427 144 EIQMYTETKNNKKLKQLYQKALA-IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 222 (253)
Q Consensus 144 E~~~y~~~~n~~klk~~y~~a~~-~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKY 222 (253)
=-++|-..++...+-+.-..|.- .+++ ..|.+|=..+.|-..+.=..|.|-.|-..+||=- .+.-.....+..+|+-
T Consensus 150 iarlyLe~~d~veae~~inRaSil~a~~-~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels-~~ki~~e~~~~~aL~~ 227 (399)
T KOG1497|consen 150 IARLYLEDDDKVEAEAYINRASILQAES-SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS-QRKIVDESERLEALKK 227 (399)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhhhcc-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcchHHHHHHHHH
Confidence 56777777776665554444433 3333 5699999999998877766666655555555421 1222234689999999
Q ss_pred HHHHHHhcc
Q 025427 223 GFYLHLLFL 231 (253)
Q Consensus 223 lvL~~iL~~ 231 (253)
.+-|-+|..
T Consensus 228 a~~CtlLA~ 236 (399)
T KOG1497|consen 228 ALQCTLLAS 236 (399)
T ss_pred hHhheeecC
Confidence 999998865
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=92.66 E-value=9.4 Score=36.55 Aligned_cols=169 Identities=15% Similarity=0.185 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
.-+|.+---|+.++++.|..|.+...-+.+..- |+.|-+.-.-.+-.+=..+.. ..++.+--++....++
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~-----aGl~DRAE~~f~~L~d--- 135 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMA-----AGLLDRAEDIFNQLVD--- 135 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHH-----hhhhhHHHHHHHHHhc---
Confidence 346677777888888888888877777666532 333322222222222222221 1122222233333222
Q ss_pred hhhhHHHHhh-hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 87 NERLWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 87 ~erl~lk~~l-kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
+.-|=..-+ .|..+|=..+++.+|++.-.+|.+. +++..+..+-..|--=.+-+..-+|..+++..+.+|.
T Consensus 136 -e~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-------~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl 207 (389)
T COG2956 136 -EGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL-------GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL 207 (389)
T ss_pred -chhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-------CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 122222333 6888999999999999988888877 4533344444444444455566678999999999988
Q ss_pred hhhc-cCCchhHHHHHHhhccccccccccHHHHHHH
Q 025427 166 AIKS-AIPHPRIMGIIRECGGKMHMAERQWADAATD 200 (253)
Q Consensus 166 ~~~~-aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~ 200 (253)
+..- .+--.-+. |.+++..|||..|-..
T Consensus 208 qa~~~cvRAsi~l-------G~v~~~~g~y~~AV~~ 236 (389)
T COG2956 208 QADKKCVRASIIL-------GRVELAKGDYQKAVEA 236 (389)
T ss_pred hhCccceehhhhh-------hHHHHhccchHHHHHH
Confidence 7432 22223333 6667788889888643
No 62
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=92.59 E-value=1.9 Score=32.12 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=52.4
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
-...+.++.+++..|+|++|...++++.+..+. .....+++...-.++..+++..++...|..+...
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---------SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---------CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 344567999999999999999999999887432 2233456667777888999999999999888765
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=92.25 E-value=8 Score=41.42 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=75.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.||+-|+..|+|..+..+-...-..- +- ++..-|-+=.=-+.||+++|+.++...|..|+..++.=+.--.
T Consensus 275 ~LAn~fyfK~dy~~v~~la~~ai~~t------~~---~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 275 HLANHFYFKKDYERVWHLAEHAIKNT------EN---KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhh------hh---hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 89999999999999988876665552 22 4555565666679999999999999999999998888644223
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
+|+ |.|++.++|++.|--.|.-=.+.+
T Consensus 346 ~Gl-----gQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 346 VGL-----GQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred cch-----hHHHHHhchHHHHHHHHHHHHHhC
Confidence 343 778999999999988776555544
No 64
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.04 E-value=7.1 Score=39.19 Aligned_cols=153 Identities=16% Similarity=0.159 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh----hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR----NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k----a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
.+++-+-.-.|+++++++-+..++... ...|+ .+.+--|--++-.++.+ ..+.+..-.-+.++.+....+.
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~-~r~p~~~Llr~~~~~ih~LlGlys~s----v~~~enAe~hf~~a~k~t~~~d 401 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWC-TRFPTPLLLRAHEAQIHMLLGLYSHS----VNCYENAEFHFIEATKLTESID 401 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHH-HhCCchHHHHHhHHHHHHHHhhHhhh----cchHHHHHHHHHHHHHhhhHHH
Confidence 344444556677777777777777776 43332 12233344444444432 2233333345555555554556
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE--VYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlE--v~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
+|.=.++.+|..|+..|+-....++++.+--.=+.. - .++-+| ++.+---..+.++++.++|..+...++.
T Consensus 402 l~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s----~---ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm 474 (629)
T KOG2300|consen 402 LQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNS----L---SSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM 474 (629)
T ss_pred HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCc----c---hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 999999999999998777555444433332110111 0 222222 2222222346678999999999999999
Q ss_pred hccCCchhHHH
Q 025427 168 KSAIPHPRIMG 178 (253)
Q Consensus 168 ~~aI~~P~i~g 178 (253)
+|+----|+.|
T Consensus 475 anaed~~rL~a 485 (629)
T KOG2300|consen 475 ANAEDLNRLTA 485 (629)
T ss_pred cchhhHHHHHH
Confidence 99843334333
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=91.85 E-value=1.6 Score=41.11 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=73.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
+.|.-.+..|+|.+|+...++..+.-. ++ .+++..-..+|..++++..+...+.+|..+.... |.
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P-----~~-------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~--~~- 71 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDP-----NN-------AELYADRAQANIKLGNFTEAVADANKAIELDPSL--AK- 71 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--HH-
Confidence 678889999999999999998887621 11 3567777889999999999999999998875432 22
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
....-|.++...|+|+.|..+|-+|.+
T Consensus 72 ---a~~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 72 ---AYLRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred ---HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223347888899999999999999887
No 66
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.81 E-value=18 Score=37.53 Aligned_cols=194 Identities=12% Similarity=0.057 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh------hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR------NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k------a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
.++..++.++..+|+++++.+.+.+.+... ..... +... .....+..-. +. .+.-.+.+.+.++-
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~-~~la~~~~~~---G~----~~~A~~~~~~al~~ 602 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLI-EEQHLEQLPMHEFLL-RIRAQLLWEW---AR----LDEAEQCARKGLEV 602 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhccccccHHHHHH-HHHHHHHHHh---cC----HHHHHHHHHHhHHh
Confidence 355666777777777777777777777665 22110 1110 0111111111 10 11222223333222
Q ss_pred hhh--hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCC--------------------C-------------c
Q 025427 85 AKN--ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG--------------------T-------------D 129 (253)
Q Consensus 85 a~~--erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~--------------------~-------------d 129 (253)
... ..........++.++...|++.+|...+.+.......... . .
T Consensus 603 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~ 682 (903)
T PRK04841 603 LSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP 682 (903)
T ss_pred hhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC
Confidence 111 1112223336788888888888887777666543221100 0 0
Q ss_pred hhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 130 DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 130 D~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
+........+....-..++...++..++.+.|.+++........+.-.+.+...-|..+...|+++.|...|-+|.+-+.
T Consensus 683 ~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~ 762 (903)
T PRK04841 683 EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN 762 (903)
T ss_pred CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 00001112233455666788889999999999999998777666777778888889999999999999999999999887
Q ss_pred cccC
Q 025427 210 EAGN 213 (253)
Q Consensus 210 e~g~ 213 (253)
..|-
T Consensus 763 ~~g~ 766 (903)
T PRK04841 763 RTGF 766 (903)
T ss_pred ccch
Confidence 7665
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=91.40 E-value=5.4 Score=30.90 Aligned_cols=98 Identities=14% Similarity=0.189 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-hh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ER 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~-er 89 (253)
.++..++..+++.|+++++.+.++.+.+.- |.-+... ..+-..+.. ...++-+.+.++.+-. ..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~-----~~la~~~~~---------~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYW-----LGLAACCQM---------LKEYEEAIDAYALAAALDP 82 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHH-----HHHHHHHHH---------HHHHHHHHHHHHHHHhcCC
Confidence 457788999999999999999999988876 5433222 222221110 1112333333332211 11
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
........++.++...|++++|...++...+..+
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2233335789999999999999999998888753
No 68
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=91.28 E-value=0.65 Score=32.06 Aligned_cols=56 Identities=14% Similarity=0.226 Sum_probs=43.2
Q ss_pred HhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 102 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 102 ~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+++.|+|++|..+++++.+.-+. -.++...=.++|.+.+++.++++.+.++.....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPD------------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTT------------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred ChhccCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 47899999999999999888332 235666778889999999999999887665443
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=91.25 E-value=5.8 Score=35.25 Aligned_cols=165 Identities=19% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-h
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-R 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e-r 89 (253)
..+...+.++...++++++.+.+.++.... ..+.+ .......-..... .|. ...-.....++++-..++ .
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~--~~~~~--~~~~~~~a~~~~~-~G~----~~~A~~~~~~al~~~P~~~~ 181 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEELP--AAPDS--ARFWLALAEIYEQ-LGD----PDKALRDYRKALELDPDDPD 181 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-T-----T---HHHHHHHHHHHHH-CCH----HHHHHHHHHHHHHH-TT-HH
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHhcc--CCCCC--HHHHHHHHHHHHH-cCC----HHHHHHHHHHHHHcCCCCHH
Confidence 345667788899999999999998877533 22221 1222111111111 221 124446666666654443 2
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
++ ..++.++++.|++.++.++++.+.+..+. | . .+.+.+ ..+|..+++.+++-..|.++.+..-
T Consensus 182 ~~----~~l~~~li~~~~~~~~~~~l~~~~~~~~~-----~---~-~~~~~l---a~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 182 AR----NALAWLLIDMGDYDEAREALKRLLKAAPD-----D---P-DLWDAL---AAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HH----HHHHHHHCTTCHHHHHHHHHHHHHHH-HT-----S---C-CHCHHH---HHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HH----HHHHHHHHHCCChHHHHHHHHHHHHHCcC-----H---H-HHHHHH---HHHhccccccccccccccccccccc
Confidence 32 25788899999999999999998888622 2 1 222333 6678889999999999999998653
Q ss_pred c-CCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 170 A-IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 170 a-I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. ..--...|.+- ...|+++.|.....++++.
T Consensus 246 ~d~~~~~~~a~~l-------~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 246 DDPLWLLAYADAL-------EQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp T-HHHHHHHHHHH-------T------------------
T ss_pred ccccccccccccc-------ccccccccccccccccccc
Confidence 2 11123344444 4455667777777666653
No 70
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=91.12 E-value=1.7 Score=30.06 Aligned_cols=59 Identities=19% Similarity=0.291 Sum_probs=45.9
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAI 167 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~-n~~klk~~y~~a~~~ 167 (253)
.++..+++.|+|++|+...++..+..+. + .+++.-=..+|..++ +..++...+.+|+++
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~-----~-------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPN-----N-------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTT-----H-------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 6788889999999998888888877221 1 347777788888888 688888888888765
No 71
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.12 E-value=13 Score=37.79 Aligned_cols=91 Identities=12% Similarity=0.019 Sum_probs=56.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
-++..|...|++++|..+.+++.+.=-.+ |. -.|..=+..|...+++.++++++....+.........-
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M~~~g~~p---d~--------~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~ 363 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEMRDSGVSI---DQ--------FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC---CH--------HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeeh
Confidence 57888899999999999999887652222 22 13455566677777777777777776554322111233
Q ss_pred HHHHHhhccccccccccHHHHHHHHHH
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFE 203 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~E 203 (253)
.+.|+. |+..|+++.|..-|-+
T Consensus 364 ~~Li~~-----y~k~G~~~~A~~vf~~ 385 (697)
T PLN03081 364 TALVDL-----YSKWGRMEDARNVFDR 385 (697)
T ss_pred HHHHHH-----HHHCCCHHHHHHHHHh
Confidence 444444 3455666666666544
No 72
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.06 E-value=18 Score=36.40 Aligned_cols=168 Identities=12% Similarity=0.083 Sum_probs=112.0
Q ss_pred hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH---h-hhhhhHHHHhhhHHHHHh-hhcchhHHHHHHHHHHHH
Q 025427 47 NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE---A-KNERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKS 121 (253)
Q Consensus 47 a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~---a-~~erl~lk~~lkLa~l~l-~~~~y~~a~~li~~L~~~ 121 (253)
...++++=.+-|++..+...+. ..|..|++. . -..+.=-|++|+|+.+++ -.++++-|..=++.-.-.
T Consensus 4 dAva~aLlGlAe~~rt~~PPkI-------kk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i 76 (629)
T KOG2300|consen 4 DAVAEALLGLAEHFRTSGPPKI-------KKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLI 76 (629)
T ss_pred hHHHHHHHHHHHHHhhcCChhH-------HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3456667777777765432122 456666653 1 134566789999999877 467788787666665555
Q ss_pred cccCCCCchhhhcchHHHHHHHHHHHHHhhc-CHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHH
Q 025427 122 CQREDGTDDQKKGSQLLEVYAIEIQMYTETK-NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATD 200 (253)
Q Consensus 122 l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~-n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~ 200 (253)
.+..+...| .-.+-+++=++.|+.+. +.+-+|+.+++|.+++.++| ....-+..+=..+|.-++||..|.+-
T Consensus 77 ~~~ip~fyd-----vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p--~wsckllfQLaql~~idkD~~sA~el 149 (629)
T KOG2300|consen 77 SKSIPSFYD-----VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVP--YWSCKLLFQLAQLHIIDKDFPSALEL 149 (629)
T ss_pred HcccccHHh-----hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCc--hhhHHHHHHHHHHHhhhccchhHHHH
Confidence 555554433 23567888889998887 99999999999999988876 33333333444568899999999998
Q ss_pred HHHHhcccccccChhhHHHHHHHHHHHHh
Q 025427 201 FFEAFKNYDEAGNQRRIQCLKYGFYLHLL 229 (253)
Q Consensus 201 F~EAFe~yde~g~~~a~~~LKYlvL~~iL 229 (253)
.=-.|+.-|..+.| =.++++-+....+|
T Consensus 150 Lavga~sAd~~~~~-ylr~~ftls~~~ll 177 (629)
T KOG2300|consen 150 LAVGAESADHICFP-YLRMLFTLSMLMLL 177 (629)
T ss_pred HhccccccchhhhH-HHHHHHHHHHHHHH
Confidence 77777777776654 23444444444444
No 73
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=90.99 E-value=10 Score=36.95 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-|.+..+++++++.++++.+-+.+..+-.= ...-|....++|.....++.+.|+ .++...+.++.+...+ .
T Consensus 51 ~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskk--rgqlk~ai~~Mvq~~~~y~~~~~d--~~~k~~li~tLr~Vte----g 122 (439)
T KOG1498|consen 51 NTKVLEEIMKLCFSAKDWDLLNEQIRLLSKK--RGQLKQAIQSMVQQAMTYIDGTPD--LETKIKLIETLRTVTE----G 122 (439)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHhccCCCC--chhHHHHHHHHHHhhc----C
Confidence 4577889999999999999998877654322 234466788999999999998886 4455666666655432 2
Q ss_pred hhHH---HHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 89 RLWF---KTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 89 rl~l---k~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
++|+ |.++ -|+..+=+.|+..+|.+++.++.-+- -..+.++--++.++-+++++-..+|+-++--+-
T Consensus 123 kIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VET------ygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~s 194 (439)
T KOG1498|consen 123 KIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVET------YGSMEKSEKVAFILEQMRLCLLRLDYVRAQIIS 194 (439)
T ss_pred ceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhh------hhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3443 3445 67888899999999999999998773 234447778888888999998888887655443
No 74
>PLN03077 Protein ECB2; Provisional
Probab=90.96 E-value=14 Score=38.62 Aligned_cols=25 Identities=4% Similarity=-0.015 Sum_probs=20.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
-++..|.+.|++++|.++.+++.+.
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 5788888899999999988888665
No 75
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=90.53 E-value=4.5 Score=36.87 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=76.3
Q ss_pred HHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh-hccCCchhHHH
Q 025427 100 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI-KSAIPHPRIMG 178 (253)
Q Consensus 100 ~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~-~~aI~~P~i~g 178 (253)
.+++..|+|++|....+.+.+.-++ ..+.-+++-.--+.|+..+++..+...|....+. ..+-..|-..
T Consensus 151 ~l~~~~~~y~~Ai~af~~fl~~yP~---------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl- 220 (263)
T PRK10803 151 ALVQDKSRQDDAIVAFQNFVKKYPD---------STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM- 220 (263)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHCcC---------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH-
Confidence 3456779999999888888777432 3445566777788899999999999998877643 2222223322
Q ss_pred HHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHH
Q 025427 179 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYG 223 (253)
Q Consensus 179 ~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYl 223 (253)
-.. |.++..-+|++.|...|-+.-+.|- +++.+..+.++|
T Consensus 221 --~kl-g~~~~~~g~~~~A~~~~~~vi~~yP--~s~~a~~A~~rL 260 (263)
T PRK10803 221 --FKV-GVIMQDKGDTAKAKAVYQQVIKKYP--GTDGAKQAQKRL 260 (263)
T ss_pred --HHH-HHHHHHcCCHHHHHHHHHHHHHHCc--CCHHHHHHHHHH
Confidence 222 3345577999999999999999884 566777776665
No 76
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.32 E-value=4.9 Score=40.18 Aligned_cols=204 Identities=18% Similarity=0.251 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---------Hhhh----------------------hhhhhhhHHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLT---------YIKS----------------------AVTRNYSEKCINNIM 57 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~---------~~~~----------------------~v~ka~~~K~i~~il 57 (253)
.|+|-.+|+-.++--|+.++|.+.+..+.+ |+++ .-.|+-++|.|-+-.
T Consensus 308 n~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~ 387 (840)
T KOG2003|consen 308 NFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAA 387 (840)
T ss_pred cHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 477778888888888888888888877654 2321 123566777776655
Q ss_pred HHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchH
Q 025427 58 DFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL 137 (253)
Q Consensus 58 d~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~L 137 (253)
..++.... ++| -.=++-|+|.++.+..--|-....+..|.-|+..|+++.|.++++-+.+. |..++..-.
T Consensus 388 kiiapvi~--~~f-a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~k-------dnk~~saaa 457 (840)
T KOG2003|consen 388 KIIAPVIA--PDF-AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKK-------DNKTASAAA 457 (840)
T ss_pred HHhccccc--cch-hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhc-------cchhhHHHh
Confidence 55553211 111 12356788877766544466666778999999999999999999888776 331111111
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccccc-------
Q 025427 138 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE------- 210 (253)
Q Consensus 138 lEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde------- 210 (253)
--+ .-......-+++..+.+.-..|+.+. -|.|.-+ ---|-+.+-.||+++|...+-||..|=.+
T Consensus 458 ~nl--~~l~flqggk~~~~aqqyad~aln~d--ryn~~a~----~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn 529 (840)
T KOG2003|consen 458 NNL--CALRFLQGGKDFADAQQYADIALNID--RYNAAAL----TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN 529 (840)
T ss_pred hhh--HHHHHHhcccchhHHHHHHHHHhccc--ccCHHHh----hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH
Confidence 111 11111122356666665555554432 2333211 12355566789999999999999986432
Q ss_pred -------ccC-hhhHHHHHHHHHHHHhccC
Q 025427 211 -------AGN-QRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 211 -------~g~-~~a~~~LKYlvL~~iL~~s 232 (253)
.|+ .+++.| ++-|--||.++
T Consensus 530 iglt~e~~~~ldeald~--f~klh~il~nn 557 (840)
T KOG2003|consen 530 IGLTAEALGNLDEALDC--FLKLHAILLNN 557 (840)
T ss_pred hcccHHHhcCHHHHHHH--HHHHHHHHHhh
Confidence 133 355566 55566666654
No 77
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.31 E-value=0.54 Score=27.76 Aligned_cols=29 Identities=28% Similarity=0.685 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
|+.+++.++.+.|+++++.+.+++++.-.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 78899999999999999999999988755
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=90.12 E-value=7.8 Score=39.42 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=11.0
Q ss_pred HHHHHHHHhCCHHHHHHHHHHH
Q 025427 15 QTVKLYYRLGKYKEMMDAYREM 36 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~l 36 (253)
-++..|++.|+++++++++.++
T Consensus 295 ~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 295 SMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHhCCCHHHHHHHHHHH
Confidence 3444555555555555555444
No 79
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=89.97 E-value=7.6 Score=37.73 Aligned_cols=127 Identities=19% Similarity=0.154 Sum_probs=88.9
Q ss_pred cchhHHHHHHHHHHHHcccCCC-CchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhH-HHHHHh
Q 025427 106 GEYGRMSKILKELHKSCQREDG-TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI-MGIIRE 182 (253)
Q Consensus 106 ~~y~~a~~li~~L~~~l~~~~~-~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i-~g~I~e 182 (253)
.-...|...|...-+.|-.... .....|+.-.+.+--..-++|+.+++..-.+...++.....+.+.. |.- +=+-+=
T Consensus 130 ~~le~~s~~i~~~f~~cl~d~~~~~~~~kk~~~~~i~n~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~~l~~~v~y~Y 209 (394)
T KOG2688|consen 130 QLLEAASRTISRLFSSCLSDRRADLEESKKVAMLYIVNQLFQIYFRIEKLLLCKNLIRAFDQSGSDISDFPLAQLVVYHY 209 (394)
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchhhHHHHHHHHHHHHHHHHhhHHHhHHHHHHhhccccchhhcccccceeeee
Confidence 3466778888888888876522 2346788889999999999999999877666665554444222211 110 000111
Q ss_pred hccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccC
Q 025427 183 CGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 183 ~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s 232 (253)
-=|..+|.+.||..|+-++-|||++=-..--......|.|++=+.|+.+.
T Consensus 210 ylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~iliylip~~~llg~ 259 (394)
T KOG2688|consen 210 YLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLILIYLIPTGLLLGR 259 (394)
T ss_pred eeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhHHHHHhHHHHHhcc
Confidence 12588999999999999999999965432224677799999999999987
No 80
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.87 E-value=15 Score=33.28 Aligned_cols=168 Identities=12% Similarity=0.178 Sum_probs=93.4
Q ss_pred HHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH----HhcCC--CCcchhHHHHHHHHHHHHHH--Hhhhh--hh
Q 025427 21 YRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD----FVSGS--ASQNFSLLREFYQTTLKALE--EAKNE--RL 90 (253)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild----~~s~~--~~~~~~~l~~~y~~~~e~i~--~a~~e--rl 90 (253)
-++|+.+-+...+...-... +..+...++..-+.+.+ .++.. .+....++++-|+++-..-+ ....+ .+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~-~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLL-NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHH-hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46788888888887777766 33443444444333332 22222 11235667777777644211 11112 25
Q ss_pred HHHHhhhHHHHHhhhcchhH---HHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGR---MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~---a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
-+++-.=+|+.|++.+.++. |..+++.+.++..+ -.+++.+-+++..+..+.......+......
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~------------~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN------------KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC------------CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 55555589999999888664 45566666555322 3567888888887777777776666665544
Q ss_pred hc-cCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 168 KS-AIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 168 ~~-aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.+ +-.. ..+...|+... +++-..|...|.+.+-+
T Consensus 151 ~~~~e~~~~~~l~~i~~l~------~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLA------EKSPELAAFCLDYLLLN 186 (278)
T ss_pred cccccchHHHHHHHHHHHH------hhCcHHHHHHHHHHHHH
Confidence 43 2222 55566665533 22334444444444443
No 81
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=89.77 E-value=1.8 Score=30.24 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=48.2
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
|..+|+..++|++|...++.+.+.-+ + -.+.+..--.+|..++++.++...+..+.+..-
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p-----~-------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDP-----D-------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCc-----c-------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46789999999999999999988822 1 245566677888999999999999999886554
No 82
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=89.47 E-value=11 Score=33.81 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=90.6
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
..|..+++.|+|++|.+..+++...-+. +.........-...|++.++++.+...+....+.--.-+. |.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~---------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPF---------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC---------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHH
Confidence 5677889999999999999999886332 3344445566778899999999999999998876555444 53
Q ss_pred ---HHHHHHhhcc------ccc--cccccHH---HHHHHHHHHhcccccccChhhHHHHHHHHHH-HHhccCCCchHHHH
Q 025427 176 ---IMGIIRECGG------KMH--MAERQWA---DAATDFFEAFKNYDEAGNQRRIQCLKYGFYL-HLLFLISIYFLYLY 240 (253)
Q Consensus 176 ---i~g~I~e~~G------kl~--~~ekdy~---tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~-~iL~~s~id~~~~~ 240 (253)
+.|.....-| ... -.++|-. .|...|-+=.+.|- +++-+-.+-++|..+ ..|...+.++-..|
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y 185 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NSQYTTDATKRLVFLKDRLAKYELSVAEYY 185 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4454422222 111 2345555 34466666666663 666677777777666 66777777777777
Q ss_pred HH
Q 025427 241 FL 242 (253)
Q Consensus 241 ~~ 242 (253)
+=
T Consensus 186 ~~ 187 (243)
T PRK10866 186 TK 187 (243)
T ss_pred HH
Confidence 63
No 83
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.39 E-value=15 Score=36.79 Aligned_cols=89 Identities=17% Similarity=0.257 Sum_probs=63.8
Q ss_pred HhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhHHHHH
Q 025427 102 WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGII 180 (253)
Q Consensus 102 ~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i~g~I 180 (253)
+-..|+.++|+...=.||.-+.+. .||..--..+|-.+.|...+-..|-++ .+-||. |.|...+
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn------------~evl~qianiye~led~aqaie~~~q~---~slip~dp~ilskl 598 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNN------------AEVLVQIANIYELLEDPAQAIELLMQA---NSLIPNDPAILSKL 598 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhh------------HHHHHHHHHHHHHhhCHHHHHHHHHHh---cccCCCCHHHHHHH
Confidence 334566666666666666665442 344444455677788888888888765 345787 9988776
Q ss_pred HhhccccccccccHHHHHHHHHHHhcccc
Q 025427 181 RECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 181 ~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
- -+|-.|||=.+|+.+.|+|++-|-
T Consensus 599 ~----dlydqegdksqafq~~ydsyryfp 623 (840)
T KOG2003|consen 599 A----DLYDQEGDKSQAFQCHYDSYRYFP 623 (840)
T ss_pred H----HHhhcccchhhhhhhhhhcccccC
Confidence 4 468899999999999999999885
No 84
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=89.29 E-value=22 Score=38.41 Aligned_cols=93 Identities=6% Similarity=-0.069 Sum_probs=57.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.++.+.|++++|...+++..+.-+ ++ .+++..=.-++...++..++.+.|.+|...... +|
T Consensus 613 ~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~-------~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~--~~- 677 (987)
T PRK09782 613 VARATIYRQRHNVPAAVSDLRAALELEP-----NN-------SNYQAALGYALWDSGDIAQSREMLERAHKGLPD--DP- 677 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CH-
Confidence 4677888888888888877777666621 11 133333344555667777777777777665321 12
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.+..-=|.++...||++.|..+|-.+.+
T Consensus 678 ---~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 678 ---ALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2233345556666777777777777765
No 85
>PRK12370 invasion protein regulator; Provisional
Probab=89.21 E-value=25 Score=34.98 Aligned_cols=94 Identities=9% Similarity=-0.091 Sum_probs=60.4
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.++...|++++|...+++..+.-+. +. +.+..-..+++..+++.++.+.+.++..... -.+|.
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l~P~----~~--------~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~~~ 442 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKLDPT----RA--------AAGITKLWITYYHTGIDDAIRLGDELRSQHL-QDNPI 442 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCC----Ch--------hhHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccCHH
Confidence 46799999999999999998888776221 11 1111122245567889989998888765431 11233
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.. ..-|..+...|++++|...|-+...
T Consensus 443 ~~----~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 443 LL----SMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HH----HHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 22 2235556778999999998755433
No 86
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=88.84 E-value=4.6 Score=32.87 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=70.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
.++..+.+.|+|++|....+.+... . ..-.+++..--.++..++++.++...|.+|......-+. ..
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~---~---------P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~ 96 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA---Q---------PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVY 96 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc---C---------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHH
Confidence 5789999999999999888887654 1 112567777888899999999999999999987654444 23
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
-.|. .+...|+++.|...|-.|-+
T Consensus 97 ~lg~-------~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 97 QTGV-------CLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHH-------HHHHcCCHHHHHHHHHHHHH
Confidence 3443 45567889999999988877
No 87
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=88.31 E-value=1.3 Score=26.24 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+++.+++.++.+.|+++++.+.+++.+..-
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 467899999999999999999999988764
No 88
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=87.96 E-value=10 Score=36.82 Aligned_cols=138 Identities=14% Similarity=0.234 Sum_probs=83.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhh--hhh--hhhhHHHHHHHH-HHhcCCCCcchhHHHHHHHHHHHHHHH-hhh
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKS--AVT--RNYSEKCINNIM-DFVSGSASQNFSLLREFYQTTLKALEE-AKN 87 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~--~v~--ka~~~K~i~~il-d~~s~~~~~~~~~l~~~y~~~~e~i~~-a~~ 87 (253)
|.=+..|++.|+|..+...|+....++.. ..+ -.+..+.++... -+++.+...-.+ -......|..+|+- .+|
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~-~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKE-YKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhh-HHHHHHHHHHHHhcCCCc
Confidence 44566899999999999999999988831 111 122222222222 122221111111 11334455555552 334
Q ss_pred hh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 88 ER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 88 er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
.+ || |.+..++..++|+.|...++..++. ++..+..-.|+..+-.++.- -..|-|..|.....
T Consensus 291 ~KALy-----RrG~A~l~~~e~~~A~~df~ka~k~--------~P~Nka~~~el~~l~~k~~~---~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 291 VKALY-----RRGQALLALGEYDLARDDFQKALKL--------EPSNKAARAELIKLKQKIRE---YEEKEKKMYANMFA 354 (397)
T ss_pred hhHHH-----HHHHHHHhhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhh
Confidence 44 54 8999999999999999988888887 22337777777777666632 34556666766654
Q ss_pred hh
Q 025427 167 IK 168 (253)
Q Consensus 167 ~~ 168 (253)
-.
T Consensus 355 k~ 356 (397)
T KOG0543|consen 355 KL 356 (397)
T ss_pred cc
Confidence 33
No 89
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=87.67 E-value=34 Score=34.61 Aligned_cols=141 Identities=14% Similarity=0.176 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHHHHhh-h----hhhHHHHhhhHHHHHh-hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHH
Q 025427 68 FSLLREFYQTTLKALEEAK-N----ERLWFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY 141 (253)
Q Consensus 68 ~~~l~~~y~~~~e~i~~a~-~----erl~lk~~lkLa~l~l-~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~ 141 (253)
.+--.+++.+...|++-.. + .+.=.++++|+|++|+ +..++++|..-+.+-...|++ ++-+| +-.+..
T Consensus 30 l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~~d-----~k~~~~ 103 (608)
T PF10345_consen 30 LKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRLTD-----LKFRCQ 103 (608)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cchHH-----HHHHHH
Confidence 3334456666677776544 2 3455677889999999 899999999999977777776 33333 224444
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChh
Q 025427 142 AIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR 215 (253)
Q Consensus 142 ~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~ 215 (253)
.+=+++|...+-.. ++..+.++.+-..+-.|.-..=..+...=.+++..+|+..|...+-.....-+..|+|.
T Consensus 104 ~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 104 FLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 45588988887777 88888888776666544322223333322233333899999988877777555567664
No 90
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=87.48 E-value=1.2 Score=29.97 Aligned_cols=27 Identities=22% Similarity=0.546 Sum_probs=24.8
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
++.||..|++.|+++.|.++|+++...
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 578999999999999999999999964
No 91
>PRK14574 hmsH outer membrane protein; Provisional
Probab=87.39 E-value=31 Score=36.60 Aligned_cols=173 Identities=7% Similarity=-0.000 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcC--CCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG--SASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~--~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.+.---.-.+.+.|++.++.+.|+.+..-- ..|| +|+...+ -|.+.. .|. +-..+..+.+......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~-~~~P-~y~~~a~---adayl~~~~P~-------kA~~l~~~~~~~~~~~ 360 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEG-YKMP-DYARRWA---ASAYIDRRLPE-------KAAPILSSLYYSDGKT 360 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcC-CCCC-HHHHHHH---HHHHHhcCCcH-------HHHHHHHHHhhccccc
Confidence 344444445666777888888887777443 3333 3444443 444432 122 2334444444433110
Q ss_pred -hh--HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcc-cC--CCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 89 -RL--WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ-RE--DGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 89 -rl--~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~-~~--~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
.. =+-...+|...|+|.++|++|..+++++.+..+ .. -+..+...+.-=.+.+.++.+.+...+|++++-+.+.
T Consensus 361 ~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le 440 (822)
T PRK14574 361 FRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLE 440 (822)
T ss_pred cCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 011124899999999999999999999998533 00 0111112233345999999999999999999999999
Q ss_pred HHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHH
Q 025427 163 KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDF 201 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F 201 (253)
+....+-+= |-++. .=+-+.+..+...+|...+
T Consensus 441 ~l~~~aP~n--~~l~~----~~A~v~~~Rg~p~~A~~~~ 473 (822)
T PRK14574 441 DLSSTAPAN--QNLRI----ALASIYLARDLPRKAEQEL 473 (822)
T ss_pred HHHHhCCCC--HHHHH----HHHHHHHhcCCHHHHHHHH
Confidence 886554332 33322 2233456777788888877
No 92
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.22 E-value=1.9 Score=25.75 Aligned_cols=30 Identities=27% Similarity=0.485 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+++..++.+|.+.|+++++.+.+++.+.+-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 467889999999999999999999988764
No 93
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=87.16 E-value=25 Score=37.85 Aligned_cols=168 Identities=15% Similarity=0.138 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCC----cchhHHHHHHHHHHHHHHH-h
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS----QNFSLLREFYQTTLKALEE-A 85 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~----~~~~~l~~~y~~~~e~i~~-a 85 (253)
.+..|+++.|-.+|+++++..+|.+.+..- +.- .++-.+.-.+. -+.+-= ..|-|.+-. .
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-~d~----------~~l~~~GlgQm~i~~~dle~s----~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKAD-NDN----------FVLPLVGLGQMYIKRGDLEES----KFCFEKVLKQL 372 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccC-CCC----------ccccccchhHHHHHhchHHHH----HHHHHHHHHhC
Confidence 468899999999999999999998877665 320 12222221000 000000 011111000 0
Q ss_pred hhhhhHHHHhhhHHHHHhhhcc----hhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGE----YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~----y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
.+. ..+.-=|+.||...++ -++|..++....+.. . +| .|-++--.++ ...+|..+.=.+|
T Consensus 373 p~~---~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~----~-~d-------~~a~l~laql-~e~~d~~~sL~~~ 436 (1018)
T KOG2002|consen 373 PNN---YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT----P-VD-------SEAWLELAQL-LEQTDPWASLDAY 436 (1018)
T ss_pred cch---HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc----c-cc-------HHHHHHHHHH-HHhcChHHHHHHH
Confidence 000 1111246777777653 334444444443332 1 22 2223333333 3456777778899
Q ss_pred HHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 162 QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 162 ~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
..|+.+--..-+| |.-++---=|-+|+.-|++..|...|-+|-.--.+
T Consensus 437 ~~A~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 437 GNALDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HHHHHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 9988655554444 44444444578899999999999999999887553
No 94
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.93 E-value=26 Score=37.92 Aligned_cols=94 Identities=10% Similarity=0.080 Sum_probs=70.9
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++.++.+.|++++|...++...+.-+ ++ .+++--=-.++..++++..+...|.+|.... |
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~-------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-----P 708 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKGLP-----DD-------PALIRQLAYVNQRLDDMAATQHYARLVIDDI-----D 708 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----C
Confidence 34788999999999999998888877521 22 2445555567788999999999999998766 3
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
=++.|+..-|.+...+.+|+.|.+...-++.
T Consensus 709 -~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 709 -NQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred -CCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666777777788888888887776665
No 95
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=86.48 E-value=8.4 Score=35.33 Aligned_cols=104 Identities=19% Similarity=0.276 Sum_probs=77.9
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHH
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 177 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~ 177 (253)
+++..+..|+|.+|...++++..-=+ +| =|.+..+=-.|-..++...+|..|.+|+.+.-. .|.+.
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p-----~d-------~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~--~p~~~ 171 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAP-----TD-------WEAWNLLGAALDQLGRFDEARRAYRQALELAPN--EPSIA 171 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCC-----CC-------hhhhhHHHHHHHHccChhHHHHHHHHHHHhccC--Cchhh
Confidence 88899999999999988888776522 23 256677777788999999999999999876533 45555
Q ss_pred HHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHH
Q 025427 178 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 221 (253)
Q Consensus 178 g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LK 221 (253)
+-+ |..++-++|+++|.+++-++.. +...+++-.+-|.
T Consensus 172 nNl----gms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLA 209 (257)
T COG5010 172 NNL----GMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLA 209 (257)
T ss_pred hhH----HHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHH
Confidence 544 4456789999999999999876 3344555555544
No 96
>PLN03077 Protein ECB2; Provisional
Probab=86.45 E-value=37 Score=35.41 Aligned_cols=88 Identities=8% Similarity=0.033 Sum_probs=47.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh-
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR- 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~- 175 (253)
-++..|...|+.++|..+.+++.+.=-++ |. -+ |..=+..|...+++.++...+........-.|.+.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~P---d~---~T-----~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~ 627 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNP---DE---VT-----FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKH 627 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---Cc---cc-----HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHH
Confidence 45566667777777777777666541111 22 22 22223456666777777777766654433334322
Q ss_pred HHHHHHhhccccccccccHHHHHHH
Q 025427 176 IMGIIRECGGKMHMAERQWADAATD 200 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~ 200 (253)
-...|+. +...|++++|..-
T Consensus 628 y~~lv~~-----l~r~G~~~eA~~~ 647 (857)
T PLN03077 628 YACVVDL-----LGRAGKLTEAYNF 647 (857)
T ss_pred HHHHHHH-----HHhCCCHHHHHHH
Confidence 2333443 3466777777644
No 97
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=86.15 E-value=2.7 Score=28.98 Aligned_cols=62 Identities=21% Similarity=0.248 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccc-cHHHHHHHHHHHhc
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFK 206 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ek-dy~tA~s~F~EAFe 206 (253)
+++...-..++..+++.++...|++|.... |.- +.+-.-=|..|+..+ +|+.|..+|-.|.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-----p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-----PNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-----TTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 567788889999999999999999999874 321 223333356677777 89999999887764
No 98
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=85.46 E-value=4.5 Score=39.16 Aligned_cols=130 Identities=15% Similarity=0.109 Sum_probs=90.4
Q ss_pred hhcchhHHHHHHHHHHHHcccCCCC-chhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh----HHH
Q 025427 104 DMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR----IMG 178 (253)
Q Consensus 104 ~~~~y~~a~~li~~L~~~l~~~~~~-dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~----i~g 178 (253)
++...+++..+|......|.+.-+. --+.|+--+.=+--++-++|+++++..-.+..+++. ...+.--+|+ -+=
T Consensus 142 ~~d~l~~~sr~l~R~Fn~il~dR~p~ln~skk~g~y~iaNlL~~iY~Rl~~~~l~~n~lka~-~~vs~~Di~~~~~sq~v 220 (413)
T COG5600 142 NQDNLSKISRLLTRMFNSILNDRSPALNPSKKVGLYYIANLLFQIYLRLGRFKLCENFLKAS-KEVSMPDISEYQKSQVV 220 (413)
T ss_pred hHhhHHHHHHHHHHHHHHhcCCcCccCChhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHhc-ccccccccchhhhccee
Confidence 3455788899999999999875332 125667777778889999999999987666555543 4433322341 112
Q ss_pred HHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCC
Q 025427 179 IIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISI 234 (253)
Q Consensus 179 ~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~i 234 (253)
+-+=-=|+.|+.+.|++.|+-.|-|||-.-...-.-.....+-|++-..++.+--.
T Consensus 221 ~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl~~~ipt~Llv~~~~ 276 (413)
T COG5600 221 VFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRILPYYIPTSLLVNKFP 276 (413)
T ss_pred ehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheehhHHhhHHHHhCCCC
Confidence 22334588899999999999999999975443212245667779999999887544
No 99
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=85.34 E-value=7.8 Score=35.12 Aligned_cols=96 Identities=13% Similarity=0.107 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh-
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER- 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er- 89 (253)
.-|.+=+..+.+.|++..+.++-.-+++.. ..-.....+..+.++++.++..|...++ .......+|+|++...
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~-~~~~~~~~~~~~~rl~~l~~~~~~~~p~----r~~fi~~ai~WS~~~~~ 85 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVY-EKSEDPVDEESIARLIELISLFPPEEPE----RKKFIKAAIKWSKFGSY 85 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTT---SHHHHHHHHHHHHHS-TT-TT----HHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhCCCCcch----HHHHHHHHHHHHccCCC
Confidence 346677888999999999888888777776 4333334555666666666654443332 3367788889984322
Q ss_pred hH--HHHhhhHHHHHhhhcchhHH
Q 025427 90 LW--FKTNLKLCKIWFDMGEYGRM 111 (253)
Q Consensus 90 l~--lk~~lkLa~l~l~~~~y~~a 111 (253)
-+ =...--+|..|...++|.+|
T Consensus 86 ~~Gdp~LH~~~a~~~~~e~~~~~A 109 (260)
T PF04190_consen 86 KFGDPELHHLLAEKLWKEGNYYEA 109 (260)
T ss_dssp TT--HHHHHHHHHHHHHTT-HHHH
T ss_pred CCCCHHHHHHHHHHHHhhccHHHH
Confidence 11 12233778888888888888
No 100
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=85.05 E-value=2.7 Score=25.17 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+++..++.++...|+++++++.+++.+..-
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 467899999999999999999999988764
No 101
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.04 E-value=12 Score=38.31 Aligned_cols=134 Identities=18% Similarity=0.325 Sum_probs=75.3
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 025427 16 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 95 (253)
Q Consensus 16 l~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~ 95 (253)
=++++++.++||++++.|+.+..-- + +.+-+...-+++...+.++. + .++.+..-. +.. .-+-
T Consensus 116 ~AQvlYrl~~ydealdiY~~L~kn~-~---dd~d~~~r~nl~a~~a~l~~----------~-~~q~v~~v~-e~s-yel~ 178 (652)
T KOG2376|consen 116 RAQVLYRLERYDEALDIYQHLAKNN-S---DDQDEERRANLLAVAAALQV----------Q-LLQSVPEVP-EDS-YELL 178 (652)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC-C---chHHHHHHHHHHHHHHhhhH----------H-HHHhccCCC-cch-HHHH
Confidence 3567788899999999988875443 2 23344455555555543321 0 111111000 000 0111
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET---KNNKKLKQLYQKALA 166 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~---~n~~klk~~y~~a~~ 166 (253)
-+.|-.+++.|+|++|+++|..-.+-|.+.=..+|..--..--|+-.+-.|+.+.+ |...++.++|....+
T Consensus 179 yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 179 YNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 16788899999999999999999444433211112111234445555556655544 789999999987543
No 102
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.03 E-value=23 Score=36.91 Aligned_cols=31 Identities=19% Similarity=0.382 Sum_probs=19.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh
Q 025427 15 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR 46 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k 46 (253)
+++-+|..+|..|-+.+.|++.+..- |.++-
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~-P~F~~ 321 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQ-PNFPD 321 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcC-CCchH
Confidence 34556666777777777777766665 55443
No 103
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.81 E-value=1.9 Score=26.53 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=24.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCC
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT 128 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~ 128 (253)
--.+|..|...|+|++|..+.++...-.++.-|.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~ 38 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERLLGP 38 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH------
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcc
Confidence 3489999999999999999999999988877543
No 104
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=84.68 E-value=24 Score=30.33 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
+...++.+|...|+++++.+.|++.+..- +.-+..+..-.. ++ +....... ..+..++..++++-..++
T Consensus 75 ~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~--aL-~~~~g~~~----~~~A~~~l~~al~~dP~~--- 143 (198)
T PRK10370 75 QWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALAT--VL-YYQAGQHM----TPQTREMIDKALALDANE--- 143 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH--HH-HHhcCCCC----cHHHHHHHHHHHHhCCCC---
Confidence 66788999999999999999999999988 653332222221 01 11111100 123334555555433322
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHccc
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 124 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~ 124 (253)
.+....+|..+++.|+|++|....+.+.+....
T Consensus 144 ~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 144 VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 334468899999999999999999999888554
No 105
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.31 E-value=2.7 Score=25.84 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.++..|+..|..+|+++++.+++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 478899999999999999999999998877
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=83.20 E-value=15 Score=33.81 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=74.0
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhhhccCC-c
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAIKSAIP-H 173 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~--n~~klk~~y~~a~~~~~aI~-~ 173 (253)
=.+.+|+..++++-|.+.++.+.+. + || +.+ +.+.|+=+....+ ++..+--.|..... .-+ .
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~----~--eD----~~l--~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~t 200 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQI----D--ED----SIL--TQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGST 200 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCC----S--CC----HHH--HHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS--S
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc----C--Cc----HHH--HHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCCC
Confidence 4667888899999998888777655 1 33 222 3345544554444 57777777777422 211 2
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCchHH
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIYFLY 238 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id~~~ 238 (253)
|.+ --.-+..|+..|+|..|.+..-||.+ .+|+-..+|=.++.|+.+.|.+.+...
T Consensus 201 ~~~----lng~A~~~l~~~~~~eAe~~L~~al~-----~~~~~~d~LaNliv~~~~~gk~~~~~~ 256 (290)
T PF04733_consen 201 PKL----LNGLAVCHLQLGHYEEAEELLEEALE-----KDPNDPDTLANLIVCSLHLGKPTEAAE 256 (290)
T ss_dssp HHH----HHHHHHHHHHCT-HHHHHHHHHHHCC-----C-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHH----HHHHHHHHHHhCCHHHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHhCCChhHHH
Confidence 443 22334567899999999999999876 234445677788999999888755443
No 107
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=83.19 E-value=62 Score=33.65 Aligned_cols=107 Identities=9% Similarity=-0.056 Sum_probs=75.9
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCC---CCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQRED---GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~---~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
...++.++++.|++++|...++++.+.-+... +.-.......-++++.++.+++...++++++.+.+.++....
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~--- 389 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA--- 389 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Confidence 34778888999999999999998887632100 000000012346788899999999999999999999987653
Q ss_pred Cc-hhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 172 PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 172 ~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
|. |. +...=|.++...++++.|...+=++.+-.
T Consensus 390 P~n~~----l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 390 PGNQG----LRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 32 32 33444557788889999999988888744
No 108
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.16 E-value=28 Score=36.25 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---chhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 137 LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 137 LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~---~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.-|-|+----+|..-+|++.+-++|..|+++.-.-| |-+.-..= .-++--||++-....++.-+.-
T Consensus 455 ~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq------~vcdw~D~d~~~~kl~sivrdq 523 (966)
T KOG4626|consen 455 FAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQ------IVCDWTDYDKRMKKLVSIVRDQ 523 (966)
T ss_pred HHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHH------HHhcccchHHHHHHHHHHHHHH
Confidence 345555556677778899999999999999876644 32222111 1234567777777777766543
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=82.91 E-value=14 Score=36.97 Aligned_cols=108 Identities=16% Similarity=0.285 Sum_probs=81.0
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+| +..=+|..|-..|+|++|++.|++-... ..-++|.|.+-.+++-+.||+.++-..+..||..-.
T Consensus 194 lw--~~~~lAqhyd~~g~~~~Al~~Id~aI~h------------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 194 LW--TLYFLAQHYDYLGDYEKALEYIDKAIEH------------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred HH--HHHHHHHHHHHhCCHHHHHHHHHHHHhc------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 55 5557888899999999999999988777 455799999999999999999999999988886533
Q ss_pred c---CCc---------------------------hhHHHHHH-------hhccccccccccHHHHHHHHHHHhcccccc
Q 025427 170 A---IPH---------------------------PRIMGIIR-------ECGGKMHMAERQWADAATDFFEAFKNYDEA 211 (253)
Q Consensus 170 a---I~~---------------------------P~i~g~I~-------e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~ 211 (253)
+ |.+ .-.....+ .-.|.=|..-|||..|...|..-.+.|++-
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDF 338 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 2 110 00111111 113566778899999999999888888865
No 110
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=82.83 E-value=2.9 Score=28.01 Aligned_cols=40 Identities=10% Similarity=0.213 Sum_probs=31.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH
Q 025427 15 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINN 55 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ 55 (253)
.|++.|++.|+.+.+.+.+.+++.-- +.--|..+.+++++
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~-~~~q~~eA~~LL~~ 43 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG-DEAQRQEARALLAQ 43 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-CHHHHHHHHHHHhc
Confidence 68999999999999999999999654 44456666666554
No 111
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=82.73 E-value=17 Score=29.81 Aligned_cols=90 Identities=16% Similarity=0.165 Sum_probs=65.1
Q ss_pred chhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccc
Q 025427 107 EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGK 186 (253)
Q Consensus 107 ~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gk 186 (253)
.|..+...+.++.+. ++ +....+.+......+...+++.++-..|..|+.+. ++|...+.+-..=|.
T Consensus 14 ~~~~~~~~l~~~~~~-------~~---~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~ 80 (168)
T CHL00033 14 TFTIVADILLRILPT-------TS---GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGL 80 (168)
T ss_pred ccccchhhhhHhccC-------Cc---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHH
Confidence 366666666555432 23 33466777888888899999999999999998874 233333445555688
Q ss_pred cccccccHHHHHHHHHHHhcccc
Q 025427 187 MHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 187 l~~~ekdy~tA~s~F~EAFe~yd 209 (253)
++...++++.|..+|-.|.+-..
T Consensus 81 ~~~~~g~~~eA~~~~~~Al~~~~ 103 (168)
T CHL00033 81 IHTSNGEHTKALEYYFQALERNP 103 (168)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999987543
No 112
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=82.69 E-value=24 Score=29.05 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=39.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
..++.++...|+|++|...+++..+.-+. +..--..+..++....+...+.++..++...|..|..+
T Consensus 76 ~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~ 142 (172)
T PRK02603 76 YNMGIIYASNGEHDKALEYYHQALELNPK-----QPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEY 142 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----cHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHH
Confidence 46788999999999999888877765322 11111223334444344444555666666666665543
No 113
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.54 E-value=59 Score=32.93 Aligned_cols=197 Identities=17% Similarity=0.100 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh---hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~---v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
.++|..+.-++++|+|+++.++|+.-++.. ++ +-.|.++--+ + ..=++++.+.|.++++-..
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~-p~epiFYsNraAcY~-------~------lgd~~~Vied~TkALEl~P- 180 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELC-PDEPIFYSNRAACYE-------S------LGDWEKVIEDCTKALELNP- 180 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcC-CCCchhhhhHHHHHH-------H------HhhHHHHHHHHHHHhhcCc-
Confidence 467888889999999999999999999888 54 2222222111 0 0113455666666655221
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHH------------------HHHHHHH---------Hcc--cCCCC----------
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSK------------------ILKELHK---------SCQ--REDGT---------- 128 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~------------------li~~L~~---------~l~--~~~~~---------- 128 (253)
-+-|.-+|+|+.+=..|++++|+. +++.+++ .++ +++.-
T Consensus 181 --~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf 258 (606)
T KOG0547|consen 181 --DYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYF 258 (606)
T ss_pred --HHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHH
Confidence 244455566777777777766621 1222221 122 00000
Q ss_pred ----ch-------hhh---cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh------hccCCc-hhHHHHHHhhcccc
Q 025427 129 ----DD-------QKK---GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI------KSAIPH-PRIMGIIRECGGKM 187 (253)
Q Consensus 129 ----dD-------~~k---k~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~------~~aI~~-P~i~g~I~e~~Gkl 187 (253)
+| ..- ..+.=+.-++|... -.-+.++....+.+.-. .|.|-. -.-++.--+.-|+.
T Consensus 259 ~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~---~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF 335 (606)
T KOG0547|consen 259 GSFHADPKPLFDNKSDKSDAALAEALEALEKGL---EEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTF 335 (606)
T ss_pred hhccccccccccCCCccchhhHHHHHHHHHhhC---chhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhh
Confidence 00 000 11111122222211 01355566666655433 233333 24668888899999
Q ss_pred ccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCC
Q 025427 188 HMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISI 234 (253)
Q Consensus 188 ~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~i 234 (253)
|+--||+..|..+|=++.+.+--.-++ |.-++.++....-
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-------yI~~a~~y~d~~~ 375 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-------YIKRAAAYADENQ 375 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-------HHHHHHHHhhhhc
Confidence 999999999999999998865322222 7777777765443
No 114
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=82.47 E-value=54 Score=32.74 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=53.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
+.++..|+..|++++|..+|++....-+..+ +.+-+=.|.|..++|..+...++-..
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~~p~dp------------~~w~~LAqay~~~g~~~~a~~A~AE~----------- 434 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFNDPEDP------------NGWDLLAQAYAELGNRAEALLARAEG----------- 434 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCCc------------hHHHHHHHHHHHhCchHHHHHHHHHH-----------
Confidence 4689999999999999988888777744321 34556667777788877777777664
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
++..|+|+.|..-.--|=+
T Consensus 435 ------------~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 435 ------------YALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred ------------HHhCCCHHHHHHHHHHHHH
Confidence 5556666666655444444
No 115
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=82.41 E-value=40 Score=30.93 Aligned_cols=142 Identities=12% Similarity=0.172 Sum_probs=89.9
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSA--SQNFSLLREFYQTTLKA 81 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~--~~~~~~l~~~y~~~~e~ 81 (253)
..|+|..+|.-.++..+.+.++++++...+.+++... |.=+-.-=.==|+.+..... ++ ..+......-+.-..+.
T Consensus 65 p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-P~~~n~dY~~YlkgLs~~~~-i~~~~rDq~~~~~A~~~f~~~ 142 (254)
T COG4105 65 PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-PTHPNADYAYYLKGLSYFFQ-IDDVTRDQSAARAAFAAFKEL 142 (254)
T ss_pred CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-CCCCChhHHHHHHHHHHhcc-CCccccCHHHHHHHHHHHHHH
Confidence 4589999999999999999999999999999999887 63221111122333333322 22 23444455555666666
Q ss_pred HHHhh--------hhh-hHHHHh-----hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH
Q 025427 82 LEEAK--------NER-LWFKTN-----LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 147 (253)
Q Consensus 82 i~~a~--------~er-l~lk~~-----lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~ 147 (253)
|+.-. ..| .+++-. +--++.|+.+|.|-.|..=.+++.+.-+ + .+..-|-+..=-..
T Consensus 143 i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~------~---t~~~~eaL~~l~ea 213 (254)
T COG4105 143 VQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP------D---TSAVREALARLEEA 213 (254)
T ss_pred HHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc------c---ccchHHHHHHHHHH
Confidence 66311 123 445544 4788999999999988766666666533 3 44445555555566
Q ss_pred HHhhcCHHH
Q 025427 148 YTETKNNKK 156 (253)
Q Consensus 148 y~~~~n~~k 156 (253)
|..++....
T Consensus 214 Y~~lgl~~~ 222 (254)
T COG4105 214 YYALGLTDE 222 (254)
T ss_pred HHHhCChHH
Confidence 666665443
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.03 E-value=44 Score=34.30 Aligned_cols=109 Identities=13% Similarity=0.063 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN- 87 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k-a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~- 87 (253)
+-.+--.+.+.+.+|+++.+++.+.-++..+++.+.. .+.--+|-.|++....+.+.+. --++..+++.|-++
T Consensus 376 ~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~-----a~~vl~~Ai~~~~~~ 450 (652)
T KOG2376|consen 376 KVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDS-----ASAVLDSAIKWWRKQ 450 (652)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCcc-----HHHHHHHHHHHHHHh
Confidence 3445567789999999999999999888777666643 5666777777777766554321 23677888887553
Q ss_pred --hhhHHHHhh-hHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 88 --ERLWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 88 --erl~lk~~l-kLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
...-++.-+ .+|.+-+..|.-++|..++++|.+.-.
T Consensus 451 ~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~ 489 (652)
T KOG2376|consen 451 QTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP 489 (652)
T ss_pred cccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC
Confidence 235555555 888999999999999999999999733
No 117
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=80.98 E-value=52 Score=32.07 Aligned_cols=122 Identities=14% Similarity=0.189 Sum_probs=86.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHH
Q 025427 15 QTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKT 94 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~ 94 (253)
.++.-+.+.|+++++.+.+.+.++-- ..+. +...++.+. ++ +.+ .+.....+.++|..++- -.
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~-------~D~~-L~~~~~~l~--~~-d~~---~l~k~~e~~l~~h~~~p---~L 330 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQ-------WDPR-LCRLIPRLR--PG-DPE---PLIKAAEKWLKQHPEDP---LL 330 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhc-------cChh-HHHHHhhcC--CC-Cch---HHHHHHHHHHHhCCCCh---hH
Confidence 35666778899999998887766543 2222 666677665 22 232 34467777788877765 12
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
.+-|+.|++..+.|.+|.+-++ ..|+.-+..+| ++.=..++-+++...++-+.+..++.
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~le---aAl~~~~s~~~----------~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALE---AALKLRPSASD----------YAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHH---HHHhcCCChhh----------HHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2479999999999999998777 66665544445 66666777789999999999988873
No 118
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=80.96 E-value=46 Score=34.90 Aligned_cols=100 Identities=16% Similarity=0.234 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHH----hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHH
Q 025427 73 EFYQTTLKALEE----AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 148 (253)
Q Consensus 73 ~~y~~~~e~i~~----a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y 148 (253)
..++-.+..+.. +..+|+| +|-+++.--.++.++|+.++++-++..+.. + | +++.-=|++
T Consensus 632 ~e~eraR~llakar~~sgTeRv~----mKs~~~er~ld~~eeA~rllEe~lk~fp~f----~---K-----l~lmlGQi~ 695 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGTERVW----MKSANLERYLDNVEEALRLLEEALKSFPDF----H---K-----LWLMLGQIE 695 (913)
T ss_pred ccHHHHHHHHHHHhccCCcchhh----HHHhHHHHHhhhHHHHHHHHHHHHHhCCch----H---H-----HHHHHhHHH
Confidence 344555555443 4467888 456778888899999999998877775443 2 3 456667888
Q ss_pred HhhcCHHHHHHHHHHHH-hhhccCCchhHHHHHHhhccccc
Q 025427 149 TETKNNKKLKQLYQKAL-AIKSAIPHPRIMGIIRECGGKMH 188 (253)
Q Consensus 149 ~~~~n~~klk~~y~~a~-~~~~aI~~P~i~g~I~e~~Gkl~ 188 (253)
...+|+..+|.+|++-. .+.++||-=.+.+-++|--|.+-
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~ 736 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLV 736 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchh
Confidence 88999999999998765 47777776667888888666443
No 119
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=80.52 E-value=89 Score=33.71 Aligned_cols=138 Identities=18% Similarity=0.218 Sum_probs=82.2
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHH-H------------HHHHHhcCCCCcchhHHHH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI-N------------NIMDFVSGSASQNFSLLRE 73 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i-~------------~ild~~s~~~~~~~~~l~~ 73 (253)
.+.|+|..+|+.++...|+++++.+..+..+.+. |.-...+.-..+ . ++++.+.. +.+...++-
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~--~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLLNLIDSFSQ--NLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhhhhhhhccc--ccchhHHHH
Confidence 3679999999999999999999999999999888 665555554444 0 11222211 111222222
Q ss_pred HHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcC
Q 025427 74 FYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 153 (253)
Q Consensus 74 ~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n 153 (253)
+++..+ +-..+.. .-..||..|=..|++.+|...-+++.+.= + + ....+-=||. .|... |
T Consensus 105 ~~~~i~---~~~~~k~----Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~----~---n~~aLNn~AY---~~ae~-d 164 (906)
T PRK14720 105 ICDKIL---LYGENKL----ALRTLAEAYAKLNENKKLKGVWERLVKAD--R----D---NPEIVKKLAT---SYEEE-D 164 (906)
T ss_pred HHHHHH---hhhhhhH----HHHHHHHHHHHcCChHHHHHHHHHHHhcC--c----c---cHHHHHHHHH---HHHHh-h
Confidence 221111 1111111 11267888888899999988888888771 1 1 2333333332 12222 8
Q ss_pred HHHHHHHHHHHHhh
Q 025427 154 NKKLKQLYQKALAI 167 (253)
Q Consensus 154 ~~klk~~y~~a~~~ 167 (253)
++|+...|.+|...
T Consensus 165 L~KA~~m~~KAV~~ 178 (906)
T PRK14720 165 KEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888654
No 120
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=78.01 E-value=66 Score=34.41 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhh
Q 025427 138 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 216 (253)
Q Consensus 138 lEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a 216 (253)
.|++..-|....+++....+-.+...|+.... -.+ |.+.-.+.-||=+.-+..+||..|++|--.=+-.|.---+|-+
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~-f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYI-FFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhh-hhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 35555555555666666666555565554333 344 7788899999999899999999999986555544332233433
Q ss_pred HHHHHHHHHHHHhccCCCchHHHHHHHH
Q 025427 217 IQCLKYGFYLHLLFLISIYFLYLYFLTR 244 (253)
Q Consensus 217 ~~~LKYlvL~~iL~~s~id~~~~~~~~~ 244 (253)
... |++--+.++...-+++++=|+-|
T Consensus 705 ~~l--~n~~~s~~~~~~q~v~~~R~~~~ 730 (895)
T KOG2076|consen 705 LNL--WNLDFSYFSKYGQRVCYLRLIMR 730 (895)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 33334444444455555544433
No 121
>PRK11189 lipoprotein NlpI; Provisional
Probab=77.83 E-value=15 Score=33.42 Aligned_cols=92 Identities=10% Similarity=0.078 Sum_probs=56.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.+|...|++++|....++..+. .+ + ..+++..--.+|...+++..+.+.|.+|..+...- +.
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l---~P--~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~--~~- 133 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALAL---RP--D-------MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--NY- 133 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc---CC--C-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HH-
Confidence 5567777888888887666665554 11 1 13556666667777788888888888877654221 11
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.-..-|.++...|+|+.|..+|-.+.+
T Consensus 134 ---a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 134 ---AYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112234555566777777777666655
No 122
>PRK12370 invasion protein regulator; Provisional
Probab=77.66 E-value=79 Score=31.46 Aligned_cols=130 Identities=12% Similarity=0.017 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++..++.++...|+++++...+++.+..- |.-+.+...... +-.. .+. .++-...+..+++-....--+
T Consensus 340 a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~---~l~~---~G~----~~eAi~~~~~Al~l~P~~~~~ 408 (553)
T PRK12370 340 ALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGW---NLFM---AGQ----LEEALQTINECLKLDPTRAAA 408 (553)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH---HHHH---CCC----HHHHHHHHHHHHhcCCCChhh
Confidence 34456777888888888888888888776 654443322221 1111 111 112333444444422221111
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
..-++.+++..|+|++|....+++.+.... ++ ...+..-..+|..+++..++++.+.+...
T Consensus 409 ---~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p----~~-------~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 409 ---GITKLWITYYHTGIDDAIRLGDELRSQHLQ----DN-------PILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred ---HHHHHHHHHhccCHHHHHHHHHHHHHhccc----cC-------HHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 112344567789999999988887655311 12 12344455667789999999999877543
No 123
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=77.55 E-value=36 Score=27.51 Aligned_cols=97 Identities=10% Similarity=-0.068 Sum_probs=60.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 92 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~l 92 (253)
...++..+.+.|+++++.+.++..+..- |.-+..+..... ++..... .+.-.+....+++-.. -+-
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~--~~~~~g~--------~~~A~~~y~~Al~l~p---~~~ 92 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAG--TWMMLKE--------YTTAINFYGHALMLDA---SHP 92 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH--HHHHHhh--------HHHHHHHHHHHHhcCC---CCc
Confidence 4467889999999999999999988776 654444433332 1111110 1122222233222111 222
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
.....++..+...|++++|....+...+...
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3345788999999999999999988877754
No 124
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=42 Score=31.97 Aligned_cols=135 Identities=11% Similarity=0.124 Sum_probs=95.5
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
...-.++|..|.+.++-+.+.+.+.++.+. .+-...-++|.+.-+++-+-.+|-.-.++.+..+..+---=
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~---------a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkG 185 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRD---------AMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKG 185 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---------HHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhC
Confidence 334448899999999999998888877765 23355668899999999888888877777777765432221
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIY 235 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id 235 (253)
-+=-=-.-.+---|+..|..++|+.|-.-|.++.-.|.+..-..=-.+-+|++.|-.+.-.-.|
T Consensus 186 gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~leR~d 249 (412)
T COG5187 186 GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLERRD 249 (412)
T ss_pred CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheeehhh
Confidence 1111112233445677788899999999999999999876545556678899999888644333
No 125
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=75.74 E-value=59 Score=31.58 Aligned_cols=116 Identities=12% Similarity=0.137 Sum_probs=72.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHh
Q 025427 16 TVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTN 95 (253)
Q Consensus 16 l~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~ 95 (253)
|.+++-..++++.+.+.++++..-- |.+.- ..+++. + . .+... +.+.+..++++...++ ..
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~-pev~~-~LA~v~---l----~-~~~E~----~AI~ll~~aL~~~p~d-----~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD-PEVAV-LLARVY---L----L-MNEEV----EAIRLLNEALKENPQD-----SE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC-CcHHH-HHHHHH---H----h-cCcHH----HHHHHHHHHHHhCCCC-----HH
Confidence 4555566678888888888877655 44321 111111 1 1 12122 4456666666655444 22
Q ss_pred h--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 96 L--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 96 l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
+ -.|..+++.++|+.|+++.++..+..+ +| .+....=.++|..++++..+-.++.
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP-----~~-------f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELSP-----SE-------FETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCc-----hh-------HHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 2 678899999999999988888777732 22 5667777788888888876655443
No 126
>PRK14562 haloacid dehalogenase superfamily protein; Provisional
Probab=75.40 E-value=56 Score=28.66 Aligned_cols=54 Identities=15% Similarity=0.273 Sum_probs=39.7
Q ss_pred CCc-hhHHHHHHhhcccccc-----ccccHHHHHHH------HHHHhcccccc-----cChhhHHHHHHHH
Q 025427 171 IPH-PRIMGIIRECGGKMHM-----AERQWADAATD------FFEAFKNYDEA-----GNQRRIQCLKYGF 224 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~-----~ekdy~tA~s~------F~EAFe~yde~-----g~~~a~~~LKYlv 224 (253)
|+. +.++|..|..|=.|-+ ..||++.|... .|..|..+|-. |=.+|..++||.|
T Consensus 109 v~~~dYLlGl~Dl~GEL~R~al~~l~~gd~~~~~~i~~fm~~ly~~~~~l~~~~~~~~~LRkK~D~~r~~l 179 (204)
T PRK14562 109 VPEAAYLLGLADAIGELRRHILELLRKGEIEEAEKLLEIMEEIYEFLMTLDYPDAITPGLRRKQDVARSLL 179 (204)
T ss_pred CCHHHHHhHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCcccchhhHHHHHHHHHH
Confidence 666 8999999999977643 57889888653 56666666533 3358889999876
No 127
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.11 E-value=5.5 Score=23.20 Aligned_cols=28 Identities=18% Similarity=0.535 Sum_probs=24.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
+++|.++...|++++|.+.++++.+.-+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 4789999999999999999999988743
No 128
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=1e+02 Score=31.25 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh-h-hhh-hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-A-VTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~-~-v~k-a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
+++-.+++.|.+.++++....+|.+.++-... . +++ ...++.++---+.--. ++ +. +..
T Consensus 299 k~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~----~p-------e~-------A~e 360 (539)
T KOG0548|consen 299 KALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYI----NP-------EK-------AEE 360 (539)
T ss_pred HHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhh----Ch-------hH-------HHH
Confidence 55666777888889999988888875544311 1 111 1122221111000000 00 00 000
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
+| -.++-+|..|+|..|..-..+ .+++.| +|. -.|.--.--|.++.+++.+-.-...+...
T Consensus 361 ~r-------~kGne~Fk~gdy~~Av~~Yte---AIkr~P--~Da-------~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 361 ER-------EKGNEAFKKGDYPEAVKHYTE---AIKRDP--EDA-------RLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HH-------HHHHHHHhccCHHHHHHHHHH---HHhcCC--chh-------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 11 127889999999999876666 444433 441 13444555667777777755554444444
Q ss_pred hccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 168 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 168 ~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
..+.+-|-+|. |..+...++|.+|...|.|+-+
T Consensus 422 ----~p~~~kgy~RK--g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 422 ----DPNFIKAYLRK--GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred ----CchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHh
Confidence 23779999999 8999999999999999999887
No 129
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=73.66 E-value=34 Score=29.07 Aligned_cols=92 Identities=13% Similarity=0.094 Sum_probs=62.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhhhccCCc-h
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE-IQMYTETKNNKKLKQLYQKALAIKSAIPH-P 174 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE-~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P 174 (253)
.++..+++.|+|++|..+-+-|-.. |- .--. +-+= =-++..++|++++-.+|..|..+.-.=|. |
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~-------Dp-~~~~-----y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~ 106 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY-------DA-WSFD-----YWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP 106 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-------Cc-ccHH-----HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence 6788899999999999988888776 21 1011 1111 12445678999999999999888855555 4
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
--.|+.-...|. -..|...|--|...=
T Consensus 107 ~~ag~c~L~lG~-------~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDN-------VCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCC-------HHHHHHHHHHHHHHh
Confidence 466776666554 566666666665533
No 130
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=73.17 E-value=7.9 Score=24.91 Aligned_cols=31 Identities=26% Similarity=0.266 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
+..+++..|...|+++++.+.|++.+..- |.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~ 33 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALD-PD 33 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cC
Confidence 56789999999999999999999998876 54
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=72.45 E-value=1.3e+02 Score=31.43 Aligned_cols=98 Identities=3% Similarity=-0.126 Sum_probs=74.8
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..+-++..+.+.+++++|...++++.+.-. .-.+.+.+.....-+++.+.++-++|.++.. .+.-.
T Consensus 122 a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p------------~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~-~~p~~- 187 (694)
T PRK15179 122 AFILMLRGVKRQQGIEAGRAEIELYFSGGS------------SSAREILLEAKSWDEIGQSEQADACFERLSR-QHPEF- 187 (694)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhhcCC------------CCHHHHHHHHHHHHHhcchHHHHHHHHHHHh-cCCCc-
Confidence 345789999999999999988888887721 1234566677777789999999999999987 33321
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
.....-=|+.++.-|+.+.|...|-.|++.+.
T Consensus 188 ----~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 188 ----ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 12223347788899999999999999999774
No 132
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=71.96 E-value=78 Score=28.74 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCc--chhHHHHHHHHHHHHHH-Hhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ--NFSLLREFYQTTLKALE-EAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~--~~~~l~~~y~~~~e~i~-~a~~ 87 (253)
..+|.=+.-+|+.|+|+++...|.+-+... |..+. -.|+|+ +++..-. ..+--+..++-|..+|+ |+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~c-p~~~~-----e~rsIl--y~Nraaa~iKl~k~e~aI~dcsKaiel~p-- 165 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESC-PSTST-----EERSIL--YSNRAAALIKLRKWESAIEDCSKAIELNP-- 165 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhC-ccccH-----HHHHHH--HhhhHHHHHHhhhHHHHHHHHHhhHhcCc--
Confidence 346777778999999999999999999999 65443 223333 3221000 01011223334444444 33
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHc
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 122 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l 122 (253)
++-|.-.|.|.+|=...+|++|++-.+.|+...
T Consensus 166 --ty~kAl~RRAeayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 166 --TYEKALERRAEAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred --hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC
Confidence 334455599999999999999998888888773
No 133
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=70.00 E-value=53 Score=33.89 Aligned_cols=131 Identities=17% Similarity=0.148 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh-h
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-N 87 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~-~ 87 (253)
-+.|..-|+-+|.++++++.+.-.++..++-- |. |.+ |+-.++.+. .-.+..+..++.++.|- -
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~---nsv------i~~~~g~~~-----~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PS---NSV------ILCHIGRIQ-----HQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-cc---chh------HHhhhhHHH-----HHhhhhhHHHHHHHHHHhc
Confidence 35678889999999999998887777665543 32 111 122222110 01122233333333222 1
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
+..=-=.+.+.|.+++..++|++|+..+++|++.+.+. .-||++--++|..+++...+.-=+.=|..
T Consensus 553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e------------s~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE------------SSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch------------HHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 11111133488999999999999999999999997653 23788999999999987766655544443
No 134
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=69.17 E-value=60 Score=29.52 Aligned_cols=62 Identities=11% Similarity=0.183 Sum_probs=46.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
..++.+|+..|+|++|....+.+.+.-+. ....-+.+.--..+|..+++..+++..|....+
T Consensus 184 y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---------s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 184 YWLGQLNYNKGKKDDAAYYFASVVKNYPK---------SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC---------CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 48999999999999999888877766433 222333444445667789999999999997754
No 135
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=68.74 E-value=15 Score=21.67 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+++..-.++|..++|+.++...|.+++.+..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566667788888888888888888877653
No 136
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=68.33 E-value=9.9 Score=22.26 Aligned_cols=27 Identities=11% Similarity=0.293 Sum_probs=22.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHc
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSC 122 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l 122 (253)
..++.+++..|+|++|.+.+++..+..
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 378999999999999999998888763
No 137
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=67.59 E-value=1.2e+02 Score=29.23 Aligned_cols=137 Identities=12% Similarity=0.116 Sum_probs=83.6
Q ss_pred hHHHHh-hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 90 LWFKTN-LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 90 l~lk~~-lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.-.++- ++.|.-|.+.|+-+.|.+..+.....- +--.+=++|...-+++-.-..|..=.....++|..+-
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~kt---------vs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~li 171 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKT---------VSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLI 171 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH---------hhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 444444 499999999999999998877766551 1133446777777776554444333333333332211
Q ss_pred ccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCc
Q 025427 169 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIY 235 (253)
Q Consensus 169 ~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id 235 (253)
--=-+=-=-.-.+---|+..|.-+||+.|-.=|.|+.-.|.+..=.-=-....|+|+|.++.-.-.|
T Consensus 172 E~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~leR~d 238 (393)
T KOG0687|consen 172 EEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALERVD 238 (393)
T ss_pred HhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheeccch
Confidence 0000000011223334666678999999999999998888765433334567899999998754444
No 138
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=67.47 E-value=15 Score=33.84 Aligned_cols=109 Identities=20% Similarity=0.223 Sum_probs=75.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-CCch
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-IPHP 174 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a-I~~P 174 (253)
+=-|.+++..|++++|++++.+ + --+|..++-+++|-.+++..-++..+.....+.-- |..-
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~----------------~-~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~q 168 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHK----------------G-GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQ 168 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTT----------------T-TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHc----------------c-CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 4567788899999999876642 1 12699999999999999999999988887765332 3334
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhcc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFL 231 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~ 231 (253)
...|-|..-.|. ..+..|+..|-|--+.|.+ ....|--+..|.|..+
T Consensus 169 La~awv~l~~g~-----e~~~~A~y~f~El~~~~~~-----t~~~lng~A~~~l~~~ 215 (290)
T PF04733_consen 169 LAEAWVNLATGG-----EKYQDAFYIFEELSDKFGS-----TPKLLNGLAVCHLQLG 215 (290)
T ss_dssp HHHHHHHHHHTT-----TCCCHHHHHHHHHHCCS-------SHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCc-----hhHHHHHHHHHHHHhccCC-----CHHHHHHHHHHHHHhC
Confidence 456667766554 5689999988886665532 2344556677777654
No 139
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=1.2e+02 Score=29.21 Aligned_cols=123 Identities=7% Similarity=0.041 Sum_probs=80.8
Q ss_pred hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc--hhHHHHHH
Q 025427 104 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH--PRIMGIIR 181 (253)
Q Consensus 104 ~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~--P~i~g~I~ 181 (253)
+.++.++|++.++++.+.++.. ++ +.=.+=+..-+.+.+-..++++..|..+.....+-.++.- |++-+.--
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~---~e---~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEY---KE---PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhh---cc---chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 4457899999999999998876 33 2223333444455566889999999999999987777664 66999999
Q ss_pred hhccccccccccHHHHHHHHHHHhc--ccccccC---hhhHHHHHHHHHHHHhccCCCc
Q 025427 182 ECGGKMHMAERQWADAATDFFEAFK--NYDEAGN---QRRIQCLKYGFYLHLLFLISIY 235 (253)
Q Consensus 182 e~~Gkl~~~ekdy~tA~s~F~EAFe--~yde~g~---~~a~~~LKYlvL~~iL~~s~id 235 (253)
..|-+.|-.-+||..+|. .|.. |+.+..+ .++.+--=-+.++-||.+.--|
T Consensus 161 ~lssqYyk~~~d~a~yYr---~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyN 216 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASYYR---HALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYN 216 (380)
T ss_pred HHHHHHHHHHHhHHHHHH---HHHHHhccccccccCHHHHHHHHHHHHHHHHhcccccc
Confidence 999898888888876544 3433 2222222 2332333345666666544333
No 140
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=67.17 E-value=8.3 Score=23.85 Aligned_cols=25 Identities=16% Similarity=0.329 Sum_probs=21.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
.|+.+|.+.|+|++|.+.-++.+.-
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7899999999999999999987744
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=66.65 E-value=34 Score=34.91 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHhhhhh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhc
Q 025427 74 FYQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK 152 (253)
Q Consensus 74 ~y~~~~e~i~~a~~er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~ 152 (253)
.+..+++.++...++. .|--+...|+.++-..++|.+|+.--+.-+..+++. .++|+-=-=+|+.+|
T Consensus 436 ~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~------------~~~~asig~iy~llg 503 (611)
T KOG1173|consen 436 YFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD------------ASTHASIGYIYHLLG 503 (611)
T ss_pred HHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc------------hhHHHHHHHHHHHhc
Confidence 4445556666666776 698899999999999999999998888887775552 456777777899999
Q ss_pred CHHHHHHHHHHHHhhhcc-CCchhH
Q 025427 153 NNKKLKQLYQKALAIKSA-IPHPRI 176 (253)
Q Consensus 153 n~~klk~~y~~a~~~~~a-I~~P~i 176 (253)
|+.++-..|.+|+.++-. +.+..+
T Consensus 504 nld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 504 NLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred ChHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999999999986543 444333
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=65.99 E-value=10 Score=21.61 Aligned_cols=26 Identities=19% Similarity=0.572 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLT 38 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~ 38 (253)
+..++..|.+.|+++++.+.++++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 45688999999999999999998764
No 143
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=65.25 E-value=13 Score=25.35 Aligned_cols=28 Identities=25% Similarity=0.485 Sum_probs=23.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHc
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSC 122 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l 122 (253)
.+.+|.+|+..|++++|..+++.+...-
T Consensus 28 ~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 28 RLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3479999999999999999999988873
No 144
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=65.03 E-value=66 Score=28.63 Aligned_cols=82 Identities=22% Similarity=0.232 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHHHhh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHH
Q 025427 69 SLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEI 145 (253)
Q Consensus 69 ~~l~~~y~~~~e~i~~a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~ 145 (253)
+.-..++++...+++.-+ ..|.--...+.+|.-|+..|+|++|.++++.+....++++ = ..++-+|.-.=.
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---W---~~l~~~~l~~l~ 225 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG---W---WSLLTEVLWRLL 225 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---c---HHHHHHHHHHHH
Confidence 344455555555555433 3456666666999999999999999999999977776642 2 344444444444
Q ss_pred HHHHhhcCHHH
Q 025427 146 QMYTETKNNKK 156 (253)
Q Consensus 146 ~~y~~~~n~~k 156 (253)
+-+..++|...
T Consensus 226 ~Ca~~~~~~~~ 236 (247)
T PF11817_consen 226 ECAKRLGDVED 236 (247)
T ss_pred HHHHHhCCHHH
Confidence 45555566543
No 145
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=65.00 E-value=1.8e+02 Score=31.31 Aligned_cols=109 Identities=15% Similarity=0.125 Sum_probs=57.1
Q ss_pred hHHHHhh-hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHH---------
Q 025427 90 LWFKTNL-KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ--------- 159 (253)
Q Consensus 90 l~lk~~l-kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~--------- 159 (253)
.|+-..+ +.+..+...++-+.|.+.+..-...++...+-+| =..+.|+++.=.+.-.++.-+-+.+.
T Consensus 277 er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed---~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e 353 (895)
T KOG2076|consen 277 ERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLED---LNILAELFLKNKQSDKALMKIVDDRNRESEKDDSE 353 (895)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccH---HHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhh
Confidence 4444445 4477777777777777766666665554444445 44555555544443333322222222
Q ss_pred ---------HHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHH
Q 025427 160 ---------LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFE 203 (253)
Q Consensus 160 ---------~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~E 203 (253)
-......+.+.++. -.-+|+.|-|.+|+.+++-..|---|..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~s~--~l~v~rl~icL~~L~~~e~~e~ll~~l~ 404 (895)
T KOG2076|consen 354 WDTDERRREEPNALCEVGKELSY--DLRVIRLMICLVHLKERELLEALLHFLV 404 (895)
T ss_pred hhhhhhccccccccccCCCCCCc--cchhHhHhhhhhcccccchHHHHHHHHH
Confidence 00001112222221 1112899999999998888777766654
No 146
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=64.86 E-value=34 Score=23.65 Aligned_cols=43 Identities=16% Similarity=0.291 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 58 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild 58 (253)
.+..++--+++.|+|+++.++...++..= |. |.-++.+..+|+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~e-P~---N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIE-PD---NRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TS----HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CC---cHHHHHHHHHHH
Confidence 57788999999999999999999999876 65 556666666666
No 147
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=64.70 E-value=14 Score=23.73 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.5
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
-+.+|..|.+.|++++|..+++++.+...
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P 32 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDP 32 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999998844
No 148
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=64.50 E-value=14 Score=25.46 Aligned_cols=55 Identities=13% Similarity=0.221 Sum_probs=42.8
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 146 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 146 ~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
++|...+++.++...+..+...... .......-|.++...|+|..|..+|-.+-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD------DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5788889999999999998887444 222333467788899999999999888775
No 149
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=64.01 E-value=1.3e+02 Score=28.17 Aligned_cols=109 Identities=19% Similarity=0.214 Sum_probs=72.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhh---hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh-hhh
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NER 89 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~---v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~-~er 89 (253)
-.|+++|..+|+++.+...|.+-...- ++ +=-.+++-. +++..+..+. +.-++..+++.--. |-|
T Consensus 160 ~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL------~~~a~~~~ta----~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 160 DLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEAL------YYQAGQQMTA----KARALLRQALALDPANIR 228 (287)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHH------HHhcCCcccH----HHHHHHHHHHhcCCccHH
Confidence 358999999999999999999888777 42 111222222 3333332222 44456666666322 334
Q ss_pred -hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHH
Q 025427 90 -LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE 144 (253)
Q Consensus 90 -l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE 144 (253)
+| =||.-+++.|+|.+|...-+.+++.+... |+ ...++|-...+
T Consensus 229 al~-----lLA~~afe~g~~~~A~~~Wq~lL~~lp~~---~~---rr~~ie~~ia~ 273 (287)
T COG4235 229 ALS-----LLAFAAFEQGDYAEAAAAWQMLLDLLPAD---DP---RRSLIERSIAR 273 (287)
T ss_pred HHH-----HHHHHHHHcccHHHHHHHHHHHHhcCCCC---Cc---hHHHHHHHHHH
Confidence 44 48999999999999999999999998764 44 55555554443
No 150
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=63.69 E-value=92 Score=26.45 Aligned_cols=67 Identities=12% Similarity=0.234 Sum_probs=46.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
+..+++.+..+++..+...|.+....+.+. +|..+++- +-+.+--.+...+|+.++-..+..+...-
T Consensus 77 l~~irv~i~~~d~~~v~~~i~ka~~~~~~~---~d~~~~nr---lk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 77 LNVIRVAIFFGDWSHVEKYIEKAESLIEKG---GDWERRNR---LKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhcc---chHHHHHH---HHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 456667778888888888888888888775 45333332 45556666667788888887777766433
No 151
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=62.89 E-value=17 Score=19.17 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTY 39 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~ 39 (253)
.++..++.++...|+++++...+++.+..
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35678899999999999999999877654
No 152
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=61.55 E-value=19 Score=24.37 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTY 39 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~ 39 (253)
-.+...++.++.++|+++++...|++.+..
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 345666666777777777776666666544
No 153
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.26 E-value=49 Score=24.86 Aligned_cols=23 Identities=13% Similarity=0.325 Sum_probs=18.1
Q ss_pred hhhcchhHHHHHHHHHHHHcccC
Q 025427 103 FDMGEYGRMSKILKELHKSCQRE 125 (253)
Q Consensus 103 l~~~~y~~a~~li~~L~~~l~~~ 125 (253)
+..|+|.+|.+-+......++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~ 31 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQS 31 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhc
Confidence 46899999998888877776654
No 154
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.42 E-value=20 Score=20.59 Aligned_cols=26 Identities=19% Similarity=0.461 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLT 38 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~ 38 (253)
+.-++..|++.|+++++.+++.++..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678899999999999999988764
No 155
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=58.96 E-value=47 Score=26.27 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.+.+...++++|...|+..++++.|.++...+
T Consensus 95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l 126 (146)
T PF03704_consen 95 DEEAYRLLMRALAAQGRRAEALRVYERYRRRL 126 (146)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 34555566666666666666666666655555
No 156
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=57.94 E-value=27 Score=20.27 Aligned_cols=27 Identities=11% Similarity=0.234 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLT 38 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~ 38 (253)
++.-+++.+++.|+++.+.+++.++..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456788999999999999999988765
No 157
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.85 E-value=1.6e+02 Score=27.47 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh--------hhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN--------YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka--------~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
+|.|=+.-++++|+|.++...|++-+.-+..-+.|. ..+|.++-++-++.++-= ..+=.-.+.+.|-+.+.
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHh
Confidence 567778899999999999999999888775545554 468888888888876521 11112345556666665
Q ss_pred H-hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHH
Q 025427 84 E-AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY 148 (253)
Q Consensus 84 ~-a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y 148 (253)
- ..|.+ .-.|.|+.....=+-.+|..-++.+++. |.+..+..-=|.-++|-++.
T Consensus 259 ~~~~nvK----A~frRakAhaa~Wn~~eA~~D~~~vL~l-------dpslasvVsrElr~le~r~~ 313 (329)
T KOG0545|consen 259 HHPGNVK----AYFRRAKAHAAVWNEAEAKADLQKVLEL-------DPSLASVVSRELRLLENRMA 313 (329)
T ss_pred cCCchHH----HHHHHHHHHHhhcCHHHHHHHHHHHHhc-------ChhhHHHHHHHHHHHHHHHH
Confidence 3 22444 2235666666666777887666666665 55556666778888887774
No 158
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=57.53 E-value=41 Score=27.07 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=39.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhc---CHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK---NNKKLKQLYQK 163 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~---n~~klk~~y~~ 163 (253)
++|.-++.+|++-+|+++|+++-..=.+ | ...-.++-++=.|+..+. +.|-+|..|-.
T Consensus 1 e~A~~~~~rGnhiKAL~iied~i~~h~~-----~----~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl 61 (111)
T PF04781_consen 1 EKAKDYFARGNHIKALEIIEDLISRHGE-----D----ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLL 61 (111)
T ss_pred ChHHHHHHccCHHHHHHHHHHHHHHccC-----C----CchHHHHHHHhHHHHHHHHhccCchHHHHHHH
Confidence 4678899999999999999999877333 1 112256667777776553 45556655543
No 159
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=57.19 E-value=2.4e+02 Score=29.07 Aligned_cols=185 Identities=14% Similarity=0.158 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHH--------------HHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHH
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYR--------------EMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQ 76 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~--------------~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~ 76 (253)
-|+..++++|.+. ..+++..+.+ ++.++. ..+.+.+++...+++++++- |..+..-+..+.+
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-Ekik~sk~a~~f~Ka~yrfI--~~~q~~~i~evWe 175 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-EKIKKSKAAEFFGKALYRFI--PRRQNAAIKEVWE 175 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-HHhchhhHHHHHHHHHHHhc--chhhhhhHHHHHH
Confidence 3788888999887 4555555555 344444 45666777777777777764 3222211222222
Q ss_pred HHHHHHHHhhhh--hhHHHHhh----hHH--------HHHhhhcchhHHHHHHHHHHHHcccCCCC--------chhhhc
Q 025427 77 TTLKALEEAKNE--RLWFKTNL----KLC--------KIWFDMGEYGRMSKILKELHKSCQREDGT--------DDQKKG 134 (253)
Q Consensus 77 ~~~e~i~~a~~e--rl~lk~~l----kLa--------~l~l~~~~y~~a~~li~~L~~~l~~~~~~--------dD~~kk 134 (253)
-.-+.+-.-+.. |+-++..- +++ .-|-+..+|++|+++++.+++.=.+.--. -|.-|+
T Consensus 176 KL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~ 255 (711)
T COG1747 176 KLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRG 255 (711)
T ss_pred HHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhcc
Confidence 222211111000 11111111 222 23446789999999999887761110000 122234
Q ss_pred chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh--hhccCCc-hhHHHHHHhhc----------cccccccccHHHHHHH
Q 025427 135 SQLLEVYAIEIQMYTETKNNKKLKQLYQKALA--IKSAIPH-PRIMGIIRECG----------GKMHMAERQWADAATD 200 (253)
Q Consensus 135 ~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~--~~~aI~~-P~i~g~I~e~~----------Gkl~~~ekdy~tA~s~ 200 (253)
.--+|=|+--+.+...-+|...+-.-+..-+- =.|=|+| --=.|+|+-.+ |++ +++=-|++|++.
T Consensus 256 ~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGnFVfHqtWgVG~i~~VsfqqkvlidF~~~r-ah~I~femA~sa 333 (711)
T COG1747 256 HSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGNFVFHQTWGVGEIMGVSFQQKVLIDFEGRR-AHDISFEMAFSA 333 (711)
T ss_pred chhHHHHHHhcchhhccccHHHHHHHHHHHheeccCceEEecccccceeeecccccceeeeehhhh-hhhhhHHHHHHH
Confidence 45566677666666666666655444444443 3455888 43455555433 344 444455666554
No 160
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=57.17 E-value=52 Score=29.30 Aligned_cols=100 Identities=17% Similarity=0.201 Sum_probs=69.3
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..|-+|+.+.|.+++++|...|+..... . .|+ .|-.|..+ ++-.+.=-..-+..|++.-.+|-.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~---t--~De-----~lk~l~~l------RLArvq~q~~k~D~AL~~L~t~~~ 154 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQ---T--KDE-----NLKALAAL------RLARVQLQQKKADAALKTLDTIKE 154 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc---c--hhH-----HHHHHHHH------HHHHHHHHhhhHHHHHHHHhcccc
Confidence 3457899999999999998666655433 2 133 11111111 111111122446677787788888
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
|---+.+-+.-|-+.+.-||=+.|+..+-.|.+...
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 888888999999999999999999999999999873
No 161
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.64 E-value=82 Score=23.60 Aligned_cols=30 Identities=20% Similarity=0.359 Sum_probs=27.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQRE 125 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~ 125 (253)
+.+|.++...|++++|...+++..+..++.
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988887
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=56.48 E-value=1.5e+02 Score=28.80 Aligned_cols=110 Identities=14% Similarity=0.092 Sum_probs=73.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
-|.+++-..+.|+.|..++++|.+. +. |+.++=.+++...++-.++-+++.++.+.. |.-
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~-------~p--------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-----p~d 233 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER-------DP--------EVAVLLARVYLLMNEEVEAIRLLNEALKEN-----PQD 233 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc-------CC--------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-----CCC
Confidence 3455666678899999999998877 22 345555677777777777767777766321 222
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccC
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s 232 (253)
+.+-..-+...+..++|+.|....-+|-+. .|.-..+--+|+-|-|..+.
T Consensus 234 -~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l-----sP~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 234 -SELLNLQAEFLLSKKKYELALEIAKKAVEL-----SPSEFETWYQLAECYIQLGD 283 (395)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHhcCC
Confidence 555555566677888888888887666552 36666676666666665543
No 163
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=56.19 E-value=18 Score=20.82 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYR 34 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~ 34 (253)
+...++..+..+|+++++...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45678999999999999998875
No 164
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.05 E-value=51 Score=23.28 Aligned_cols=50 Identities=22% Similarity=0.357 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccC
Q 025427 76 QTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 125 (253)
Q Consensus 76 ~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~ 125 (253)
+-..+.++.-+..|==+...|..+.-|++.|++++|.+.|+++.+.++..
T Consensus 7 ~~~~~~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~~~~~~ 56 (62)
T PF14689_consen 7 EELEELIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEYIKELSKDLQQE 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 33444444444444335667789999999999999999999999887653
No 165
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=55.28 E-value=2.2e+02 Score=28.12 Aligned_cols=183 Identities=11% Similarity=0.103 Sum_probs=112.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh--hhhh
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK--NERL 90 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~--~erl 90 (253)
--+-+--+++.+++++++...++.+.-+...++|-.+ +-..... .+....-+++..-....|+-+. ++..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~-------lG~l~~a-~s~~g~y~~mL~~a~sqi~~a~~~~ds~ 80 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRV-------LGCLVTA-HSEMGRYKEMLKFAVSQIDTARELEDSD 80 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-------hccchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445667788888888877777777334444211 1111100 1122233444444444444333 2333
Q ss_pred H-HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 91 W-FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 91 ~-lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+ +-..+++++-+=.-.+|++++. .-+++-..+|++. +..=--+++.=...|-.++-+.|.-..+.+|.++++
T Consensus 81 ~~~ea~lnlar~~e~l~~f~kt~~----y~k~~l~lpgt~~---~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 81 FLLEAYLNLARSNEKLCEFHKTIS----YCKTCLGLPGTRA---GQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHH----HHHHHhcCCCCCc---ccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 3 3444566666655566666653 3345555566544 222224566677888889999999999999999999
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
++-+|.+-=+|=--=|-++..-+||++|..+--.|.+=-++
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 99998876666666688899999999999887777654333
No 166
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.02 E-value=2.2e+02 Score=30.60 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIK 41 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~ 41 (253)
-.++-+.-++++|+++++.+.|.+.++++-
T Consensus 370 i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 370 IHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 345566778899999999999999999883
No 167
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=54.56 E-value=48 Score=30.01 Aligned_cols=97 Identities=13% Similarity=0.158 Sum_probs=52.9
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhhhccCCchhHH
Q 025427 99 CKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKSAIPHPRIM 177 (253)
Q Consensus 99 a~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-~n~~klk~~y~~a~~~~~aI~~P~i~ 177 (253)
|..+++.|++.-|..|..-+.+.+.+.....|.....-++|++.. . .+-|..+...++|.+-+..-.+|.=-
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~-------~~~~~p~r~~fi~~ai~WS~~~~~~~Gd 89 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISL-------FPPEEPERKKFIKAAIKWSKFGSYKFGD 89 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHH-------S-TT-TTHHHHHHHHHHHHHTSS-TT--
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-------CCCCcchHHHHHHHHHHHHccCCCCCCC
Confidence 567788888888877776666666554333332233455554432 2 23334556666666544222223333
Q ss_pred HHHHhhccccccccccHHHHHHHHH
Q 025427 178 GIIRECGGKMHMAERQWADAATDFF 202 (253)
Q Consensus 178 g~I~e~~Gkl~~~ekdy~tA~s~F~ 202 (253)
-.+...=|.++..|++|..|..+|.
T Consensus 90 p~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 90 PELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3444445778899999988888874
No 168
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=54.30 E-value=17 Score=28.73 Aligned_cols=65 Identities=9% Similarity=0.193 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
+..|+-+|...|.+++++++++++-.--.+...-+...+.-..|+++....+..+. ++..+.-+|
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~~~~~~~~~~~~~~~~~~iv~yL~~L~~~~~-------dLI~~~s~W 106 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLADEEDSDEEDPFLSGVKETIVQYLQKLGNEDL-------DLIFEYSDW 106 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhcccccccccccccCchhHHHHHHHhCChhhh-------HHHHHhccc
Confidence 35688899999999999999988776100001101112222335777776554332 555555444
No 169
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.28 E-value=1.4e+02 Score=28.78 Aligned_cols=169 Identities=14% Similarity=0.147 Sum_probs=101.1
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH-hhhhhhHHHHhhh
Q 025427 19 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKNERLWFKTNLK 97 (253)
Q Consensus 19 l~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~-a~~erl~lk~~lk 97 (253)
-+++.++|+++.+.++...+ .-+|+.+.=+. +-++=- .. +-|...-+|-+. +.+---.=+-++-
T Consensus 19 ~lI~d~ry~DaI~~l~s~~E----r~p~~rAgLSl---LgyCYY-------~~-Q~f~~AA~CYeQL~ql~P~~~qYrlY 83 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELE----RSPRSRAGLSL---LGYCYY-------RL-QEFALAAECYEQLGQLHPELEQYRLY 83 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHh----cCccchHHHHH---HHHHHH-------HH-HHHHHHHHHHHHHHhhChHHHHHHHH
Confidence 34778899999887765544 33444444333 333310 01 112222222221 1110011122334
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhH
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI 176 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i 176 (253)
.|.-++..+.|.+|+.++..+... -.+.=++.-||+-+-+.-.|++-.|.+..+- |. -.-
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~------------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~en~A 144 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN------------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PSENEA 144 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC------------HHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cCCCcc
Confidence 566678888999999887776432 4566778888998888888988777766553 22 233
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHh--cccccc----------cChhhHHHHHHH
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAF--KNYDEA----------GNQRRIQCLKYG 223 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAF--e~yde~----------g~~~a~~~LKYl 223 (253)
-++|++ |-+...+++|+.|...|-+|. -||+.. .+-++-++|||.
T Consensus 145 d~~in~--gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 145 DGQINL--GCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred chhccc--hheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH
Confidence 455554 667789999999999999985 466541 123556778875
No 170
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=53.15 E-value=90 Score=26.12 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=27.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
-|+|..+|--.|+-.|++.++++++...+++++..- |.
T Consensus 42 ~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~ 79 (142)
T PF13512_consen 42 FGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PT 79 (142)
T ss_pred CCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 466777777777777777777777777777777665 54
No 171
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=52.17 E-value=2.7e+02 Score=28.23 Aligned_cols=98 Identities=14% Similarity=0.174 Sum_probs=57.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-hh
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSA--VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RL 90 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~--v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e-rl 90 (253)
.-|+++|-+.++.+++...|++...+- .. ..=.+.+|.=.++=|.=. --+.|+.+.+........ --
T Consensus 436 ~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~e---------Aa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 436 VALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNE---------AAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHhhcccchH
Confidence 468999999999999999999988775 21 111223333222222111 125566666654322211 12
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
-.+..+=||+-++..++|++|..-...+..-
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence 2344444889999999999997655554443
No 172
>PF12854 PPR_1: PPR repeat
Probab=51.91 E-value=25 Score=21.57 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREM 36 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~l 36 (253)
.+.-|+.-+++.|+.+++.+++.++
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4556889999999999999998764
No 173
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=51.66 E-value=2.2e+02 Score=26.99 Aligned_cols=85 Identities=11% Similarity=0.065 Sum_probs=59.2
Q ss_pred hhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHh
Q 025427 103 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 182 (253)
Q Consensus 103 l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e 182 (253)
+..++.+++++.+++..+. -| +| .+++...-+++...+++.+++..+.++......-..-...|.+.+
T Consensus 305 l~~~~~~~al~~~e~~lk~---~P--~~-------~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~ 372 (398)
T PRK10747 305 LKTNNPEQLEKVLRQQIKQ---HG--DT-------PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALD 372 (398)
T ss_pred ccCCChHHHHHHHHHHHhh---CC--CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 3458888887777776654 32 33 367888999999999999999999999987543222245666655
Q ss_pred hccccccccccHHHHHHHHHHHhc
Q 025427 183 CGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 183 ~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
. .++-+.|..++-++..
T Consensus 373 ~-------~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 373 R-------LHKPEEAAAMRRDGLM 389 (398)
T ss_pred H-------cCCHHHHHHHHHHHHh
Confidence 4 4456777777666654
No 174
>PF13041 PPR_2: PPR repeat family
Probab=50.51 E-value=35 Score=22.22 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTY 39 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~ 39 (253)
++.-++..+++.|+++++.++++++...
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3456788999999999999999998854
No 175
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=50.48 E-value=2.9e+02 Score=28.10 Aligned_cols=155 Identities=18% Similarity=0.159 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
=...++++....+..+++.+.+.|...+..- +.++. .+.+..+-- .......-..+|-..++.-..
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~-------~~n~aA~~~----e~~~~~~c~~~c~~a~E~gre-- 289 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITY-------LNNIAAVYL----ERGKYAECIELCEKAVEVGRE-- 289 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHH-------HHHHHHHHH----hccHHHHhhcchHHHHHHhHH--
Confidence 3457889999999999999999998888776 55443 111111100 000011112233333332221
Q ss_pred hHHHHhh------hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 90 LWFKTNL------KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 90 l~lk~~l------kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
+|..-++ |+++.|...++|..|...+++.+.+-+.+ |+ -+-...+.+
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~---~~------------------------ls~lk~~Ek 342 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTP---DL------------------------LSKLKEAEK 342 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCH---HH------------------------HHHHHHHHH
Confidence 4433333 78889999999999988888876665554 22 111222233
Q ss_pred HHhhhccC--CchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 164 ALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 164 a~~~~~aI--~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
+......- ..|..-..-+++ |.=++..+||..|-.++=||.+
T Consensus 343 ~~k~~e~~a~~~pe~A~e~r~k-Gne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 343 ALKEAERKAYINPEKAEEEREK-GNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred HHHHHHHHHhhChhHHHHHHHH-HHHHHhccCHHHHHHHHHHHHh
Confidence 33333331 126665566666 8889999999999999888877
No 176
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.98 E-value=2.2e+02 Score=26.57 Aligned_cols=63 Identities=19% Similarity=0.285 Sum_probs=44.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhhhc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-~n~~klk~~y~~a~~~~~ 169 (253)
-||.+|+..|+|.+|.=.+.++.=. .| -+.+.---+-|..++-+. .|+.-+|..|.+|..++.
T Consensus 159 eLaeiY~~~~~f~kA~fClEE~ll~--~P--------~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 159 ELAEIYLSEGDFEKAAFCLEELLLI--QP--------FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHHHc--CC--------CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 6889999999999998888877644 21 344555555555555544 477778888888888776
No 177
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=49.75 E-value=31 Score=24.54 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=39.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.-+--++..|+|=+|.+++.++=...+.. + + ..+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~----~---~---------------------------------------~~l 37 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP----E---R---------------------------------------DFL 37 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC----H---H---------------------------------------HHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc----h---H---------------------------------------HHH
Confidence 44556778899999999998887643221 1 1 346
Q ss_pred HHHHHhhccccccccccHHHHHH
Q 025427 177 MGIIRECGGKMHMAERQWADAAT 199 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s 199 (253)
||.|..+.|..|...++.+-|..
T Consensus 38 qglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 38 QGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHH
Confidence 78888888888888888877754
No 178
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=49.52 E-value=98 Score=25.89 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=49.9
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+.|.-.++.|+|.+|.+.++.|..--.- +.+.-.+.+--+-.|+..++++++.+.|..=++.--
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~---------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPF---------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC---------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 5566778999999999999999887544 334445566667789999999999999998766543
No 179
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=48.76 E-value=73 Score=24.15 Aligned_cols=72 Identities=21% Similarity=0.363 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHhhhccCCchhHHHHHHhh
Q 025427 111 MSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 183 (253)
Q Consensus 111 a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~---~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~ 183 (253)
....+++|+.++.+.+..|+..+..+---.--+|-.+... -.+-+.+..-...| ...-..-||++.|+|+..
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~~~~~~~~~~~l~d~l~~a-v~~FE~~HP~l~~~lr~i 76 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAEEDEAEAEDESLVDRLNEA-VERFEASHPKLAGILRNI 76 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccccchhHHHHHHHH-HHHHHHhCCcHHHHHHHH
Confidence 4567889999999877766655554443333444444330 01122222222221 122336789999988764
No 180
>CHL00024 psbI photosystem II protein I
Probab=48.16 E-value=12 Score=24.11 Aligned_cols=11 Identities=45% Similarity=1.062 Sum_probs=9.0
Q ss_pred HHHHHHHhcCC
Q 025427 243 TRIICLFVFGF 253 (253)
Q Consensus 243 ~~~~~~~~~~~ 253 (253)
+-+++||+|||
T Consensus 13 ~ffvsLFifGF 23 (36)
T CHL00024 13 IFFVSLFIFGF 23 (36)
T ss_pred HHHHHHHHccc
Confidence 44689999998
No 181
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=46.58 E-value=2.5e+02 Score=26.22 Aligned_cols=152 Identities=15% Similarity=0.258 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhc--CCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS--GSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s--~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
++..-.|++--.|..++-++.|- .|+...|+ ..+.+.++...+... ..+..-...+...++..-..
T Consensus 27 ~v~rffkLFPlig~~eeGL~~Y~---~ylc~~i~-~~~r~~~~~~~~~~~~~~~~~~~~~~lt~LFe~ia~i-------- 94 (331)
T PF08318_consen 27 QVTRFFKLFPLIGQEEEGLDLYS---KYLCDIIA-EQSRKLLDSATSGSSDSRSPVFYADALTKLFEHIATI-------- 94 (331)
T ss_pred HHHHHHHHhhhcCCcHHHHHHHH---HHHHHHHH-HHHHHHHHhhccccccccccccHHHHHHHHHHHHHHH--------
Confidence 34455566666677777666663 33312222 334444444333221 11211122233333333333
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH-----
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA----- 164 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a----- 164 (253)
+.+...++.-|+..+. ...+|..|+++|+.- ...+++.+.=+-++...+.++..-......+
T Consensus 95 --i~~h~~lI~~~yG~~~---~~~vi~~Lq~E~D~q--------~~~Ild~f~~~R~l~~~~~~i~~~~~~~~~~~~~~~ 161 (331)
T PF08318_consen 95 --IEQHQPLIEKYYGPGY---MVYVIEKLQKECDLQ--------AGIILDTFMDERRLDRKLQDIQSYNFSFLVKNSGRS 161 (331)
T ss_pred --HHHccHHHHHHcCCcH---HHHHHHHHHHHHHHH--------HHHHHHHHHHHhcHHHHHHHHHhhhhhhhccccccc
Confidence 3344456666776665 568899999998553 5567776666665555444443322211111
Q ss_pred ----------HhhhccCCchh-HHHHHHhhccccc
Q 025427 165 ----------LAIKSAIPHPR-IMGIIRECGGKMH 188 (253)
Q Consensus 165 ----------~~~~~aI~~P~-i~g~I~e~~Gkl~ 188 (253)
..-...-+.|+ +-+.|.|.+++++
T Consensus 162 ~~~~~~~~~~~~~~~~~~d~reld~lL~Eis~i~~ 196 (331)
T PF08318_consen 162 SSSSSRAASSSQSEDEGIDPRELDALLNEISLILQ 196 (331)
T ss_pred cccccccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 01111234466 7888999998865
No 182
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=45.46 E-value=1.5e+02 Score=31.80 Aligned_cols=96 Identities=15% Similarity=0.158 Sum_probs=67.5
Q ss_pred HHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh-hhccCCchhHHH
Q 025427 100 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA-IKSAIPHPRIMG 178 (253)
Q Consensus 100 ~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~-~~~aI~~P~i~g 178 (253)
-+..-.+.|.+|..+|.++-..++.+ ++...+.++.|-.++--++-...++..++-+.-+-+.. ...+-|-++++.
T Consensus 423 W~~~s~~r~~ea~~li~~l~~~l~~~---~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 423 WLLASQHRLAEAETLIARLEHFLKAP---MHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHccChHHHHHHHHHHHHHhCcC---cccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 34456789999999999999999998 45556999999999999998888898887776666653 333333333332
Q ss_pred HHHhhccccccccccHHHHHHH
Q 025427 179 IIRECGGKMHMAERQWADAATD 200 (253)
Q Consensus 179 ~I~e~~Gkl~~~ekdy~tA~s~ 200 (253)
-. .-|-.++..|+|.+|..+
T Consensus 500 ~s--v~~~a~~~~G~~~~Al~~ 519 (894)
T COG2909 500 LS--VLGEAAHIRGELTQALAL 519 (894)
T ss_pred hh--hhhHHHHHhchHHHHHHH
Confidence 22 224455566666666554
No 183
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=45.42 E-value=3.4e+02 Score=27.44 Aligned_cols=134 Identities=12% Similarity=0.102 Sum_probs=90.3
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
++...=++.+|.+.+... |...+++..+.++..+ . .....=...+.+..+...+|...+-..+++.-..++.-
T Consensus 100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~---~---~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~ 172 (608)
T PF10345_consen 100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG---H---SAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR 172 (608)
T ss_pred HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC---c---hhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc
Confidence 455557899999998888 9999999888887641 2 22222333355666655589999999999999999876
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHH---hcccccccC--hhhHHHHHHHH--HHHHhccC
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEA---FKNYDEAGN--QRRIQCLKYGF--YLHLLFLI 232 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EA---Fe~yde~g~--~~a~~~LKYlv--L~~iL~~s 232 (253)
.+|.+........|.+|...+..+.+....-++ .++++-.|+ +..+.++.-|+ .|.|..+.
T Consensus 173 ~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~ 240 (608)
T PF10345_consen 173 GDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGD 240 (608)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCC
Confidence 779998888888899998877665555544444 666632233 44455544442 34444443
No 184
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=44.40 E-value=2e+02 Score=24.50 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=85.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
..+-.+-+.|+.+.|++...+-...|++-. + +|---.|.+.-.++..++-.=+.+|...++.-+-..-
T Consensus 48 l~~valaE~g~Ld~AlE~F~qal~l~P~ra--S----------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtac 115 (175)
T KOG4555|consen 48 LKAIALAEAGDLDGALELFGQALCLAPERA--S----------AYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTAC 115 (175)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhcccch--H----------hhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHH
Confidence 445566789999999999999999985532 1 2444567777788888888889999888887533333
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHH----HHHHHHHHhc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL----KYGFYLHLLF 230 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~L----KYlvL~~iL~ 230 (253)
|+ --+-|.++--.+|-+.|..+|=-| .+.||+-+..-| .|-.||+-|.
T Consensus 116 qa--~vQRg~lyRl~g~dd~AR~DFe~A----A~LGS~FAr~QLV~lNPYAAlCN~ML 167 (175)
T KOG4555|consen 116 QA--FVQRGLLYRLLGNDDAARADFEAA----AQLGSKFAREQLVELNPYAALCNQML 167 (175)
T ss_pred HH--HHHHHHHHHHhCchHHHHHhHHHH----HHhCCHHHHHHHHhcChHHHHHHHHH
Confidence 33 345688888888999999997555 447998555544 6999998775
No 185
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=43.81 E-value=1.2e+02 Score=29.88 Aligned_cols=146 Identities=14% Similarity=0.230 Sum_probs=74.7
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcC-------CCCcchhHHHHHHHHHHH---------HH
Q 025427 19 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG-------SASQNFSLLREFYQTTLK---------AL 82 (253)
Q Consensus 19 l~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~-------~~~~~~~~l~~~y~~~~e---------~i 82 (253)
...-+|+++++++.++ .-.++ |+||+....++++-+-. -.- ++| + +.=+++.++ ..
T Consensus 270 ~av~~~d~~~v~~~i~-~~~ll-~~i~~~~~~~i~~fL~~-~G~~e~AL~~~~D--~---~~rFeLAl~lg~L~~A~~~a 341 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIA-ASNLL-PNIPKDQGQSIARFLEK-KGYPELALQFVTD--P---DHRFELALQLGNLDIALEIA 341 (443)
T ss_dssp HHHHTT-HHH-----H-HHHTG-GG--HHHHHHHHHHHHH-TT-HHHHHHHSS---H---HHHHHHHHHCT-HHHHHHHC
T ss_pred HHHHcCChhhhhhhhh-hhhhc-ccCChhHHHHHHHHHHH-CCCHHHHHhhcCC--h---HHHhHHHHhcCCHHHHHHHH
Confidence 4556789999887774 23445 77777777666644222 110 111 1 122233332 21
Q ss_pred HHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 83 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 83 ~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
++..+...| -+|+..-+..|+++-|.+..+..... + + -+=+|+..+|..+++.+-.
T Consensus 342 ~~~~~~~~W----~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~---~---------L~lLy~~~g~~~~L~kl~~ 397 (443)
T PF04053_consen 342 KELDDPEKW----KQLGDEALRQGNIELAEECYQKAKDF--------S---G---------LLLLYSSTGDREKLSKLAK 397 (443)
T ss_dssp CCCSTHHHH----HHHHHHHHHTTBHHHHHHHHHHCT-H--------H---H---------HHHHHHHCT-HHHHHHHHH
T ss_pred HhcCcHHHH----HHHHHHHHHcCCHHHHHHHHHhhcCc--------c---c---------cHHHHHHhCCHHHHHHHHH
Confidence 112222233 27888888999988887666554433 1 2 2235778899999998888
Q ss_pred HHHh---hhccCCchhHHHHHHhhccccccccccHHHH
Q 025427 163 KALA---IKSAIPHPRIMGIIRECGGKMHMAERQWADA 197 (253)
Q Consensus 163 ~a~~---~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA 197 (253)
.|.. ...+-.|--+.|.+++|- .+...-+.+..|
T Consensus 398 ~a~~~~~~n~af~~~~~lgd~~~cv-~lL~~~~~~~~A 434 (443)
T PF04053_consen 398 IAEERGDINIAFQAALLLGDVEECV-DLLIETGRLPEA 434 (443)
T ss_dssp HHHHTT-HHHHHHHHHHHT-HHHHH-HHHHHTT-HHHH
T ss_pred HHHHccCHHHHHHHHHHcCCHHHHH-HHHHHcCCchHH
Confidence 7763 233334477888888887 444455555544
No 186
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=43.13 E-value=1.1e+02 Score=30.11 Aligned_cols=88 Identities=16% Similarity=0.185 Sum_probs=65.3
Q ss_pred hcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhc
Q 025427 105 MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECG 184 (253)
Q Consensus 105 ~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~ 184 (253)
......|.++|++.++.-++ +.+ ....+.+++...+|++++-+.|..|...++. -|.+....---=
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~---------s~l---fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN---------SAL---FLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC---------cHH---HHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHH
Confidence 45567778888888877443 222 2567889999999999999999988744433 266666666666
Q ss_pred cccccccccHHHHHHHHHHHhc
Q 025427 185 GKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 185 Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
|--|+.-.||++|..+|-.-.+
T Consensus 312 ~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHchHHHHHHHHHHHHh
Confidence 7889999999999988776554
No 187
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.73 E-value=3.5e+02 Score=26.87 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=78.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-C-Cch
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA-I-PHP 174 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a-I-~~P 174 (253)
-++.-|++-|+++.|.+.=...+..|... -+.+....-=|++.--++|+.++-..-.+|....-+ . --+
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q 225 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSA---------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQ 225 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcch---------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHH
Confidence 56777889999999999999999999763 233444444455555667766655444444333100 0 012
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHh-cccc--cccChhhHHHHHHHHHHHHh
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAF-KNYD--EAGNQRRIQCLKYGFYLHLL 229 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAF-e~yd--e~g~~~a~~~LKYlvL~~iL 229 (253)
.+-+.|+.-.|.-|...|+|+.|-.+|.-+= ...| +.=.|.-+ --|-.||-|=
T Consensus 226 ~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv--~iYggLcALA 281 (466)
T KOG0686|consen 226 EVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDV--AIYGGLCALA 281 (466)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhh--HHHHhhHhhc
Confidence 2333488999999999999999999998763 3333 22233333 3488888764
No 188
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=42.34 E-value=1.9e+02 Score=28.32 Aligned_cols=91 Identities=16% Similarity=0.234 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhh---hhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-h
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKS---AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-E 88 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~---~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~-e 88 (253)
||.-+.-||++|+|+++.++|..-...- | ...-|++---++ +..+ .+..+-+..|-+ +
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk--~K~F---------------A~AE~DC~~AiaLd 161 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLK--QKSF---------------AQAEEDCEAAIALD 161 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHH--HHHH---------------HHHHHhHHHHHHhh
Confidence 5677788999999999999999776554 3 222222221111 1111 122222222333 5
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
|.+.|..-|.+..-...|+..+|.+--..+++.
T Consensus 162 ~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 162 KLYVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 788888888888877777777776544444443
No 189
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=42.17 E-value=3.2e+02 Score=29.30 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=48.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhh-----hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 15 QTVKLYYRLGKYKEMMDAYREMLTYIKSAV-----TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~ll~~~~~~v-----~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
+.+.+|--.|+|+.+++++..++.-.=... .+.+....+.++.|.+..-++......-..+.+.+..+
T Consensus 640 ~sI~LY~lag~yd~al~link~LS~~l~~~~~~~~n~erl~~La~~~~~~y~~~~~~~~~~~~~t~~lLl~~~------- 712 (835)
T KOG2168|consen 640 DAILLYHLAGDYDKALELINKLLSQVLHSPTLGQSNKERLGDLALSMNDIYESNKGDSAKVVVKTLSLLLDLV------- 712 (835)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccCCcchhhHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHH-------
Confidence 445666666777777777666554321222 45566666666666555333322111111122222111
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
-+-=++..|++++|+.+|+.|+--
T Consensus 713 --------~~f~~y~~~~~e~aL~~le~l~Li 736 (835)
T KOG2168|consen 713 --------SFFDLYHNGEWEEALSILEHLDLI 736 (835)
T ss_pred --------HHHHHHhhhHHHHHHHHHHHHhcc
Confidence 112235678899999998887654
No 190
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=41.05 E-value=3.5e+02 Score=26.40 Aligned_cols=159 Identities=17% Similarity=0.116 Sum_probs=95.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHH
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 92 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~l 92 (253)
.|++|.|.+.|.+.++-.-+++.++-. +.+. =...+|.- .++.+ +. ....+..+.++.-..+-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~-~~~dTfllLskvY----~ridQ----P~----~AL~~~~~gld~fP~~VT~- 292 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF-PHPDTFLLLSKVY----QRIDQ----PE----RALLVIGEGLDSFPFDVTY- 292 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC-CchhHHHHHHHHH----HHhcc----HH----HHHHHHhhhhhcCCchhhh-
Confidence 699999999999999998888888776 5432 22233322 22221 11 2223444444322222222
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
.+-.|+++=..+++++|.++-+.+.+. + +.-+|-++.=---|+--+|..-+-..|+..+. -.++
T Consensus 293 --l~g~ARi~eam~~~~~a~~lYk~vlk~-------~-----~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq--mG~~ 356 (478)
T KOG1129|consen 293 --LLGQARIHEAMEQQEDALQLYKLVLKL-------H-----PINVEAIACIAVGYFYDNNPEMALRYYRRILQ--MGAQ 356 (478)
T ss_pred --hhhhHHHHHHHHhHHHHHHHHHHHHhc-------C-----CccceeeeeeeeccccCCChHHHHHHHHHHHH--hcCC
Confidence 237789999999999999988887766 1 12233333333334444455555567776554 4577
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.|.+---|-+|. +.-++|+-+.+.|--|.-
T Consensus 357 speLf~NigLCC----~yaqQ~D~~L~sf~RAls 386 (478)
T KOG1129|consen 357 SPELFCNIGLCC----LYAQQIDLVLPSFQRALS 386 (478)
T ss_pred ChHHHhhHHHHH----HhhcchhhhHHHHHHHHh
Confidence 788877777774 566667777777666654
No 191
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=40.18 E-value=67 Score=24.35 Aligned_cols=47 Identities=21% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHH
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 142 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~ 142 (253)
.....+|..++..|+|.+|.+.+=++.+.=+..+ +|.. +..+++|+.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~--~~~a-r~~ll~~f~ 69 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYE--DDAA-RKRLLDIFE 69 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC--CCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc--ccHH-HHHHHHHHH
Confidence 4667899999999999999877766666633331 3433 444555543
No 192
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=39.89 E-value=4.9e+02 Score=27.73 Aligned_cols=140 Identities=20% Similarity=0.292 Sum_probs=76.7
Q ss_pred HHHHHhhhcchhHHHHHHH---------HHHHHcccCCCCchhhh--cchH--HHHHHHHHHHHHhhcCHHHHHHHHHH-
Q 025427 98 LCKIWFDMGEYGRMSKILK---------ELHKSCQREDGTDDQKK--GSQL--LEVYAIEIQMYTETKNNKKLKQLYQK- 163 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~---------~L~~~l~~~~~~dD~~k--k~~L--lEv~~lE~~~y~~~~n~~klk~~y~~- 163 (253)
-|.+++..|+.++|..++. ++-+.+.+.+ -|+.+ ..++ +.-..|-++++-+++|.+.+-++-..
T Consensus 709 AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e--re~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~ 786 (1081)
T KOG1538|consen 709 AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE--REPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVET 786 (1081)
T ss_pred HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh--hhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeec
Confidence 4678888899988866543 3334433321 01000 0111 11123344555555655554443222
Q ss_pred -----HHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHHHHHHHHHHhccCCCchH
Q 025427 164 -----ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYGFYLHLLFLISIYFL 237 (253)
Q Consensus 164 -----a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~LKYlvL~~iL~~s~id~~ 237 (253)
|-.++- -||...-. +|+.-++|-.-..-|-||=+.|..+|. .+|.++|+-+.=..+-.+.=.|-.
T Consensus 787 ~~W~eAFalAe--~hPe~~~d-------Vy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~ 857 (1081)
T KOG1538|consen 787 QRWDEAFALAE--KHPEFKDD-------VYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAA 857 (1081)
T ss_pred ccchHhHhhhh--hCcccccc-------ccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccch
Confidence 222222 24554433 345555555555567777777888987 589999998776666655556666
Q ss_pred HHHHHHHHHHH
Q 025427 238 YLYFLTRIICL 248 (253)
Q Consensus 238 ~~~~~~~~~~~ 248 (253)
+-|++..--||
T Consensus 858 y~yw~L~~q~L 868 (1081)
T KOG1538|consen 858 YYYWMLSMQCL 868 (1081)
T ss_pred hHHHHhhhhhh
Confidence 77766554444
No 193
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=39.62 E-value=8.9 Score=24.75 Aligned_cols=11 Identities=45% Similarity=1.062 Sum_probs=8.5
Q ss_pred HHHHHHHhcCC
Q 025427 243 TRIICLFVFGF 253 (253)
Q Consensus 243 ~~~~~~~~~~~ 253 (253)
.-+++||+|||
T Consensus 13 ~ffv~LFifGf 23 (36)
T PF02532_consen 13 IFFVSLFIFGF 23 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhccc
Confidence 34678999996
No 194
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=39.40 E-value=3.1e+02 Score=26.16 Aligned_cols=116 Identities=20% Similarity=0.226 Sum_probs=76.0
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh--cCHHHHHHHHHHHHhh
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET--KNNKKLKQLYQKALAI 167 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~--~n~~klk~~y~~a~~~ 167 (253)
.|-....+.+.-+++.++|..|..++.++.+.+.. ++ . ++.+.-=++.|.+= -++.++...+......
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~----~~---~---~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRRLPG----RE---E---YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc----hh---h---HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44466779999999999999999999999986321 12 2 56666666666554 3677777777765443
Q ss_pred hccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC--hhhHHHHHHHHHHHHhccC
Q 025427 168 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN--QRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 168 ~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~--~~a~~~LKYlvL~~iL~~s 232 (253)
... .-.++++-.+.....++++++....+ ..+..-+-|.+|..++.|.
T Consensus 199 ~~~-----------------l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA 248 (379)
T PF09670_consen 199 DKA-----------------LNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANA 248 (379)
T ss_pred hhh-----------------hHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHH
Confidence 222 12345556677777778877776532 3333334677888887653
No 195
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.37 E-value=2.7e+02 Score=26.49 Aligned_cols=121 Identities=14% Similarity=0.154 Sum_probs=81.2
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
.|--.+|-|++.++..+|+++.+.+++++.+=.+ ..+-. ..++.+.+..+.... -+++..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~-e~~~~----~~F~~~~~~~~~g~~---------------rL~~~~ 96 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF-ERAFH----PSFSPFRSNLTSGNC---------------RLDYRR 96 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHH----HHhhhhhcccccCcc---------------ccCCcc
Confidence 3556789999999999999999999999888666 32111 122222233322111 022222
Q ss_pred h-hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh
Q 025427 87 N-ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET 151 (253)
Q Consensus 87 ~-erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~ 151 (253)
. .|-|+..-.|.+..+-.+|-+.-|++.-+=|.+- |..+|+.--.+.++-|||-++-|.-+
T Consensus 97 ~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL----dp~~DP~g~ll~ID~~ALrs~~y~~L 158 (360)
T PF04910_consen 97 PENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL----DPDEDPLGVLLFIDYYALRSRQYQWL 158 (360)
T ss_pred ccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCCCCcchhHHHHHHHHHhcCCHHHH
Confidence 2 4778888889999999999999999888877776 22246666667788888877666433
No 196
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.31 E-value=3.6e+02 Score=26.00 Aligned_cols=194 Identities=12% Similarity=0.124 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh--
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-- 86 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~-- 86 (253)
.-|-+..++.++++.|+++++-+.++.+.. |-.--|+...-+|-.+.++.-++.+ ..+...+.++.+..++.--
T Consensus 51 ~~kvl~~i~dLl~S~~~~~~Lneql~~L~k--KhGQlk~sI~~MIq~vmEylKg~~d--l~t~i~~ietlr~VtEgkIFv 126 (439)
T COG5071 51 NTKVLIYIADLLFSAGDFQGLNEQLVSLFK--KHGQLKQSITSMIQHVMEYLKGIDD--LKTKINLIETLRTVTEGKIFV 126 (439)
T ss_pred HHHHHHHHHHHHhhcCchhhhhhHHHHHHH--HcchHHHHHHHHHHHHHHhccCccc--ccchHhHHHHHHHHhcCceEE
Confidence 345667788888888888877666543321 1123344445566666666665543 4456666666666544211
Q ss_pred -hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 87 -NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 87 -~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
.||..+-+ -|...+=+.|+...|..++-++.-+--.. .+ -+-.+--++-+.+++-.-+|+.++--.-.+.+
T Consensus 127 EvERariT~--~L~~ikee~Gdi~sA~Dilcn~pVETygs--~~----~Sekv~fiLEQ~rL~vl~~Dy~~A~~~~kKI~ 198 (439)
T COG5071 127 EVERARLTQ--LLSQIKEEQGDIKSAQDILCNEPVETYGS--FD----LSEKVAFILEQVRLFLLRSDYYMASTYTKKIN 198 (439)
T ss_pred ehhHHHHHH--HHHHHHHHhcchhHHHHHHhcCchhhccc--hh----HHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 23433322 45566778899999988876665442111 12 23333344445566655566655544433333
Q ss_pred hhhccCCchhHH---HHHHhhccccccccccHHHHHHHHHHHhcccccccChhh
Q 025427 166 AIKSAIPHPRIM---GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 216 (253)
Q Consensus 166 ~~~~aI~~P~i~---g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a 216 (253)
+=.--= |..+ =.-=+.-=++|...+.|=.|..|+-+-+..-.-.|+|.+
T Consensus 199 KK~Fe~--~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~Ak 250 (439)
T COG5071 199 KKFFEK--EDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPAK 250 (439)
T ss_pred HHHhcc--ccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCccc
Confidence 211111 2221 122234446778888898888888777665544466543
No 197
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=38.63 E-value=32 Score=21.16 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHH
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMM 30 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~ 30 (253)
+-..|+.+++.+|...|+++++.
T Consensus 11 ~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 11 NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCHHHHHHHHHHHHHCcCHHhhc
Confidence 34578999999999999999875
No 198
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=38.05 E-value=5.6e+02 Score=27.87 Aligned_cols=183 Identities=15% Similarity=0.179 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCC-CCcchhHH--HHHHHHHHHHHHHhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS-ASQNFSLL--REFYQTTLKALEEAK 86 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~-~~~~~~~l--~~~y~~~~e~i~~a~ 86 (253)
+---+.++++-...|+.--+-.+| .-+ ..|.|++.---|+.|-|..|.. .+...+|. ..++.+.-... ..
T Consensus 477 ~amw~~laelale~~nl~iaercf----aai-~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~kkf--k~ 549 (1636)
T KOG3616|consen 477 EAMWIRLAELALEAGNLFIAERCF----AAI-GDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEKKF--KE 549 (1636)
T ss_pred HHHHHHHHHHHHHhccchHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhh--hH
Confidence 333455666666666554443333 344 5677777777778888877742 22223222 11111211111 12
Q ss_pred hhhhHHHHhh--hHHHHHhhhcchhHHHHHH--------HHHHHH----cccCCCCchhhhcchHHHH---HHHHHHHHH
Q 025427 87 NERLWFKTNL--KLCKIWFDMGEYGRMSKIL--------KELHKS----CQREDGTDDQKKGSQLLEV---YAIEIQMYT 149 (253)
Q Consensus 87 ~erl~lk~~l--kLa~l~l~~~~y~~a~~li--------~~L~~~----l~~~~~~dD~~kk~~LlEv---~~lE~~~y~ 149 (253)
.|++||.||- .-...|-+.+++++|+.+- .+|+++ +..-+. |+ |-.-|-|- -+--|++|.
T Consensus 550 ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~q-d~--ka~elk~sdgd~laaiqlyi 626 (1636)
T KOG3616|consen 550 AEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQ-DE--KAAELKESDGDGLAAIQLYI 626 (1636)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCc-hh--hhhhhccccCccHHHHHHHH
Confidence 4689998887 6677788888888886543 333322 211110 00 00000000 123467777
Q ss_pred hhcCHHH-HHHHHHHHHhhhcc-----CCchhHHHHHHhhccccccccccHHHHHHHHH
Q 025427 150 ETKNNKK-LKQLYQKALAIKSA-----IPHPRIMGIIRECGGKMHMAERQWADAATDFF 202 (253)
Q Consensus 150 ~~~n~~k-lk~~y~~a~~~~~a-----I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~ 202 (253)
+-+-..+ ++++++...-.++. |....|.|++=+-.|-++-.-+|+++|..+|-
T Consensus 627 ka~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fk 685 (1636)
T KOG3616|consen 627 KAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFK 685 (1636)
T ss_pred HcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHH
Confidence 7665444 56666655444433 44577899999999999888899999987764
No 199
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.33 E-value=1.3e+02 Score=28.71 Aligned_cols=38 Identities=16% Similarity=0.275 Sum_probs=31.1
Q ss_pred HhhhhhhHHHH---hh--hHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 84 EAKNERLWFKT---NL--KLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 84 ~a~~erl~lk~---~l--kLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
||.++|-.|++ ++ +-|+-|++.|.+++|.++.+.+++.
T Consensus 266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltl 308 (361)
T COG3947 266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTL 308 (361)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhc
Confidence 88877655543 23 8999999999999999999998876
No 200
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=37.24 E-value=2.5e+02 Score=30.41 Aligned_cols=172 Identities=18% Similarity=0.201 Sum_probs=89.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHH---HHHHHHhcCCCCcchhHHHHHHHHHHHHHH----HhhhhhhH
Q 025427 19 LYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI---NNIMDFVSGSASQNFSLLREFYQTTLKALE----EAKNERLW 91 (253)
Q Consensus 19 l~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i---~~ild~~s~~~~~~~~~l~~~y~~~~e~i~----~a~~erl~ 91 (253)
-+.+.|++|.+...|-+-.-.+ ..|--+-.+|-- -.|+|++. +.+ .-..-|....+.-. .-..|+||
T Consensus 715 hl~~~~q~daainhfiea~~~~-kaieaai~akew~kai~ildniq---dqk--~~s~yy~~iadhyan~~dfe~ae~lf 788 (1636)
T KOG3616|consen 715 HLEQIGQLDAAINHFIEANCLI-KAIEAAIGAKEWKKAISILDNIQ---DQK--TASGYYGEIADHYANKGDFEIAEELF 788 (1636)
T ss_pred HHHHHHhHHHHHHHHHHhhhHH-HHHHHHhhhhhhhhhHhHHHHhh---hhc--cccccchHHHHHhccchhHHHHHHHH
Confidence 4567789999999888877777 444433333322 24566554 211 11233333332221 12246788
Q ss_pred HHHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHH--------HHHHHHHHhhcCHHHHHHHH
Q 025427 92 FKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVY--------AIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 92 lk~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~--------~lE~~~y~~~~n~~klk~~y 161 (253)
.+..+ --+..|-+.|++.+|-++-.+ |-.+ ++ +-..++..-. +---|+|.-.+...|+-+.|
T Consensus 789 ~e~~~~~dai~my~k~~kw~da~kla~e----~~~~---e~-t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 789 TEADLFKDAIDMYGKAGKWEDAFKLAEE----CHGP---EA-TISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMY 860 (1636)
T ss_pred HhcchhHHHHHHHhccccHHHHHHHHHH----hcCc---hh-HHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHH
Confidence 88777 445566688899888765544 4333 33 1112221111 11112333334444444444
Q ss_pred HHHHhhh-----ccCCchhHHHHHHhhccccccccccHHHHHHHHHHH
Q 025427 162 QKALAIK-----SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 162 ~~a~~~~-----~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EA 204 (253)
.+--.-. ..-+||-.+-.-+.-=|+-+-.+||-+.|-..|.||
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 4322111 112567766666666666666777777777776665
No 201
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=37.05 E-value=17 Score=34.76 Aligned_cols=67 Identities=30% Similarity=0.493 Sum_probs=44.3
Q ss_pred cchHHHHHHHHHHHHHhhc---C--HHHHHHHH----HHHHhhhcc-CCchhHHHHHHhhcccccccc----ccHHHHHH
Q 025427 134 GSQLLEVYAIEIQMYTETK---N--NKKLKQLY----QKALAIKSA-IPHPRIMGIIRECGGKMHMAE----RQWADAAT 199 (253)
Q Consensus 134 k~~LlEv~~lE~~~y~~~~---n--~~klk~~y----~~a~~~~~a-I~~P~i~g~I~e~~Gkl~~~e----kdy~tA~s 199 (253)
++..+.=..+|-.+.+.-+ | +..+-+++ .+|-+++.. |..-|+-|.||.|.|++|+++ ..|+++-+
T Consensus 295 gssil~ra~~EhNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe~~e~l~~wdkqi~ 374 (399)
T KOG1497|consen 295 GSSILDRAVIEHNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFEDREELPQWDKQIQ 374 (399)
T ss_pred cchhhhhHHHHHhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeecchhhhhhhhHHHH
Confidence 5555555666655444332 2 34444444 466676655 777999999999999999987 55776655
Q ss_pred H
Q 025427 200 D 200 (253)
Q Consensus 200 ~ 200 (253)
-
T Consensus 375 s 375 (399)
T KOG1497|consen 375 S 375 (399)
T ss_pred H
Confidence 3
No 202
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.48 E-value=3.1e+02 Score=24.33 Aligned_cols=85 Identities=13% Similarity=-0.013 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHHHHHHHHHHhcc
Q 025427 153 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYGFYLHLLFL 231 (253)
Q Consensus 153 n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~LKYlvL~~iL~~ 231 (253)
.....-.++.+|...-...-++|+...|...=|.-|+..|||++|..+|--+-..|-..|= .---.+|..+.-|.-.++
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 3445667777877766666779999999999999999999999999999999888876663 567788899999988888
Q ss_pred CCCchH
Q 025427 232 ISIYFL 237 (253)
Q Consensus 232 s~id~~ 237 (253)
+..+..
T Consensus 233 ~~~~~l 238 (247)
T PF11817_consen 233 DVEDYL 238 (247)
T ss_pred CHHHHH
Confidence 766644
No 203
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=35.78 E-value=5.7e+02 Score=27.25 Aligned_cols=102 Identities=21% Similarity=0.334 Sum_probs=60.4
Q ss_pred hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 85 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 85 a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
.+|.-+|| -.++.-+..|.-+.|..++..-+++|+.. +.+-.|-+-+|- .-+.-.|.-.++.++
T Consensus 750 Pk~~~lwl----e~Ir~ElR~gn~~~a~~lmakALQecp~s--------g~LWaEaI~le~----~~~rkTks~DALkkc 813 (913)
T KOG0495|consen 750 PKNALLWL----ESIRMELRAGNKEQAELLMAKALQECPSS--------GLLWAEAIWLEP----RPQRKTKSIDALKKC 813 (913)
T ss_pred CCcchhHH----HHHHHHHHcCCHHHHHHHHHHHHHhCCcc--------chhHHHHHHhcc----CcccchHHHHHHHhc
Confidence 33444664 23455566788888888888888888764 444344333332 222223333444432
Q ss_pred HhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC
Q 025427 165 LAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 165 ~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
-| |.+.-.| |+|+-.|+.+++|..-|--|-+-=...||
T Consensus 814 -------e~dphVllai----a~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 814 -------EHDPHVLLAI----AKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred -------cCCchhHHHH----HHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 23 6544333 67788999999999999888764333344
No 204
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.45 E-value=3.3e+02 Score=25.71 Aligned_cols=87 Identities=17% Similarity=0.206 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh--h-hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA--V-TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~--v-~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
..||.=+-=..+.++|+++++.|++-+.+. |. | -=|+++--. . ....+.-++-|..+|. -
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~-----~--------Lg~~~~AVkDce~Al~---i 144 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYS-----K--------LGEYEDAVKDCESALS---I 144 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHH-----H--------hcchHHHHHHHHHHHh---c
Confidence 346666777889999999999999999998 53 2 112222111 0 1011122233444333 1
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHH
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKI 114 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~l 114 (253)
+--+.|.-.||...|+..|+|.+|.+-
T Consensus 145 Dp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 145 DPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred ChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 234556667899999999999998754
No 205
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=34.83 E-value=4.2e+02 Score=25.46 Aligned_cols=54 Identities=11% Similarity=0.167 Sum_probs=35.0
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
|-..+--.+.+.+.++|.++..+++.+++.+... ...+++|+...++.+...+.
T Consensus 117 Lv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F-----------------------~~yksi~~I~~L~~~i~~l~ 170 (383)
T PF04100_consen 117 LVTAVEQLKELAKKRQYKEIASLLQAVKELLEHF-----------------------KPYKSIPQIAELSKRIDQLQ 170 (383)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH-----------------------HcccCcHHHHHHHHHHHHHH
Confidence 3344466677788888888877777776664333 23566777777776654443
No 206
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=34.63 E-value=4e+02 Score=28.19 Aligned_cols=201 Identities=12% Similarity=0.142 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh--hhhHHHHHHHHHHhcCCCCcchhHHHHHH-HHHHHHHHHhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIMDFVSGSASQNFSLLREFY-QTTLKALEEAKNE 88 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k--a~~~K~i~~ild~~s~~~~~~~~~l~~~y-~~~~e~i~~a~~e 88 (253)
+...-+..+++.++.+++.+-|..+++-= ..++| .-....-..+-|.+++.|+.- .+..+ .+.+.-|.--..
T Consensus 171 ~~eeyie~L~~~d~~~eaa~~la~vln~d-~f~sk~gkSn~qlw~elcdlis~~p~~~---~slnvdaiiR~gi~rftD- 245 (835)
T KOG2047|consen 171 AREEYIEYLAKSDRLDEAAQRLATVLNQD-EFVSKKGKSNHQLWLELCDLISQNPDKV---QSLNVDAIIRGGIRRFTD- 245 (835)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhcCch-hhhhhcccchhhHHHHHHHHHHhCcchh---cccCHHHHHHhhcccCcH-
Confidence 34556677888999999999998888644 33443 124556677788888766521 11111 233332221111
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHH--HHHHHHhhc-------C------
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI--EIQMYTETK-------N------ 153 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~l--E~~~y~~~~-------n------ 153 (253)
-|.+.=+.||.-|+..|.|++|-.+..+-.+.+-.. .| =+++.+.|+. |+-+...+. |
T Consensus 246 -q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv---rD---Ft~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~d 318 (835)
T KOG2047|consen 246 -QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV---RD---FTQIFDAYAQFEESCVAAKMELADEESGNEEDDVD 318 (835)
T ss_pred -HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh---hh---HHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhh
Confidence 233333579999999999999998888877776665 56 5566666653 222222221 1
Q ss_pred HHHHHHHHHHHHh----hhccCCc---hhHHHHHHhhccccccccccHHHHHHHHHHHhccccc---ccChhhHHHHHHH
Q 025427 154 NKKLKQLYQKALA----IKSAIPH---PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE---AGNQRRIQCLKYG 223 (253)
Q Consensus 154 ~~klk~~y~~a~~----~~~aI~~---P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde---~g~~~a~~~LKYl 223 (253)
+.=.=+-+.+... ..|++.. |.. +.+---.+.+.+++..+-.+-|-||-++-|. .|+|.++.|
T Consensus 319 l~~~~a~~e~lm~rr~~~lNsVlLRQn~~n---V~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~---- 391 (835)
T KOG2047|consen 319 LELHMARFESLMNRRPLLLNSVLLRQNPHN---VEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWV---- 391 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHhcCCcc---HHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHH----
Confidence 1001112222211 2233221 222 2222334567788888888888888888875 377776644
Q ss_pred HHHHHhcc
Q 025427 224 FYLHLLFL 231 (253)
Q Consensus 224 vL~~iL~~ 231 (253)
-+++..-+
T Consensus 392 ~faklYe~ 399 (835)
T KOG2047|consen 392 EFAKLYEN 399 (835)
T ss_pred HHHHHHHh
Confidence 55665544
No 207
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.50 E-value=3.3e+02 Score=24.19 Aligned_cols=60 Identities=25% Similarity=0.317 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhhcc-CC--chhHHHHHHhhccccc----cccccHHHHHHHHHHHhcccccccC
Q 025427 154 NKKLKQLYQKALAIKSA-IP--HPRIMGIIRECGGKMH----MAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~a-I~--~P~i~g~I~e~~Gkl~----~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
..++..+|..|..++.. ++ ||.-.|.+--.+=-+| -.++-.+-|...|=+|....+..++
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e 208 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSE 208 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHT
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccch
Confidence 57899999999999888 43 5999999887763322 2344445667788888888776543
No 208
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=34.33 E-value=1.3e+02 Score=23.34 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=24.2
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHcccCCCC
Q 025427 99 CKIWFDMGEYGRMSKILKELHKSCQREDGT 128 (253)
Q Consensus 99 a~l~l~~~~y~~a~~li~~L~~~l~~~~~~ 128 (253)
+.+|+..++.+....+|.+||+.+++.|.+
T Consensus 21 s~~y~~~~n~~~m~~~L~pLh~~l~k~PeT 50 (100)
T PF08771_consen 21 SRLYFGENNVEKMFKILEPLHEMLEKGPET 50 (100)
T ss_dssp HHHHHTTT-HHHHHHHHHHHHHHHHHS-SS
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHcCCCCC
Confidence 457788999999999999999999996543
No 209
>PF09455 Cas_DxTHG: CRISPR-associated (Cas) DxTHG family; InterPro: IPR019016 Cas are a group of proteins associated with clustered regularly interspaced short palindromic repeats - CRISPS - of DNA found in nearly half of bacterial and archaeal genomes. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance []. The exact molecular function of this family is currently unknown. ; PDB: 2I71_B.
Probab=33.34 E-value=2e+02 Score=26.65 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHH
Q 025427 72 REFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKE 117 (253)
Q Consensus 72 ~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~ 117 (253)
..+.+-..+.+.+...+...+..-++++..|++.|.|..|..+++|
T Consensus 271 ~~~l~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~l~~E 316 (384)
T PF09455_consen 271 KLLLDKIIEKYKPFKKDESSLEDQLKLIEWYLERGLYQQALTLLRE 316 (384)
T ss_dssp HHHHHHHHHHHGGG-S-E-EHHHHHHHHHHHS-H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 3344444444444333333377778999999999999999999999
No 210
>cd07909 YciF YciF bacterial stress response protein, ferritin-like iron-binding domain. YciF is a bacterial protein of unknown function that is up-regulated when bacteria experience stress conditions, and is highly conserved in a broad range of bacterial species. YciF has a ferritin-like domain. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=33.27 E-value=1.2e+02 Score=25.38 Aligned_cols=60 Identities=15% Similarity=0.223 Sum_probs=47.3
Q ss_pred CHHHHHHHHHHHHhhhccCCchhHHHHHHhhcccccccccc--HHHHHHHHHHHhccccccc
Q 025427 153 NNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQ--WADAATDFFEAFKNYDEAG 212 (253)
Q Consensus 153 n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekd--y~tA~s~F~EAFe~yde~g 212 (253)
...++++++...=.-..+++||-+.|.|.|..+.++....+ .+-+.---...|++|--++
T Consensus 48 qi~rLe~if~~lg~~~~~~~c~~m~gli~e~~~~~~~~~~~~v~Da~li~aaq~vEHyEIA~ 109 (147)
T cd07909 48 QVERLEQIFESLGEKPEGKKCKAMEGLIKEAEELIEETGDSAVLDAALIAAAQKVEHYEIAG 109 (147)
T ss_pred HHHHHHHHHHHcCCCCccCcchHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888666778899999999999999999987555 5666666778888886543
No 211
>PF01997 Translin: Translin family; InterPro: IPR002848 Translins are DNA-binding proteins that specifically recognise consensus sequences at the breakpoint junctions in chromosomal translocations, mostly involving immunoglobulin (Ig)/T-cell receptor gene segments. They seem to recognise single-stranded DNA ends generated by staggered breaks occuring at recombination hot spots []. Translin folds into an alpha-alpha superhelix, consisting of two curved layers of alpha/alpha topology [, ].; GO: 0043565 sequence-specific DNA binding; PDB: 3QB5_K 3PJA_L 1J1J_D 3RIU_C 3AXJ_B 4DG7_C 2QVA_C 2QRX_A 1KEY_C.
Probab=33.13 E-value=24 Score=30.62 Aligned_cols=54 Identities=13% Similarity=0.394 Sum_probs=38.8
Q ss_pred CCc-hhHHHHHHhhccccc-----cccccHHHHHHHH------HHHhccccc-----ccC--hhhHHHHHHHH
Q 025427 171 IPH-PRIMGIIRECGGKMH-----MAERQWADAATDF------FEAFKNYDE-----AGN--QRRIQCLKYGF 224 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~-----~~ekdy~tA~s~F------~EAFe~yde-----~g~--~~a~~~LKYlv 224 (253)
|+. +.++|.+|.+|=.|= .-.||+++|.... |.+|..++- -++ .+|..++||.|
T Consensus 113 v~~~dYL~Gl~DltGEL~R~ai~~v~~gd~~~~~~i~~f~~~l~~~~~~l~~~~~~~~n~~LrkK~d~~k~~l 185 (200)
T PF01997_consen 113 VTPEDYLLGLADLTGELMRYAINSVTKGDYERPEKILEFMRELYSGFQLLNLPDAIVKNDELRKKFDVLKYSL 185 (200)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHTT-SSHHHHHHHHHHHHHHHHHTSGGTTGS--SHHHHHHHHCHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHhCcchhhcccchhHHHHHHHHHHHH
Confidence 555 889999999995543 4678888887665 889998886 222 48889999975
No 212
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=33.06 E-value=1.4e+02 Score=29.76 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=48.2
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
-....++..|+..|+|++|....++..+.-.. ++ .. --.|---.-.|..+++..++.+.|.+|..+.|.
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd----~a---eA--~~A~yNLAcaya~LGr~dEAla~LrrALelsn~ 144 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELNPN----PD---EA--QAAYYNKACCHAYREEGKKAADCLRTALRDYNL 144 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----ch---HH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch
Confidence 34457899999999999999998887776221 11 00 011333445667789999999999999987444
No 213
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=32.82 E-value=3.8e+02 Score=27.10 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=72.1
Q ss_pred HHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhH
Q 025427 100 KIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLL--EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRI 176 (253)
Q Consensus 100 ~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~Ll--Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i 176 (253)
-++=.+++++++.++...+.++... +++++ ||+.--|-=.+-++|++.|...+-..++..-.-+| |..
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~---------~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKES---------SPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhc---------chHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455678999999999999888533 43443 67666666667789999999988888875444444 888
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhccccccc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 212 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g 212 (253)
+|.+ +-.+|+|.+|-..|.-.|++-+...
T Consensus 85 ~~L~-------~Y~~k~~~kal~~ls~w~~~~~~~~ 113 (549)
T PF07079_consen 85 KALV-------AYKQKEYRKALQALSVWKEQIKGTE 113 (549)
T ss_pred HHHH-------HHHhhhHHHHHHHHHHHHhhhcccc
Confidence 8864 4489999999999998888755443
No 214
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=32.82 E-value=5.9e+02 Score=26.54 Aligned_cols=168 Identities=16% Similarity=0.219 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH-----------------hhhhhhhhhhHHHHHHHHHHhcCCCCc-----chh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTY-----------------IKSAVTRNYSEKCINNIMDFVSGSASQ-----NFS 69 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~-----------------~~~~v~ka~~~K~i~~ild~~s~~~~~-----~~~ 69 (253)
-+-|+++.||..++|+++...++.++.- ++..|.=.+.++- ++|.-..+|.+ |-=
T Consensus 355 vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~---Li~~~~~sPesWca~GNcf 431 (638)
T KOG1126|consen 355 VLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD---LIDTDPNSPESWCALGNCF 431 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH---HHhhCCCCcHHHHHhcchh
Confidence 3789999999999999987777665532 2223333333332 24433333421 111
Q ss_pred HHHHHHHHHHHHHHHhh--------------------h--hh--hHHHHhh-----------hHHHHHhhhcchhHHHHH
Q 025427 70 LLREFYQTTLKALEEAK--------------------N--ER--LWFKTNL-----------KLCKIWFDMGEYGRMSKI 114 (253)
Q Consensus 70 ~l~~~y~~~~e~i~~a~--------------------~--er--l~lk~~l-----------kLa~l~l~~~~y~~a~~l 114 (253)
-+++.++..+++++.|- + |. ..||-.| -++.+|+.+++|+.|.--
T Consensus 432 SLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~ 511 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFH 511 (638)
T ss_pred hhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHH
Confidence 14555666666665322 1 11 3344333 466777788888888754
Q ss_pred HHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh-HHHHHHhhcccccccccc
Q 025427 115 LKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR-IMGIIRECGGKMHMAERQ 193 (253)
Q Consensus 115 i~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~-i~g~I~e~~Gkl~~~ekd 193 (253)
++....- - - .+..+=++. .++++++|...|+-+.|..|.++.-.=++|+ -.|.|.- .-++
T Consensus 512 fqkA~~I---N----P---~nsvi~~~~--g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~-------~~~~ 572 (638)
T KOG1126|consen 512 FQKAVEI---N----P---SNSVILCHI--GRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF-------SLGR 572 (638)
T ss_pred HHhhhcC---C----c---cchhHHhhh--hHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH-------hhcc
Confidence 4433322 1 1 333444444 5677889999999999999998887777766 3444444 4456
Q ss_pred HHHHHHHH
Q 025427 194 WADAATDF 201 (253)
Q Consensus 194 y~tA~s~F 201 (253)
|.+|...+
T Consensus 573 ~~eal~~L 580 (638)
T KOG1126|consen 573 YVEALQEL 580 (638)
T ss_pred hHHHHHHH
Confidence 77777664
No 215
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=32.72 E-value=7.1e+02 Score=27.45 Aligned_cols=148 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHH-------HHHHhhh----------hhhhhh-----------------hHHHHHHHHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYRE-------MLTYIKS----------AVTRNY-----------------SEKCINNIMD 58 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~-------ll~~~~~----------~v~ka~-----------------~~K~i~~ild 58 (253)
|.|++.++-++|.|..+..-|++ ++.++|| +++|++ -...++.|+-
T Consensus 1148 Leqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~t 1227 (1416)
T KOG3617|consen 1148 LEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIET 1227 (1416)
T ss_pred HHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHh
Q ss_pred HhcCCCCcchhHHHHHHHHHH---------------------HHHHHhh-----hhh-hHHHHhhhHHHHHhhhcc--hh
Q 025427 59 FVSGSASQNFSLLREFYQTTL---------------------KALEEAK-----NER-LWFKTNLKLCKIWFDMGE--YG 109 (253)
Q Consensus 59 ~~s~~~~~~~~~l~~~y~~~~---------------------e~i~~a~-----~er-l~lk~~lkLa~l~l~~~~--y~ 109 (253)
++.+++. .+.|-.||..|- .|+..++ ..+ -=|+..+.+.+..++..+ -+
T Consensus 1228 FYTKgqa--fd~LanFY~~cAqiEiee~q~ydKa~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~e 1305 (1416)
T KOG3617|consen 1228 FYTKGQA--FDHLANFYKSCAQIEIEELQTYDKAMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKE 1305 (1416)
T ss_pred hhhcchh--HHHHHHHHHHHHHhhHHHHhhhhHHhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhh
Q ss_pred HHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 110 RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 110 ~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
++...|++....+.+++- || -.---.|+++-|+-|...+|++.+-++++..+.
T Consensus 1306 D~~~~i~qc~~lleep~l-d~---~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~ 1358 (1416)
T KOG3617|consen 1306 DAADGIRQCTTLLEEPIL-DD---IIRCTRLFALLIEDHVSRKNYKPAYRALTELQK 1358 (1416)
T ss_pred hHHHHHHHHHHHhhCcCC-CC---cchhHHHHHHHHHHHHhhhhccHHHHHHHHHhh
No 216
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=32.66 E-value=2.1e+02 Score=26.69 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=31.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV 60 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~ 60 (253)
=+|++.++++|.|++++++...+..+. ...+. ..+|++|.+.+
T Consensus 110 P~Lm~~ci~~g~y~eALel~~~~~~L~-~~~~~---~~lv~~i~~ev 152 (338)
T PF04124_consen 110 PQLMDTCIRNGNYSEALELSAHVRRLQ-SRFPN---IPLVKSIAQEV 152 (338)
T ss_pred HHHHHHHHhcccHhhHHHHHHHHHHHH-HhccC---chhHHHHHHHH
Confidence 477888999999999999998888776 55554 34455555444
No 217
>PF09184 PPP4R2: PPP4R2; InterPro: IPR015267 PPP4R2 (protein phosphatase 4 core regulatory subunit R2) is the regulatory subunit of the histone H2A phosphatase complex. It has been shown to confer resistance to the anticancer drug cisplatin in yeast [], and may confer resistance in higher eukaryotes.
Probab=32.30 E-value=3.1e+02 Score=25.43 Aligned_cols=28 Identities=29% Similarity=0.590 Sum_probs=23.3
Q ss_pred hHHHHHhh-hcchhHHHHHHHHHHHHccc
Q 025427 97 KLCKIWFD-MGEYGRMSKILKELHKSCQR 124 (253)
Q Consensus 97 kLa~l~l~-~~~y~~a~~li~~L~~~l~~ 124 (253)
|||.|+++ .+.|....+.+..|.+.|-=
T Consensus 102 RlcEl~~~P~~~y~~~~k~~~alek~~~V 130 (288)
T PF09184_consen 102 RLCELLLDPRKHYKTLDKFLRALEKVVLV 130 (288)
T ss_pred HHHHHHhChhhccccHHHHHHHHheeEEE
Confidence 99999999 55688889999999887643
No 218
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.06 E-value=91 Score=33.51 Aligned_cols=147 Identities=13% Similarity=0.188 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh---h
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN---E 88 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~---e 88 (253)
=++-|+.+|...|++++++++++.+.... + .+.....+.+..+++++......+. ++..++-+|-=+ +
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~-~-~~d~~~~~~~e~ii~YL~~l~~~~~-------~Li~~y~~wvl~~~p~ 576 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDED-S-DTDSFQLDGLEKIIEYLKKLGAENL-------DLILEYADWVLNKNPE 576 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccc-c-ccccchhhhHHHHHHHHHHhcccch-------hHHHHHhhhhhccCch
Confidence 36789999999999999999999998866 3 2223345555567888765333222 566777676221 1
Q ss_pred ---hhHHH---Hh---h--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh----cC
Q 025427 89 ---RLWFK---TN---L--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KN 153 (253)
Q Consensus 89 ---rl~lk---~~---l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~----~n 153 (253)
++|.. +. + ..+-=|++.....-+..-|+.+-..=+. ++..-.+.++..|+-.+.-+... ..
T Consensus 577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~----~~~~lht~ll~ly~e~v~~~~~~~~kg~e 652 (877)
T KOG2063|consen 577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRL----TSTLLHTVLLKLYLEKVLEQASTDGKGEE 652 (877)
T ss_pred hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccc----cchHHHHHHHHHHHHHHhhccCchhcccc
Confidence 35554 12 2 3333346666666666666666555332 23333444555555555421111 12
Q ss_pred HHHH--HHHHHHHHhhhccC
Q 025427 154 NKKL--KQLYQKALAIKSAI 171 (253)
Q Consensus 154 ~~kl--k~~y~~a~~~~~aI 171 (253)
.++. |+-+.+.+.+.+.+
T Consensus 653 ~~E~~~rekl~~~l~~s~~Y 672 (877)
T KOG2063|consen 653 APETTVREKLLDFLESSDLY 672 (877)
T ss_pred chhhhHHHHHHHHhhhhccc
Confidence 3333 66666666666654
No 219
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=31.90 E-value=2.7e+02 Score=27.99 Aligned_cols=79 Identities=23% Similarity=0.234 Sum_probs=59.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
-.|--+++.|++++|.+.+++|.+.-+ | +.++.| +-++++.+.|..+++-..+.+++.....-+- +.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P------~---N~~~~~---~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP------D---NPYYLE---LAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC------C---CHHHHH---HHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 567788999999999999999888843 2 444443 3356677889999999999999887666555 66
Q ss_pred HHHHHHhhcccc
Q 025427 176 IMGIIRECGGKM 187 (253)
Q Consensus 176 i~g~I~e~~Gkl 187 (253)
..|+.-..+|+-
T Consensus 379 ~~a~all~~g~~ 390 (484)
T COG4783 379 NLAQALLKGGKP 390 (484)
T ss_pred HHHHHHHhcCCh
Confidence 777766666653
No 220
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=31.72 E-value=1.6e+02 Score=20.65 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
---|++.-+.+.|++|++.+++.++..-+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~~~ 53 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSKDL 53 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 34467777888899999998888888777
No 221
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=31.47 E-value=5.1e+02 Score=25.41 Aligned_cols=107 Identities=14% Similarity=0.230 Sum_probs=68.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY-TETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y-~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
-+|.=+.+-|.+++|.++|.+-++.- -|+. |.-.+= -..+|..++-.+..+..+-- .-.|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~------~D~~----------L~~~~~~l~~~d~~~l~k~~e~~l~~h--~~~p- 328 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQ------WDPR----------LCRLIPRLRPGDPEPLIKAAEKWLKQH--PEDP- 328 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhc------cChh----------HHHHHhhcCCCCchHHHHHHHHHHHhC--CCCh-
Confidence 56777889999999999998877763 2311 111111 12356666666666654321 1125
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhc-------------ccccccChhhHHHHHHHHH
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFK-------------NYDEAGNQRRIQCLKYGFY 225 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe-------------~yde~g~~~a~~~LKYlvL 225 (253)
-+-..=|.+++.++.|.+|.++|=-|.+ .|+..|+|..-+...=-.|
T Consensus 329 ---~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 329 ---LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred ---hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555568889999999999999987764 5666777755444444444
No 222
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=30.95 E-value=5.6e+02 Score=25.76 Aligned_cols=123 Identities=19% Similarity=0.213 Sum_probs=82.1
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCC---c--hhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGT---D--DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~---d--D~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
.+-.||-+..+..-...++.+....++..+.. + .....+.++=++.+-+|.|-.++++.++-....+ +|
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~------aI 221 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDK------AI 221 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHH------HH
Confidence 34456666666666667777777666443221 1 1223566788889999999999998866555554 45
Q ss_pred Cc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHH
Q 025427 172 PH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLH 227 (253)
Q Consensus 172 ~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~ 227 (253)
-| |.+ -..=..=|+++-+.||++.|... .|.-+.-|-++----.+|-|||+=|.
T Consensus 222 ~htPt~-~ely~~KarilKh~G~~~~Aa~~-~~~Ar~LD~~DRyiNsK~aKy~LRa~ 276 (517)
T PF12569_consen 222 EHTPTL-VELYMTKARILKHAGDLKEAAEA-MDEARELDLADRYINSKCAKYLLRAG 276 (517)
T ss_pred hcCCCc-HHHHHHHHHHHHHCCCHHHHHHH-HHHHHhCChhhHHHHHHHHHHHHHCC
Confidence 56 664 24556667778889999999875 45556677666566778999998543
No 223
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.65 E-value=4.6e+02 Score=24.58 Aligned_cols=141 Identities=18% Similarity=0.271 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh-------hhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-------AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~-------~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
||..|.+-+..+...+.++.++|+.-...--. .++=.+++|. ++.+ +++---++|+-+++.++
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~----lenv------~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA----LENV------KPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH----hhcC------CHHHHHHHHHHHHHHHh
Confidence 55666666666666666666666654433211 1111122222 2222 23333377887877777
Q ss_pred HhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 84 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 84 ~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
.....+-=+..-=+.+++|...++|.+|..-+........+.+...++ --.+.-.|-+|--..|+..++..|+.
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~------~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ------CKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH------HHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 544333222222388889999999999976665554443332111121 11233344455555677666666665
Q ss_pred HHhh
Q 025427 164 ALAI 167 (253)
Q Consensus 164 a~~~ 167 (253)
...+
T Consensus 216 ~~qi 219 (308)
T KOG1585|consen 216 CSQI 219 (308)
T ss_pred hhcC
Confidence 4433
No 224
>cd00126 PAH Pancreatic Hormone domain, a regulator of pancreatic and gastrointestinal functions; neuropeptide Y (NPY)b, peptide YY (PYY), and pancreatic polypetide (PP) are closely related; propeptide is enzymatically cleaved to yield the mature active peptide with amidated C-terminal ends; receptor binding and activation functions may reside in the N- and C-termini respectively; occurs in neurons, intestinal endocrine cells, and pancreas; exist as monomers and dimers
Probab=30.53 E-value=60 Score=21.01 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
..|++.++|..+..|+ .-|+|.
T Consensus 13 ~~eel~~Y~~~L~~Yi-nlitR~ 34 (36)
T cd00126 13 SPEELRQYLAALREYI-NLITRP 34 (36)
T ss_pred CHHHHHHHHHHHHHHH-HHHccC
Confidence 4688999999999999 888874
No 225
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=30.26 E-value=4.3e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.344 Sum_probs=40.2
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHH
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNK 155 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~ 155 (253)
..+.++.++++.|+|.+|-..++....- ...--|...|-|++--.++|-.
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~------------~~~~A~sL~L~iriak~~gd~~ 224 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQR------------GGAQAESLLLGIRIAKRLGDRA 224 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhc------------ccccHHHHHHHHHHHHHhccHH
Confidence 3458999999999999999888887766 3344577888999998998855
No 226
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=30.16 E-value=6.3e+02 Score=26.02 Aligned_cols=119 Identities=14% Similarity=0.182 Sum_probs=77.8
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHhhhcc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET---KNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~---~n~~klk~~y~~a~~~~~a 170 (253)
...-|+-||.-.|+|++|....+..++. ++ .| +.|=-++=..+ +....+-.+|++|+.+.-.
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v--~P---nd----------~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~ 496 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQV--KP---ND----------YLLWNRLGATLANGNRSEEAISAYNRALQLQPG 496 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhc--CC---ch----------HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC
Confidence 3447899999999999999999988877 22 24 12212221112 2477889999999988765
Q ss_pred -CCchhHHHHHHhhccccccccccHHHHHHHHHHHhc----ccccccC----hhhHHHHHHHHHHHHhccCCCchH
Q 025427 171 -IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK----NYDEAGN----QRRIQCLKYGFYLHLLFLISIYFL 237 (253)
Q Consensus 171 -I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe----~yde~g~----~~a~~~LKYlvL~~iL~~s~id~~ 237 (253)
|-.=.-+ |+=+|--|.|++|-.+|.+|.. +++..+. ..-.+.|| ++=++++++...+
T Consensus 497 yVR~RyNl-------gIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR---~als~~~~~D~l~ 562 (579)
T KOG1125|consen 497 YVRVRYNL-------GISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLR---LALSAMNRSDLLQ 562 (579)
T ss_pred eeeeehhh-------hhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHH---HHHHHcCCchHHH
Confidence 2222233 3446788999999999999984 3332322 24566777 5556666665443
No 227
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=29.56 E-value=2.2e+02 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=20.9
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSC 122 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l 122 (253)
-|-.||.+..+|.+.+++|+++..-.
T Consensus 108 eL~~L~~~s~~~~~mi~iL~~Ie~l~ 133 (142)
T PF04048_consen 108 ELKELWQRSQEYKEMIEILDQIEELR 133 (142)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888889999998888887553
No 228
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.27 E-value=4.5e+02 Score=26.83 Aligned_cols=106 Identities=17% Similarity=0.196 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCc---chhHHHHHHHHHHHHHH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQ---NFSLLREFYQTTLKALE 83 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~---~~~~l~~~y~~~~e~i~ 83 (253)
+-..+.+.+.+.-.-..|+++++..+|.-.-.|= ++-.++|+.|..+-..++. ....-+....+..+..+
T Consensus 411 ~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d-------~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~ 483 (613)
T PF04097_consen 411 DFLREIIEQAAREAEERGRFEDAILLYHLAEEYD-------KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILE 483 (613)
T ss_dssp HHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HH-------HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHH
Confidence 3455677888888888899999888886544442 2444555555433222211 00111222334433333
Q ss_pred Hhh-----------hhhhHHHHhh--hHHHHHhhhcchhHHHHHHHHHH
Q 025427 84 EAK-----------NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELH 119 (253)
Q Consensus 84 ~a~-----------~erl~lk~~l--kLa~l~l~~~~y~~a~~li~~L~ 119 (253)
.-+ ..+--|.+-+ .-+.-++..|+|++|++.|++|.
T Consensus 484 ~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 484 RYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred HHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 211 1122233333 55666789999999998888765
No 229
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=29.24 E-value=1e+02 Score=28.58 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSE 50 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~ 50 (253)
+|..+++.++++.+...|+++++.+.++++.+-= |...+++..
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~ 192 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLR 192 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHH
No 230
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=29.23 E-value=9.5e+02 Score=27.84 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=38.6
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
+++..++.+.+=.+|.+++++-++.+++ ..=+|+++-=+|+-++.++.++-|.++.-.++
T Consensus 1569 ~y~~fLl~~ne~~aa~~lL~rAL~~lPk----------~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1569 MYADFLLRQNEAEAARELLKRALKSLPK----------QEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhhcch----------hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 5667777777777777777777777654 22355555566666666666666666665543
No 231
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=28.98 E-value=5.7e+02 Score=25.19 Aligned_cols=76 Identities=16% Similarity=0.156 Sum_probs=52.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc------
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA------ 170 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a------ 170 (253)
..+.-++..|+++.|++.|..|++-+.= | .+++-+-.+-|-+.+...++-.=+..+.+.++.
T Consensus 160 ~ql~s~~~~GD~~~ai~~i~~llEi~~W-----d-------a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~y 227 (504)
T KOG0624|consen 160 QQLKSASGSGDCQNAIEMITHLLEIQPW-----D-------ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHY 227 (504)
T ss_pred HHHHHHhcCCchhhHHHHHHHHHhcCcc-----h-------hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHH
Confidence 4456678899999999999999987532 2 356667777777777777766666655554443
Q ss_pred --------CCc-hhHHHHHHhhc
Q 025427 171 --------IPH-PRIMGIIRECG 184 (253)
Q Consensus 171 --------I~~-P~i~g~I~e~~ 184 (253)
|-| ---.++||||=
T Consensus 228 kis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 228 KISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Confidence 333 44567888873
No 232
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=28.90 E-value=66 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
..+++.+++..+..|+ .-|+|-
T Consensus 13 ~~e~l~~Y~~~L~~Yi-nlitR~ 34 (36)
T smart00309 13 SPEDLRQYLAALREYI-NLITRP 34 (36)
T ss_pred CHHHHHHHHHHHHHHH-HHhccC
Confidence 4678999999999999 888874
No 233
>PF00159 Hormone_3: Pancreatic hormone peptide; InterPro: IPR001955 Pancreatic hormone (PP) [] is a peptide synthesized in pancreatic islets of Langherhans, which acts as a regulator of pancreatic and gastrointestinal functions. The hormone is produced as a larger propeptide, which is enzymatically cleaved to yield the mature active peptide: this is 36 amino acids in length [] and has an amidated C terminus []. The hormone has a globular structure, residues 2-8 forming a left-handed poly-proline-II-like helix, residues 9-13 a beta turn, and 14-32 an alpha-helix,held close to the first helix by hydrophobic interactions []. Unlike glucagon, another peptide hormone, the structure of pancreatic peptide is preserved in aqueous solution []. Both N and C termini are required for activity: receptor binding and activation functions may reside in the N and C termini respectively []. Pancreatic hormone is part of a wider family of active peptides that includes: Neuropeptide Y (NPY) [], one of the most abundant peptides in the mammalian nervous system. NPY is implicated in the control of feeding and the secretion of the gonadotrophin-releasing hormone. Peptide YY (PYY) []. PPY is a gut peptide that inhibits exocrine pancreatic secretion, has a vasoconstrictory action and inhibits jejunal and colonic mobility. Various NPY and PYY-like polypeptides from fish and amphibians [, ]. Neuropeptide F (NPF) from invertebrates such as worms and snail. Skin peptide Tyr-Tyr (SPYY) from the frog Phyllomedusa bicolor. SPYY shows a large spectra of antibacterial and antifungal activity. All these peptides are 36 to 39 amino acids long. Like most active peptides, their C-terminal is amidated and they are synthesized as larger protein precursors.; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 1LJV_A 1BBA_A 1V1D_A 1PPT_A 2H3T_A 2H4B_A 2BF9_A 2H3S_B 1K8V_A 2DF0_A ....
Probab=28.85 E-value=72 Score=20.61 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
..|++.+++.++..|+ .-|+|.
T Consensus 13 speel~~Y~~~L~~Y~-~lvtRp 34 (36)
T PF00159_consen 13 SPEELAQYYAALRHYI-NLVTRP 34 (36)
T ss_dssp SHHHHHHHHHHHHHHH-HHHTTT
T ss_pred CHHHHHHHHHHHHHHH-HHHccC
Confidence 4688999999999999 888874
No 234
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=28.73 E-value=7.3e+02 Score=26.35 Aligned_cols=98 Identities=14% Similarity=0.312 Sum_probs=57.2
Q ss_pred HHHhhhcchhHHHHHHHHHHHHccc-----CCCCc-hhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 100 KIWFDMGEYGRMSKILKELHKSCQR-----EDGTD-DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 100 ~l~l~~~~y~~a~~li~~L~~~l~~-----~~~~d-D~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..-+..+++..|.++++.-...=++ .+|+. -+.+=.--+-|.+.=+.+--..+-+.+-|++|....... |..
T Consensus 433 emElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr--iaT 510 (835)
T KOG2047|consen 433 EMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR--IAT 510 (835)
T ss_pred HHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh--cCC
Confidence 3445678899999998876544222 22211 122222334555555555556667777888887765544 334
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
|.|. +--..+-.-+.||-|||+-|.-
T Consensus 511 Pqii-----------~NyAmfLEeh~yfeesFk~YEr 536 (835)
T KOG2047|consen 511 PQII-----------INYAMFLEEHKYFEESFKAYER 536 (835)
T ss_pred HHHH-----------HHHHHHHHhhHHHHHHHHHHHc
Confidence 5432 2223344556789999999853
No 235
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=28.66 E-value=9.7e+02 Score=27.77 Aligned_cols=62 Identities=16% Similarity=0.395 Sum_probs=49.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
|-|.|.+..|+=+++..+...++..-++- . ++...=+.+-.+.++.+.+|.+|..+....-+
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ayPKR--------t----DlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAYPKR--------T----DLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhCccc--------h----hHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 78999999999999999999999884332 2 35566677777889999999999998776554
No 236
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=28.61 E-value=5.6e+02 Score=24.96 Aligned_cols=157 Identities=17% Similarity=0.303 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcc-----hhHHH----------HHHHHHHHHHHHhhhhhhH
Q 025427 27 KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQN-----FSLLR----------EFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 27 ~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~-----~~~l~----------~~y~~~~e~i~~a~~erl~ 91 (253)
++++..+-+=+.|- |++++.+|.||+.+.+=...+ ..++. .-|+.++..++ .||..
T Consensus 141 ~~~L~~L~~elnfs------N~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q~~~g~~~F~g~~~~a~~~l~---~E~~~ 211 (379)
T PF04518_consen 141 EDFLNPLGSELNFS------NLAANYGNPLLEIINSFNNASVYYNLSSYLGQSKMGTDNFPGSYFMALAKLE---KEREQ 211 (379)
T ss_pred HHHHHHHHHHhhcc------hHHHHHHHHHHHHHHcCcCcceeeehHHHHhhhccchhccCCcHHHHHHHHH---HHHHH
Confidence 44555444444454 789999999999887421110 01111 11223322222 33333
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
+-.|...-.+|+..++++.+.++..++-++.-|+.++=.+-.++..+-.-.+++.-+...+. .+++ .++
T Consensus 212 ---------~~~di~~~~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~-~L~~-~~~ 280 (379)
T PF04518_consen 212 ---------IRRDIKSCERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLA-PLSI-QGV 280 (379)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccee-ecC
Confidence 33444557899999999999999876655544444443333334333333333333332222 2233 233
Q ss_pred Cch-hHHHHHHhhccccccccccHHHHHHHHHHHhccccccc
Q 025427 172 PHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 212 (253)
Q Consensus 172 ~~P-~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g 212 (253)
+.| ..-|.-+-.|| ..||-. +.++||+|--.|
T Consensus 281 ~~~~~~~~~F~i~g~-----~~~Wi~----~L~~lE~~vv~G 313 (379)
T PF04518_consen 281 SDPDEVDGAFKITGG-----SDDWIP----TLQILESFVVSG 313 (379)
T ss_pred CCCCCcCCceEEEec-----chhHHH----HHHHHHHHHHcC
Confidence 332 23444444454 566643 566777776555
No 237
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.97 E-value=5.4e+02 Score=24.22 Aligned_cols=121 Identities=17% Similarity=0.144 Sum_probs=74.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-h
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-P 174 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P 174 (253)
+.=|.++++.++|++|...+.. .--+|+.|+-.+++.++....=++..+.+...+.+--+- .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~-----------------~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHL-----------------GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhc-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 4667889999999999855432 223788888888887776544444444443333322111 1
Q ss_pred hHHHHHH----------------hhcc-------------ccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHH
Q 025427 175 RIMGIIR----------------ECGG-------------KMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFY 225 (253)
Q Consensus 175 ~i~g~I~----------------e~~G-------------kl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL 225 (253)
.-++-|. |.+| ..|+.-++|+.|-+-.-||...+ .++|. .|--++.
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpe---tL~Nliv 249 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPE---TLANLIV 249 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHH---HHHHHHH
Confidence 2222222 2222 24678889999999988888865 35554 4556777
Q ss_pred HHHhccCCCchHH
Q 025427 226 LHLLFLISIYFLY 238 (253)
Q Consensus 226 ~~iL~~s~id~~~ 238 (253)
|..+.|-+.++..
T Consensus 250 ~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 250 LALHLGKDAEVTE 262 (299)
T ss_pred HHHHhCCChHHHH
Confidence 7777777655443
No 238
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=26.70 E-value=71 Score=25.12 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=23.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
-|+-+|..+|.+.+|++++.++...
T Consensus 44 eL~~lY~~kg~h~~AL~ll~~l~~~ 68 (108)
T PF10366_consen 44 ELVDLYQGKGLHRKALELLKKLADE 68 (108)
T ss_pred HHHHHHHccCccHHHHHHHHHHhcc
Confidence 6889999999999999999999995
No 239
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=26.47 E-value=44 Score=21.80 Aligned_cols=10 Identities=60% Similarity=1.128 Sum_probs=8.0
Q ss_pred HHHHHHhcCC
Q 025427 244 RIICLFVFGF 253 (253)
Q Consensus 244 ~~~~~~~~~~ 253 (253)
-.+.||+|||
T Consensus 14 ffvsLFiFGf 23 (38)
T PRK02655 14 FFVGLFVFGF 23 (38)
T ss_pred HHHHHHHccc
Confidence 4578999997
No 240
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.55 E-value=1.1e+02 Score=28.42 Aligned_cols=93 Identities=16% Similarity=0.013 Sum_probs=61.2
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhh-HHHHHHHH
Q 025427 146 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR-IQCLKYGF 224 (253)
Q Consensus 146 ~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a-~~~LKYlv 224 (253)
-.|..-+.+.|+|..+.+|...--.=-.|---|--.|+.|.|.-+-..|.+|-.+|=-|-+.|.|.|+|.. -.+|--
T Consensus 39 vafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleK-- 116 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEK-- 116 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHH--
Confidence 34555677889998888887422221223344556677788888889999999999999999999999743 222221
Q ss_pred HHHHhcc-CCCchHHHH
Q 025427 225 YLHLLFL-ISIYFLYLY 240 (253)
Q Consensus 225 L~~iL~~-s~id~~~~~ 240 (253)
=++++-+ .|.+-..+|
T Consensus 117 Aak~lenv~Pd~AlqlY 133 (308)
T KOG1585|consen 117 AAKALENVKPDDALQLY 133 (308)
T ss_pred HHHHhhcCCHHHHHHHH
Confidence 2455544 345555555
No 241
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=25.14 E-value=2.6e+02 Score=21.02 Aligned_cols=50 Identities=16% Similarity=0.243 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhc
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 61 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s 61 (253)
.|..+++..+...|+++++++.+-+++.-- +.-....+-|.+=.+++.+.
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d-r~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRD-RDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC--TTCCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccccccHHHHHHHHHHHHcC
Confidence 678899999999999999988776655443 44444556666666666665
No 242
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=24.99 E-value=4e+02 Score=22.08 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcc-------hhHHHHHHHHHHHHcccCCCCchhhhcchHHH
Q 025427 67 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE-------YGRMSKILKELHKSCQREDGTDDQKKGSQLLE 139 (253)
Q Consensus 67 ~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~-------y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlE 139 (253)
+.+.+...|+=|++.+.-| ...++.++ .++|..+|.+|...+..+.|++= ...|.-
T Consensus 20 P~~Li~MLyeg~l~~l~~A--------------~~aie~~~i~~k~~~i~ka~~Ii~eL~~~Ld~E~Ggei---a~nL~~ 82 (132)
T COG1516 20 PHKLILMLYEGALKFLKRA--------------KEAIEQEDIEEKNESIDKAIDIITELRASLDYEKGGEI---AQNLDA 82 (132)
T ss_pred HHHHHHHHHHHHHHHHHHH--------------HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCHhhcchH---HHHHHH
Confidence 4566778888888766544 34444444 35678999999999999877666 777888
Q ss_pred HHHHHHHHHHh
Q 025427 140 VYAIEIQMYTE 150 (253)
Q Consensus 140 v~~lE~~~y~~ 150 (253)
+|...++-...
T Consensus 83 LY~y~~~rL~~ 93 (132)
T COG1516 83 LYDYMVRRLVQ 93 (132)
T ss_pred HHHHHHHHHHH
Confidence 88777765543
No 243
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=24.77 E-value=2.3e+02 Score=21.96 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
+.+|....+.|+..++.++|++.+..+...+ +.
T Consensus 14 ~~~Le~As~~y~~~~n~~~m~~~L~pLh~~l-~k 46 (100)
T PF08771_consen 14 YEALEEASRLYFGENNVEKMFKILEPLHEML-EK 46 (100)
T ss_dssp HHHHHHHHHHHHTTT-HHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-cC
Confidence 4578888899999999999999998888887 44
No 244
>TIGR02878 spore_ypjB sporulation protein YpjB. Members of this protein, YpjB, family are restricted to a subset of endospore-forming bacteria, including Bacillus species but not CLostridium or some others. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon, where sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect. This protein family is not, however, a part of the endospore formation minimal gene set.
Probab=24.51 E-value=2.5e+02 Score=25.54 Aligned_cols=69 Identities=12% Similarity=0.172 Sum_probs=42.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHhhhhhh---hh-hhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh---hhhhH
Q 025427 19 LYYRLGKYKEMMDAYREMLTYIKSAVT---RN-YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---NERLW 91 (253)
Q Consensus 19 l~~~~~~~~~~~~~~~~ll~~~~~~v~---ka-~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~---~erl~ 91 (253)
-++++|+|+++.+.+..+-..+ .... +. .+...+|. +...|+-+.+++..+. .+|++
T Consensus 14 Ql~K~~~yeeAkqvL~yFs~~F-~~~~~~~~~~~t~~elR~---------------iT~~~e~a~~al~~~~~~~~eki~ 77 (233)
T TIGR02878 14 QLTKQARYEEAKQVLEYFSKQF-VSAGKEKDPMLTMDQLRT---------------ITLTYERAVQALTATDMSDDEKIR 77 (233)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH-HhcccccCcccCHHHHHH---------------HHHHHHHHHHHHhhccCCHHHHHH
Confidence 5678999999999988888777 4332 11 23333333 3445566666666543 35677
Q ss_pred HHHhhhHHHHHh
Q 025427 92 FKTNLKLCKIWF 103 (253)
Q Consensus 92 lk~~lkLa~l~l 103 (253)
-=+.+||+--=+
T Consensus 78 ~~t~fRLavDA~ 89 (233)
T TIGR02878 78 AVTAFRLAVDAI 89 (233)
T ss_pred HHHHHHHHHHHh
Confidence 667777765433
No 245
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=24.27 E-value=5.1e+02 Score=23.01 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=28.6
Q ss_pred HhhcCHHHHHHHHHHHHhhhccC--CchhHHHHHHhhccccccccccHHHHH
Q 025427 149 TETKNNKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAA 198 (253)
Q Consensus 149 ~~~~n~~klk~~y~~a~~~~~aI--~~P~i~g~I~e~~Gkl~~~ekdy~tA~ 198 (253)
+..+|..|++++|..|+...+.= ..|.+.-.+ .-++...++++.||
T Consensus 151 Y~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sL----as~~~~~~~~e~AY 198 (203)
T PF11207_consen 151 YTKRDPEKTIQLLLRALELSNPDDNFNPEILKSL----ASIYQKLKNYEQAY 198 (203)
T ss_pred HHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHH----HHHHHHhcchhhhh
Confidence 33568888888888888766653 335533222 12366777777776
No 246
>PF02317 Octopine_DH: NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain; InterPro: IPR003421 This group of enzymes act on the CH-NH substrate bond using NAD(+) or NADP(+) as an acceptor. This domain is found primarily in octopine dehydrogenase (1.5.1.11 from EC), nopaline dehydrogenase (1.5.1.19 from EC), and lysopine dehydrogenase (1.5.1.16 from EC). NADPH is the preferred cofactor, but NADH is also used. Octopine dehydrogenase is involved in the reductive condensation of arginine and pyruvic acid to D-octopine []. Opine dehydrogenases can be found in both bacteria and marine cephalopods. In bacteria, some of these opine dehydrogenases are involved in crown gall tumours that are produced by Agrobacterium spp., and which encode for the opine dehydrogenases on a Ti-plasmid. These bacteria can transfer a portion of this plasmid (T-DNA) to a susceptible plant cell; the T-DNA then integrates into the plant nuclear genome, where its genes can be expressed. Some of these genes direct the synthesis and secretion of unusual amino acid and sugar derivatives called opines - these opines are used as a carbon and sometimes a nitrogen source by the infecting bacteria. Opine dehydrogenases are also found in the marine invertebrate cephalopods (octopuses, squid, and cuttlefish). For example in marine cephalopods, octopine dehydrogenase activity in mantle muscle is significantly correlated with a species' ability to buffer the acidic end products of anaerobic metabolism, with activity declining strongly with a species' habitat depth [].; GO: 0016491 oxidoreductase activity, 0050662 coenzyme binding, 0055114 oxidation-reduction process; PDB: 3IQD_B 3C7D_B 3C7A_A 3C7C_B 1BG6_A.
Probab=24.27 E-value=76 Score=26.23 Aligned_cols=48 Identities=21% Similarity=0.376 Sum_probs=37.8
Q ss_pred HHHHHHHhhhccCCc-hhHH---HHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 159 QLYQKALAIKSAIPH-PRIM---GIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 159 ~~y~~a~~~~~aI~~-P~i~---g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
..+..++...|.|-| |.+. |.|+..+|...+....+..+-....|++.
T Consensus 6 nvl~~~L~n~N~iiHp~~~l~n~~~ie~~~~~~~~y~~g~t~~v~~~~~~lD 57 (152)
T PF02317_consen 6 NVLEISLSNVNPIIHPPGTLLNAGRIENWGGEFPLYYEGITPSVARLLEALD 57 (152)
T ss_dssp -HHHHHHTTHHCCHCHHHHHTTHHHHCTTTSS-BCCHHH--HHHHHHHHHHH
T ss_pred chhhhhccCCCcccchHHHHhCcceeeecCCCcchHhcccCHHHHHHHHHHH
Confidence 356677888999999 7788 99998889999999999999888888875
No 247
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.17 E-value=1.8e+02 Score=27.75 Aligned_cols=58 Identities=24% Similarity=0.328 Sum_probs=41.1
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHh-hhccCC---c-hhHHHHHHhhccccccccccHHHHHHHHHHH
Q 025427 141 YAIEIQMYTETKNNKKLKQLYQKALA-IKSAIP---H-PRIMGIIRECGGKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 141 ~~lE~~~y~~~~n~~klk~~y~~a~~-~~~aI~---~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EA 204 (253)
.---++++++++|+++|-..|++.+| |.+||+ . ..|-+++|-.|.- .-..-...|||.
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS------~~m~LLQ~FYeT 130 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS------KNMDLLQEFYET 130 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh------hhhHHHHHHHHH
Confidence 33447899999999999999999998 777774 2 4577777766532 223345667664
No 248
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=23.60 E-value=7.5e+02 Score=24.71 Aligned_cols=133 Identities=11% Similarity=0.050 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
..+..+++-.|++.|+|++++..|++.+..- |.-.-+ ..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA----------------------------~~A----------- 114 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEA----------------------------QAA----------- 114 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHH----------------------------HHH-----------
Confidence 4577889999999999999999998887775 431000 000
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
...++..|...|++++|+..++...+.- + ...+. +..---.-.+++.+..+++...++.-.-
T Consensus 115 -----~yNLAcaya~LGr~dEAla~LrrALels-------n-----~~f~~-i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 115 -----YYNKACCHAYREEGKKAADCLRTALRDY-------N-----LKFST-ILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHhc-------c-----hhHHH-HHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 0245667777788888877666665530 1 11110 0000001123455666666666665554
Q ss_pred cCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 170 AIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 170 aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
-+-+ .+-..-++.- -.-=|+.....||=||=
T Consensus 177 ~~g~~~~~~~kL~~E------~~aPfR~~R~f~y~a~~ 208 (453)
T PLN03098 177 DIGSSFRRDLKLISE------VQAPFRGVRKFFYVAFT 208 (453)
T ss_pred ccCCchhhHHHHHHH------HhchHHHHHHHHHHHHH
Confidence 4443 2222222221 23468889999999885
No 249
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=23.51 E-value=2.5e+02 Score=29.41 Aligned_cols=121 Identities=15% Similarity=0.246 Sum_probs=81.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc---C
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA---I 171 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a---I 171 (253)
..=+|.-+.-.|+|+.|+..|+.--.. .+-++|.|.+-.+|+...|+++.+-+.+..|+.+.++ |
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH------------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~I 441 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH------------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAI 441 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc------------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHH
Confidence 335666666778888888777765544 6678999999999999999999999999998876555 4
Q ss_pred Cc---hh-HH-------------------HHH-----------HhhccccccccccHHHHHHHHHHHhccccccc-C--h
Q 025427 172 PH---PR-IM-------------------GII-----------RECGGKMHMAERQWADAATDFFEAFKNYDEAG-N--Q 214 (253)
Q Consensus 172 ~~---P~-i~-------------------g~I-----------~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g-~--~ 214 (253)
.+ -+ +. |.+ ..-+|.=+..-++|..|..-|-+-++.|++-. | .
T Consensus 442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD 521 (700)
T KOG1156|consen 442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD 521 (700)
T ss_pred HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Confidence 31 11 11 111 11235555666788889999988888888652 2 2
Q ss_pred hhHHHHHHHHHHH
Q 025427 215 RRIQCLKYGFYLH 227 (253)
Q Consensus 215 ~a~~~LKYlvL~~ 227 (253)
--..|++-|.|++
T Consensus 522 fhtyc~rk~tlrs 534 (700)
T KOG1156|consen 522 FHTYCMRKGTLRS 534 (700)
T ss_pred HHHHHHhcCcHHH
Confidence 3344555444444
No 250
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=23.34 E-value=1.4e+02 Score=21.55 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=20.3
Q ss_pred HHhCCHHHHHHHHHHHHHHhhhhhhhh
Q 025427 21 YRLGKYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
=..|++++++.+|.+-+.++ -...+.
T Consensus 17 D~~g~y~eA~~~Y~~aie~l-~~~~k~ 42 (75)
T cd02678 17 DNAGNYEEALRLYQHALEYF-MHALKY 42 (75)
T ss_pred HHcCCHHHHHHHHHHHHHHH-HHHHhh
Confidence 35689999999999999888 544443
No 251
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.25 E-value=8.7e+02 Score=26.50 Aligned_cols=32 Identities=3% Similarity=0.148 Sum_probs=27.0
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHccc
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 124 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~ 124 (253)
.+...-+++++..++|.+|+++|+.+...++.
T Consensus 336 ~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g 367 (951)
T KOG2115|consen 336 HQAQSTVQLLLSTQDFVGALDLIKTIQELLKG 367 (951)
T ss_pred HhhhHHHHHHHhcccHHHHHHHHHHHHHHHhh
Confidence 34447788999999999999999999988873
No 252
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=23.24 E-value=6.5e+02 Score=24.83 Aligned_cols=198 Identities=12% Similarity=0.100 Sum_probs=95.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCC-------CCcchhHHHHHHHHH
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGS-------ASQNFSLLREFYQTT 78 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~-------~~~~~~~l~~~y~~~ 78 (253)
..|.-+| +++--++..|.++.+++++.+=+...+ --| .- .-+++.+..+ ++.+. +.
T Consensus 116 ~~W~~nS--~laadhvAAGsFetAm~LLnrQiGivn-F~P---Lk---~~Fl~~y~~s~~~l~~~~~~p~--------l~ 178 (422)
T PF06957_consen 116 QIWVRNS--SLAADHVAAGSFETAMQLLNRQIGIVN-FEP---LK---PLFLEVYQASRTYLPALPSLPP--------LP 178 (422)
T ss_dssp HHHHHH----SHHHHHHCT-HHHHHHHHHHHC-B----GG---GH---HHHHHHHCCTEEEE-SSTTTS---------EE
T ss_pred HHHHHcC--CcHHHHHHhCCHHHHHHHHHHHhCccc-cHH---HH---HHHHHHHHhhceecccCCCCCC--------cc
Confidence 4577776 778889999999999999887555441 111 11 1223444321 11100 00
Q ss_pred HHHHH--Hh----h------hhh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCC--CchhhhcchHHHH---
Q 025427 79 LKALE--EA----K------NER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDG--TDDQKKGSQLLEV--- 140 (253)
Q Consensus 79 ~e~i~--~a----~------~er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~--~dD~~kk~~LlEv--- 140 (253)
-.+. |. + .-+ -.|...||.+.=++..|+|++|+...+.+...+.-.-. .++...-..++++
T Consensus 179 -~~~~r~~~~~~~~~~lP~i~~~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrE 257 (422)
T PF06957_consen 179 -SYIRRNWDESNPKNGLPAIPLSLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICRE 257 (422)
T ss_dssp -EEEBCTTTTSSSCCG-BB----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHH
T ss_pred -ccccCCccccccccCCCcCcCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHH
Confidence 0000 10 0 001 23556788899999999999999999999888543321 1232233444544
Q ss_pred HHHHHHHHHhhcCHH-----HHHHHHHHHHhhhccCCchhHHHHHH---hhccc-cccccccHHHHHHHHHHHhcccccc
Q 025427 141 YAIEIQMYTETKNNK-----KLKQLYQKALAIKSAIPHPRIMGIIR---ECGGK-MHMAERQWADAATDFFEAFKNYDEA 211 (253)
Q Consensus 141 ~~lE~~~y~~~~n~~-----klk~~y~~a~~~~~aI~~P~i~g~I~---e~~Gk-l~~~ekdy~tA~s~F~EAFe~yde~ 211 (253)
|.+=+++-.+.+.++ ..|+.+.-|.-. +|..+|-.-+ +...+ +.+.-|||.||.+ |-.=+=.-+.
T Consensus 258 Yilgl~iEl~Rr~l~~~~~~~~kR~lELAAYF----Thc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~-FArRLLel~p- 331 (422)
T PF06957_consen 258 YILGLSIELERRELPKDPVEDQKRNLELAAYF----THCKLQPSHLILALRSAMSQAFKLKNFITAAS-FARRLLELNP- 331 (422)
T ss_dssp HHHHHHHHHHHCTS-TTTHHHHHHHHHHHHHH----CCS---HHHHHHHHHHHHHHCCCTTBHHHHHH-HHHHHHCT---
T ss_pred HHHHHHHHHHHHhccccchhhHHHHHHHHHHH----hcCCCcHHHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHcCC-
Confidence 444444444444433 345444444333 3333333222 22222 3458999999954 3332222221
Q ss_pred cChhhHHHHHHHHHHH
Q 025427 212 GNQRRIQCLKYGFYLH 227 (253)
Q Consensus 212 g~~~a~~~LKYlvL~~ 227 (253)
..+.+-++=|.+-.|-
T Consensus 332 ~~~~a~qArKil~~~e 347 (422)
T PF06957_consen 332 SPEVAEQARKILQACE 347 (422)
T ss_dssp SCHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHh
Confidence 1245566666666654
No 253
>cd07353 harmonin_N N-terminal protein-binding module of harmonin. Harmonin is a postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold protein, which organizes the Usher protein network of the inner ear and the retina. Harmonin contains a single copy of this domain, which is found at the N-terminus of all three harmonin isoform classes (a, b and c), and which preceeds the first PDZ protein-binding domain, PDZ1. This harmonin_N domain binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network.
Probab=23.05 E-value=97 Score=23.14 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcccccccC-hhhHHHHHHH
Q 025427 195 ADAATDFFEAFKNYDEAGN-QRRIQCLKYG 223 (253)
Q Consensus 195 ~tA~s~F~EAFe~yde~g~-~~a~~~LKYl 223 (253)
+.-.+|||.+.+.|++++| |.=+.-||-.
T Consensus 19 EaEkd~lY~~Lr~YHqSm~lp~li~Dlk~V 48 (79)
T cd07353 19 EAEKDYLYDVLRMYHQSMNLPVLVGDLKLV 48 (79)
T ss_pred HHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 4456899999999999998 7777777654
No 254
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=22.97 E-value=1e+03 Score=25.99 Aligned_cols=44 Identities=11% Similarity=0.252 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhc
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVS 61 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s 61 (253)
|+..++.+|-+.|+.+++...|++++.+- +. =.-++|++-..++
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~-----n~~aLNn~AY~~a 161 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RD-----NPEIVKKLATSYE 161 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cc-----cHHHHHHHHHHHH
Confidence 89999999999999999999999999887 42 2344555555554
No 255
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=22.87 E-value=9.1e+02 Score=25.43 Aligned_cols=209 Identities=17% Similarity=0.213 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh-hhh------hhhh-----HHHHHHHHHHhcCCCCcchhHHHHHH
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-AVT------RNYS-----EKCINNIMDFVSGSASQNFSLLREFY 75 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~-~v~------ka~~-----~K~i~~ild~~s~~~~~~~~~l~~~y 75 (253)
-+|.-...-+.++.+.++++++...|..++.-. | ++. ++.. -++++.+.+..++-+-. .++. .
T Consensus 217 Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p---~ 291 (700)
T KOG1156|consen 217 DKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECP---R 291 (700)
T ss_pred HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccc---h
Confidence 455566667889999999999999998888766 4 221 1111 12222222222221100 0000 0
Q ss_pred HHHHHHHHH-hhhh--hhHHHHhhhH---------HHHHhhhcchhHHHHHHHHHHHHcccC---CCCchhh--hcchHH
Q 025427 76 QTTLKALEE-AKNE--RLWFKTNLKL---------CKIWFDMGEYGRMSKILKELHKSCQRE---DGTDDQK--KGSQLL 138 (253)
Q Consensus 76 ~~~~e~i~~-a~~e--rl~lk~~lkL---------a~l~l~~~~y~~a~~li~~L~~~l~~~---~~~dD~~--kk~~Ll 138 (253)
.+-+..++- .-++ +-|+++.|+. .+||=+..+-.=..+++.++...+... +..||.. .-+-++
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttll 371 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLL 371 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHH
Confidence 111111111 1122 3678888743 444444442222244555555544332 2224422 355667
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRI 217 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~ 217 (253)
=++-.=+|-|-..++++++-.....| |-| |.+.-.- ..-++|..+-|+..+|..-+=|| ..-|.++---.-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~A------IdHTPTliEly-~~KaRI~kH~G~l~eAa~~l~ea-~elD~aDR~INs 443 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLA------IDHTPTLIELY-LVKARIFKHAGLLDEAAAWLDEA-QELDTADRAINS 443 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHH------hccCchHHHHH-HHHHHHHHhcCChHHHHHHHHHH-HhccchhHHHHH
Confidence 77778888899999999887766554 555 6544322 33456677788888887654443 334443322333
Q ss_pred HHHHHHHHHHHh
Q 025427 218 QCLKYGFYLHLL 229 (253)
Q Consensus 218 ~~LKYlvL~~iL 229 (253)
+|-|||+.|+..
T Consensus 444 KcAKYmLrAn~i 455 (700)
T KOG1156|consen 444 KCAKYMLRANEI 455 (700)
T ss_pred HHHHHHHHcccc
Confidence 699999998753
No 256
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=22.58 E-value=3.4e+02 Score=26.07 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=60.6
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHH-HHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIE-IQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE-~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
-+|-+|+=....+++++|+.+.++++.. .-..||..... -|--.+| .++|...++..++++.-+++|-.--..+
T Consensus 5 ~sle~a~~~v~~~~~~~ai~~yk~iL~k---g~s~dek~~nE--qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft 79 (421)
T COG5159 5 SSLELANNAVKSNDIEKAIGEYKRILGK---GVSKDEKTLNE--QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT 79 (421)
T ss_pred chHHHHHHhhhhhhHHHHHHHHHHHhcC---CCChhhhhhhH--HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc
Confidence 3456677777788899888777777665 11124533222 2333333 4788889999999999999988877788
Q ss_pred chhHHHHHHhhccc
Q 025427 173 HPRIMGIIRECGGK 186 (253)
Q Consensus 173 ~P~i~g~I~e~~Gk 186 (253)
.|++.-+|+-.--+
T Consensus 80 k~k~~KiirtLiek 93 (421)
T COG5159 80 KPKITKIIRTLIEK 93 (421)
T ss_pred chhHHHHHHHHHHh
Confidence 89988888764433
No 257
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=21.89 E-value=8.3e+02 Score=24.63 Aligned_cols=48 Identities=10% Similarity=0.059 Sum_probs=35.7
Q ss_pred HHHHHHHHhhhhh---hHHHHhhhHHHHHhhh-cchhHHHHHHHHHHHHccc
Q 025427 77 TTLKALEEAKNER---LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQR 124 (253)
Q Consensus 77 ~~~e~i~~a~~er---l~lk~~lkLa~l~l~~-~~y~~a~~li~~L~~~l~~ 124 (253)
+|-..|+-++.-| -=....+..|..+|.. ++|.+|++.+......+..
T Consensus 497 L~E~~iQYaNRYR~~~~~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~veP 548 (560)
T PF06160_consen 497 LAEQLIQYANRYRSDNPEVDEALTEAEDLFRNEYDYEKALETIATALEKVEP 548 (560)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCC
Confidence 4444444444333 3367788999999999 9999999999999888754
No 258
>TIGR00208 fliS flagellar biosynthetic protein FliS. The function of this protein in flagellar biosynthesis is unknown, but appears to be regulatory. The member of this family in Vibrio parahaemolyticus is designated FlaJ (creating a synonym for FliS) and was shown essential for flagellin biosynthesis.
Probab=21.82 E-value=4.2e+02 Score=21.18 Aligned_cols=61 Identities=20% Similarity=0.230 Sum_probs=38.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcch-------hHHHHHHHHHHHHcccCCCCchhhhcchHHH
Q 025427 67 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEY-------GRMSKILKELHKSCQREDGTDDQKKGSQLLE 139 (253)
Q Consensus 67 ~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y-------~~a~~li~~L~~~l~~~~~~dD~~kk~~LlE 139 (253)
+.+++-..|+-+.. .++.|...++.|++ .+|..+|.+|...+.-..|++= ...|..
T Consensus 20 p~~Li~mLydg~i~--------------~l~~a~~ai~~~d~~~~~~~i~ka~~Ii~eL~~~Ld~e~ggei---A~nL~~ 82 (124)
T TIGR00208 20 PGELTLMLYNGCLK--------------FIRLAAQAIENDDIERKNENLIKAQNIIQELNFTLDREKNIEL---SASLGA 82 (124)
T ss_pred HHHHHHHHHHHHHH--------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccchHH---HHHHHH
Confidence 34555666666654 34556667777776 5568899999999976544433 444555
Q ss_pred HHHHH
Q 025427 140 VYAIE 144 (253)
Q Consensus 140 v~~lE 144 (253)
+|..=
T Consensus 83 LY~y~ 87 (124)
T TIGR00208 83 LYDYM 87 (124)
T ss_pred HHHHH
Confidence 55443
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=21.65 E-value=5.9e+02 Score=25.00 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=64.9
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCch---hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD---~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
.++.|+..|+|..|...=+...+++....+.|+ .......+=+|+-=.-.|.+++.+.++.....+++...+ +
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~----~ 289 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP----N 289 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC----C
Confidence 467788888888887766666666554443333 222333444555555555566666655555555554332 3
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
-+-|--|. |+-++.-++|+.|..+|--+-+=
T Consensus 290 N~KALyRr--G~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 290 NVKALYRR--GQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred chhHHHHH--HHHHHhhccHHHHHHHHHHHHHh
Confidence 35555554 77788889999999999888873
No 260
>PRK05685 fliS flagellar protein FliS; Validated
Probab=21.02 E-value=4.5e+02 Score=21.20 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=38.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchh-------HHHHHHHHHHHHcccCCCCchhhhcchHHH
Q 025427 67 NFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYG-------RMSKILKELHKSCQREDGTDDQKKGSQLLE 139 (253)
Q Consensus 67 ~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~-------~a~~li~~L~~~l~~~~~~dD~~kk~~LlE 139 (253)
+.+.+-..|+-+... ++.|...++.|++. +|..+|.+|...+.-..|++= ...|..
T Consensus 24 p~~Li~mLydgai~~--------------l~~A~~ai~~~~~~~~~~~l~ka~~Ii~eL~~sLd~e~ggei---A~~L~~ 86 (132)
T PRK05685 24 PHKLIQMLYEGALSF--------------LAQAKLAIEQGDIEAKGEYLSKAINIINGLRNSLDMEKGGEV---AKNLSA 86 (132)
T ss_pred HHHHHHHHHHHHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhcCCccccHH---HHHHHH
Confidence 344555666666553 34555666667766 678899999999976544433 445655
Q ss_pred HHHHHH
Q 025427 140 VYAIEI 145 (253)
Q Consensus 140 v~~lE~ 145 (253)
+|..=+
T Consensus 87 LY~y~~ 92 (132)
T PRK05685 87 LYDYMI 92 (132)
T ss_pred HHHHHH
Confidence 555433
No 261
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.87 E-value=1.6e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.479 Sum_probs=18.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHh
Q 025427 20 YYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 20 ~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.=+.|++++++.+|.+-+.++
T Consensus 16 ~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 16 LDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 346699999999999999888
No 262
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=20.72 E-value=4.5e+02 Score=25.57 Aligned_cols=47 Identities=21% Similarity=0.277 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNI 56 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~i 56 (253)
.-.++.+.+|-.+..|+|..+.+++-..+.++ +.-.+|+..-.--++
T Consensus 128 ~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~-~~~d~n~lsalwGKl 174 (432)
T KOG2758|consen 128 RIETLYKYAKFQYECGNYSGASDYLYFYRALV-SDPDRNYLSALWGKL 174 (432)
T ss_pred HHHHHHHHHHHHHhccCcccHHHHHHHHHHhc-CCcchhhHHHHHHHH
Confidence 34578899999999999999999999999999 877787765554443
No 263
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.18 E-value=1.7e+02 Score=21.73 Aligned_cols=19 Identities=21% Similarity=0.399 Sum_probs=17.3
Q ss_pred HhCCHHHHHHHHHHHHHHh
Q 025427 22 RLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 22 ~~~~~~~~~~~~~~ll~~~ 40 (253)
..|++++++++|.+.+.++
T Consensus 18 ~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 18 EKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HhhhHHHHHHHHHHHHHHH
Confidence 4589999999999999999
Done!