Query 025427
Match_columns 253
No_of_seqs 105 out of 284
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 10:03:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025427.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025427hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 2.3E-56 7.8E-61 422.7 22.7 222 4-236 13-239 (394)
2 4b4t_Q 26S proteasome regulato 100.0 1.6E-29 5.5E-34 229.1 24.1 220 5-235 50-277 (434)
3 4b4t_P 26S proteasome regulato 100.0 1.9E-29 6.5E-34 240.7 17.7 219 3-233 49-274 (445)
4 4b4t_R RPN7, 26S proteasome re 99.8 8.3E-20 2.8E-24 173.0 10.7 214 3-235 40-265 (429)
5 4b4t_O 26S proteasome regulato 99.0 3.5E-10 1.2E-14 106.2 8.5 181 51-238 5-231 (393)
6 3ro2_A PINS homolog, G-protein 99.0 3.6E-07 1.2E-11 77.1 24.3 216 3-231 36-275 (338)
7 3ro2_A PINS homolog, G-protein 98.9 1.9E-07 6.3E-12 78.8 19.1 195 7-213 120-338 (338)
8 3sf4_A G-protein-signaling mod 98.9 2.1E-06 7E-11 75.3 25.4 200 3-214 40-263 (406)
9 3sf4_A G-protein-signaling mod 98.8 6.8E-07 2.3E-11 78.3 21.7 212 8-231 125-361 (406)
10 4a1s_A PINS, partner of inscut 98.8 1.7E-06 5.9E-11 76.8 24.5 216 4-231 80-315 (411)
11 4a1s_A PINS, partner of inscut 98.8 1.5E-06 5.1E-11 77.3 23.3 230 6-244 122-368 (411)
12 3ro3_A PINS homolog, G-protein 98.7 9.9E-07 3.4E-11 66.5 16.9 161 5-213 4-164 (164)
13 3q15_A PSP28, response regulat 98.7 4.1E-06 1.4E-10 75.0 21.7 207 12-233 103-314 (378)
14 3nf1_A KLC 1, kinesin light ch 98.7 8.4E-06 2.9E-10 68.6 21.9 194 5-208 22-225 (311)
15 3ulq_A Response regulator aspa 98.6 7.1E-06 2.4E-10 73.3 22.0 203 16-233 109-317 (383)
16 3ulq_A Response regulator aspa 98.6 2.5E-05 8.5E-10 69.7 24.9 221 6-245 139-365 (383)
17 3u3w_A Transcriptional activat 98.6 3.9E-06 1.3E-10 72.8 18.9 200 7-217 72-276 (293)
18 3nf1_A KLC 1, kinesin light ch 98.6 1.1E-05 3.9E-10 67.8 20.7 192 6-207 65-307 (311)
19 3edt_B KLC 2, kinesin light ch 98.6 1.3E-05 4.5E-10 66.1 20.6 191 7-207 40-281 (283)
20 3gw4_A Uncharacterized protein 98.6 7.9E-06 2.7E-10 65.1 17.9 119 93-216 67-185 (203)
21 3t5x_A PCI domain-containing p 98.5 2.8E-08 9.7E-13 85.6 3.3 62 178-240 14-75 (203)
22 3t5v_B Nuclear mRNA export pro 98.5 2.1E-06 7.1E-11 82.4 15.8 219 9-236 41-284 (455)
23 2ifu_A Gamma-SNAP; membrane fu 98.5 4.3E-05 1.5E-09 67.0 22.5 184 10-205 36-222 (307)
24 2qfc_A PLCR protein; TPR, HTH, 98.5 1.1E-05 3.8E-10 69.9 17.9 196 10-216 75-275 (293)
25 3q15_A PSP28, response regulat 98.4 0.00012 4E-09 65.4 24.2 181 7-201 138-326 (378)
26 1qqe_A Vesicular transport pro 98.3 0.00025 8.5E-09 61.6 22.6 188 10-209 37-230 (292)
27 3ro3_A PINS homolog, G-protein 98.3 3.1E-05 1.1E-09 58.1 13.9 131 92-230 9-140 (164)
28 3gw4_A Uncharacterized protein 98.2 0.00016 5.4E-09 57.4 16.9 132 91-230 25-158 (203)
29 3edt_B KLC 2, kinesin light ch 98.2 0.00029 9.8E-09 57.9 18.7 181 21-210 12-201 (283)
30 1hz4_A MALT regulatory protein 98.1 0.00069 2.4E-08 59.6 22.1 199 5-214 9-210 (373)
31 3uq3_A Heat shock protein STI1 98.1 0.00068 2.3E-08 55.2 20.2 108 95-220 142-250 (258)
32 4b4t_Q 26S proteasome regulato 98.1 0.00085 2.9E-08 59.8 22.0 207 15-230 9-227 (434)
33 3hym_B Cell division cycle pro 98.0 0.00038 1.3E-08 58.9 17.2 103 96-207 197-299 (330)
34 3vtx_A MAMA; tetratricopeptide 98.0 0.00043 1.5E-08 54.7 16.3 164 12-207 7-170 (184)
35 3ieg_A DNAJ homolog subfamily 98.0 0.00079 2.7E-08 57.3 19.0 109 95-219 237-345 (359)
36 1fch_A Peroxisomal targeting s 98.0 0.00081 2.8E-08 58.2 19.0 124 95-236 220-349 (368)
37 3u3w_A Transcriptional activat 98.0 0.00022 7.4E-09 61.7 14.7 165 13-185 118-284 (293)
38 1qqe_A Vesicular transport pro 97.9 0.0021 7.2E-08 55.7 20.6 155 9-173 76-234 (292)
39 4i17_A Hypothetical protein; T 97.9 0.00084 2.9E-08 55.0 17.2 140 11-169 8-148 (228)
40 3qky_A Outer membrane assembly 97.9 0.0021 7.2E-08 53.9 20.1 205 9-223 14-238 (261)
41 3ieg_A DNAJ homolog subfamily 97.9 0.0019 6.5E-08 54.9 19.5 176 13-207 123-301 (359)
42 1hz4_A MALT regulatory protein 97.9 0.01 3.5E-07 52.0 25.7 188 8-208 51-245 (373)
43 4eqf_A PEX5-related protein; a 97.9 0.00096 3.3E-08 58.2 17.3 99 96-212 217-315 (365)
44 3u4t_A TPR repeat-containing p 97.8 0.00067 2.3E-08 56.3 15.3 111 97-221 147-262 (272)
45 2qfc_A PLCR protein; TPR, HTH, 97.8 0.0009 3.1E-08 57.7 16.6 154 13-177 118-276 (293)
46 2vq2_A PILW, putative fimbrial 97.8 0.0032 1.1E-07 49.9 18.4 171 8-208 6-177 (225)
47 2y4t_A DNAJ homolog subfamily 97.8 0.0025 8.7E-08 56.8 19.6 174 13-207 146-324 (450)
48 3uq3_A Heat shock protein STI1 97.8 0.0048 1.6E-07 50.0 19.7 178 10-208 5-203 (258)
49 2ifu_A Gamma-SNAP; membrane fu 97.8 0.0024 8.1E-08 55.7 18.9 115 92-213 76-190 (307)
50 3as5_A MAMA; tetratricopeptide 97.8 0.00058 2E-08 52.4 13.3 170 7-208 5-174 (186)
51 2ho1_A Type 4 fimbrial biogene 97.8 0.0029 9.9E-08 51.9 18.2 172 6-207 33-204 (252)
52 2y4t_A DNAJ homolog subfamily 97.8 0.0025 8.6E-08 56.8 19.1 172 11-207 178-358 (450)
53 2vq2_A PILW, putative fimbrial 97.8 0.0036 1.2E-07 49.7 18.1 178 11-218 43-220 (225)
54 3cv0_A Peroxisome targeting si 97.8 0.0096 3.3E-07 50.0 21.4 98 95-210 175-272 (327)
55 2xpi_A Anaphase-promoting comp 97.7 0.0015 5E-08 60.7 17.5 100 97-207 480-579 (597)
56 2ho1_A Type 4 fimbrial biogene 97.7 0.0058 2E-07 50.0 19.4 168 11-208 72-239 (252)
57 2q7f_A YRRB protein; TPR, prot 97.7 0.0034 1.1E-07 50.7 17.5 92 97-206 130-221 (243)
58 2xpi_A Anaphase-promoting comp 97.7 0.0014 4.9E-08 60.8 17.0 99 97-207 446-545 (597)
59 2yhc_A BAMD, UPF0169 lipoprote 97.7 0.0037 1.3E-07 51.7 17.9 170 8-233 2-200 (225)
60 2gw1_A Mitochondrial precursor 97.7 0.0015 5.2E-08 58.9 16.4 192 12-231 306-500 (514)
61 3hym_B Cell division cycle pro 97.7 0.0024 8.1E-08 53.9 16.7 100 97-208 164-266 (330)
62 2pl2_A Hypothetical conserved 97.6 0.0022 7.4E-08 53.1 15.4 164 11-207 6-180 (217)
63 2pl2_A Hypothetical conserved 97.6 0.0041 1.4E-07 51.4 17.0 167 11-204 40-211 (217)
64 2q7f_A YRRB protein; TPR, prot 97.6 0.0019 6.6E-08 52.2 14.6 173 4-208 17-189 (243)
65 4eqf_A PEX5-related protein; a 97.6 0.0058 2E-07 53.2 18.4 95 97-207 182-276 (365)
66 3qky_A Outer membrane assembly 97.6 0.013 4.5E-07 48.9 19.7 152 5-168 47-225 (261)
67 3u4t_A TPR repeat-containing p 97.5 0.0047 1.6E-07 51.0 16.1 168 11-208 4-172 (272)
68 3fp2_A TPR repeat-containing p 97.5 0.0047 1.6E-07 56.2 17.3 118 97-228 383-510 (537)
69 2fo7_A Synthetic consensus TPR 97.5 0.0076 2.6E-07 43.2 14.9 28 12-39 3-30 (136)
70 3cv0_A Peroxisome targeting si 97.5 0.0039 1.3E-07 52.4 15.1 103 96-210 210-318 (327)
71 2yhc_A BAMD, UPF0169 lipoprote 97.5 0.011 3.8E-07 48.8 17.7 152 5-166 36-212 (225)
72 3rkv_A Putative peptidylprolyl 97.5 0.0048 1.6E-07 48.0 14.5 137 9-189 10-147 (162)
73 2gw1_A Mitochondrial precursor 97.5 0.028 9.5E-07 50.5 21.4 181 9-207 5-266 (514)
74 3vtx_A MAMA; tetratricopeptide 97.5 0.0049 1.7E-07 48.4 14.4 132 11-168 40-171 (184)
75 4gcn_A Protein STI-1; structur 97.5 0.0057 2E-07 46.6 14.4 117 11-183 9-125 (127)
76 3fp2_A TPR repeat-containing p 97.4 0.0042 1.5E-07 56.5 15.8 33 10-43 243-275 (537)
77 4b4t_S RPN3, 26S proteasome re 97.4 0.00046 1.6E-08 67.2 9.4 140 88-232 181-326 (523)
78 1fch_A Peroxisomal targeting s 97.4 0.013 4.4E-07 50.5 17.7 172 11-206 65-279 (368)
79 4gcn_A Protein STI-1; structur 97.4 0.0015 5.2E-08 49.9 10.3 100 97-208 13-113 (127)
80 2xev_A YBGF; tetratricopeptide 97.3 0.0045 1.5E-07 45.5 12.3 113 96-222 6-118 (129)
81 1w3b_A UDP-N-acetylglucosamine 97.3 0.038 1.3E-06 48.4 20.2 30 11-40 68-97 (388)
82 1w3b_A UDP-N-acetylglucosamine 97.3 0.071 2.4E-06 46.7 23.0 94 97-208 242-335 (388)
83 1elr_A TPR2A-domain of HOP; HO 97.2 0.004 1.4E-07 45.0 10.3 101 96-208 8-109 (131)
84 1xnf_A Lipoprotein NLPI; TPR, 97.1 0.078 2.7E-06 43.3 21.4 167 6-206 39-205 (275)
85 3urz_A Uncharacterized protein 97.1 0.03 1E-06 45.8 16.1 32 12-44 6-37 (208)
86 1elr_A TPR2A-domain of HOP; HO 97.1 0.032 1.1E-06 40.0 14.5 116 11-182 5-120 (131)
87 1a17_A Serine/threonine protei 97.1 0.0097 3.3E-07 45.1 12.2 33 8-40 11-43 (166)
88 3as5_A MAMA; tetratricopeptide 97.0 0.045 1.5E-06 41.5 15.6 135 10-170 42-176 (186)
89 4gyw_A UDP-N-acetylglucosamine 97.0 0.02 6.8E-07 57.3 16.7 165 10-206 9-173 (723)
90 3mkr_A Coatomer subunit epsilo 97.0 0.035 1.2E-06 48.3 15.9 118 94-232 132-249 (291)
91 3n71_A Histone lysine methyltr 96.9 0.032 1.1E-06 53.4 16.8 143 17-168 316-465 (490)
92 2fbn_A 70 kDa peptidylprolyl i 96.9 0.031 1E-06 44.8 14.2 116 9-168 37-152 (198)
93 4i17_A Hypothetical protein; T 96.9 0.041 1.4E-06 44.7 14.9 99 97-207 47-146 (228)
94 4abn_A Tetratricopeptide repea 96.9 0.017 5.7E-07 54.0 14.0 168 10-207 102-287 (474)
95 4g1t_A Interferon-induced prot 96.9 0.021 7.3E-07 51.2 14.2 185 11-206 248-458 (472)
96 1ouv_A Conserved hypothetical 96.9 0.16 5.4E-06 42.3 21.3 158 11-207 7-179 (273)
97 3upv_A Heat shock protein STI1 96.9 0.056 1.9E-06 39.7 14.2 98 11-168 5-102 (126)
98 2xev_A YBGF; tetratricopeptide 96.8 0.044 1.5E-06 40.0 13.3 122 12-187 4-126 (129)
99 2lni_A Stress-induced-phosphop 96.8 0.044 1.5E-06 39.6 13.1 37 4-40 10-46 (133)
100 1p5q_A FKBP52, FK506-binding p 96.8 0.023 7.9E-07 50.6 13.6 150 9-209 146-296 (336)
101 1xnf_A Lipoprotein NLPI; TPR, 96.8 0.12 4.1E-06 42.2 16.9 167 11-207 78-244 (275)
102 4gco_A Protein STI-1; structur 96.7 0.073 2.5E-06 40.3 14.3 30 11-40 14-43 (126)
103 1hh8_A P67PHOX, NCF-2, neutrop 96.7 0.017 5.7E-07 46.2 11.1 113 96-221 41-164 (213)
104 4gco_A Protein STI-1; structur 96.7 0.018 6.2E-07 43.8 10.7 105 97-221 18-122 (126)
105 4ga2_A E3 SUMO-protein ligase 96.7 0.028 9.6E-07 43.8 11.7 112 96-232 35-147 (150)
106 1hh8_A P67PHOX, NCF-2, neutrop 96.6 0.096 3.3E-06 41.6 15.1 143 11-170 7-153 (213)
107 2lni_A Stress-induced-phosphop 96.6 0.023 7.9E-07 41.1 10.2 97 94-208 18-114 (133)
108 1ouv_A Conserved hypothetical 96.6 0.27 9.1E-06 40.9 17.9 29 11-39 39-71 (273)
109 2vyi_A SGTA protein; chaperone 96.5 0.043 1.5E-06 39.2 11.3 96 94-207 14-109 (131)
110 3q49_B STIP1 homology and U bo 96.5 0.14 4.7E-06 37.6 14.3 115 10-184 9-126 (137)
111 3sz7_A HSC70 cochaperone (SGT) 96.5 0.15 5E-06 39.4 15.0 36 7-43 8-43 (164)
112 1elw_A TPR1-domain of HOP; HOP 96.5 0.12 4.2E-06 36.1 13.5 97 11-167 5-101 (118)
113 3q49_B STIP1 homology and U bo 96.4 0.034 1.2E-06 41.0 10.2 97 96-210 13-109 (137)
114 3upv_A Heat shock protein STI1 96.4 0.059 2E-06 39.6 11.5 112 97-226 9-121 (126)
115 2dba_A Smooth muscle cell asso 96.4 0.079 2.7E-06 39.1 12.2 103 9-168 27-129 (148)
116 1kt0_A FKBP51, 51 kDa FK506-bi 96.4 0.049 1.7E-06 50.7 13.2 149 10-209 268-417 (457)
117 3sz7_A HSC70 cochaperone (SGT) 96.3 0.048 1.7E-06 42.3 11.2 96 96-209 15-110 (164)
118 2dba_A Smooth muscle cell asso 96.3 0.021 7.1E-07 42.3 8.6 99 95-208 31-129 (148)
119 4abn_A Tetratricopeptide repea 96.3 0.23 7.9E-06 46.2 17.5 140 11-170 138-290 (474)
120 1ihg_A Cyclophilin 40; ppiase 96.3 0.053 1.8E-06 49.3 12.8 116 10-169 223-338 (370)
121 1elw_A TPR1-domain of HOP; HOP 96.3 0.034 1.2E-06 39.1 9.2 94 96-207 8-101 (118)
122 2kck_A TPR repeat; tetratricop 96.2 0.03 1E-06 39.1 8.7 97 96-208 10-107 (112)
123 3mkr_A Coatomer subunit epsilo 96.2 0.33 1.1E-05 42.0 17.2 157 11-208 35-196 (291)
124 2fo7_A Synthetic consensus TPR 96.2 0.2 6.7E-06 35.5 13.4 94 96-207 5-98 (136)
125 1a17_A Serine/threonine protei 96.2 0.088 3E-06 39.6 11.6 95 96-208 17-111 (166)
126 2vgx_A Chaperone SYCD; alterna 96.1 0.11 3.8E-06 40.4 12.1 96 95-208 24-119 (148)
127 2xcb_A PCRH, regulatory protei 96.0 0.095 3.2E-06 39.8 11.1 95 96-208 22-116 (142)
128 1na0_A Designed protein CTPR3; 96.0 0.24 8.3E-06 34.7 13.6 101 8-168 7-107 (125)
129 2vsy_A XCC0866; transferase, g 96.0 0.33 1.1E-05 45.5 16.9 139 11-175 24-165 (568)
130 2e2e_A Formate-dependent nitri 96.0 0.35 1.2E-05 37.4 14.6 30 11-40 45-74 (177)
131 2vyi_A SGTA protein; chaperone 95.9 0.28 9.6E-06 34.7 14.5 36 5-40 7-42 (131)
132 2xcb_A PCRH, regulatory protei 95.9 0.37 1.3E-05 36.4 14.0 100 10-169 18-117 (142)
133 4g1t_A Interferon-induced prot 95.8 0.067 2.3E-06 48.0 10.9 33 8-40 49-81 (472)
134 3rkv_A Putative peptidylprolyl 95.8 0.029 9.8E-07 43.5 7.4 105 97-207 16-126 (162)
135 1na0_A Designed protein CTPR3; 95.8 0.099 3.4E-06 36.9 9.7 94 96-207 13-106 (125)
136 2fbn_A 70 kDa peptidylprolyl i 95.7 0.14 4.8E-06 40.8 11.5 106 96-207 42-151 (198)
137 2if4_A ATFKBP42; FKBP-like, al 95.7 0.05 1.7E-06 48.5 9.4 152 9-208 178-329 (338)
138 2l6j_A TPR repeat-containing p 95.7 0.0079 2.7E-07 42.8 3.4 90 96-197 8-97 (111)
139 3rjv_A Putative SEL1 repeat pr 95.7 0.7 2.4E-05 37.6 19.6 181 11-221 19-207 (212)
140 3n71_A Histone lysine methyltr 95.6 0.15 5.3E-06 48.6 13.0 122 96-222 313-440 (490)
141 2kck_A TPR repeat; tetratricop 95.5 0.12 4.2E-06 35.8 9.4 98 12-167 8-106 (112)
142 3urz_A Uncharacterized protein 95.4 0.13 4.5E-06 41.8 10.3 94 96-207 8-117 (208)
143 1hxi_A PEX5, peroxisome target 95.3 0.1 3.5E-06 39.1 8.8 94 96-207 21-114 (121)
144 2pzi_A Probable serine/threoni 95.2 0.27 9.1E-06 48.1 13.7 164 11-201 434-599 (681)
145 4ga2_A E3 SUMO-protein ligase 95.1 0.3 1E-05 37.7 11.3 60 97-168 70-130 (150)
146 3gyz_A Chaperone protein IPGC; 95.1 0.19 6.4E-06 39.9 10.2 96 95-208 39-134 (151)
147 3qou_A Protein YBBN; thioredox 95.1 0.89 3E-05 38.9 15.2 32 11-43 118-149 (287)
148 4gyw_A UDP-N-acetylglucosamine 95.0 0.25 8.7E-06 49.3 13.2 132 11-168 44-175 (723)
149 2vsy_A XCC0866; transferase, g 95.0 0.29 9.9E-06 45.9 12.8 156 23-210 2-160 (568)
150 2e2e_A Formate-dependent nitri 94.9 0.4 1.4E-05 37.1 11.4 112 96-227 48-162 (177)
151 2c2l_A CHIP, carboxy terminus 94.8 0.13 4.3E-06 44.3 8.9 94 97-208 9-102 (281)
152 2vgx_A Chaperone SYCD; alterna 94.7 1.1 3.8E-05 34.5 13.9 102 9-170 20-121 (148)
153 2kc7_A BFR218_protein; tetratr 94.7 0.32 1.1E-05 33.9 9.5 62 96-169 4-66 (99)
154 3qwp_A SET and MYND domain-con 94.6 0.39 1.3E-05 44.8 12.5 129 94-227 289-423 (429)
155 3ma5_A Tetratricopeptide repea 94.4 0.26 9E-06 35.3 8.7 65 96-172 11-75 (100)
156 1ihg_A Cyclophilin 40; ppiase 94.2 0.38 1.3E-05 43.6 11.2 106 96-207 227-336 (370)
157 3k9i_A BH0479 protein; putativ 94.2 0.57 1.9E-05 34.1 10.3 66 93-170 28-93 (117)
158 4g26_A Pentatricopeptide repea 94.1 1.3 4.3E-05 42.1 15.1 166 12-203 28-200 (501)
159 1p5q_A FKBP52, FK506-binding p 94.0 0.5 1.7E-05 41.8 11.4 106 96-207 151-259 (336)
160 2ond_A Cleavage stimulation fa 93.9 2.2 7.4E-05 36.5 14.9 171 12-210 101-273 (308)
161 2r5s_A Uncharacterized protein 93.8 1.4 4.8E-05 34.3 12.5 60 96-165 112-171 (176)
162 3qww_A SET and MYND domain-con 93.7 0.65 2.2E-05 43.6 12.1 105 104-213 310-418 (433)
163 2c2l_A CHIP, carboxy terminus 93.6 0.6 2.1E-05 40.0 10.9 99 11-123 5-103 (281)
164 1kt0_A FKBP51, 51 kDa FK506-bi 93.2 0.48 1.6E-05 43.9 10.2 106 96-207 272-380 (457)
165 3gyz_A Chaperone protein IPGC; 93.1 0.76 2.6E-05 36.3 9.9 98 10-122 36-134 (151)
166 3mv2_B Coatomer subunit epsilo 92.9 0.39 1.3E-05 43.5 8.8 99 96-209 104-209 (310)
167 2ond_A Cleavage stimulation fa 92.6 4.4 0.00015 34.5 14.8 137 12-170 136-273 (308)
168 1na3_A Designed protein CTPR2; 92.5 0.96 3.3E-05 30.3 8.6 61 96-168 13-73 (91)
169 2kat_A Uncharacterized protein 92.4 0.88 3E-05 32.6 8.7 63 96-170 23-85 (115)
170 2h6f_A Protein farnesyltransfe 92.3 6.3 0.00022 35.8 17.2 135 10-170 97-232 (382)
171 1wao_1 Serine/threonine protei 91.9 0.22 7.5E-06 46.7 6.1 93 97-207 11-103 (477)
172 3qww_A SET and MYND domain-con 91.6 1.8 6.1E-05 40.6 11.9 86 92-181 340-428 (433)
173 2r5s_A Uncharacterized protein 91.5 0.47 1.6E-05 37.1 6.8 23 185-207 115-137 (176)
174 1wao_1 Serine/threonine protei 91.3 0.059 2E-06 50.6 1.4 127 12-162 8-134 (477)
175 1xi4_A Clathrin heavy chain; a 91.1 3.4 0.00012 45.0 14.6 24 14-37 1053-1076(1630)
176 3mv2_B Coatomer subunit epsilo 90.9 3.2 0.00011 37.4 12.5 129 90-232 134-270 (310)
177 2hr2_A Hypothetical protein; a 90.7 5.9 0.0002 32.2 13.5 107 12-124 13-134 (159)
178 4f3v_A ESX-1 secretion system 90.5 0.34 1.2E-05 43.3 5.5 95 95-206 105-199 (282)
179 2v5f_A Prolyl 4-hydroxylase su 90.3 2 6.8E-05 31.2 8.8 78 96-180 9-86 (104)
180 2hr2_A Hypothetical protein; a 90.1 2.4 8.1E-05 34.6 9.9 111 96-208 15-132 (159)
181 3k9i_A BH0479 protein; putativ 89.7 0.8 2.7E-05 33.3 6.2 90 104-208 2-91 (117)
182 2if4_A ATFKBP42; FKBP-like, al 89.7 0.78 2.7E-05 40.6 7.2 116 97-220 184-304 (338)
183 1hxi_A PEX5, peroxisome target 89.7 2.4 8.1E-05 31.3 9.0 95 13-121 20-114 (121)
184 3qou_A Protein YBBN; thioredox 89.7 1.1 3.6E-05 38.4 7.9 100 96-207 121-248 (287)
185 2ooe_A Cleavage stimulation fa 89.5 13 0.00043 34.2 16.8 172 10-209 321-494 (530)
186 2xm6_A Protein corresponding t 89.3 12 0.00043 33.8 18.9 92 97-206 152-251 (490)
187 2kat_A Uncharacterized protein 88.3 2.3 8E-05 30.3 7.9 76 139-220 20-95 (115)
188 2xm6_A Protein corresponding t 88.0 15 0.00052 33.3 18.7 161 11-206 40-215 (490)
189 2pzi_A Probable serine/threoni 87.5 4 0.00014 39.7 11.2 92 94-198 435-527 (681)
190 3ffl_A Anaphase-promoting comp 87.4 2.6 8.7E-05 35.1 8.3 94 5-121 58-151 (167)
191 3txn_A 26S proteasome regulato 87.0 15 0.00053 34.0 14.4 121 97-219 24-181 (394)
192 4b4t_R RPN7, 26S proteasome re 86.0 11 0.00037 34.8 12.8 106 11-121 132-237 (429)
193 2l6j_A TPR repeat-containing p 86.0 5.2 0.00018 27.5 8.4 70 138-213 4-73 (111)
194 3ma5_A Tetratricopeptide repea 84.2 4.2 0.00014 28.7 7.3 77 139-221 8-84 (100)
195 4b4t_P 26S proteasome regulato 84.1 14 0.00047 34.4 12.7 110 11-167 138-247 (445)
196 3qwp_A SET and MYND domain-con 82.5 5.7 0.00019 36.9 9.2 101 144-245 293-397 (429)
197 3rjv_A Putative SEL1 repeat pr 82.4 6.2 0.00021 31.8 8.5 24 97-120 23-46 (212)
198 2kc7_A BFR218_protein; tetratr 82.2 5.3 0.00018 27.3 7.0 50 12-62 37-86 (99)
199 1klx_A Cysteine rich protein B 81.4 14 0.00047 27.9 9.7 101 98-220 31-135 (138)
200 3ffl_A Anaphase-promoting comp 81.3 8.9 0.0003 31.7 9.0 74 97-173 25-98 (167)
201 1na3_A Designed protein CTPR2; 77.1 13 0.00044 24.4 8.6 64 138-207 9-72 (91)
202 1b89_A Protein (clathrin heavy 76.8 27 0.00091 33.1 11.9 84 13-113 210-303 (449)
203 2ra1_A Surface layer protein; 76.7 50 0.0017 30.9 13.4 119 12-166 105-230 (412)
204 2h6f_A Protein farnesyltransfe 75.6 45 0.0016 30.0 17.8 162 11-204 132-302 (382)
205 2ooe_A Cleavage stimulation fa 75.2 49 0.0017 30.1 14.7 135 12-168 358-493 (530)
206 4f3v_A ESX-1 secretion system 74.5 21 0.00073 31.5 10.1 118 75-207 118-237 (282)
207 2wpv_A GET4, UPF0363 protein Y 74.2 49 0.0017 29.7 15.4 138 17-164 60-214 (312)
208 2ff4_A Probable regulatory pro 74.0 51 0.0017 29.8 14.7 82 89-182 168-253 (388)
209 2v5f_A Prolyl 4-hydroxylase su 73.8 9.5 0.00032 27.4 6.4 75 146-222 13-88 (104)
210 3e4b_A ALGK; tetratricopeptide 72.9 55 0.0019 29.6 16.2 99 97-218 253-358 (452)
211 3bee_A Putative YFRE protein; 68.6 7.5 0.00026 28.0 4.8 33 10-43 43-75 (93)
212 1xi4_A Clathrin heavy chain; a 66.6 1.5E+02 0.0053 32.5 16.0 167 12-188 1136-1344(1630)
213 4g26_A Pentatricopeptide repea 65.9 33 0.0011 32.2 9.9 102 12-125 107-208 (501)
214 4b0z_A RPN12, 26S proteasome r 65.0 52 0.0018 27.8 10.2 30 96-125 11-40 (229)
215 4b4t_O 26S proteasome regulato 65.0 14 0.00049 33.8 7.0 128 24-156 53-187 (393)
216 3axj_A GM27569P, translin; tra 61.7 79 0.0027 27.3 12.7 54 171-224 150-217 (249)
217 3bee_A Putative YFRE protein; 60.0 44 0.0015 23.8 8.8 74 97-182 11-88 (93)
218 2br9_A 14-3-3E, 14-3-3 protein 59.0 88 0.003 26.9 16.9 60 154-213 146-212 (234)
219 3e4b_A ALGK; tetratricopeptide 58.8 1E+02 0.0035 27.7 12.0 92 97-206 181-279 (452)
220 2o8p_A 14-3-3 domain containin 56.7 96 0.0033 26.7 12.2 56 151-206 138-196 (227)
221 1klx_A Cysteine rich protein B 51.8 12 0.00042 28.2 3.5 67 146-220 33-99 (138)
222 4e6h_A MRNA 3'-END-processing 46.9 1.4E+02 0.005 29.2 11.2 107 97-209 383-501 (679)
223 1j1j_A Translin; testis/brain 44.4 1.5E+02 0.0051 25.3 10.2 54 171-224 147-214 (240)
224 1nzn_A CGI-135 protein, fissio 44.4 52 0.0018 25.7 6.1 48 7-58 71-118 (126)
225 1pc2_A Mitochondria fission pr 42.4 54 0.0018 26.3 6.1 46 9-58 70-115 (152)
226 2bf9_A Pancreatic hormone; tur 40.1 24 0.00081 22.0 2.7 22 25-47 13-34 (36)
227 3lpz_A GET4 (YOR164C homolog); 38.5 2.2E+02 0.0077 25.7 16.5 102 48-163 92-212 (336)
228 4e6h_A MRNA 3'-END-processing 38.3 2.9E+02 0.01 27.0 18.6 60 97-168 474-534 (679)
229 2npm_A 14-3-3 domain containin 37.8 2.1E+02 0.0071 25.0 18.2 60 154-213 172-237 (260)
230 1b89_A Protein (clathrin heavy 35.7 70 0.0024 30.2 6.6 168 12-204 124-308 (449)
231 2d2s_A Exocyst complex compone 35.3 2.1E+02 0.007 24.3 9.6 37 90-126 16-52 (235)
232 3fap_B FRAP, FKBP12-rapamycin 34.2 93 0.0032 23.0 5.8 30 99-128 17-46 (94)
233 1pc2_A Mitochondria fission pr 33.1 1.9E+02 0.0063 23.1 10.2 65 93-168 33-101 (152)
234 2l60_A Peptide YY; GPCR ligand 32.3 36 0.0012 21.7 2.7 23 24-47 16-38 (41)
235 2jxc_B Stonin-2, stoned B; end 32.3 8.7 0.0003 24.7 -0.2 12 231-242 30-41 (45)
236 3kmp_A SMAD1-MH1; protein-DNA 31.5 31 0.0011 27.1 2.9 31 4-34 17-48 (124)
237 1bba_A Bovine pancreatic polyp 31.4 25 0.00084 21.9 1.8 22 25-47 13-34 (36)
238 1f8p_A Neuropeptide Y (PNPY); 30.5 29 0.00099 21.7 2.0 23 25-48 13-35 (37)
239 1zu2_A Mitochondrial import re 30.3 2.1E+02 0.0071 22.8 8.7 60 97-168 41-121 (158)
240 4a5x_A MITD1, MIT domain-conta 29.8 1.5E+02 0.005 21.3 6.2 20 21-40 27-46 (86)
241 2yru_A Steroid receptor RNA ac 29.1 1.9E+02 0.0066 22.1 8.4 74 24-120 13-89 (118)
242 2rpa_A Katanin P60 ATPase-cont 27.4 51 0.0018 23.7 3.2 38 95-135 15-56 (78)
243 3o48_A Mitochondria fission 1 26.9 1E+02 0.0035 24.4 5.2 46 9-58 77-122 (134)
244 3ly7_A Transcriptional activat 25.7 93 0.0032 28.6 5.5 75 148-237 287-361 (372)
245 1y8m_A FIS1; mitochondria, unk 25.5 1.1E+02 0.0037 24.6 5.2 46 9-58 76-121 (144)
246 3arc_I Photosystem II reaction 24.4 15 0.0005 23.1 -0.2 10 244-253 14-23 (38)
247 2z3q_A Interleukin-15, IL-15; 23.4 2E+02 0.0069 22.3 6.2 101 106-210 5-113 (119)
248 3mkq_A Coatomer beta'-subunit; 23.3 3E+02 0.01 25.8 8.7 26 14-39 685-710 (814)
249 2qx5_A Nucleoporin NIC96; mRNA 23.2 3.8E+02 0.013 26.4 9.6 31 89-119 533-565 (661)
250 2z2q_B Coat protein gamma; wil 22.5 95 0.0032 19.9 3.4 32 154-185 4-41 (44)
251 2npu_A FKBP12-rapamycin comple 21.8 2.5E+02 0.0084 21.9 6.5 31 10-40 40-70 (126)
252 1ozj_A SMAD 3; MAD homology do 21.3 1E+02 0.0035 24.8 4.2 32 4-35 26-57 (144)
253 3fap_B FRAP, FKBP12-rapamycin 20.7 2E+02 0.007 21.1 5.6 31 10-40 10-40 (94)
254 1zu2_A Mitochondrial import re 20.5 3.2E+02 0.011 21.6 8.2 56 152-210 60-116 (158)
255 3qb5_K Translin-associated pro 20.3 70 0.0024 28.3 3.4 55 170-224 181-250 (290)
256 1o9d_A 14-3-3-like protein C; 20.1 4.3E+02 0.015 22.9 15.9 59 154-212 151-216 (260)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=2.3e-56 Score=422.66 Aligned_cols=222 Identities=23% Similarity=0.350 Sum_probs=212.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
+..++++.|+.+|+++|+++|+++++.+++++++||+ +.++|||++|+||+|||.++.+|++ .+.++++|+++|+
T Consensus 13 ~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~kak~~k~v~~l~~~~~~~~~~----~~~~~~~~~~~~~ 87 (394)
T 3txn_A 13 ERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFL-SSISKAKAAKLVRSLVDMFLDMDAG----TGIEVQLCKDCIE 87 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGG-GGSCHHHHHHHHHHHHHHHTTSCCC----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhcCCCc----HHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999 9999999999999999999999875 3688999999999
Q ss_pred Hhhhh-hhHHHHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 025427 84 EAKNE-RLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 160 (253)
Q Consensus 84 ~a~~e-rl~lk~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~ 160 (253)
||+++ |+|||+++ ||+.+|++.|+|++|+++|++|+++|++. || +++++|||++||++|++++|++|+|++
T Consensus 88 ~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~---dd---~~~llev~lle~~~~~~~~n~~k~k~~ 161 (394)
T 3txn_A 88 WAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKL---DD---KNLLVEVQLLESKTYHALSNLPKARAA 161 (394)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS---SC---THHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcc---cc---chhHHHHHHHHHHHHHHhccHHHHHHH
Confidence 99998 59999999 99999999999999999999999999998 78 999999999999999999999999999
Q ss_pred HHHHHhhhccCCc-hhHHHHHHhhcccccc-ccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCch
Q 025427 161 YQKALAIKSAIPH-PRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIYF 236 (253)
Q Consensus 161 y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~-~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id~ 236 (253)
|++|++++|+||| |++||.|++|||++|| .+|||++|+++|||||++|+++|+|++.++||||+||+||+++..|+
T Consensus 162 l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el 239 (394)
T 3txn_A 162 LTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDV 239 (394)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999955 9999999999999999 99999999999999999999999999999999999999999995554
No 2
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.6e-29 Score=229.08 Aligned_cols=220 Identities=18% Similarity=0.288 Sum_probs=200.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
...|.++|+.+++++|.+.|+++++.++|++++++. +.++++++++.++++++.+...++. .+...+.+.++++|
T Consensus 50 ~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~ 124 (434)
T 4b4t_Q 50 RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM-MQFAKSKTVKVLKTLIEKFEQVPDS----LDDQIFVCEKSIEF 124 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH-HTSCHHHHHHHHHHHHHHHCSCCSC----HHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHccchHHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999 9999999999999999999987764 34666788888888
Q ss_pred hhhh---hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 85 AKNE---RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 85 a~~e---rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
++.. .+|.+...+||.+|.+.|+|++|.+++++++..+++. +| +...+|++..++++|..++|+++++..|
T Consensus 125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 198 (434)
T 4b4t_Q 125 AKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKL---DD---KPSLVDVHLLESKVYHKLRNLAKSKASL 198 (434)
T ss_dssp HHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS---SC---STHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhc---cc---chhHHHHHHHHHHHHHHhCcHHHHHHHH
Confidence 7743 3666777799999999999999999999999999987 67 8889999999999999999999999999
Q ss_pred HHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC----hhhHHHHHHHHHHHHhccCCCc
Q 025427 162 QKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN----QRRIQCLKYGFYLHLLFLISIY 235 (253)
Q Consensus 162 ~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~----~~a~~~LKYlvL~~iL~~s~id 235 (253)
++|+++.++++| |.++|.+++++|.+|+.++||++|+++|++||+.|++.++ +.+..+++|+++|.++.+...+
T Consensus 199 ~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 277 (434)
T 4b4t_Q 199 TAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDD 277 (434)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhH
Confidence 999999999999 7899999999999999999999999999999999998765 5889999999999999876543
No 3
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.9e-29 Score=240.73 Aligned_cols=219 Identities=12% Similarity=0.151 Sum_probs=188.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 025427 3 PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 82 (253)
Q Consensus 3 ~~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i 82 (253)
..++.|++++++++++++++.|+++.+.+++..+ ... ....|..++|+|+.++++++..|+.+. .+...+.+.+
T Consensus 49 ~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L-skk-r~qlk~ai~~~V~~~~~~l~~~~~~d~----~~~~~~i~~l 122 (445)
T 4b4t_P 49 ASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL-SKK-HGQLKLSIQYMIQKVMEYLKSSKSLDL----NTRISVIETI 122 (445)
T ss_dssp SCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HTT-TTTSHHHHHHHHHHHHHHHHHHCTTHH----HHHHHHHHCC
T ss_pred ccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHH-hhhhHHHHHHHHHHHHHHHhcCCchhH----HHHHHHHHHH
Confidence 3578999999999999999999999999988644 444 456788899999999999987765433 2223344444
Q ss_pred HHhhhhhhHH---HHhh--hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHH
Q 025427 83 EEAKNERLWF---KTNL--KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 157 (253)
Q Consensus 83 ~~a~~erl~l---k~~l--kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~kl 157 (253)
.+..+.|+|+ |+++ +||++|.+.|+|.+|..+|++|+.++... +| +..++|+++.|+++|.+.+|++++
T Consensus 123 ~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~---~~---~~~kve~~l~q~rl~l~~~d~~~a 196 (445)
T 4b4t_P 123 RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGS---ME---MSEKIQFILEQMELSILKGDYSQA 196 (445)
T ss_dssp SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSS---SC---HHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc---cc---HHHHHHHHHHHHHHHHHCCCHHHH
Confidence 4444557888 7777 99999999999999999999999999876 78 899999999999999999999999
Q ss_pred HHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChh-hHHHHHHHHHHHHhccCC
Q 025427 158 KQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQR-RIQCLKYGFYLHLLFLIS 233 (253)
Q Consensus 158 k~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~-a~~~LKYlvL~~iL~~s~ 233 (253)
+.+++++++..+++++ |.+++.+++|+|++|++++||.+|+++|+|+|++|+..|+|+ +..+|+|+|+|.||+..+
T Consensus 197 ~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~ 274 (445)
T 4b4t_P 197 TVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYG 274 (445)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCS
T ss_pred HHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999988888776 999999999999999999999999999999999999999975 567889999998887544
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.80 E-value=8.3e-20 Score=173.01 Aligned_cols=214 Identities=12% Similarity=0.056 Sum_probs=169.1
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh-----hhhhhhhHH-------HHHHHHHHhcCCCCcchhH
Q 025427 3 PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-----AVTRNYSEK-------CINNIMDFVSGSASQNFSL 70 (253)
Q Consensus 3 ~~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~-----~v~ka~~~K-------~i~~ild~~s~~~~~~~~~ 70 (253)
++..+|.++++.++++.. .|..+|+.+..-+.. ..++..... ....+++.+.. .+.+.
T Consensus 40 ~~~~~~~~~~l~~~ik~~-------~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~---~n~~~ 109 (429)
T 4b4t_R 40 IEQRKEAAEFVLAKIKEE-------EMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQELYNELCK---KNESK 109 (429)
T ss_dssp --CHHHHHHHHHHHHHHT-------CCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCSSCTTTTC---CSSCC
T ss_pred hhhHHHHHHHHHHHHHHh-------CCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHHHHHHHHH---HHHHH
Confidence 356778888887777542 455567776654411 112222222 23333444432 34445
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh
Q 025427 71 LREFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE 150 (253)
Q Consensus 71 l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~ 150 (253)
++.+.+...++-+...+++.|.+..+++|..|++.|++++|.+.+.+++..|... ...+|+++..++++..
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---------~~kid~~l~~irl~l~ 180 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAIST---------GAKIDVMLTIARLGFF 180 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---------CSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHH
Confidence 6666666665544455677899999999999999999999999999999998653 3568999999999999
Q ss_pred hcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhc
Q 025427 151 TKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLF 230 (253)
Q Consensus 151 ~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~ 230 (253)
.+|+..++..+.+|.+......+|..++.++.|+|++|+.++||.+|.++|+|+|.+|++.+.+.+.++++|++||.+++
T Consensus 181 ~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~ 260 (429)
T 4b4t_R 181 YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFT 260 (429)
T ss_dssp HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCc
Q 025427 231 LISIY 235 (253)
Q Consensus 231 ~s~id 235 (253)
.+..|
T Consensus 261 ~~r~~ 265 (429)
T 4b4t_R 261 LERTD 265 (429)
T ss_dssp TCHHH
T ss_pred CCHHH
Confidence 66444
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.04 E-value=3.5e-10 Score=106.18 Aligned_cols=181 Identities=18% Similarity=0.194 Sum_probs=135.8
Q ss_pred HHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHHhh--------------------------
Q 025427 51 KCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIWFD-------------------------- 104 (253)
Q Consensus 51 K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~l~-------------------------- 104 (253)
.-|+++|+..+...+ +++.+.+++ ++...++|||...+++|..++.+
T Consensus 5 ~~i~~~l~~~~~~~~--~~l~~~~~~-----le~~~~~kLWhqlt~~L~~~~~~~~~~~~~~~ly~~fi~~f~~kin~L~ 77 (393)
T 4b4t_O 5 HEIDTILSTLRMEAD--PSLHPLFEQ-----FEKFYEEKLWFQLSESLTKFFDDAKSTPLRLRLYDNFVSKFYDKINQLS 77 (393)
T ss_dssp HHHHHHHHHHHCSSC--SSCCSSHHH-----HHHHHCCSSCCSCCCTTHHHHCCCSSCCCCHHHHHHHHHHHHHHSCSHH
T ss_pred hhHHHHHHHHHhcCC--HHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHhChhcchHHHHHHHHHHHHHHHhcCHHH
Confidence 457889998886433 444444443 45555778888777766665543
Q ss_pred -----------hcchhHHHHHHHHHHHHcccCCCCchhhh-----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 105 -----------MGEYGRMSKILKELHKSCQREDGTDDQKK-----GSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 105 -----------~~~y~~a~~li~~L~~~l~~~~~~dD~~k-----k~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..+.+++.+.|.++...+...++.....+ ....+-+...-.++|...++.++++..+.++...-
T Consensus 78 lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l 157 (393)
T 4b4t_O 78 VVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTL 157 (393)
T ss_dssp HHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 34556677777777766654322111000 12345566667788889999999999999999877
Q ss_pred ccCC--chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc--cChhhHHHHHHHHHHHHhccCCCchHH
Q 025427 169 SAIP--HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA--GNQRRIQCLKYGFYLHLLFLISIYFLY 238 (253)
Q Consensus 169 ~aI~--~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~--g~~~a~~~LKYlvL~~iL~~s~id~~~ 238 (253)
.... +|++.+.+-+++|.+|..+++|..+|.+++.++.+++.. ++++..++++|.++..++++..+.+|+
T Consensus 158 ~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~ 231 (393)
T 4b4t_O 158 DKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPSTSITLAERQQLAYDLSISALLGDKIYNFG 231 (393)
T ss_dssp HHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTH
T ss_pred hccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHHHcCCCCCChH
Confidence 7764 489999999999999999999999999999999999854 678999999999999999999888876
No 6
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.99 E-value=3.6e-07 Score=77.06 Aligned_cols=216 Identities=10% Similarity=-0.001 Sum_probs=153.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 025427 3 PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA 81 (253)
Q Consensus 3 ~~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~ 81 (253)
|++.++.-.++..++.++...|+++++.+++++.+... ...+ ......+...+-..+....+ .+.-.+...++
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a 109 (338)
T 3ro2_A 36 TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTIGDQLGEAKASGNLGNTLKVLGN-----FDEAIVCCQRH 109 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHccC-----HHHHHHHHHHH
Confidence 44556667888999999999999999999999998887 3322 22223333333333322111 12333344444
Q ss_pred HHHhh---hhhhHHHHhhhHHHHHhhhcc--------------------hhHHHHHHHHHHHHcccCCCCchhhhcchHH
Q 025427 82 LEEAK---NERLWFKTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQREDGTDDQKKGSQLL 138 (253)
Q Consensus 82 i~~a~---~erl~lk~~lkLa~l~l~~~~--------------------y~~a~~li~~L~~~l~~~~~~dD~~kk~~Ll 138 (253)
++-.. +..........++.+|...|+ |++|....++..+.++.. .+ .....
T Consensus 110 l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~---~~---~~~~~ 183 (338)
T 3ro2_A 110 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTAL---GD---RAAQG 183 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHH---TC---HHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---CC---HHHHH
Confidence 44322 222444455599999999999 999999999888877665 33 45567
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
.++..-..+|...+++.++...+.++..+......|...+.+-..-|.++...++|+.|..+|-++.+-+...+++.. .
T Consensus 184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~ 262 (338)
T 3ro2_A 184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV-E 262 (338)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH-H
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhH-H
Confidence 778888899999999999999999999998888788888888888899999999999999999999988777665432 2
Q ss_pred HHHHHHHHHHhcc
Q 025427 219 CLKYGFYLHLLFL 231 (253)
Q Consensus 219 ~LKYlvL~~iL~~ 231 (253)
+--|..++.+...
T Consensus 263 ~~~~~~la~~~~~ 275 (338)
T 3ro2_A 263 AQSCYSLGNTYTL 275 (338)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2224445555443
No 7
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.90 E-value=1.9e-07 Score=78.81 Aligned_cols=195 Identities=18% Similarity=0.100 Sum_probs=138.0
Q ss_pred hHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCC
Q 025427 7 EWGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSAS 65 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~--------------------~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~ 65 (253)
...-.++..++.++...|+ ++++.+++++.+... ...+ ......+...+-..+....+
T Consensus 120 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (338)
T 3ro2_A 120 VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGN 198 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhCC
Confidence 3445688899999999999 899999998888776 3322 22222333333322221111
Q ss_pred cchhHHHHHHHHHHHHHHHhh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHH
Q 025427 66 QNFSLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYA 142 (253)
Q Consensus 66 ~~~~~l~~~y~~~~e~i~~a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~ 142 (253)
.+.-.+...++++.+. +..........++.++...|++++|...+++..+..+.. ++ .....+++.
T Consensus 199 -----~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~ 267 (338)
T 3ro2_A 199 -----FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KD---RAVEAQSCY 267 (338)
T ss_dssp -----HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh---cc---hhHHHHHHH
Confidence 1222333344443322 222334455699999999999999999999998887765 34 456677888
Q ss_pred HHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC
Q 025427 143 IEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 143 lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
.-..+|...+++.++...|.++..+......|...+.+-..=|.++...|+|+.|..+|-+|.+-+.+.||
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~d 338 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhcC
Confidence 88899999999999999999999998888887778888888899999999999999999999998887764
No 8
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.87 E-value=2.1e-06 Score=75.25 Aligned_cols=200 Identities=10% Similarity=0.015 Sum_probs=146.4
Q ss_pred ccchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 025427 3 PEKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA 81 (253)
Q Consensus 3 ~~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~ 81 (253)
|++.+..-.++..++.++...|+++++.+++++.+... ..+. ......+...+-..+....+ .+.-.+.+.++
T Consensus 40 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 113 (406)
T 3sf4_A 40 TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA-RTIGDQLGEAKASGNLGNTLKVLGN-----FDEAIVCCQRH 113 (406)
T ss_dssp CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHH
Confidence 34445556788899999999999999999999988876 3321 12223333333333322111 12333344444
Q ss_pred HHHhh---hhhhHHHHhhhHHHHHhhhcc--------------------hhHHHHHHHHHHHHcccCCCCchhhhcchHH
Q 025427 82 LEEAK---NERLWFKTNLKLCKIWFDMGE--------------------YGRMSKILKELHKSCQREDGTDDQKKGSQLL 138 (253)
Q Consensus 82 i~~a~---~erl~lk~~lkLa~l~l~~~~--------------------y~~a~~li~~L~~~l~~~~~~dD~~kk~~Ll 138 (253)
++-.. +..........++.+|...|+ |++|....++..+..+.. .+ .....
T Consensus 114 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~---~~~~~ 187 (406)
T 3sf4_A 114 LDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL---GD---RAAQG 187 (406)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT---TC---HHHHH
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---cC---cHHHH
Confidence 44332 222344455599999999999 999999999988887776 34 45567
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccCh
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 214 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~ 214 (253)
.++..-..+|...+++.++...|.++..+......|...+.+-..=|.++...++|+.|..+|-+|.+-+...+++
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence 7888888999999999999999999999988888888888888888999999999999999999999877766653
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.85 E-value=6.8e-07 Score=78.34 Aligned_cols=212 Identities=17% Similarity=0.085 Sum_probs=153.5
Q ss_pred HHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCc
Q 025427 8 WGFKALKQTVKLYYRLGK--------------------YKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQ 66 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~--------------------~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~ 66 (253)
..-.++..++.++...|+ ++++.+++.+.+... .... ......+...+-..+....+
T Consensus 125 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~- 202 (406)
T 3sf4_A 125 GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV-TALGDRAAQGRAFGNLGNTHYLLGN- 202 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTB-
T ss_pred chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH-HhccCcHHHHHHHHHHHHHHHHccC-
Confidence 445688899999999999 999999999888877 3332 22223333333333321111
Q ss_pred chhHHHHHHHHHHHHHHHhh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHH
Q 025427 67 NFSLLREFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 143 (253)
Q Consensus 67 ~~~~l~~~y~~~~e~i~~a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~l 143 (253)
.+.-.+...++++-.. +..........++.+|...|++++|...+++..+..+.. ++ ......++..
T Consensus 203 ----~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~ 272 (406)
T 3sf4_A 203 ----FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KD---RAVEAQSCYS 272 (406)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC---cC---chHHHHHHHH
Confidence 1233334444444322 222334455599999999999999999999998887665 33 4556778888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHHHH
Q 025427 144 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKY 222 (253)
Q Consensus 144 E~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~LKY 222 (253)
-..+|...+++.++...|.+|..+......|...+.+-..=|.++...|+|+.|..+|-+|.+-+.+.|+ +....++..
T Consensus 273 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 273 LGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLN 352 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 8899999999999999999999999988887777888888899999999999999999999999988876 455666555
Q ss_pred HHHHHHhcc
Q 025427 223 GFYLHLLFL 231 (253)
Q Consensus 223 lvL~~iL~~ 231 (253)
+..+....+
T Consensus 353 l~~~~~~~g 361 (406)
T 3sf4_A 353 LSDLQMVLG 361 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 554444444
No 10
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.84 E-value=1.7e-06 Score=76.80 Aligned_cols=216 Identities=17% Similarity=0.068 Sum_probs=146.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
++.++.-.++..++.++...|+++++.+++++.+......-.......+...+-..+....+ .+.-.+...++++
T Consensus 80 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 154 (411)
T 4a1s_A 80 EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGR-----FDEAAICCERHLT 154 (411)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHH
Confidence 34445556778888888888888888888888887762211122223333333333322111 1222333333333
Q ss_pred Hhh---hhhhHHHHhhhHHHHHhhhcc-----------------hhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHH
Q 025427 84 EAK---NERLWFKTNLKLCKIWFDMGE-----------------YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI 143 (253)
Q Consensus 84 ~a~---~erl~lk~~lkLa~l~l~~~~-----------------y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~l 143 (253)
-.. +..........++.+|...|+ |++|....++..+..+.. .+ ......++..
T Consensus 155 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~ 228 (411)
T 4a1s_A 155 LARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL---GD---RGAQGRACGN 228 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH---TC---HHHHHHHHHH
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc---CC---HHHHHHHHHH
Confidence 222 223445555699999999999 999999998888776654 23 3456677888
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHH
Q 025427 144 EIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYG 223 (253)
Q Consensus 144 E~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYl 223 (253)
-..+|...+++.++...|.++..+......|...+.+...=|.++...++|+.|..+|-++.+-....|++.. .+--|.
T Consensus 229 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~ 307 (411)
T 4a1s_A 229 LGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREV-EAQSCY 307 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHH-HHHHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH-HHHHHH
Confidence 8899999999999999999999988887777778888888899999999999999999999998877665422 222244
Q ss_pred HHHHHhcc
Q 025427 224 FYLHLLFL 231 (253)
Q Consensus 224 vL~~iL~~ 231 (253)
.|+.+...
T Consensus 308 ~la~~~~~ 315 (411)
T 4a1s_A 308 SLGNTYTL 315 (411)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44554443
No 11
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.83 E-value=1.5e-06 Score=77.26 Aligned_cols=230 Identities=10% Similarity=-0.003 Sum_probs=155.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCC------------cchhHHH
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSAS------------QNFSLLR 72 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~------------~~~~~l~ 72 (253)
....-.++..++.++...|+++++.+++.+.+... .... ..........+-..+....+ ......+
T Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~ 200 (411)
T 4a1s_A 122 RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA-RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALT 200 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHH
Confidence 35566788999999999999999999999999887 3322 12222232222222211000 0000022
Q ss_pred HHHHHHHHHHHHhh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHH
Q 025427 73 EFYQTTLKALEEAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYT 149 (253)
Q Consensus 73 ~~y~~~~e~i~~a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~ 149 (253)
...+...++++-.. +..........++.+|+..|+|++|...+++..+..+.. .+ ......++..-..+|.
T Consensus 201 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~la~~~~ 274 (411)
T 4a1s_A 201 RAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF---GD---RAAERRANSNLGNSHI 274 (411)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc---CC---cHHHHHHHHHHHHHHH
Confidence 23333333333221 122334455589999999999999999999998887664 23 4455677788888999
Q ss_pred hhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccCh-hhHHHHHHHHHHHH
Q 025427 150 ETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYGFYLHL 228 (253)
Q Consensus 150 ~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~-~a~~~LKYlvL~~i 228 (253)
..+++.++...|.++..+......+...+.+-..=|.++...|+|+.|..+|-++.+-..+.+++ ....+ |..|+.+
T Consensus 275 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~ 352 (411)
T 4a1s_A 275 FLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA--CWSLGNA 352 (411)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH--HHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH--HHHHHHH
Confidence 99999999999999999988887788888888888999999999999999999999988877753 33334 4455555
Q ss_pred hccCCCchHHHHHHHH
Q 025427 229 LFLISIYFLYLYFLTR 244 (253)
Q Consensus 229 L~~s~id~~~~~~~~~ 244 (253)
......---++-++.+
T Consensus 353 ~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 353 HSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 5444333333333333
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.75 E-value=9.9e-07 Score=66.54 Aligned_cols=161 Identities=16% Similarity=0.036 Sum_probs=126.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
+....-.++..++.++...|+++++.+++++.+... +..+ + .
T Consensus 4 d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~-------------------~--~---------------- 45 (164)
T 3ro3_A 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFG-------------------D--K---------------- 45 (164)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHT-------------------C--H----------------
T ss_pred cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhC-------------------C--c----------------
Confidence 345667789999999999999999999999988877 3211 1 0
Q ss_pred hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 85 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 85 a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
.........++.++...|+|++|....++..+..+.. ++ ......++..-..+|...+++.++...+.++
T Consensus 46 ----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 46 ----AAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL---KD---RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp ----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CC---cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0001122357888999999999999999988887765 33 3445677777788999999999999999999
Q ss_pred HhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC
Q 025427 165 LAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 165 ~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
..+......|...+.+...=|.++...++|+.|..+|-+|.+-+.+.|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~d 164 (164)
T 3ro3_A 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhCC
Confidence 9988888777777888888889999999999999999999887766553
No 13
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.68 E-value=4.1e-06 Score=74.98 Aligned_cols=207 Identities=11% Similarity=-0.003 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh---
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN--- 87 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~--- 87 (253)
.+...+..++..|+++++.+.+++.+... ..++ ....+.+...+-..+....+ . ..-.+...++++-.+.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~y~~~~~--~---~~A~~~~~~al~~~~~~~~ 176 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKEL-PFVSDDIEKAEFHFKVAEAYYHMKQ--T---HVSMYHILQALDIYQNHPL 176 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTG-GGCCCHHHHHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-hhCCChHHHHHHHHHHHHHHHHcCC--c---HHHHHHHHHHHHHHHhCCC
Confidence 34456778899999999999999999988 4433 23344444444443332221 1 2333444444443321
Q ss_pred -hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 88 -ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 88 -erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
..........++.+|.+.|+|++|.+..++..+..++. .| ......++.-=..+|..++++.++...|.+|..
T Consensus 177 ~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 177 YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI---QN---DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 12334455599999999999999999999998887766 34 345666777778889999999999999999999
Q ss_pred hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCC
Q 025427 167 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLIS 233 (253)
Q Consensus 167 ~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~ 233 (253)
+.....+|.. +..-..=|.++...|+|+.|..+|-+|.+-..+.|++.-... +.+|..+.....
T Consensus 251 ~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~ly~~~~ 314 (378)
T 3q15_A 251 VSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAVYKETV 314 (378)
T ss_dssp HHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHHHSSSC
T ss_pred HHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhCCC
Confidence 8887777887 777777789999999999999999999999888887765553 566666655543
No 14
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.66 E-value=8.4e-06 Score=68.63 Aligned_cols=194 Identities=13% Similarity=0.137 Sum_probs=136.6
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh---hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT---RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA 81 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~---ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~ 81 (253)
.......++..++..+...|+++++.+++++.+... .... ......+...+-..+....+ .+.-.+...++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~g~-----~~~A~~~~~~a 95 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDL-EKTSGHDHPDVATMLNILALVYRDQNK-----YKDAANLLNDA 95 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHCSSSHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHcCCCCHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHH
Confidence 344567899999999999999999999999999987 3322 23334444444443332211 12333444444
Q ss_pred HHHh-----hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHH
Q 025427 82 LEEA-----KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 156 (253)
Q Consensus 82 i~~a-----~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~k 156 (253)
++.. .+..........++.+|...|+|++|...+++..+..++..+. + ......++..-..+|...+++.+
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~-~---~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 96 LAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-D---HPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-T---CHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC-C---ChHHHHHHHHHHHHHHHcCCHHH
Confidence 4433 1223444555689999999999999999999988886553221 2 34456777778889999999999
Q ss_pred HHHHHHHHHhhhccC--CchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 157 LKQLYQKALAIKSAI--PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 157 lk~~y~~a~~~~~aI--~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
+...|.++..+.... ..+...+.+...=|.++...|+|+.|..+|-++.+-.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 999999999986655 2233444555666888999999999999999999754
No 15
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.64 E-value=7.1e-06 Score=73.26 Aligned_cols=203 Identities=9% Similarity=0.009 Sum_probs=146.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh---h-hhh
Q 025427 16 TVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK---N-ERL 90 (253)
Q Consensus 16 l~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~---~-erl 90 (253)
.+..+...|+++++.+++++.+... ..++ ....+.+...+-..+....+ . +.-.+...++++-.+ + ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~~~--~---~~A~~~~~~al~~~~~~~~~~~~ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKL-IFVKDRIEKAEFFFKMSESYYYMKQ--T---YFSMDYARQAYEIYKEHEAYNIR 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTG-GGCCCHHHHHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHHHHTCSTTHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHH-hhCCCHHHHHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHHHHhCccchHH
Confidence 7889999999999999999999987 4333 22233444444333332111 1 123333444443222 1 222
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.......++.+|...|+|++|....++..+..++. +| ......++.-=-.+|..++++.++...|.+|..+...
T Consensus 183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE---KQ---PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc---CC---hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 33445589999999999999999999999887776 34 4556677777788899999999999999999999888
Q ss_pred CCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCC
Q 025427 171 IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLIS 233 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~ 233 (253)
... |.. +..-..=|.++...|+|+.|..+|-+|.+-..+.|+|.-... +..|+.+.....
T Consensus 257 ~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~~~~~ 317 (383)
T 3ulq_A 257 SNILPSL-PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLYLSGP 317 (383)
T ss_dssp TTCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHTSSC
T ss_pred hccchhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhCCC
Confidence 777 665 566666688899999999999999999998888888766555 556777766544
No 16
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.62 E-value=2.5e-05 Score=69.70 Aligned_cols=221 Identities=9% Similarity=-0.045 Sum_probs=146.0
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~--ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
..+.-.++..++.++...|+++++.+++.+.+... +..+ ......+.+.+=..+....+ .++-.+...++++
T Consensus 139 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~ 212 (383)
T 3ulq_A 139 RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY-KEHEAYNIRLLQCHSLFATNFLDLKQ-----YEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTCSTTHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCccchHHHHHHHHHHHHHHHHhcC-----HHHHHHHHHHHHH
Confidence 34466789999999999999999999999999998 5443 23333444444333332111 1233334444444
Q ss_pred Hhh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHH
Q 025427 84 EAK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQL 160 (253)
Q Consensus 84 ~a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~ 160 (253)
-++ +..........++.+|...|+|++|...+++..+..+.. .+ ......++..-..+|..++++.++...
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~ 286 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES---NI---LPSLPQAYFLITQIHYKLGKIDKAHEY 286 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TC---GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---cc---chhHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 322 233445556689999999999999999999998887665 22 244578888889999999999999999
Q ss_pred HHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHHHHHHHHHHhccCCCchHHH
Q 025427 161 YQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCLKYGFYLHLLFLISIYFLYL 239 (253)
Q Consensus 161 y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~LKYlvL~~iL~~s~id~~~~ 239 (253)
|.+|..+......|...+.+.. =|.++...+++ ..+-+|++-+...++ |....+ |..|+.+......-.-++
T Consensus 287 ~~~al~~~~~~~~~~~~~~~~~-l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~--~~~la~~y~~~g~~~~A~ 359 (383)
T 3ulq_A 287 HSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDF--AIDVAKYYHERKNFQKAS 359 (383)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH-HHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-HHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHH--HHHHHHHHHHCCCHHHHH
Confidence 9999999988888887777655 45567777774 233333333344443 222223 445666665554444444
Q ss_pred HHHHHH
Q 025427 240 YFLTRI 245 (253)
Q Consensus 240 ~~~~~~ 245 (253)
.++.+.
T Consensus 360 ~~~~~a 365 (383)
T 3ulq_A 360 AYFLKV 365 (383)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 17
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.61 E-value=3.9e-06 Score=72.81 Aligned_cols=200 Identities=12% Similarity=0.043 Sum_probs=145.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhh-hHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 85 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~-~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a 85 (253)
......+.+.+..++..|+++++.+.+++.+... +..+... .....+.+-.......+ .+...+...++++..
T Consensus 72 ~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVD-----YEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSC-----HHHHHHHHHHHHHTC
T ss_pred chhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccC-----HHHHHHHHHHHHHHh
Confidence 3455677778889999999999999999988754 3322211 12223334444332111 123444555555533
Q ss_pred hhhh-hH--HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 86 KNER-LW--FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 86 ~~er-l~--lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
.... .+ ...-..++.+|...|+|++|....++..+..++.++ + ......++.--..+|..++++.++...+.
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~--~---~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD--N---EEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC--C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc--c---hhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3222 22 334459999999999999999999999988776532 3 55677888888999999999999999999
Q ss_pred HHHhhhccCCchhHHHHHHhhccccccccc-cHHHHHHHHHHHhcccccccChhhH
Q 025427 163 KALAIKSAIPHPRIMGIIRECGGKMHMAER-QWADAATDFFEAFKNYDEAGNQRRI 217 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ek-dy~tA~s~F~EAFe~yde~g~~~a~ 217 (253)
+|..+......+...|.+-..=|..+...| +|++|..+|-+|.+-+...|+++-.
T Consensus 221 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~~~ 276 (293)
T 3u3w_A 221 KAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTGGG
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999998877776677888888889998888 6899999999999999988886533
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.59 E-value=1.1e-05 Score=67.84 Aligned_cols=192 Identities=15% Similarity=0.109 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh---hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV---TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 82 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v---~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i 82 (253)
......++..++.++...|+++++.+++++.+... ... .......+...+-..+....+ .+.-.+...+++
T Consensus 65 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~a~ 138 (311)
T 3nf1_A 65 HPDVATMLNILALVYRDQNKYKDAANLLNDALAIR-EKTLGKDHPAVAATLNNLAVLYGKRGK-----YKEAEPLCKRAL 138 (311)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHHhCCCChHHHHHHHHHHHHHHHcCc-----HHHHHHHHHHHH
Confidence 45667788999999999999999999999999887 332 112234444444444443222 223334444444
Q ss_pred HHh-----hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHH
Q 025427 83 EEA-----KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 157 (253)
Q Consensus 83 ~~a-----~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~kl 157 (253)
+.. .+..........++.++...|++++|...+++..+.+++..+. + ......++..-..+|...+++.++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~---~~~~~~~~~~la~~~~~~g~~~~A 214 (311)
T 3nf1_A 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP-D---DPNVAKTKNNLASCYLKQGKFKQA 214 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT-T---CHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHcCCHHHH
Confidence 433 1223445555689999999999999999999999987765432 2 344567777888999999999999
Q ss_pred HHHHHHHHhhhcc-------------------------------------------CCchhHHHHHHhhccccccccccH
Q 025427 158 KQLYQKALAIKSA-------------------------------------------IPHPRIMGIIRECGGKMHMAERQW 194 (253)
Q Consensus 158 k~~y~~a~~~~~a-------------------------------------------I~~P~i~g~I~e~~Gkl~~~ekdy 194 (253)
...|.++..+... +..+.-.+.+-..=|.++...|+|
T Consensus 215 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 215 ETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCH
Confidence 9999999975322 112122344445557778888999
Q ss_pred HHHHHHHHHHhcc
Q 025427 195 ADAATDFFEAFKN 207 (253)
Q Consensus 195 ~tA~s~F~EAFe~ 207 (253)
++|..+|-+|.+-
T Consensus 295 ~~A~~~~~~al~l 307 (311)
T 3nf1_A 295 EAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999888887763
No 19
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.59 E-value=1.3e-05 Score=66.13 Aligned_cols=191 Identities=14% Similarity=0.060 Sum_probs=130.1
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh---hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV---TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v---~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
.....++..++.++...|+++++.+++.+.+... ... .......+...+-..+....+ .+.-.+...++++
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~ 113 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIR-EKTLGKDHPAVAATLNNLAVLYGKRGK-----YKEAEPLCKRALE 113 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHHTTTC-----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhcc-----HHHHHHHHHHHHH
Confidence 4567789999999999999999999999999887 332 112334445555444443222 1233344444444
Q ss_pred Hhh-----hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHH
Q 025427 84 EAK-----NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLK 158 (253)
Q Consensus 84 ~a~-----~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk 158 (253)
..+ +..........++.+|...|+|++|...+++..+.++...+. + ......++..-..+|...+++.++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~~~~~la~~~~~~g~~~~A~ 189 (283)
T 3edt_B 114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGP-D---DPNVAKTKNNLASCYLKQGKYQDAE 189 (283)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCT-T---CHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC-C---CHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 321 123445556689999999999999999999999887665432 2 3445677777889999999999999
Q ss_pred HHHHHHHhhhccC-------------------------------------------CchhHHHHHHhhccccccccccHH
Q 025427 159 QLYQKALAIKSAI-------------------------------------------PHPRIMGIIRECGGKMHMAERQWA 195 (253)
Q Consensus 159 ~~y~~a~~~~~aI-------------------------------------------~~P~i~g~I~e~~Gkl~~~ekdy~ 195 (253)
..|.++..+.... ..+.-.+..-..=|.++...|+|+
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 269 (283)
T 3edt_B 190 TLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLE 269 (283)
T ss_dssp HHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999863220 111223334445567777888888
Q ss_pred HHHHHHHHHhcc
Q 025427 196 DAATDFFEAFKN 207 (253)
Q Consensus 196 tA~s~F~EAFe~ 207 (253)
.|..+|-+|.+.
T Consensus 270 ~A~~~~~~al~~ 281 (283)
T 3edt_B 270 AAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 888888777654
No 20
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=7.9e-06 Score=65.13 Aligned_cols=119 Identities=10% Similarity=0.041 Sum_probs=102.2
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
.....++.++...|+|++|...+++..+.++..+ |+ ......++..-..+|..++++.++...+.++..+.....
T Consensus 67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 141 (203)
T 3gw4_A 67 RALHQVGMVERMAGNWDAARRCFLEERELLASLP--ED---PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD 141 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--cc---HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc
Confidence 3444789999999999999999999999887652 23 335567777778899999999999999999999988888
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhh
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR 216 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a 216 (253)
.|...+.....-|.++...|||++|..+|-+|.+-+.+.|++..
T Consensus 142 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 185 (203)
T 3gw4_A 142 DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEA 185 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 88888888888899999999999999999999999999898643
No 21
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.55 E-value=2.8e-08 Score=85.60 Aligned_cols=62 Identities=15% Similarity=0.144 Sum_probs=54.7
Q ss_pred HHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccCCCchHHHH
Q 025427 178 GIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLISIYFLYLY 240 (253)
Q Consensus 178 g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s~id~~~~~ 240 (253)
..=+=--|+++|.++||.+|+.+|.+||+++++.+..++.++|||+|.++|++|. +.++.++
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~-iP~~~ll 75 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGH-MPTVELL 75 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTC-EECHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCC-CCCHHHh
Confidence 3344556999999999999999999999999998889999999999999999997 7766653
No 22
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=98.52 E-value=2.1e-06 Score=82.43 Aligned_cols=219 Identities=16% Similarity=0.081 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHHHHHhcCCCC-cchhHH----HHHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNIMDFVSGSAS-QNFSLL----REFYQTTLK 80 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k---a~~~K~i~~ild~~s~~~~-~~~~~l----~~~y~~~~e 80 (253)
.-++|..++.-..-.+++..+-...+..+.|+ .+|.- -.+=+.+..++..++.+-. .+..++ ..++.++.-
T Consensus 41 ~~~~l~~~ve~~~~~~~w~~f~~~v~~yl~~~-rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~ 119 (455)
T 3t5v_B 41 DDKQLETFVEQHPAMPNDTRFKIMCTSFLNYA-RDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEF 119 (455)
T ss_dssp CHHHHHHHHHHSTTCCSCHHHHHHHHHHHHHH-HHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH-HhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHH
Confidence 34555555554333377888888888888888 44422 2234455666555554311 122333 333333333
Q ss_pred HHHHhhh-hh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCc--h--hhhcchHHHHHHHHHHHHHhhcCH
Q 025427 81 ALEEAKN-ER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD--D--QKKGSQLLEVYAIEIQMYTETKNN 154 (253)
Q Consensus 81 ~i~~a~~-er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~d--D--~~kk~~LlEv~~lE~~~y~~~~n~ 154 (253)
...+|.. ++ .-.... -.....++|..+|...-..|...-+.+ + +.||.-++=+...-.++|++++|.
T Consensus 120 l~~~a~~lD~~~~~~~~-------~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~ 192 (455)
T 3t5v_B 120 IINLAGKLDSFHLQLHT-------RSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESP 192 (455)
T ss_dssp HHHHHHHHHHTHHHHTC-------CTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHhhhhHhhhcc-------cchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCH
Confidence 3334332 11 211100 124456777888888888887643221 1 347888888888888999999999
Q ss_pred HHHHHHHHHHHhhhccCCc----hh-HHHHHHhhccccccccccHHHHHHHHHHHhcc--ccccc----ChhhHHHHHHH
Q 025427 155 KKLKQLYQKALAIKSAIPH----PR-IMGIIRECGGKMHMAERQWADAATDFFEAFKN--YDEAG----NQRRIQCLKYG 223 (253)
Q Consensus 155 ~klk~~y~~a~~~~~aI~~----P~-i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~--yde~g----~~~a~~~LKYl 223 (253)
.-.+.+....... +-+|+ |+ -+..=.=..|++++.+.||.+|+.+|.+||++ .+++| ..++.++|||+
T Consensus 193 ~lckni~k~i~~~-~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyL 271 (455)
T 3t5v_B 193 QLCSNIFKNFQPK-SMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYM 271 (455)
T ss_dssp TTHHHHHHTHHHH-CCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccC-CCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHH
Confidence 8888888665443 33322 44 67788899999999999999999999999998 44444 35788999999
Q ss_pred HHHHHhccCCCch
Q 025427 224 FYLHLLFLISIYF 236 (253)
Q Consensus 224 vL~~iL~~s~id~ 236 (253)
|.++|++|.-.++
T Consensus 272 Ipv~LLlG~~P~~ 284 (455)
T 3t5v_B 272 IPTGLILGKMVKW 284 (455)
T ss_dssp HHHHHHTTCCBCH
T ss_pred HHHHHHcCCCCCH
Confidence 9999999875554
No 23
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=4.3e-05 Score=66.99 Aligned_cols=184 Identities=7% Similarity=-0.013 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCC--CcchhHHHHHHHHHHHHHHHhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSA--SQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~--~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
-..+.+++.+|...|+++++.+.|.+.+... +... ........+++-..+.... +.-.+. |+-.++......
T Consensus 36 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~----~~~Al~l~~~~g 110 (307)
T 2ifu_A 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH-ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY----IEKASVMYVENG 110 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHH----HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHH----HHHHHHHHHHcC
Confidence 4567788899999999999999999998887 4432 2344555555554443221 111222 222222211122
Q ss_pred hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 87 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 87 ~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
+.........+++.+|.. |+|++|....++..+..+.. ++ .....+++.---.+|..++++.++...|.++..
T Consensus 111 ~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 111 TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE---ER---LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC---CC---hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222333445589999999 99999999999888876654 23 344566676677889999999999999999999
Q ss_pred hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHh
Q 025427 167 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAF 205 (253)
Q Consensus 167 ~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAF 205 (253)
+......+...+..-..-|.++...+||..|..+|-++.
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 877666555666666777888888999999999999998
No 24
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.47 E-value=1.1e-05 Score=69.89 Aligned_cols=196 Identities=12% Similarity=0.059 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhh-hhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRN-YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka-~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
...+...+..+...|+++++.+.+.+.+... +..+.. ........+-..... .+ + .+.-.+...++++.+...
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-~---~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLK-KV-D---YEYCILELKKLLNQQLTG 148 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHT-SS-C---HHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhc-CC-C---HHHHHHHHHHHHHHHhcC
Confidence 4566677889999999999999999887765 322111 111112222222222 11 1 123334444455433322
Q ss_pred -hhH--HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 89 -RLW--FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 89 -rl~--lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
..| ......++.+|...|+|++|....++..+..+..+ ++ ......++.--..+|..++++.++...|.+|.
T Consensus 149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~--~~---~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH--DN---EEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcC--cc---ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 233 33444899999999999999999999987766553 22 22334677888889999999999999999999
Q ss_pred hhhccCCchhHHHHHHhhccccccccccHHHH-HHHHHHHhcccccccChhh
Q 025427 166 AIKSAIPHPRIMGIIRECGGKMHMAERQWADA-ATDFFEAFKNYDEAGNQRR 216 (253)
Q Consensus 166 ~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA-~s~F~EAFe~yde~g~~~a 216 (253)
.+......+...+.+-..-|.++...|++++| ..+|-+|.+-+...|+++-
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 98876666777888888889999999999999 7788888887777777644
No 25
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.44 E-value=0.00012 Score=65.44 Aligned_cols=181 Identities=13% Similarity=0.017 Sum_probs=126.9
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~--ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
...-.++..++.+|...|+++++.+++.+.+... +..+ ......+.+.+=..+....+ . ++-.+...++++-
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~y~~~~~--~---~~A~~~~~~al~~ 211 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGNYDDFKH--Y---DKALPHLEAALEL 211 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHHHHHhCC--H---HHHHHHHHHHHHH
Confidence 4556788999999999999999999999999988 5432 22344444444443332211 1 2333344444443
Q ss_pred hh---hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 85 AK---NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 85 a~---~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
++ +..........++.+|...|+|++|...+++..+..+.. .+ .. ...++..-..+|..++++.++...+
T Consensus 212 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~---~~-~~~~~~~la~~~~~~g~~~~A~~~~ 284 (378)
T 3q15_A 212 AMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VP---DL-LPKVLFGLSWTLCKAGQTQKAFQFI 284 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CG---GG-HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CC---hh-HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 33 333445556699999999999999999999988876553 22 22 3778888889999999999999999
Q ss_pred HHHHhhhccCCchhHHHHHHhhcccccccccc---HHHHHHHH
Q 025427 162 QKALAIKSAIPHPRIMGIIRECGGKMHMAERQ---WADAATDF 201 (253)
Q Consensus 162 ~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekd---y~tA~s~F 201 (253)
.+|..+......|.....+...+ .++...++ +..|..+|
T Consensus 285 ~~al~~~~~~~~~~~~~~~~~l~-~ly~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 285 EEGLDHITARSHKFYKELFLFLQ-AVYKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHHHHCCTTCCSCHHHHHHHHH-HHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-HHHhCCCcHHHHHHHHHHH
Confidence 99999998888877777665544 44566666 55555544
No 26
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.31 E-value=0.00025 Score=61.61 Aligned_cols=188 Identities=8% Similarity=-0.004 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh-hhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT-RNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN- 87 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~-ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~- 87 (253)
-..+.+.+.+|...|+++++++.|.+.+... +... ....+.+.+++-..+....+ .+.-.+...++++-...
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~g~-----~~~A~~~~~~Al~l~~~~ 110 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQ-KKAGNEDEAGNTYVEAYKCFKSGGN-----SVNAVDSLENAIQIFTHR 110 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHc
Confidence 3468888999999999999999999999887 4432 22334555555444432211 12223333333332221
Q ss_pred hh--hHHHHhhhHHHHHhhh-cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 88 ER--LWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 88 er--l~lk~~lkLa~l~l~~-~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
.+ .--..-.+++.+|... |+|++|....++..+..+.. ++ .....+++.-=..+|..++++.++...|.++
T Consensus 111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD---QS---VALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC---CC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 11 1123334899999996 99999999999888876543 22 2344566666678899999999999999999
Q ss_pred HhhhccCCch-hHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 165 LAIKSAIPHP-RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 165 ~~~~~aI~~P-~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
..+....+.+ ......-..-|.++...+|+..|..+|-++.+-..
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 230 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDP 230 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9887655542 23344445568888899999999999988877433
No 27
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.27 E-value=3.1e-05 Score=58.10 Aligned_cols=131 Identities=8% Similarity=-0.016 Sum_probs=106.8
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
-+....++.++...|+|++|....++..+..++. .| ......++..-..+|...+++.++...+.++.......
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF---GD---KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH---TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh---CC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 3445589999999999999999999998887764 33 44566788888999999999999999999999999888
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccCh-hhHHHHHHHHHHHHhc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ-RRIQCLKYGFYLHLLF 230 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~-~a~~~LKYlvL~~iL~ 230 (253)
..|...+.+-..=|.++...++|++|..+|-+|.+-..+.+++ ....+ |..|+.+..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~--~~~la~~~~ 140 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA--CWSLGNAYT 140 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHH--HHHHHHHHH
Confidence 8888888888888999999999999999999999988777764 33333 444555443
No 28
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.17 E-value=0.00016 Score=57.42 Aligned_cols=132 Identities=10% Similarity=0.052 Sum_probs=108.0
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.......++.++...|+|++|....++..+.++.. ++ ......++..-..+|...+++.++...+.+|..+...
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 98 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS---GD---HTAEHRALHQVGMVERMAGNWDAARRCFLEERELLAS 98 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT---CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc---CC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999999988776 34 4556778888889999999999999999999999888
Q ss_pred CC-chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhh-HHHHHHHHHHHHhc
Q 025427 171 IP-HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRR-IQCLKYGFYLHLLF 230 (253)
Q Consensus 171 I~-~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a-~~~LKYlvL~~iL~ 230 (253)
.+ .|...+.+...=|.++...++|++|..+|-+|.+-....|++.- ..+ |..|+.+..
T Consensus 99 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~la~~~~ 158 (203)
T 3gw4_A 99 LPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA--FRGLGDLAQ 158 (203)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHH
T ss_pred cCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH--HHHHHHHHH
Confidence 88 58788888888899999999999999999999998877776532 233 444454443
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.16 E-value=0.00029 Score=57.94 Aligned_cols=181 Identities=13% Similarity=0.093 Sum_probs=123.6
Q ss_pred HHhCCHHHHHHHHHHHHHHhhhhh--hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh-----hhhhhHHH
Q 025427 21 YRLGKYKEMMDAYREMLTYIKSAV--TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-----KNERLWFK 93 (253)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~~~~v--~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a-----~~erl~lk 93 (253)
...|+++++.+++++.+..++... .......+...+-..+....+ .+.-.+...++++.+ .+......
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-----YKEAAHLLNDALAIREKTLGKDHPAVAA 86 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc-----HHHHHHHHHHHHHHHHHHcCCcchHHHH
Confidence 456899999999999999883322 112334444444443332111 123334444444433 22234455
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC--
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-- 171 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI-- 171 (253)
....++.+|...|+|++|...+++..+..++..+. + .....+++..-..+|..++++.++...|.++..+...+
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 162 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK-F---HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLG 162 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT-T---CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC-C---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 55699999999999999999999998887665332 2 34567788888899999999999999999999885443
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
+.+.-.+.+...=|.++...++|+.|..+|-++.+-..+
T Consensus 163 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 163 PDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222334455555678899999999999999999986443
No 30
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.15 E-value=0.00069 Score=59.58 Aligned_cols=199 Identities=7% Similarity=-0.070 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
...|.-.+.-..+.++...|+++++.+++++.+... +.-.......+...+-..+.. .+ + .+.-.+...++++-
T Consensus 9 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~-~g-~---~~~A~~~~~~al~~ 82 (373)
T 1hz4_A 9 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHC-KG-E---LTRSLALMQQTEQM 82 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHH-HT-C---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHh-cC-c---HHHHHHHHHHHHHH
Confidence 455666777888899999999999999999998876 432111111122222111111 11 1 12223344444443
Q ss_pred hhhhh-hH--HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 85 AKNER-LW--FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 85 a~~er-l~--lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
+.... .+ ......++.++...|+|++|....++..+..+..++.+ ......++..-..+|...+++.++...+
T Consensus 83 ~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~ 158 (373)
T 1hz4_A 83 ARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ----LPMHEFLVRIRAQLLWAWARLDEAEASA 158 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT----STHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc----CcHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 33222 22 33345899999999999999999999998876653211 1234455666678889999999999999
Q ss_pred HHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccCh
Q 025427 162 QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ 214 (253)
Q Consensus 162 ~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~ 214 (253)
.++..+.....+|. .+..-..-|.++...||++.|..++-++.+-..+.+.+
T Consensus 159 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 159 RSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 99998877655544 33445556888999999999999999988765555544
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=98.13 E-value=0.00068 Score=55.17 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=78.6
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++.+++..|+|++|...+++..+.-+. + .+++..-..+|...+++.++...+..+...... +|
T Consensus 142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~ 207 (258)
T 3uq3_A 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-----D-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FV 207 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCcc-----c-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HH
Confidence 347899999999999999999888876221 1 256666778888999999999999999876422 13
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC-hhhHHHH
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN-QRRIQCL 220 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~-~~a~~~L 220 (253)
. .-..=|..+...|+|+.|..+|-++.+-..+.++ |.-..+.
T Consensus 208 ~----~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~ 250 (258)
T 3uq3_A 208 R----AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREID 250 (258)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHH
T ss_pred H----HHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHH
Confidence 2 2223366778889999999999999887755443 4444443
No 32
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=0.00085 Score=59.85 Aligned_cols=207 Identities=12% Similarity=-0.019 Sum_probs=142.8
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHhhhhh------------hhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 025427 15 QTVKLYYRLGKYKEMMDAYREMLTYIKSAV------------TRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 82 (253)
Q Consensus 15 ql~kl~~~~~~~~~~~~~~~~ll~~~~~~v------------~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i 82 (253)
+-++-+++.|+|+++.+.|.+++... +.- ....-++++.++...+....+ .+-....|...++..
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKD-SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--KDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSC-CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHTHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC-cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHH
Confidence 34667789999999999999998765 321 123456677777776654222 222222233322222
Q ss_pred HHhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 83 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 83 ~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
...+....---..-.++.++...|++++|..+.++.....++.. + ...-..++.--.++|...+++.++...+.
T Consensus 86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~ 159 (434)
T 4b4t_Q 86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK---R---VFLKHSLSIKLATLHYQKKQYKDSLALIN 159 (434)
T ss_dssp HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS---C---CSSHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC---c---cHHHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 21111111111122456677788999999999999988877652 2 33345667777899999999999999999
Q ss_pred HHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhc
Q 025427 163 KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLF 230 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~ 230 (253)
.+...............+-..-|.++..-|||.+|...+-.|-+.....++|...+..-|..+..+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (434)
T 4b4t_Q 160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHC 227 (434)
T ss_dssp HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHH
Confidence 99988777766555667777778999999999999999999988877777787777766666666544
No 33
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=98.02 E-value=0.00038 Score=58.85 Aligned_cols=103 Identities=12% Similarity=0.070 Sum_probs=78.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.++...|++++|...+++..+..+..++... .....+++..-..+|...+++.++...|.++......- |.
T Consensus 197 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~--~~ 271 (330)
T 3hym_B 197 HEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT---VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN--AS 271 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT---TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--SH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc---ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc--hH
Confidence 47899999999999999999999988766533222 23335677777888999999999999999999875332 22
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. -..=|.++...++|+.|..+|-++.+-
T Consensus 272 ~----~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 272 T----YSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp H----HHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred H----HHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 2 222366778889999999999988874
No 34
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=98.00 E-value=0.00043 Score=54.66 Aligned_cols=164 Identities=13% Similarity=0.063 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
.+.+++.++.++|+++++.+.|++.+..- |.-+.+.. .+-..+....+ .+...+....++....+.
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~-----~la~~~~~~~~-----~~~a~~~~~~~~~~~~~~--- 72 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLL-----KLGKTYMDIGL-----PNDAIESLKKFVVLDTTS--- 72 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH-----HHHHHHHHTTC-----HHHHHHHHHHHHHHCCCC---
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHHCCC-----HHHHHHHHHHHHhcCchh---
Confidence 45689999999999999999999999886 65443332 22222221111 122233333333322222
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
......++..+...+++++|.....+..+.-+. + .+++..-..+|..++++.++...|.++..+...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~- 139 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTV-----Y-------ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG- 139 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-----c-------hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-
Confidence 222346788999999999999988888776322 1 245556678899999999999999999887432
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|. +-..=|.++...|+|+.|..+|-+|.+-
T Consensus 140 -~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 140 -FIR----AYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -hhh----HHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 132 2233477788999999999999999874
No 35
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=98.00 E-value=0.00079 Score=57.28 Aligned_cols=109 Identities=8% Similarity=0.097 Sum_probs=82.9
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
.+.++.+++..|++++|...+++..+..+ ++ .....+++..-..+|...+++.++...|.++...... +|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 306 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEP-----SV---AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NV 306 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----SS---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----Cc---hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cH
Confidence 44779999999999999999999888742 23 4556677888889999999999999999999886211 23
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHH
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQC 219 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~ 219 (253)
. +-..=|.++...|+|+.|..+|-++.+-. .+++.....
T Consensus 307 ~----~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~ 345 (359)
T 3ieg_A 307 N----ALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIREG 345 (359)
T ss_dssp H----HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHH
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHHHH
Confidence 2 33344677888999999999999999854 244444433
No 36
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.99 E-value=0.00081 Score=58.18 Aligned_cols=124 Identities=12% Similarity=0.056 Sum_probs=87.7
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++.+|...|+|++|...+++..+.-+ ++ .+++..-..+|...+++.++...|.++..+... +|
T Consensus 220 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~ 285 (368)
T 1fch_A 220 QCGLGVLFNLSGEYDKAVDCFTAALSVRP-----ND-------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YI 285 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH
Confidence 34789999999999999999998887621 11 356667778889999999999999999886422 12
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhcccccccCh------hhHHHHHHHHHHHHhccCCCch
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQ------RRIQCLKYGFYLHLLFLISIYF 236 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~------~a~~~LKYlvL~~iL~~s~id~ 236 (253)
.....=|.++...|+|+.|..+|-++.+-..+.++| ....+...+..+....+....-
T Consensus 286 ----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 286 ----RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp ----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred ----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 223344677888999999999999998866544322 2245555555555555554443
No 37
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.95 E-value=0.00022 Score=61.66 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=113.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh-hhhhhH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNERLW 91 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a-~~erl~ 91 (253)
+..++.++...|+++++++++++.+....+.-.......+.+++-..+....+ .+--...|+-+++..+.. .+....
T Consensus 118 ~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--~~~A~~~~~~al~~~~~~~~~~~~~ 195 (293)
T 3u3w_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--LKKGIDLFEQILKQLEALHDNEEFD 195 (293)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhcccchhHH
Confidence 44588888889999999999999998651211211223345555444432211 211122333333333322 233466
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHhhhcc
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN-NKKLKQLYQKALAIKSA 170 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n-~~klk~~y~~a~~~~~a 170 (253)
...-..++.+|...|+|++|...+++..+.+++. ++ ...+.+++..--.+|..+++ ..++...|.+|..+...
T Consensus 196 ~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~---~~---~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHc---Cc---HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 6666799999999999999999999999887765 34 56678899999999999995 69999999999999988
Q ss_pred CCchhHHHHHHhhcc
Q 025427 171 IPHPRIMGIIRECGG 185 (253)
Q Consensus 171 I~~P~i~g~I~e~~G 185 (253)
+-.+.....+..-+|
T Consensus 270 ~~~~~~~~~l~~~~~ 284 (293)
T 3u3w_A 270 LEMHAYKEALVNKIS 284 (293)
T ss_dssp TTCTGGGGGGTTC--
T ss_pred hCCHHHHHHHHHHHH
Confidence 887777776665554
No 38
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.93 E-value=0.0021 Score=55.65 Aligned_cols=155 Identities=10% Similarity=0.014 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh-hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k-a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
.-.++.+++.+|.+.|++++++++|++.+... +..+. .......+++-..+....+ + .++-.+...++++....
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-~~~g~~~~~a~~~~~lg~~~~~~lg-~---~~~A~~~~~~Al~~~~~ 150 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF-THRGQFRRGANFKFELGEILENDLH-D---YAKAIDCYELAGEWYAQ 150 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTC-C---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhc-C---HHHHHHHHHHHHHHHHh
Confidence 35788999999999999999999999999988 55432 2234455555544432101 1 23444555566665443
Q ss_pred h--hhH-HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 88 E--RLW-FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 88 e--rl~-lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
. ..+ -....+++.+|...|+|++|....++..+..... .+ .....-+.+.-=..+|..++++.++...|.++
T Consensus 151 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN---RL--SQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC---TT--TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred CCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcC---Cc--ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 222 3445599999999999999999999888775432 11 01122333444456778899999999999999
Q ss_pred HhhhccCCc
Q 025427 165 LAIKSAIPH 173 (253)
Q Consensus 165 ~~~~~aI~~ 173 (253)
..+....+.
T Consensus 226 l~l~p~~~~ 234 (292)
T 1qqe_A 226 QSEDPNFAD 234 (292)
T ss_dssp GCC------
T ss_pred HhhCCCCCC
Confidence 887665544
No 39
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=97.93 E-value=0.00084 Score=54.96 Aligned_cols=140 Identities=16% Similarity=0.086 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhh-hhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKS-AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~-~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
.++.+.+..+...|+++++.+.+++.+..- + .-+.... .+-..+.. .+ + .+.-.+.+.++++-..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~-----~~~~~~~~-~~-~---~~~A~~~~~~al~~~p--- 73 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAY-----NCGVCADN-IK-K---YKEAADYFDIAIKKNY--- 73 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHH-----HHHHHHHH-TT-C---HHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHH-----HHHHHHHH-hh-c---HHHHHHHHHHHHHhCc---
Confidence 578899999999999999999999999887 4 2221111 11111111 11 1 1233334444443222
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
-.......++.+|...|+|++|...+++..+.-+. +..-...+.+++..--.++..++++.++...|.+|..+..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-----NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 23334457999999999999999999988876322 2222345668888888999999999999999999988643
No 40
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.93 E-value=0.0021 Score=53.90 Aligned_cols=205 Identities=6% Similarity=0.036 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.++..++..+++.|+++++.+.+++++... |.-+ ....+...+-..+....+ .+.-.+....+++-..+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~--~~~~a~~~lg~~~~~~~~-----~~~A~~~~~~~l~~~p~~ 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHE--WAADAQFYLARAYYQNKE-----YLLAASEYERFIQIYQID 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCST--THHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCc--chHHHHHHHHHHHHHhCc-----HHHHHHHHHHHHHHCCCC
Confidence 35678899999999999999999999998765 5421 112222222222221111 223344555555543323
Q ss_pred hhHHHHhhhHHHHHhh--------hcchhHHHHHHHHHHHHcccCCCCchhh-----hcchHHHHHHHHHHHHHhhcCHH
Q 025427 89 RLWFKTNLKLCKIWFD--------MGEYGRMSKILKELHKSCQREDGTDDQK-----KGSQLLEVYAIEIQMYTETKNNK 155 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~--------~~~y~~a~~li~~L~~~l~~~~~~dD~~-----kk~~LlEv~~lE~~~y~~~~n~~ 155 (253)
...-.....++..++. .|++++|...++++.+.-+..+...+.. ....+-+.+..--.+|...+++.
T Consensus 86 ~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 165 (261)
T 3qky_A 86 PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE 165 (261)
T ss_dssp TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 2333444578899988 9999999999999988743321000000 00011122244567889999999
Q ss_pred HHHHHHHHHHhhhccCC-chh---HHHHHHhhcccccc---ccccHHHHHHHHHHHhcccccccChhhHHHHHHH
Q 025427 156 KLKQLYQKALAIKSAIP-HPR---IMGIIRECGGKMHM---AERQWADAATDFFEAFKNYDEAGNQRRIQCLKYG 223 (253)
Q Consensus 156 klk~~y~~a~~~~~aI~-~P~---i~g~I~e~~Gkl~~---~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYl 223 (253)
++...|.++......-+ .|. ..|.+-..-|.... ..++|+.|...|-++.+.|- +++....+...+
T Consensus 166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~a~~~l 238 (261)
T 3qky_A 166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP--DSPLLRTAEELY 238 (261)
T ss_dssp HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--TCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--CChHHHHHHHHH
Confidence 99999999987643322 243 33333333333222 45999999999999998774 566555554443
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.90 E-value=0.0019 Score=54.85 Aligned_cols=176 Identities=9% Similarity=0.022 Sum_probs=117.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 92 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~l 92 (253)
...++.++...|+++++.+.+++.+... |.-+. ....+-..+....+ .+...+...++++...+..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~--- 188 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAE-----LRELRAECFIKEGE-----PRKAISDLKAASKLKSDNT--- 188 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTC-----HHHHHHHHHHHHTTCSCCH---
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchH-----HHHHHHHHHHHCCC-----HHHHHHHHHHHHHhCCCCH---
Confidence 3455899999999999999999998876 54322 22233332222111 1233344444444322221
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchh---hhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQ---KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~---~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
.....++.++...|++++|...+++..+.-+.. .+. -.....++.......++...+++.++...|.++.....
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 233489999999999999999999888763321 110 00111123344557778999999999999999988653
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. +|.....+-..=|.++...++|+.|...|-++.+.
T Consensus 266 ~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 266 S--VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp S--SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C--chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3 46666666666688889999999999999999885
No 42
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.90 E-value=0.01 Score=52.01 Aligned_cols=188 Identities=8% Similarity=-0.070 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhh-HHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYS-EKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~-~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
+...++..++.++...|+++++.+.+.+.+... +..+-... ..+...+-..... .+. .+.-.+.+.++++.+.
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~-~G~----~~~A~~~~~~al~~~~ 124 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMA-RQHDVWHYALWSLIQQSEILFA-QGF----LQTAWETQEKAFQLIN 124 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH-TTC----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHHHHHH-CCC----HHHHHHHHHHHHHHHH
Confidence 456688899999999999999999999999887 54332211 1111121111111 121 1233344444444332
Q ss_pred h---h--hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 87 N---E--RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 87 ~---e--rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
. . .........++.++...|++++|...+++.....+.. .+ .. ...++..-..++...+++.++...+
T Consensus 125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~~---~~-~~~~~~~la~~~~~~g~~~~A~~~l 197 (373)
T 1hz4_A 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY---QP---QQ-QLQCLAMLIQCSLARGDLDNARSQL 197 (373)
T ss_dssp HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS---CG---GG-GHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc---Cc---HH-HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 1 1 1122333478999999999999999999999887664 22 12 4467777888999999999999999
Q ss_pred HHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 162 QKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 162 ~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
..+..+...... +...+.+...-+.++...||++.|...+-++.+-.
T Consensus 198 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 198 NRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 999988655444 33344433344455678899999999988887643
No 43
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.86 E-value=0.00096 Score=58.21 Aligned_cols=99 Identities=14% Similarity=0.173 Sum_probs=76.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.+|...|+|++|...+++..+..+. + .+++..-..+|...+++.++...|.++..+.... |
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~- 281 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVRPE-----D-------YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF--I- 281 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc--h-
Confidence 47899999999999999999998877321 1 3456666778889999999999999998873221 2
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhccccccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAG 212 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g 212 (253)
..-..=|.++...|+|+.|..+|-+|.+-....+
T Consensus 282 ---~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 282 ---RSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp ---HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred ---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 2233346778889999999999999998765543
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.84 E-value=0.00067 Score=56.28 Aligned_cols=111 Identities=13% Similarity=0.062 Sum_probs=72.4
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhhhccCCc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN---NKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n---~~klk~~y~~a~~~~~aI~~ 173 (253)
.++...+..++|++|...+++..+.-+. + .+.+..-..++..+++ ..++...|.++..+....+.
T Consensus 147 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~-----~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 214 (272)
T 3u4t_A 147 ELGQAYYYNKEYVKADSSFVKVLELKPN-----I-------YIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA 214 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcc-----c-------hHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence 4552333344777777777776665211 1 3455556677777777 77788888888888776666
Q ss_pred h--hHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHH
Q 025427 174 P--RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 221 (253)
Q Consensus 174 P--~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LK 221 (253)
| .....+-..=|.++...+||++|..+|-++.+-. .+++.+.+.|.
T Consensus 215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~ 262 (272)
T 3u4t_A 215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD--PTNKKAIDGLK 262 (272)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHC
T ss_pred cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--ccHHHHHHHhh
Confidence 4 2233344445777888899999999988888743 35666666553
No 45
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.84 E-value=0.0009 Score=57.71 Aligned_cols=154 Identities=9% Similarity=0.029 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH---HHhhhh-
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL---EEAKNE- 88 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i---~~a~~e- 88 (253)
...++.++...|+++++++.+...+..............+.+++-..+....+ . ++..+...+++ +...+.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--~---~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--L---KKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCC--H---HHHHHHHHHHHHHHHhcCccc
Confidence 45688888999999999999999887652222222223444444444432211 2 23333444444 322222
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHH-HHHHHHHHhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL-KQLYQKALAI 167 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~kl-k~~y~~a~~~ 167 (253)
.+.......++.+|...|+|++|...+++..+..+.. ++ ...+.+++..-..+|..+++..++ ...|.+|..+
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~---~~---~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI---NS---MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT---TB---CSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc---Cc---HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 2333555699999999999999999999988887554 34 556788899999999999999999 9999999999
Q ss_pred hccCCchhHH
Q 025427 168 KSAIPHPRIM 177 (253)
Q Consensus 168 ~~aI~~P~i~ 177 (253)
...+..|...
T Consensus 267 ~~~~~~~~~~ 276 (293)
T 2qfc_A 267 FDILEMHAYK 276 (293)
T ss_dssp HHHTTCHHHH
T ss_pred HHHhCcHhhH
Confidence 9888876553
No 46
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.81 E-value=0.0032 Score=49.92 Aligned_cols=171 Identities=9% Similarity=-0.069 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
....++..++..+...|+++++.+.+++.+... +..+. ....+...+....+ .+...+...++++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~-----~~~A~~~~~~a~~~~~~ 74 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNEL-----AWLVRAEIYQYLKV-----NDKAQESFRQALSIKPD 74 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTT
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchH-----HHHHHHHHHHHcCC-----hHHHHHHHHHHHHhCCC
Confidence 345678899999999999999999999998876 54332 22222222221111 12333444454443332
Q ss_pred hhhHHHHhhhHHHHHhhh-cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 88 ERLWFKTNLKLCKIWFDM-GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~-~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
.. .....++.++... |++++|...+++..+ ... .....+++..-..+|...+++.++...|.++..
T Consensus 75 ~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~---------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 141 (225)
T 2vq2_A 75 SA---EINNNYGWFLCGRLNRPAESMAYFDKALA-DPT---------YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141 (225)
T ss_dssp CH---HHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT---------CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Ch---HHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC---------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 21 1224688999999 999999999888877 111 112245666777888889999999999999887
Q ss_pred hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 167 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 167 ~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.... +|.. ...=|.++...++|+.|..+|-++.+..
T Consensus 142 ~~~~--~~~~----~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 142 AQPQ--FPPA----FKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HSTT--CHHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCCC--CchH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 6432 2322 2223556778889999999998887743
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.81 E-value=0.0025 Score=56.76 Aligned_cols=174 Identities=9% Similarity=0.031 Sum_probs=116.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 92 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~l 92 (253)
...++..+.+.|+++++.+.+++.+... |.-+ .....+.+.+....+ .. ...+...++++...+. .
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g~-~~----~A~~~~~~~~~~~~~~---~ 211 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDA-----ELRELRAECFIKEGE-PR----KAISDLKAASKLKNDN---T 211 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH-----HHHHHHHHHHHHTTC-GG----GGHHHHHHHHHHHCSC---H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCh-----HHHHHHHHHHHHCCC-HH----HHHHHHHHHHHhCCCC---H
Confidence 4455778999999999999999998866 5422 233333333332221 11 2223444444432222 1
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchH-----HHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQL-----LEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~L-----lEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
.....++.+|...|++++|...+++..+.-+. +..-...+ ++...-...++...+++.++...|.++..+
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~ 286 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQD-----HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 286 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 22347899999999999999999998865322 11101111 122233478889999999999999999885
Q ss_pred hccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 168 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 168 ~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
... +|.....+-.+=|.++...|+|+.|...|-++.+.
T Consensus 287 ~p~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 287 EPS--IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp CCS--SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CCc--chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 432 57777778888899999999999999999988764
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0048 Score=50.01 Aligned_cols=178 Identities=11% Similarity=0.096 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE- 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e- 88 (253)
-.++..++..++..|+++++.+++++.+..- .. + .....+-..+....+ .+.-.+.+.++++-..+.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~-~-----~~~~~~~~~~~~~~~-----~~~A~~~~~~a~~~~~~~~ 72 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KD-I-----TYLNNRAAAEYEKGE-----YETAISTLNDAVEQGREMR 72 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CC-T-----HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-cc-H-----HHHHHHHHHHHHccc-----HHHHHHHHHHHHHhCcccc
Confidence 3578999999999999999999999988765 22 1 122222222221111 123334444444433221
Q ss_pred --h-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCch-----------------hhhcchHHHHHHHHHHHH
Q 025427 89 --R-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD-----------------QKKGSQLLEVYAIEIQMY 148 (253)
Q Consensus 89 --r-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD-----------------~~kk~~LlEv~~lE~~~y 148 (253)
. ........++.++...|++++|...+++..+.-+.. +. ........+++..-..+|
T Consensus 73 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 73 ADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA---DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEY 149 (258)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh---HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 1 124455589999999999999998888887742210 00 001233467788888899
Q ss_pred HhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 149 TETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 149 ~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
...+++.++...|.++...... +| .+-..=|.++...++|+.|..+|-++.+..
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE--DA----RGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHhcCcc--cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 9999999999999999876432 13 223334667788899999999999988743
No 49
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.81 E-value=0.0024 Score=55.73 Aligned_cols=115 Identities=12% Similarity=0.083 Sum_probs=90.5
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
.+.-..++.+|...|+|++|....++..+..+.. .| ......++.-=-.+|.. +++.++...|.+|..+....
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~---g~---~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~ 148 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVEN---GT---PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENE 148 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT---TC---HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc---CC---HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhC
Confidence 3344488999999999999999998887776554 23 22334455555567777 99999999999999988776
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
..|...+.+-.-=|.++...++|+.|..+|-+|.+-+.+.++
T Consensus 149 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 190 (307)
T 2ifu_A 149 ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMEN 190 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 667777777777789999999999999999999997766554
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.80 E-value=0.00058 Score=52.41 Aligned_cols=170 Identities=8% Similarity=0.008 Sum_probs=114.0
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
+....++..++..+...|+++++.+.+++.+... +.-+ .....+...+....+ .+.-.+...++++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~-----~~~A~~~~~~~~~~~~ 73 (186)
T 3as5_A 5 DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDV-----DVALHLGIAYVKTGA-----VDRGTELLERSLADAP 73 (186)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCH-----HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCT
T ss_pred chhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccCh-----HHHHHHHHHHHHcCC-----HHHHHHHHHHHHhcCC
Confidence 4556788899999999999999999998887665 4322 222222222221111 1233334444444322
Q ss_pred hhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 87 NERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 87 ~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
+.. .....++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...+.++..
T Consensus 74 ~~~---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 138 (186)
T 3as5_A 74 DNV---KVATVLGLTYVQVQKYDLAVPLLIKVAEANPI-----N-------FNVRFRLGVALDNLGRFDEAIDSFKIALG 138 (186)
T ss_dssp TCH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcH-----h-------HHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence 221 22347899999999999999999988877221 1 35666777889999999999999999987
Q ss_pred hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 167 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 167 ~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.... +|. +...=|.++...++|+.|..+|-++.+-.
T Consensus 139 ~~~~--~~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 139 LRPN--EGK----VHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCcc--chH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6422 122 22344566778899999999999888754
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.78 E-value=0.0029 Score=51.86 Aligned_cols=172 Identities=12% Similarity=0.065 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 85 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a 85 (253)
.+..-.++..++..+...|+++++.+.+++.+..- +..+. ....+-..+....+ .+...+...++++..
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~-----~~~~la~~~~~~~~-----~~~A~~~~~~a~~~~ 101 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSAD-----AHAALAVVFQTEME-----PKLADEEYRKALASD 101 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTC-----HHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHH-----HHHHHHHHHHHcCC-----HHHHHHHHHHHHHHC
Confidence 34446788999999999999999999999988876 54332 22222222221111 123334444444433
Q ss_pred hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
.+.. .....++.++...|++++|...++++.+ .. . .....+++..-..+|...+++.++...|.++.
T Consensus 102 ~~~~---~~~~~la~~~~~~g~~~~A~~~~~~~~~---~~----~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 102 SRNA---RVLNNYGGFLYEQKRYEEAYQRLLEASQ---DT----L---YPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp TTCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTT---CT----T---CTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCcH---HHHHHHHHHHHHHhHHHHHHHHHHHHHh---Cc----c---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3221 2234678889999999999888888766 11 1 11224566666778888899999999998887
Q ss_pred hhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 166 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 166 ~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
..... +|. +...=|.++...++|+.|...|-++.+.
T Consensus 169 ~~~~~--~~~----~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 169 RLNRN--QPS----VALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHCSC--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCcc--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76422 122 2234456677888999999888888764
No 52
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.78 E-value=0.0025 Score=56.78 Aligned_cols=172 Identities=7% Similarity=0.086 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh-
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER- 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er- 89 (253)
.++..++.++.+.|+++++.+.+.+.+..- +.-+ .+...+...+....+ .+.-.+...++++...+..
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-----~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 178 ELRELRAECFIKEGEPRKAISDLKAASKLK-NDNT-----EAFYKISTLYYQLGD-----HELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCH-----HHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH-----HHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCCChHH
Confidence 456778999999999999999999998876 4332 223333333322111 1233344444444333222
Q ss_pred hHH--------HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHH
Q 025427 90 LWF--------KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLY 161 (253)
Q Consensus 90 l~l--------k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y 161 (253)
.|. ...+.++..+...|++++|...+++..+.-+ ++ .....+++..-..++...+++.++...|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-----~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 318 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP-----SI---AEYTVRSKERICHCFSKDEKPVEAIRVC 318 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-----SS---HHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----cc---hHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 221 1224669999999999999999999887522 23 4456788888899999999999999999
Q ss_pred HHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 162 QKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 162 ~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.++..+... +|. +-..=|.++...++|+.|..+|-++.+-
T Consensus 319 ~~a~~~~p~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 319 SEVLQMEPD--NVN----ALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhCcc--cHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 999876321 132 2223456677889999999999999884
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.78 E-value=0.0036 Score=49.66 Aligned_cols=178 Identities=14% Similarity=0.016 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++...|+++++.+++.+.+... +.-+. ....+...+....+ + .+...+...++++ ......
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~l~~~~~~~~~-~---~~~A~~~~~~~~~-~~~~~~ 111 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAE-----INNNYGWFLCGRLN-R---PAESMAYFDKALA-DPTYPT 111 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHTTTC-C---HHHHHHHHHHHHT-STTCSC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChH-----HHHHHHHHHHHhcC-c---HHHHHHHHHHHHc-CcCCcc
Confidence 467788999999999999999999998876 54322 33334444433202 1 2344455555555 111111
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.......++.++...|++++|...+++..+.-+ ++ .+++..-..+|...+++.++...|..+.....
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~- 178 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-----QF-------PPAFKELARTKMLAGQLGDADYYFKKYQSRVE- 178 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence 223335899999999999999999998877621 11 45677778889999999999999999887643
Q ss_pred CCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 171 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 171 I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
-.+|.. -..++.++...++++.|..++-..-+.+ .+++....
T Consensus 179 ~~~~~~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~ 220 (225)
T 2vq2_A 179 VLQADD----LLLGWKIAKALGNAQAAYEYEAQLQANF--PYSEELQT 220 (225)
T ss_dssp SCCHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCCHHH----HHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 012333 3467778889999998877665554433 24444433
No 54
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.76 E-value=0.0096 Score=50.02 Aligned_cols=98 Identities=14% Similarity=0.086 Sum_probs=71.9
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...|.++...... +|
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 240 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPD-----D-------AQLWNKLGATLANGNRPQEALDAYNRALDINPG--YV 240 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH
Confidence 347888999999999999988888776221 1 245666678888899999999999998876422 13
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
... ..=|.++...|+|+.|..+|-++.+....
T Consensus 241 ~~~----~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 241 RVM----YNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHH----HHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHH----HHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 22366678889999999999888876544
No 55
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.74 E-value=0.0015 Score=60.73 Aligned_cols=100 Identities=9% Similarity=0.071 Sum_probs=77.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.+|...|++++|..++++..+..++.+ .+ .....+++..-..+|...+++.++...|.++...... +|.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~---p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~~~ 552 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQ--SN---EKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DANV 552 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSC--CC---SGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccc--cc---hhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--ChHH
Confidence 789999999999999999999888755432 12 2234678888889999999999999999999876511 2432
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. ..=|.++...|+|+.|..+|-++.+-
T Consensus 553 ~----~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 553 H----TAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp H----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 23355678899999999999998884
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.74 E-value=0.0058 Score=49.98 Aligned_cols=168 Identities=15% Similarity=0.066 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++...|+++++.+.+.+.+... +.-+. ....+...+....+ .+...+...++++ ......
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~la~~~~~~g~-----~~~A~~~~~~~~~-~~~~~~ 139 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASD-SRNAR-----VLNNYGGFLYEQKR-----YEEAYQRLLEASQ-DTLYPE 139 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-----HHHHHHHHHHHTTC-----HHHHHHHHHHHTT-CTTCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHH-----HHHHHHHHHHHHhH-----HHHHHHHHHHHHh-CccCcc
Confidence 467789999999999999999999998876 54322 23333333322111 2233344444444 111112
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.......++.+++..|++++|...+++..+..+. + .+++..-..+|...+++.++...|..+.....
T Consensus 140 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~- 206 (252)
T 2ho1_A 140 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-----Q-------PSVALEMADLLYKEREYVPARQYYDLFAQGGG- 206 (252)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 2334458899999999999999999988876221 1 46677778889999999999999999876432
Q ss_pred CCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 171 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 171 I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.+|.. -..-|.++...+|++.|..+|-++.+.+
T Consensus 207 -~~~~~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 207 -QNARS----LLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp -CCHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -CcHHH----HHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 12332 3345667788999999999988887754
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.73 E-value=0.0034 Score=50.75 Aligned_cols=92 Identities=9% Similarity=-0.056 Sum_probs=45.3
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.+++..|++++|...+++..+..+. + .+++..-..+|...+++.++...|.++...... +|.
T Consensus 130 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~- 194 (243)
T 2q7f_A 130 MLGTVLVKLEQPKLALPYLQRAVELNEN-----D-------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HAD- 194 (243)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCc-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHH-
Confidence 4555666666666666555555544211 1 123444445555566666666666655543211 121
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
+-..=|.++...++++.|..+|-++.+
T Consensus 195 ---~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 195 ---AFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp ---HHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 122223444555566666655555554
No 58
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.72 E-value=0.0014 Score=60.81 Aligned_cols=99 Identities=10% Similarity=-0.024 Sum_probs=72.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
.++..|...|++++|...++++.+..+. + .+++..-..+|...+++.++...|.++.......+. |.
T Consensus 446 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 446 FLGMQHMQLGNILLANEYLQSSYALFQY-----D-------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 5788888888888888888888765221 2 245666677888888999999999888887655443 65
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
..+.+-.+=|.++...|+|+.|...|-++.+.
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 44455555667778888999998888888764
No 59
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.71 E-value=0.0037 Score=51.73 Aligned_cols=170 Identities=6% Similarity=0.010 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
|.-.++.+++..+.+.|+++++.+.+++++... |. ++. .
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~-------------------~~~--~------------------- 40 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PF-------------------GPY--S------------------- 40 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT-------------------STT--H-------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-------------------ChH--H-------------------
Confidence 556788899999999999999999998877654 32 000 0
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHH------------------H
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMY------------------T 149 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y------------------~ 149 (253)
-.....++.+|+..|+|++|....+++.+.-++. ...-+.+..--.+| .
T Consensus 41 ----~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 107 (225)
T 2yhc_A 41 ----QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDR 107 (225)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------TTHHHHHHHHHHHHHHHHC--------------
T ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhc
Confidence 0112356888899999999999888888763321 11112222222222 2
Q ss_pred hhcCHHHHHHHHHHHHhhh-ccCCchhHHHHHH----------hhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 150 ETKNNKKLKQLYQKALAIK-SAIPHPRIMGIIR----------ECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 150 ~~~n~~klk~~y~~a~~~~-~aI~~P~i~g~I~----------e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
..++..++...|.++...- ++...+.....+. ..-|.++...|+|..|...|-++.+.|. ++|....
T Consensus 108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~ 185 (225)
T 2yhc_A 108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYP--DTQATRD 185 (225)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST--TSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCc--CCCccHH
Confidence 3578889999998887643 3333344333332 3447788999999999999999999874 4566667
Q ss_pred HHHHHHHHHHhccCC
Q 025427 219 CLKYGFYLHLLFLIS 233 (253)
Q Consensus 219 ~LKYlvL~~iL~~s~ 233 (253)
++-++..|..-.|..
T Consensus 186 a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 186 ALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHcCCc
Confidence 777777766655543
No 60
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.70 E-value=0.0015 Score=58.87 Aligned_cols=192 Identities=9% Similarity=0.028 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++..++.++...|+++++.+.+++.+..- +.-+. ....+...+....+ .+...+...++++...+..
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~-----~~~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~-- 372 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIF-----PYIQLACLAYRENK-----FDDCETLFSEAKRKFPEAP-- 372 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSH-----HHHHHHHHTTTTTC-----HHHHHHHHHHHHHHSTTCS--
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHH-----HHHHHHHHHHHcCC-----HHHHHHHHHHHHHHcccCH--
Confidence 45666777777777777777777766654 43221 22222222222111 2233444445444333221
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHhhh
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~---~~n~~klk~~y~~a~~~~ 168 (253)
.....++.++...|++++|...+++..+..+.. .+ .....+++..-..+|.. .+++.++...|.++....
T Consensus 373 -~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~---~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 373 -EVPNFFAEILTDKNDFDKALKQYDLAIELENKL---DG---IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS---SS---CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc---ch---HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 223478999999999999999999988775443 12 22234567777888899 999999999999998764
Q ss_pred ccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhcc
Q 025427 169 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFL 231 (253)
Q Consensus 169 ~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~ 231 (253)
.. +|. +...=|.++...|+|+.|..+|-++.+-. .+++.+...+.|+-.......
T Consensus 446 ~~--~~~----~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~ 500 (514)
T 2gw1_A 446 PR--SEQ----AKIGLAQMKLQQEDIDEAITLFEESADLA--RTMEEKLQAITFAEAAKVQQR 500 (514)
T ss_dssp TT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSHHHHHHHHHHHHHHHHHHH
T ss_pred cc--cHH----HHHHHHHHHHHhcCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHHH
Confidence 22 122 22334667888999999999999998854 356788888888877666544
No 61
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.70 E-value=0.0024 Score=53.89 Aligned_cols=100 Identities=11% Similarity=-0.033 Sum_probs=69.6
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch--
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP-- 174 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P-- 174 (253)
.++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...|.++.........+
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIAPE-----D-------PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhCCC-----C-------hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 4788888888888888888877765221 1 3456666778888899999999999988876443321
Q ss_pred -hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 -RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 -~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.-...+-..=|.++...|+|+.|..+|-++.+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 1112233334666778889999999988887643
No 62
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.65 E-value=0.0022 Score=53.12 Aligned_cols=164 Identities=11% Similarity=0.119 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+.+.|+++++...|++.+..- |.-+.+...... .+.. .+. .+.-.+....+++-..+.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~-----~~~~-~g~----~~~A~~~~~~al~~~P~~-- 72 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLAR-----TQLK-LGL----VNPALENGKTLVARTPRY-- 72 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHH-----HHHH-TTC----HHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH-----HHHH-cCC----HHHHHHHHHHHHHhCCCc--
Confidence 367789999999999999999999998876 654443332221 1111 111 123334444444433222
Q ss_pred HHHHhhhHHHHHhhh-----------cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHH
Q 025427 91 WFKTNLKLCKIWFDM-----------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQ 159 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~-----------~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~ 159 (253)
......++.++... |++++|...+++..+.-+ ++ .+++..--.+|..++++.++.+
T Consensus 73 -~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-----~~-------~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 73 -LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-----RY-------APLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp -HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHcCChHHHHH
Confidence 22334678888888 999999999888887611 11 3566777888999999999999
Q ss_pred HHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 160 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 160 ~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.|.+|..+. .+|.+. ..=|.++...|+|+.|...|-.+.+-
T Consensus 140 ~~~~al~~~---~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 140 SLKQALALE---DTPEIR----SALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HHHHHHHHC---CCHHHH----HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc---cchHHH----HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999887 455433 34466788889999999999888874
No 63
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.64 E-value=0.0041 Score=51.40 Aligned_cols=167 Identities=12% Similarity=0.048 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHh-cCCCCcchh----HHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFV-SGSASQNFS----LLREFYQTTLKALEEA 85 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~-s~~~~~~~~----~l~~~y~~~~e~i~~a 85 (253)
.++..++.++.+.|+++++.+.+++.+..- |.-+.+...... +.... ..... .. -.++-.+...++++-.
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~--~~~~~~~~~~~--~~~~~g~~~~A~~~~~~al~~~ 114 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE--AYVALYRQAED--RERGKGYLEQALSVLKDAERVN 114 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHHHHTCSS--HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH--HHHHhhhhhhh--hcccccCHHHHHHHHHHHHHhC
Confidence 467789999999999999999999999887 654433322221 11100 00000 10 1122223333333322
Q ss_pred hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
.+ .......++.+|...|++++|...+++..+.- . -.+++..--.+|..++++.++...|.++.
T Consensus 115 P~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 178 (217)
T 2pl2_A 115 PR---YAPLHLQRGLVYALLGERDKAEASLKQALALE-D------------TPEIRSALAELYLSMGRLDEALAQYAKAL 178 (217)
T ss_dssp TT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cc---cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c------------chHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 12233578999999999999999999988772 1 13456666778899999999999999998
Q ss_pred hhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHH
Q 025427 166 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 166 ~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EA 204 (253)
..... +|.+. ..=|.++...|+++.|...|-++
T Consensus 179 ~~~P~--~~~~~----~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 179 EQAPK--DLDLR----VRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHSTT--CHHHH----HHHHHHHTC--------------
T ss_pred HhCCC--ChHHH----HHHHHHHHHccCHHHHHHHHHHH
Confidence 86422 13322 22366778889999998876554
No 64
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.63 E-value=0.0019 Score=52.22 Aligned_cols=173 Identities=12% Similarity=0.080 Sum_probs=97.1
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALE 83 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~ 83 (253)
..+.|.-.++..++..+...|+++++.+.+++.+..- +.-+. ....+-..+....+ .+...+.+.++++
T Consensus 17 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~-----~~~~la~~~~~~~~-----~~~A~~~~~~~~~ 85 (243)
T 2q7f_A 17 RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAI-----PYINFANLLSSVNE-----LERALAFYDKALE 85 (243)
T ss_dssp -------------------------CCTTHHHHHTTC-TTCHH-----HHHHHHHHHHHTTC-----HHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHH-----HHHHHHHHHHHcCC-----HHHHHHHHHHHHH
Confidence 3466888899999999999999999999999998765 44322 22222222221111 1233344444444
Q ss_pred HhhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 84 EAKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 84 ~a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
-..+. ......++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...|.+
T Consensus 86 ~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 86 LDSSA---ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGME-----N-------GDLFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCC-----S-------HHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCcc---hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 33222 123347899999999999999999998887322 1 24567778889999999999999999
Q ss_pred HHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 164 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 164 a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
+...... +|. +...-|.++...++|+.|...|-++.+..
T Consensus 151 ~~~~~~~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 189 (243)
T 2q7f_A 151 AVELNEN--DTE----ARFQFGMCLANEGMLDEALSQFAAVTEQD 189 (243)
T ss_dssp HHHHCTT--CHH----HHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHhCCc--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9876332 232 33344667888999999999999887753
No 65
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.61 E-value=0.0058 Score=53.16 Aligned_cols=95 Identities=8% Similarity=0.036 Sum_probs=66.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.++...|++++|...+++..+.-+.. .-.+++..-..+|...+++.++...|.++...... +|.
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~- 248 (365)
T 4eqf_A 182 RMSKSPVDSSVLEGVKELYLEAAHQNGDM----------IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--DYS- 248 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSS----------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCcCc----------cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHH-
Confidence 67999999999999999999998873221 11345566678888999999999999999886432 132
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+-..=|.++...|+|+.|..+|-++.+.
T Consensus 249 ---~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 249 ---LWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 2233466788899999999999999875
No 66
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.59 E-value=0.013 Score=48.95 Aligned_cols=152 Identities=12% Similarity=0.154 Sum_probs=90.2
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh---hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA---VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKA 81 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~---v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~ 81 (253)
+..+.-.|+..++.++.+.|+++++.+.+++++... |. .+.+......- ..........+..-.+.-.....++
T Consensus 47 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~--~~~~~~~~~~~~~~~~~A~~~~~~~ 123 (261)
T 3qky_A 47 THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPRVPQAEYERAMC--YYKLSPPYELDQTDTRKAIEAFQLF 123 (261)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHH--HHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCchhHHHHHHHHHH--HHHhcccccccchhHHHHHHHHHHH
Confidence 345668899999999999999999999999999875 42 11111111100 0000000000000111222222222
Q ss_pred HHHhhhhh--------------hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH
Q 025427 82 LEEAKNER--------------LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM 147 (253)
Q Consensus 82 i~~a~~er--------------l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~ 147 (253)
++...+.. -.-...+.++.+|+..|+|++|....+++.+.-+. .....+.+..=..+
T Consensus 124 l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---------~~~~~~a~~~l~~~ 194 (261)
T 3qky_A 124 IDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---------TPWADDALVGAMRA 194 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---------STTHHHHHHHHHHH
T ss_pred HHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---------CchHHHHHHHHHHH
Confidence 22111111 01112368899999999999999999998876322 23345666666777
Q ss_pred HHhh----------cCHHHHHHHHHHHHhhh
Q 025427 148 YTET----------KNNKKLKQLYQKALAIK 168 (253)
Q Consensus 148 y~~~----------~n~~klk~~y~~a~~~~ 168 (253)
|..+ +++.++...|.++....
T Consensus 195 ~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 195 YIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 7766 88899999999987754
No 67
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.54 E-value=0.0047 Score=51.05 Aligned_cols=168 Identities=9% Similarity=0.068 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++...+..++..|+++++.+.+++.+..- |.-+.+....+ ..+.. .+ + .+.-.+.+.++++...+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~-----~~~~~-~~-~---~~~A~~~~~~a~~~~~~~~~ 72 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRA-----VCYYE-LA-K---YDLAQKDIETYFSKVNATKA 72 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHH-----HHHHH-TT-C---HHHHHHHHHHHHTTSCTTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH-----HHHHH-Hh-h---HHHHHHHHHHHHhccCchhH
Confidence 356788999999999999999999998876 54332222222 11111 11 1 22444555555553322334
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.......++.++...|+|++|...++...+.-+. + .+++..-..+|...+++.++...|.++......
T Consensus 73 ~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 140 (272)
T 3u4t_A 73 KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-----R-------LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT 140 (272)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-----c-------HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC
Confidence 3444568999999999999999999988886221 1 256777788899999999999999998877222
Q ss_pred CCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 171 IPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
-+. -...|. ..+ ..++|+.|..+|-++.+-.
T Consensus 141 ~~~~~~~l~~------~~~-~~~~~~~A~~~~~~a~~~~ 172 (272)
T 3u4t_A 141 DPKVFYELGQ------AYY-YNKEYVKADSSFVKVLELK 172 (272)
T ss_dssp CHHHHHHHHH------HHH-HTTCHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHH------HHH-HHHHHHHHHHHHHHHHHhC
Confidence 111 112331 222 2239999999999998754
No 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.53 E-value=0.0047 Score=56.19 Aligned_cols=118 Identities=8% Similarity=0.043 Sum_probs=82.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh----------cCHHHHHHHHHHHHh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----------KNNKKLKQLYQKALA 166 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~----------~n~~klk~~y~~a~~ 166 (253)
.++.++...|++++|...+++..+..+.. .+ ....+-.+.....+|... +++.++...|.++..
T Consensus 383 ~l~~~~~~~g~~~~A~~~~~~a~~~~~~~---~~---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 383 FFAEILTDRGDFDTAIKQYDIAKRLEEVQ---EK---IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHC---SS---CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHcCCcc---hh---hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 67999999999999999999888875443 12 222333344455677777 999999999999987
Q ss_pred hhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHH
Q 025427 167 IKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHL 228 (253)
Q Consensus 167 ~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~i 228 (253)
.... +| .+...=|.++...|+|+.|..+|-++.+-.. .++...+.+.+..-+.+
T Consensus 457 ~~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~ 510 (537)
T 3fp2_A 457 LDPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAILAR--TMDEKLQATTFAEAAKI 510 (537)
T ss_dssp HCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred hCCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CcHHHHHHHhHHHHHHH
Confidence 6432 23 2334556778889999999999999998553 44566666655544444
No 69
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=97.49 E-value=0.0076 Score=43.17 Aligned_cols=28 Identities=29% Similarity=0.560 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTY 39 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~ 39 (253)
++..++..+...|+++++.+.+++.+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 30 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL 30 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc
Confidence 5678899999999999999888877654
No 70
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.49 E-value=0.0039 Score=52.45 Aligned_cols=103 Identities=6% Similarity=-0.066 Sum_probs=77.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...|.++.........|.
T Consensus 210 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 277 (327)
T 3cv0_A 210 NKLGATLANGNRPQEALDAYNRALDINPG-----Y-------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPT 277 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccc
Confidence 48899999999999999999988876321 1 24556667888999999999999999998776533322
Q ss_pred H------HHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 176 I------MGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 176 i------~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
- ...+...=|.++...++++.|...|-++.+.+.+
T Consensus 278 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~ 318 (327)
T 3cv0_A 278 GEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAK 318 (327)
T ss_dssp ---CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHH
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 1 4455555677788889999999988777776654
No 71
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.48 E-value=0.011 Score=48.79 Aligned_cols=152 Identities=9% Similarity=0.090 Sum_probs=91.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhh---hhhHHHHHHH------HHHhcCCCC--cchhHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTR---NYSEKCINNI------MDFVSGSAS--QNFSLLRE 73 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k---a~~~K~i~~i------ld~~s~~~~--~~~~~l~~ 73 (253)
.+.+.-.|+..++.++.+.|+++++.+.|++++... |.-+. +..-...--. ++.+..... .+..-.++
T Consensus 36 ~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (225)
T 2yhc_A 36 FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA 114 (225)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence 355677899999999999999999999999998766 53221 1110000000 000000000 00001112
Q ss_pred HHHHHHHHHHHhhhh-hhH-------------HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHH
Q 025427 74 FYQTTLKALEEAKNE-RLW-------------FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE 139 (253)
Q Consensus 74 ~y~~~~e~i~~a~~e-rl~-------------lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlE 139 (253)
-.....+.++...+. ..| -...+.++.+|+..|+|.+|....+++.+.-+. ....-+
T Consensus 115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---------~~~~~~ 185 (225)
T 2yhc_A 115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD---------TQATRD 185 (225)
T ss_dssp HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---------SHHHHH
T ss_pred HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC---------CCccHH
Confidence 222222222211110 111 112246899999999999999999988877432 234557
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 140 VYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 140 v~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
++..-..+|..+++..++...+..+..
T Consensus 186 a~~~l~~~~~~~g~~~~A~~~~~~l~~ 212 (225)
T 2yhc_A 186 ALPLMENAYRQMQMNAQAEKVAKIIAA 212 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 788888999999999999999987765
No 72
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.48 E-value=0.0048 Score=48.04 Aligned_cols=137 Identities=13% Similarity=0.128 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.++++.+..+++.|+++++.+.|++.+..+ +..+. ...|+ +.+ |....
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~-~~~~~--------------~~~~~-~~~--------------~~~~~ 59 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRL-DTLIL--------------REKPG-EPE--------------WVELD 59 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH--------------TSCTT-SHH--------------HHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhcc--------------cCCCC-HHH--------------HHHHH
Confidence 34688999999999999999999999999888 44221 01122 110 11111
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.........++..|+..|+|++|....+...+.- . .-.+.+..--.+|..++++.++...|.+|..+.
T Consensus 60 ~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-------p-----~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-------E-----TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-------T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-------C-----cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 2333344578999999999999999988888761 1 114567777889999999999999999999874
Q ss_pred ccCCch-hHHHHHHhhcccccc
Q 025427 169 SAIPHP-RIMGIIRECGGKMHM 189 (253)
Q Consensus 169 ~aI~~P-~i~g~I~e~~Gkl~~ 189 (253)
.. +| .+...+..|--++.-
T Consensus 128 p~--~~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 128 PA--AASVVAREMKIVTERRAE 147 (162)
T ss_dssp GG--GHHHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHHHH
Confidence 32 24 455555555544443
No 73
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.47 E-value=0.028 Score=50.50 Aligned_cols=181 Identities=17% Similarity=0.128 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.++...+..+++.|+++++.+.|++.+..- |. ......+...+....+ .+.-.+.+.++++-..+
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~------~~~~~~la~~~~~~g~-----~~~A~~~~~~al~~~p~- 71 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK-ED------PVFYSNLSACYVSVGD-----LKKVVEMSTKALELKPD- 71 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-CC------HHHHHHHHHHHHHHTC-----HHHHHHHHHHHHHHCSC-
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cc------HHHHHhHHHHHHHHhh-----HHHHHHHHHHHhccChH-
Confidence 34688999999999999999999999999876 53 1223333332221111 22334445555443222
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhh-----------------------------------
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKK----------------------------------- 133 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~k----------------------------------- 133 (253)
.......++.+|...|+|++|...++++.+.-+.. ++...
T Consensus 72 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 72 --YSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN---DASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC---GGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred --HHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 22344579999999999999999998877653211 11000
Q ss_pred -----------------------------------cchHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHh-----hhcc
Q 025427 134 -----------------------------------GSQLLEVYAIEIQMYTE---TKNNKKLKQLYQKALA-----IKSA 170 (253)
Q Consensus 134 -----------------------------------k~~LlEv~~lE~~~y~~---~~n~~klk~~y~~a~~-----~~~a 170 (253)
...-.+++......+.. .+++.++...|.++.. +...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 00013444444444554 7889999999999988 4222
Q ss_pred CCch---hHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 171 IPHP---RIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 171 I~~P---~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
-.++ .-.+.+-..-|..+...++|+.|...|-++.+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 266 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL 266 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 2221 334455556678888999999999999888764
No 74
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.45 E-value=0.0049 Score=48.42 Aligned_cols=132 Identities=12% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++.+.|+++++.+.+....... +..+....... .......+ . +...+...++++...+.
T Consensus 40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~--~---~~a~~~~~~a~~~~~~~-- 106 (184)
T 3vtx_A 40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG-----SANFMIDE--K---QAAIDALQRAIALNTVY-- 106 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH-----HHHHHTTC--H---HHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH-----HHHHHcCC--H---HHHHHHHHHHHHhCccc--
Confidence 578899999999999999999999988877 55443222221 11111111 1 22233344444332222
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
......++.+|...|+|++|....++..+.-+ ++ .+++..=-.+|..++++.++...|.+|..+.
T Consensus 107 -~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 171 (184)
T 3vtx_A 107 -ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-----GF-------IRAYQSIGLAYEGKGLRDEAVKYFKKALEKE 171 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-----hh-------hhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence 22334789999999999999999988877621 11 3556666788999999999999999998764
No 75
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.45 E-value=0.0057 Score=46.56 Aligned_cols=117 Identities=10% Similarity=0.170 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.|.+++|..++++|+++++++.|++.+..- |+ +. ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-----------------------p~-~~--------------------~~ 44 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-----------------------PS-NI--------------------TF 44 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------TT-CH--------------------HH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------CC-CH--------------------HH
Confidence 478899999999999999999998776542 22 11 01
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
-..++.+|+..|+|++|+...+...+.-+... .+ -..+..++.---.+|.+++++.++...|.+|+...
T Consensus 45 ----~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~--~~---~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-- 113 (127)
T 4gcn_A 45 ----YNNKAAVYFEEKKFAECVQFCEKAVEVGRETR--AD---YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF-- 113 (127)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred ----HHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc--hh---hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence 12578899999999999998888877644321 22 33455677777778889999999999999988753
Q ss_pred CCchhHHHHHHhh
Q 025427 171 IPHPRIMGIIREC 183 (253)
Q Consensus 171 I~~P~i~g~I~e~ 183 (253)
+.|.+...|+++
T Consensus 114 -~~~~~~~~l~~l 125 (127)
T 4gcn_A 114 -RDPELVKKVKEL 125 (127)
T ss_dssp -CCHHHHHHHHHH
T ss_pred -cCHHHHHHHHHh
Confidence 347776666553
No 76
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.45 E-value=0.0042 Score=56.51 Aligned_cols=33 Identities=12% Similarity=-0.028 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
-.++..++.++...|+++++.+.+++.+..- |.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-~~ 275 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLH-PT 275 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-CC
Confidence 3468889999999999999999999888765 44
No 77
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.00046 Score=67.22 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=81.6
Q ss_pred hhhHH---HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCC-chhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 88 ERLWF---KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGT-DDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 88 erl~l---k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~-dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
.|+|| +..=+++++..+.+.......+-..|+..++...-- |+..+ -=++-+..+.|...+.+..+-.+..+
T Consensus 181 ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr~D~~~q----a~l~nllLRnYL~~~~y~qA~~lvsk 256 (523)
T 4b4t_S 181 AKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLKHDNETK----AMLINLILRDFLNNGEVDSASDFISK 256 (523)
T ss_dssp ----------------------CHHHHHHHHTHHHHHHHHCCSCSSSCHH----HHHHHHHHHHHHHSSCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcccCcchh----HHHHHHHHHHHHccCcHHHHHHHHhc
Confidence 45666 222255556555555555555556666665544322 33222 22455888999988877666666555
Q ss_pred HHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccc--cccChhhHHHHHHHHHHHHhccC
Q 025427 164 ALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD--EAGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 164 a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd--e~g~~~a~~~LKYlvL~~iL~~s 232 (253)
+--..+.. ....++.=.-..|++++-+++|..|+.+|.+||+.-. ......+..++||+|+|+||+|.
T Consensus 257 ~~fP~~~~-sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 257 LEYPHTDV-SSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp HCSCTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCcccC-CHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCC
Confidence 42111111 1234467777789999999999999999999999643 22445789999999999999875
No 78
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.41 E-value=0.013 Score=50.48 Aligned_cols=172 Identities=8% Similarity=-0.003 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+.+.|+++++.+.+++.+..- |.-+.+.. .+-..+....+ .+.-.+.+.++++-..+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~-----~l~~~~~~~g~-----~~~A~~~~~~al~~~~~~-- 131 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQ-----YLGTTQAENEQ-----ELLAISALRRCLELKPDN-- 131 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHH-----HHHHHHHHTTC-----HHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHHCcC-----HHHHHHHHHHHHhcCCCC--
Confidence 356688999999999999999999998775 54332222 22222211111 122333344443322221
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcc-----------------------------------
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGS----------------------------------- 135 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~----------------------------------- 135 (253)
......++.+|...|++++|...+++..+..+.. .+ ....
T Consensus 132 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 206 (368)
T 1fch_A 132 -QTALMALAVSFTNESLQRQACEILRDWLRYTPAY---AH-LVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206 (368)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT---GG-GCC---------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc---HH-HHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHH
Confidence 1223356777777777777777777666543221 11 0000
Q ss_pred ------h--HHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 136 ------Q--LLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 136 ------~--LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
. ..+++..-..+|...+++.++...|.++..+... +|. .-..=|.++...++|+.|..+|-++.+
T Consensus 207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~al~ 279 (368)
T 1fch_A 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYL----LWNKLGATLANGNQSEEAVAAYRRALE 279 (368)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0 2345555566667777777777777777665211 121 222335556666777777777776665
No 79
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.38 E-value=0.0015 Score=49.85 Aligned_cols=100 Identities=11% Similarity=0.177 Sum_probs=81.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-chh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP-HPR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~-~P~ 175 (253)
.+++.++..|+|++|+...++..+.-+ ++ .+++.--..+|..++++.++...|.+|..+....+ .+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p-----~~-------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELDP-----SN-------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 689999999999999999888877621 12 35666677889999999999999999999866544 366
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
..|.+-..=|..+...++|+.|..+|-.|.+-.
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 677777777899999999999999999988743
No 80
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.35 E-value=0.0045 Score=45.48 Aligned_cols=113 Identities=11% Similarity=0.047 Sum_probs=83.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..+++.|+|++|...++++.+.-+. .....+++..-..+|...+++.++...|..+......- |.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~--~~ 74 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN---------GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH--DK 74 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS---------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS--TT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC---------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC--cc
Confidence 36889999999999999999988876322 23334667777888999999999999999998764322 21
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHH
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 222 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKY 222 (253)
.......-|.++...|+|+.|...|-++.+.+. +++.+..++..
T Consensus 75 -~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p--~~~~~~~a~~~ 118 (129)
T 2xev_A 75 -AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYP--GSDAARVAQER 118 (129)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TSHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CChHHHHHHHH
Confidence 122333447778899999999999999998773 45555555443
No 81
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.34 E-value=0.038 Score=48.45 Aligned_cols=30 Identities=23% Similarity=0.413 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.++..++.++.+.|+++++.+.|++.+..-
T Consensus 68 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 97 (388)
T 1w3b_A 68 EAYSNLGNVYKERGQLQEAIEHYRHALRLK 97 (388)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 356777888888888888888888777654
No 82
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.33 E-value=0.071 Score=46.68 Aligned_cols=94 Identities=11% Similarity=0.153 Sum_probs=66.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++.++...|++++|....++..+.-+ ++ .+++..-..+|...+++.++...|.++..... .+|..
T Consensus 242 ~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~ 307 (388)
T 1w3b_A 242 NLACVYYEQGLIDLAIDTYRRAIELQP-----HF-------PDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADS 307 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCS-----SC-------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHH
Confidence 678889999999999888887776411 11 23455667778888999999999999887632 12322
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
. ..=|.++...++|+.|...|-++.+-.
T Consensus 308 ~----~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 308 L----NNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp H----HHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred H----HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2 123566778889999999988887743
No 83
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.19 E-value=0.004 Score=44.97 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=80.4
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC-Cch
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI-PHP 174 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI-~~P 174 (253)
..++..++..|+|++|...+++..+..+. + .+++..-..+|...+++.++...|.++....... ..+
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 75 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPT-----N-------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDY 75 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCc-----c-------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhH
Confidence 47889999999999999999988876321 1 3556666778889999999999999999876553 334
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
...+.+-..=|.++...++|+.|..+|-++.+..
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 4456666667888999999999999999998843
No 84
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.13 E-value=0.078 Score=43.34 Aligned_cols=167 Identities=10% Similarity=0.040 Sum_probs=98.7
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh
Q 025427 6 AEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA 85 (253)
Q Consensus 6 ~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a 85 (253)
......++..++.++...|+++++.+.+++.+..- |..+..+ ..+-..+....+ .+.-.+...++++-.
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~-----~~la~~~~~~~~-----~~~A~~~~~~al~~~ 107 (275)
T 1xnf_A 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVF-----NYLGIYLTQAGN-----FDAAYEAFDSVLELD 107 (275)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHH-----HHHHHHHHHTTC-----HHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHH-----HHHHHHHHHccC-----HHHHHHHHHHHHhcC
Confidence 34567788999999999999999999999999876 5533322 222222221111 223344555555533
Q ss_pred hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
.+. ......++.+|...|++++|...+++..+..+. + .. ..+-..++...+++.++...|..+.
T Consensus 108 ~~~---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~-----~---~~-----~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 108 PTY---NYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-----D---PF-----RSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp TTC---THHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C---HH-----HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccc---cHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-----C---hH-----HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 322 123347899999999999999999998876322 1 11 1111223355688888888887776
Q ss_pred hhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 166 AIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 166 ~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.....- +...+. +.++...++++.|...|-++++
T Consensus 172 ~~~~~~--~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 172 EKSDKE--QWGWNI-----VEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HHSCCC--STHHHH-----HHHHTTSSCHHHHHHHHHHHCC
T ss_pred hcCCcc--hHHHHH-----HHHHHHhcCHHHHHHHHHHHhc
Confidence 543322 221111 1123344455566666555554
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=97.12 E-value=0.03 Score=45.79 Aligned_cols=32 Identities=13% Similarity=0.169 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAV 44 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v 44 (253)
++.+.+..+.+.|+++++.+.+++.+..- |.-
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~ 37 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDR 37 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCC
Confidence 45677888899999999999999998876 543
No 86
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.11 E-value=0.032 Score=40.04 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+...|+++++.+++++.+... +. +.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~-----------------------~~---------------------- 38 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PT-----------------------NM---------------------- 38 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT-----------------------CH----------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc-----------------------cH----------------------
Confidence 567889999999999999998887776543 21 00
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.....++.++...|+|++|...+++..+..+..+ ++ .....+++..-..+|..++++.++...|..+.....
T Consensus 39 --~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~- 110 (131)
T 1elr_A 39 --TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR--ED---YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR- 110 (131)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST--TC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc--hh---HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-
Confidence 1123568889999999999999999888754321 22 344577888888999999999999999999988643
Q ss_pred CCchhHHHHHHh
Q 025427 171 IPHPRIMGIIRE 182 (253)
Q Consensus 171 I~~P~i~g~I~e 182 (253)
.|.+.-.+..
T Consensus 111 --~~~~~~~l~~ 120 (131)
T 1elr_A 111 --TPDVLKKCQQ 120 (131)
T ss_dssp --CHHHHHHHHH
T ss_pred --CHHHHHHHHH
Confidence 3554444433
No 87
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.11 E-value=0.0097 Score=45.12 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
-.-.++..++..+...|+++++.+.+.+.+..-
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 43 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELN 43 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 455678899999999999999999999888765
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.05 E-value=0.045 Score=41.50 Aligned_cols=135 Identities=9% Similarity=0.002 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
-.++..++.++...|+++++.+++++.+... +.-+.. ...+...+....+ .+...+...++++......
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~-----~~~~a~~~~~~~~-----~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKV-----ATVLGLTYVQVQK-----YDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH-----HHHHHHHHHHHTC-----HHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH-----HHHHHHHHHHhcC-----HHHHHHHHHHHHhcCcHhH
Confidence 3577889999999999999999999998876 543222 2222222211111 1233344444444332221
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
.....++.++...|++++|...+++..+..+. + .+++..-..+|...+++.++...|..+.....
T Consensus 111 ---~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 111 ---NVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-----E-------GKVHRAIAFSYEQMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-----c-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 23357899999999999999999998877321 1 45677778889999999999999999987654
Q ss_pred c
Q 025427 170 A 170 (253)
Q Consensus 170 a 170 (253)
.
T Consensus 176 ~ 176 (186)
T 3as5_A 176 G 176 (186)
T ss_dssp C
T ss_pred C
Confidence 3
No 89
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=97.01 E-value=0.02 Score=57.34 Aligned_cols=165 Identities=12% Similarity=0.105 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
-.|+.+|+.++.++|+++++.+.|++.+..- |..+.++..-. ..+.. .+. .++-.+...++++-..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg-----~~l~~-~g~----~~eA~~~~~~Al~l~P~~- 76 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA-----SVLQQ-QGK----LQEALMHYKEAIRISPTF- 76 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH-----HHHHH-TTC----HHHHHHHHHHHHHHCTTC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH-----HHHHH-cCC----HHHHHHHHHHHHHhCCCC-
Confidence 3689999999999999999999999999887 76554433222 12211 111 223334444444432221
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
-..-..|+.+|.+.|++++|.+..++..+.-. + ..+.+..--.+|..++++.++.+.|.+|..+.-
T Consensus 77 --~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-----~-------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 77 --ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-----A-------FADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----C-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 22334799999999999999998888776511 1 245666667888999999999999999998764
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.- |.... .=|.++...+||+.|..+|-.+.+
T Consensus 143 ~~--~~a~~----~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DF--PDAYC----NLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CC--HHHHH----HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CC--hHHHh----hhhhHHHhcccHHHHHHHHHHHHH
Confidence 32 22211 114445666777777777665544
No 90
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.96 E-value=0.035 Score=48.33 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=71.5
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
....++.+|+..|++++|...++++.+.- + |+ .+..+...-..++...+++.++...|..+..... .+
T Consensus 132 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p---~~-----~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~ 199 (291)
T 3mkr_A 132 CMAMTVQILLKLDRLDLARKELKKMQDQD--E---DA-----TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PT 199 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T---TC-----HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c---Cc-----HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--Cc
Confidence 34477888888899999988888887761 1 11 1111111122444455778888888888876521 12
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHHHhccC
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~iL~~s 232 (253)
|. +-..=|..++..|+|+.|...|-++.+.. .+++. ++-.+..+....|.
T Consensus 200 ~~----~~~~la~~~~~~g~~~eA~~~l~~al~~~--p~~~~---~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 200 LL----LLNGQAACHMAQGRWEAAEGVLQEALDKD--SGHPE---TLINLVVLSQHLGK 249 (291)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHTTC
T ss_pred HH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHH---HHHHHHHHHHHcCC
Confidence 33 23334566778889999999988888743 23333 34444444444444
No 91
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=96.95 E-value=0.032 Score=53.40 Aligned_cols=143 Identities=11% Similarity=0.076 Sum_probs=103.9
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhhhhh--hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh----hhh-
Q 025427 17 VKLYYRLGKYKEMMDAYREMLTYIKSAVTR--NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK----NER- 89 (253)
Q Consensus 17 ~kl~~~~~~~~~~~~~~~~ll~~~~~~v~k--a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~----~er- 89 (253)
+.-+..+|+|+++..++++.+.-....++. ..+..+.+++-..+..... . ++...+..++++-.. .+.
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--~---~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--Y---EEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--H---HHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--H---HHHHHHHHHHHHHHHHHcCCCCH
Confidence 345678999999999999999887444443 3688888888877764221 1 233334444444211 222
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.-..+-.+||.+|...|+|++|..++++.++-....=| .| -....|+..+.-+.+..++-++.+-..|..||..+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~---Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PS---HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444449999999999999999999988887766655 34 56677888899999999999999999999998765
No 92
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.92 E-value=0.031 Score=44.82 Aligned_cols=116 Identities=13% Similarity=0.124 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.++..++..+++.|+++++.+.|++.+... +.-+.. ... . +.. ...
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~-------------------~~~--------~---~~~-~~~ 84 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEW-------------------DDQ--------I---LLD-KKK 84 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTC-------------------CCH--------H---HHH-HHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hccccc-------------------chh--------h---HHH-HHH
Confidence 34578899999999999999999999998876 432110 000 0 000 001
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.+-......++.+|+..|+|++|...++...+.-+ ++ .+++..-..+|..++++.++...|.++..+.
T Consensus 85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 85 NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK-----NN-------VKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-----cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 12233445789999999999999999988887621 11 3567777888999999999999999998874
No 93
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.89 E-value=0.041 Score=44.66 Aligned_cols=99 Identities=12% Similarity=0.106 Sum_probs=79.6
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc-hh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH-PR 175 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~ 175 (253)
.++.++...|+|++|...+++..+. ...-.+++..-..+|..++++.++...|.++......-+. ..
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 114 (228)
T 4i17_A 47 NCGVCADNIKKYKEAADYFDIAIKK------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEK 114 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHh------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4799999999999999988887754 1113567778888999999999999999999887544322 33
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
..+.+-..-|.++...++|+.|..+|-+|.+-
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 45566667788899999999999999999884
No 94
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.88 E-value=0.017 Score=54.00 Aligned_cols=168 Identities=13% Similarity=0.032 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 10 FKALKQTVKLYYRLGKY-KEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~-~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
-.++..++.++...|++ +++.+.|++.+..- |.-+.+.. .+-..+....+ .++-.+.+..+++-..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~-----~lg~~~~~~g~-----~~~A~~~~~~al~~~p~- 169 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWN-----QLGEVYWKKGD-----VTSAHTCFSGALTHCKN- 169 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHH-----HHHHHHHHHTC-----HHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHH-----HHHHHHHHcCC-----HHHHHHHHHHHHhhCCC-
Confidence 45778899999999999 99999999999876 65433222 22222221111 22333444444443322
Q ss_pred hhHHHHhhhHHHHHhhh---------cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh--------
Q 025427 89 RLWFKTNLKLCKIWFDM---------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-------- 151 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~---------~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-------- 151 (253)
-.....++.+|... |+|++|...+++..+.-+. + .+++..-..+|..+
T Consensus 170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-----D-------GRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHHHHTTCCH
T ss_pred ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHHHHhhcccc
Confidence 14445899999999 9999999999998886221 2 23444455566666
Q ss_pred cCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 152 KNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 152 ~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+++.++...|.+|..+....+ -.+..-..=|.++...++|+.|..+|-+|.+-
T Consensus 235 g~~~~A~~~~~~al~~~p~~~---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKAS---SNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGG---GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcc---cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 889999999999998743111 12233344467788899999999999999874
No 95
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.021 Score=51.24 Aligned_cols=185 Identities=11% Similarity=0.066 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHH--HHH----HHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCI--NNI----MDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i--~~i----ld~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
.++..++.+|.+.|+++++.+.+++.+... |..+..+..... +.. ......... ........++...+.++.
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~A~~~~~~ 325 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMY-GKRKLLELIGHAVAHLKK 325 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHhhHHHHHHHHHH
Confidence 456788999999999999999999998876 654332221111 111 111110011 111122223333333332
Q ss_pred hhhh-hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHH
Q 025427 85 AKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQK 163 (253)
Q Consensus 85 a~~e-rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~ 163 (253)
+... .........++.+|...|+|++|....++..+.-.. ++ . ...+. +.+-.-.++..++..++...|.+
T Consensus 326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~----~~-~-~~~~~--~~~~~~~~~~~~~~~~Ai~~y~k 397 (472)
T 4g1t_A 326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT----PV-A-KQLLH--LRYGNFQLYQMKCEDKAIHHFIE 397 (472)
T ss_dssp HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC----HH-H-HHHHH--HHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC----Ch-H-HHHHH--HHHHHHHHHHCCCHHHHHHHHHH
Confidence 2211 122223347899999999999999988887764211 11 1 11111 11111124567889999999999
Q ss_pred HHhhhccCCc-------------------hhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 164 ALAIKSAIPH-------------------PRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 164 a~~~~~aI~~-------------------P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
|..+....+. |..-- .-..=|.+|...|||++|..+|-.|.+
T Consensus 398 al~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~-~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 398 GVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE-ALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT-HHHHHHHHHHHHHHCC-----------
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8876433211 11100 111126778888999999999888877
No 96
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.86 E-value=0.16 Score=42.31 Aligned_cols=158 Identities=14% Similarity=0.083 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcC---CCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG---SASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~---~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
.|+..++.++...|+++++.+++++.+.-- + +. +...+-..+.. ..+ + .++-.+...++++-.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~--~~-----a~~~lg~~~~~g~~~~~-~---~~~A~~~~~~a~~~~-- 72 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-E--NS-----GCFNLGVLYYQGQGVEK-N---LKKAASFYAKACDLN-- 72 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C--HH-----HHHHHHHHHHHTSSSCC-C---HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-C--HH-----HHHHHHHHHHcCCCcCC-C---HHHHHHHHHHHHHCC--
Confidence 578899999999999999999999887721 1 11 12222222211 011 1 122223333333211
Q ss_pred hhhHHHHhhhHHHHHhh----hcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHHH
Q 025427 88 ERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQ 159 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~----~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk~ 159 (253)
.-.....++.+|.. .+++++|....+...+. ++ .+.+..=..+|.. .+|..++..
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------~~-------~~a~~~lg~~~~~~~~~~~~~~~A~~ 135 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-------KY-------AEGCASLGGIYHDGKVVTRDFKKAVE 135 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-------CC-------ccHHHHHHHHHHcCCCcccCHHHHHH
Confidence 11222367888888 88888888777766553 12 1333444455666 778888888
Q ss_pred HHHHHHhhhccCCchhHHHHHHhhccccccc----cccHHHHHHHHHHHhcc
Q 025427 160 LYQKALAIKSAIPHPRIMGIIRECGGKMHMA----ERQWADAATDFFEAFKN 207 (253)
Q Consensus 160 ~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~----ekdy~tA~s~F~EAFe~ 207 (253)
.|.+|.... +|...-. =|.++.. .+|+++|..+|-.|.+.
T Consensus 136 ~~~~a~~~~----~~~a~~~----lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 179 (273)
T 1ouv_A 136 YFTKACDLN----DGDGCTI----LGSLYDAGRGTPKDLKKALASYDKACDL 179 (273)
T ss_dssp HHHHHHHTT----CHHHHHH----HHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC----cHHHHHH----HHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 888887654 2221111 1333333 77888888888777653
No 97
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.85 E-value=0.056 Score=39.73 Aligned_cols=98 Identities=9% Similarity=0.054 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+++.|+++++.+.|++.+..- |.- .
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~-----------------------~---------------------- 38 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PED-----------------------A---------------------- 38 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------H----------------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC-----------------------h----------------------
Confidence 456778888888899988888887766553 221 0
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.....++.+|+..|+|++|....+...+.-+ ++ .+++..-..+|..++++.++...|.++..+.
T Consensus 39 --~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 --RGYSNRAAALAKLMSFPEAIADCNKAIEKDP-----NF-------VRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----Cc-------HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 0122466777778888888777777766511 11 3456666677777888888888888887765
No 98
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.83 E-value=0.044 Score=39.97 Aligned_cols=122 Identities=8% Similarity=-0.010 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++.+++..+.+.|+++++.+.+++++... |. ... .
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~----------------------~~~---------~------------- 38 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PN----------------------GVY---------T------------- 38 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SS----------------------STT---------H-------------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CC----------------------Ccc---------c-------------
Confidence 45678889999999999998887765443 21 000 0
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
-.....++.+++..|+|++|...++.+.+.-+ + .....+++..-..+|..+++..++...|..+......-
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p------~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 109 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYP------T---HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGS 109 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC------C---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC
Confidence 01123567788889999999988888877632 1 22345666666778888999999999999888764332
Q ss_pred Cc-hhHHHHHHhhcccc
Q 025427 172 PH-PRIMGIIRECGGKM 187 (253)
Q Consensus 172 ~~-P~i~g~I~e~~Gkl 187 (253)
+. +.....+....|.+
T Consensus 110 ~~~~~a~~~l~~l~~~~ 126 (129)
T 2xev_A 110 DAARVAQERLQSIRLGQ 126 (129)
T ss_dssp HHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 22 55666676666654
No 99
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.81 E-value=0.044 Score=39.62 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=30.9
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
..+.....++..++..+.+.|+++++.+.+++.+..-
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 46 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN 46 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3456778899999999999999999999998877654
No 100
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=96.80 E-value=0.023 Score=50.57 Aligned_cols=150 Identities=11% Similarity=0.137 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.++..++..+++.|+++++.+.|++.+... +..+. + .+ . . +....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------~---~~--~--------~------~~~~~ 192 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESS-------------F---SN--E--------E------AQKAQ 192 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCC-------------C---CS--H--------H------HHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hcccc-------------C---Ch--H--------H------HHHHH
Confidence 35678899999999999999999999999887 54321 0 01 0 0 00011
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.+.......++.+|+..|+|++|....++..+.-+. -.+.+..--.+|..++++.++...|.+|+.+.
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN------------NEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 233344558999999999999999999988887211 13566777888999999999999999999875
Q ss_pred ccCCchhHHHHHHhhccccccccccHHHHHH-HHHHHhcccc
Q 025427 169 SAIPHPRIMGIIRECGGKMHMAERQWADAAT-DFFEAFKNYD 209 (253)
Q Consensus 169 ~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s-~F~EAFe~yd 209 (253)
..- |. +...=|.++...++++.|.. .|-..|..+.
T Consensus 261 P~~--~~----a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 261 PNN--KA----AKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp SSC--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 332 22 22233455666777877733 3444454443
No 101
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.77 E-value=0.12 Score=42.20 Aligned_cols=167 Identities=10% Similarity=0.030 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++...|+++++.+.+++.+..- |.-+.+. ..+-..+....+ .+...+...++++...+...
T Consensus 78 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~-----~~la~~~~~~g~-----~~~A~~~~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 78 EVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAH-----LNRGIALYYGGR-----DKLAQDDLLAFYQDDPNDPF 146 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHH-----HHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHH-----HHHHHHHHHhcc-----HHHHHHHHHHHHHhCCCChH
Confidence 467889999999999999999999999876 5433322 222222221111 22334455555554333221
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
......+....|++++|...+++.....+.. . . ......++...++..++...+..+......
T Consensus 147 ----~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~-----~----~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 209 (275)
T 1xnf_A 147 ----RSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE----Q-----W----GWNIVEFYLGNISEQTLMERLKADATDNTS 209 (275)
T ss_dssp ----HHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC----S-----T----HHHHHHHHTTSSCHHHHHHHHHHHCCSHHH
T ss_pred ----HHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc----h-----H----HHHHHHHHHHhcCHHHHHHHHHHHhccccc
Confidence 1112334467799999999998887764321 1 1 112445566677777777777776544322
Q ss_pred CCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 171 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 171 I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. .|. .+..-..=|.++...|+|+.|..+|-++.+.
T Consensus 210 ~-~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 210 L-AEH-LSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp H-HHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred c-ccc-ccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 1 011 2445555688888999999999999999874
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.73 E-value=0.073 Score=40.33 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.+++..|..++++|+++++.+.|++.+..-
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~ 43 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD 43 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 467888999999999999999988877654
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.72 E-value=0.017 Score=46.15 Aligned_cols=113 Identities=11% Similarity=0.032 Sum_probs=82.8
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--- 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~--- 172 (253)
..++.+|+..|+|++|....++..+.-+. ..+++..-..+|..++++.++...|.++......-.
T Consensus 41 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 108 (213)
T 1hh8_A 41 FNIGCMYTILKNMTEAEKAFTRSINRDKH------------LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLID 108 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEE
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc------------chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHH
Confidence 36788899999999999999888876211 135667777889999999999999999998654422
Q ss_pred -------c-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHH
Q 025427 173 -------H-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 221 (253)
Q Consensus 173 -------~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LK 221 (253)
. |.. +.+...=|.++...++|+.|..+|-.+.+-..+.+......++.
T Consensus 109 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~ 164 (213)
T 1hh8_A 109 YKILGLQFKLFA-CEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAME 164 (213)
T ss_dssp CGGGTBCCEEEH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHH
T ss_pred HHHhccccCccc-hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHH
Confidence 2 322 34445557788899999999999999998765444343333333
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.72 E-value=0.018 Score=43.80 Aligned_cols=105 Identities=13% Similarity=0.198 Sum_probs=78.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.+++.|+..|+|++|....++..+.-+ ++ .+++..-..+|..++++.++...|.+|..+...- |.
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~- 82 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRDP-----EN-------AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IK- 82 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hH-
Confidence 578999999999999999988877621 11 4567777889999999999999999998874332 22
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHH
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 221 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LK 221 (253)
.-..=|.++...|+|+.|..+|-.+.+- ..+++.+...|.
T Consensus 83 ---a~~~lg~~~~~~~~~~~A~~~~~~al~l--~P~~~~a~~~l~ 122 (126)
T 4gco_A 83 ---GYIRKAACLVAMREWSKAQRAYEDALQV--DPSNEEAREGVR 122 (126)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcCCHHHHHHHH
Confidence 1223467788899999999999999883 235566655543
No 105
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.65 E-value=0.028 Score=43.78 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=79.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
+.+|.+|++.|+|++|.+.+++..+.-+ ++ .+++..=-.+|..++++.++...|.+|..+...- |.
T Consensus 35 ~~la~~y~~~~~~~~A~~~~~~al~~~p-----~~-------~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~ 100 (150)
T 4ga2_A 35 FYFAKLYYEAKEYDLAKKYICTYINVQE-----RD-------PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ--KD 100 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC--HH
Confidence 4789999999999999999988887721 11 4677777888999999999999999999875332 22
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHH-HhcccccccChhhHHHHHHHHHHHHhccC
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFE-AFKNYDEAGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~E-AFe~yde~g~~~a~~~LKYlvL~~iL~~s 232 (253)
. -..=|.++...+++..|..+|+| |.+ .+ .++|.. |.+.+.++...
T Consensus 101 ~----~~~la~~~~~~~~~~~aa~~~~~~al~-l~-P~~~~~-----~~l~~~ll~~~ 147 (150)
T 4ga2_A 101 L----VLKIAELLCKNDVTDGRAKYWVERAAK-LF-PGSPAV-----YKLKEQLLDCE 147 (150)
T ss_dssp H----HHHHHHHHHHHCSSSSHHHHHHHHHHH-HS-TTCHHH-----HHHHHHHHHTC
T ss_pred H----HHHHHHHHHHcCChHHHHHHHHHHHHH-hC-cCCHHH-----HHHHHHHHHHh
Confidence 2 12225667788899888888765 554 33 244544 44556665443
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=96.65 E-value=0.096 Score=41.59 Aligned_cols=143 Identities=17% Similarity=0.093 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++.+++..+...|+++++.+.+++.++ + .......+-..+....+ .+.-.+.+.++++...+.
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~---~------~~~~~~~lg~~~~~~g~-----~~~A~~~~~~al~~~~~~-- 70 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQD---P------HSRICFNIGCMYTILKN-----MTEAEKAFTRSINRDKHL-- 70 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSS---C------CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcC---C------ChHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHhCccc--
Confidence 3567889999999999999999987741 2 11222332222221111 223344455555433222
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCch----hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD----QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD----~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
......++.+|+..|+|++|...+++..+..+..+..+- ........+++..-..+|..++++.++...|.++..
T Consensus 71 -~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 71 -AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 223358899999999999999999888876543210000 001334568888888999999999999999999988
Q ss_pred hhcc
Q 025427 167 IKSA 170 (253)
Q Consensus 167 ~~~a 170 (253)
+...
T Consensus 150 ~~p~ 153 (213)
T 1hh8_A 150 MKSE 153 (213)
T ss_dssp TCCS
T ss_pred cCcc
Confidence 7654
No 107
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.59 E-value=0.023 Score=41.15 Aligned_cols=97 Identities=13% Similarity=0.108 Sum_probs=74.0
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
.-..++..++..|+|++|...+++..+.-+ ++ .+++..-..+|...+++.++...+.++...... +
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~ 83 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNP-----KD-------AKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--F 83 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-----TC-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----Cc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--c
Confidence 334789999999999999999888876511 11 456777788899999999999999999886432 2
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
|. +-..-|.++...++|+.|..+|-++.+-.
T Consensus 84 ~~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 84 IK----GYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hH----HHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 32 22334667888999999999999988743
No 108
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.55 E-value=0.27 Score=40.87 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q 025427 11 KALKQTVKLYYR----LGKYKEMMDAYREMLTY 39 (253)
Q Consensus 11 kAlkql~kl~~~----~~~~~~~~~~~~~ll~~ 39 (253)
.|+..++.++.. .++++++.+++++....
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 71 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL 71 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC
Confidence 467778888888 88888888888777654
No 109
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.55 E-value=0.043 Score=39.19 Aligned_cols=96 Identities=9% Similarity=0.029 Sum_probs=74.1
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
....++..++..|+|++|...+++..+..+. + .+++..-..+|...+++.++...|.++...... +
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~ 79 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPA-----N-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--Y 79 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--C
Confidence 3347899999999999999999988876221 1 456677778888999999999999999876322 2
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
|. +-..-|.++...++|+.|..+|-++.+-
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 SK----AYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 32 2344567788899999999999999875
No 110
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.53 E-value=0.14 Score=37.61 Aligned_cols=115 Identities=13% Similarity=0.038 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
-.++..++..++..|+++++.+.|++.+..- |.- .
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~-----------------------~--------------------- 43 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLV-----------------------A--------------------- 43 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------H---------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCc-----------------------H---------------------
Confidence 4577888999999999999999888777653 221 0
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
.....++.+++..|+|++|...++...+.-+. -.+++..-..+|..++++.++...|.++.....
T Consensus 44 ---~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 44 ---VYYTNRALCYLKMQQPEQALADCRRALELDGQ------------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch------------hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 01124677778888888888877777765211 134566667777888888888888888887654
Q ss_pred c--CC-chhHHHHHHhhc
Q 025427 170 A--IP-HPRIMGIIRECG 184 (253)
Q Consensus 170 a--I~-~P~i~g~I~e~~ 184 (253)
. .. .+.+...+..+.
T Consensus 109 ~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 109 EQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HTTCCCTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 4 22 366666665543
No 111
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.52 E-value=0.15 Score=39.45 Aligned_cols=36 Identities=19% Similarity=0.184 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
.-.-.++..++.++++.|+++++.+.|++.+..- +.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~ 43 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PA 43 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-Cc
Confidence 3455678899999999999999999999888766 43
No 112
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.48 E-value=0.12 Score=36.08 Aligned_cols=97 Identities=11% Similarity=0.072 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+...|+++++.+.+.+.+... |.- .
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----------------------~---------------------- 38 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHN-----------------------H---------------------- 38 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------H----------------------
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCc-----------------------H----------------------
Confidence 466777888888888888888777665543 210 0
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
.....++.+++..|+|++|...+++..+.-+. + .+++..-..+|..++++.++...|..+...
T Consensus 39 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 39 --VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-----W-------GKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-----c-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 01123455666677777777666666655211 1 234555556666677777777777766654
No 113
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.40 E-value=0.034 Score=41.00 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=75.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|....++..+.-+. + .+++..-..+|..++++.++...|.++..+... +|.
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~-----~-------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~ 78 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRNPL-----V-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVK 78 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhCcC-----c-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hHH
Confidence 37889999999999999999988887221 1 456777788899999999999999999886533 232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
....=|.++...++|+.|..+|-++.+-..+
T Consensus 79 ----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 79 ----AHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2333466777889999999999999886543
No 114
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.059 Score=39.61 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=81.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++..++..|+|++|....++..+.-+. + .+++..-..+|..++++.++...|.++..+...- |.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~- 73 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRAPE-----D-------ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VR- 73 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH-
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCC-----C-------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HH-
Confidence 6889999999999999999988877221 1 3677777888999999999999999999875332 22
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcccccc-cChhhHHHHHHHHHH
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQCLKYGFYL 226 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~~~a~~~LKYlvL~ 226 (253)
.-..=|.++...++|+.|..+|-++.+-.-+. +.|.-..+...+-.|
T Consensus 74 ---~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 74 ---AYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 22334677888899999999999998855322 224444444444433
No 115
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.079 Score=39.06 Aligned_cols=103 Identities=10% Similarity=0.104 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
...++..++..++..|+++++.+.|++.+... +.- .
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~-----------------------~-------------------- 62 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD-ATP-----------------------Q-------------------- 62 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC-CCH-----------------------H--------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc-ccc-----------------------h--------------------
Confidence 45678888999999999999988887776544 320 0
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
........++.+|...|+|++|...+++..+.-+ ++ .+++..-..+|..++++.++...|.++....
T Consensus 63 -~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 63 -DQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG-----GD-------VKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-----CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc-----cC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 0011223567778888888888887777766511 11 3556666677788888888888888887654
No 116
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=96.35 E-value=0.049 Score=50.67 Aligned_cols=149 Identities=12% Similarity=0.169 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
-.+++.++..+++.|+++++...|++.+.+. +..+. + ..+ .+.....
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~-------------~------~~~-------------~~~~~~~ 314 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYG-------------L------SEK-------------ESKASES 314 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCS-------------C------CHH-------------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-ccccc-------------C------ChH-------------HHHHHHH
Confidence 4578899999999999999999999999887 54321 0 000 0001122
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
+.......++..|+..|+|++|+...++..+.- . . -.+.+..--.+|..++++.++...|.+|+.+..
T Consensus 315 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-------p---~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 315 FLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-------S---A--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------T---T--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------C---c--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 344455689999999999999999998888762 1 1 145677778899999999999999999998753
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHH-Hhcccc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFE-AFKNYD 209 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~E-AFe~yd 209 (253)
.-.. +...-|.++...++++.|....|. .|..+.
T Consensus 383 ~~~~------a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~ 417 (457)
T 1kt0_A 383 QNKA------ARLQISMCQKKAKEHNERDRRIYANMFKKFA 417 (457)
T ss_dssp ---C------HHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3222 122223445566677776655443 344443
No 117
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.34 E-value=0.048 Score=42.26 Aligned_cols=96 Identities=7% Similarity=0.047 Sum_probs=75.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|....++..+.-.. + .+++..-..+|..++++.++...|.++..+...- |.
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 80 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSIAPA-----N-------PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SK 80 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc-----C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HH
Confidence 47899999999999999999998887321 1 4667777889999999999999999999875332 22
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
.-..=|.++...++|+.|..+|-++.+-..
T Consensus 81 ----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 81 ----AWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 222336778889999999999999998554
No 118
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.31 E-value=0.021 Score=42.33 Aligned_cols=99 Identities=10% Similarity=-0.031 Sum_probs=75.8
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++..+++.|+|++|....++..+..+ + .....+++..-..+|...+++.++...|.++...... +|
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~ 99 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDA------T---PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--DV 99 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCC------C---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--CH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcc------c---chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--CH
Confidence 34789999999999999999988876521 1 2234677777788899999999999999999886322 23
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
. +...-|.++...++|+.|...|-++.+-.
T Consensus 100 ~----~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 100 K----ALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp H----HHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred H----HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2 22344677888999999999999998743
No 119
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.29 E-value=0.23 Score=46.15 Aligned_cols=140 Identities=11% Similarity=0.124 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcch----hHHHHHHHHHHHHHHHhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNF----SLLREFYQTTLKALEEAK 86 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~----~~l~~~y~~~~e~i~~a~ 86 (253)
.++..++.+|.+.|+++++.+.|++.+..- |. . .....+-..+........ .-.++-.+...++++-..
T Consensus 138 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~-~-----~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p 210 (474)
T 4abn_A 138 EAWNQLGEVYWKKGDVTSAHTCFSGALTHC-KN-K-----VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV 210 (474)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-CC-H-----HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-H-----HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999998876 54 1 333333333322100011 122344445555554333
Q ss_pred hh-hhHHHHhhhHHHHHhhh--------cchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHH
Q 025427 87 NE-RLWFKTNLKLCKIWFDM--------GEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKL 157 (253)
Q Consensus 87 ~e-rl~lk~~lkLa~l~l~~--------~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~kl 157 (253)
+. ..| ..++.+|+.. |+|++|...+++..+.-+. .....+++..=..+|..++++.++
T Consensus 211 ~~~~~~----~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 211 LDGRSW----YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK---------ASSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp TCHHHH----HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG---------GGGCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHH----HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC---------cccCHHHHHHHHHHHHHcCCHHHH
Confidence 32 233 4688888888 9999999999888876221 112346677777889999999999
Q ss_pred HHHHHHHHhhhcc
Q 025427 158 KQLYQKALAIKSA 170 (253)
Q Consensus 158 k~~y~~a~~~~~a 170 (253)
...|.+|..+...
T Consensus 278 ~~~~~~al~l~p~ 290 (474)
T 4abn_A 278 LEGFSQAAALDPA 290 (474)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCCC
Confidence 9999999987544
No 120
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=96.28 E-value=0.053 Score=49.31 Aligned_cols=116 Identities=14% Similarity=0.125 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
-.+++.++..+++.|+++++.+.|++.+.+. +..+. . .. . + ++...+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~-~~~~~------------~----~~--~-------~------~~~~~~~ 270 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV-EGSRA------------A----AE--D-------A------DGAKLQP 270 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHHH------------H----SC--H-------H------HHGGGHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-hcCcc------------c----cC--h-------H------HHHHHHH
Confidence 4568899999999999999999999999988 44320 0 00 0 0 0111112
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
........+|.+|+..|+|++|....++..+.-+ + -.+++..-..+|..++++.++...|.+|..+..
T Consensus 271 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P 338 (370)
T 1ihg_A 271 VALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP------S------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP 338 (370)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT------T------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc------h------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 2333445789999999999999988888876511 1 145666777889999999999999999988753
No 121
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.27 E-value=0.034 Score=39.08 Aligned_cols=94 Identities=12% Similarity=0.064 Sum_probs=72.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|...+++..+.-+. + .+++..-..+|...+++.++...+.++...... +|.
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 73 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPH-----N-------HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WGK 73 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCC-----c-------HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cHH
Confidence 37889999999999999999988876221 1 456667778889999999999999999876432 232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+-..=|.++...++|+.|...|-++.+-
T Consensus 74 ----~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 74 ----GYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----HHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 2233456677889999999999888874
No 122
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.24 E-value=0.03 Score=39.08 Aligned_cols=97 Identities=6% Similarity=0.004 Sum_probs=74.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++.+++..|+|++|....++..+.-+. + .+++..-..+|...+++.++...|.++......-.+|.
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 77 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPE-----E-------SKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKD 77 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcC-----C-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHH
Confidence 47899999999999999999988876321 1 24566677888999999999999999988754311232
Q ss_pred HHHHHHhhcccccccc-ccHHHHHHHHHHHhccc
Q 025427 176 IMGIIRECGGKMHMAE-RQWADAATDFFEAFKNY 208 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~e-kdy~tA~s~F~EAFe~y 208 (253)
+...-|.++... ++|+.|..+|-++.+..
T Consensus 78 ----~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 78 ----VWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp ----HHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred ----HHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 233446778888 99999999998887654
No 123
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.23 E-value=0.33 Score=42.00 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHh-hhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEA-KNER 89 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a-~~er 89 (253)
.+..-+++.|...|++++++..++.. .+.....++.+.+.+....+ .+...+...+.+... ..+.
T Consensus 35 e~~~~l~r~yi~~g~~~~al~~~~~~---------~~~~~~a~~~la~~~~~~~~-----~~~A~~~l~~ll~~~~~P~~ 100 (291)
T 3mkr_A 35 ERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQAVRMFAEYLASHSR-----RDAIVAELDREMSRSVDVTN 100 (291)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHSCTT---------SCHHHHHHHHHHHHHHCSTT-----HHHHHHHHHHHHHSCCCCSC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHhccc---------CChhHHHHHHHHHHHcCCCc-----HHHHHHHHHHHHhcccCCCC
Confidence 35556788999999999988765441 11234566677777764332 123334444444321 1111
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
. ...+.++.++...|++++|++.+++ + ++ .+++..-.++|..+++..++...|.++....
T Consensus 101 ~--~~~~~la~~~~~~g~~~~Al~~l~~-------~---~~-------~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~- 160 (291)
T 3mkr_A 101 T--TFLLMAASIYFYDQNPDAALRTLHQ-------G---DS-------LECMAMTVQILLKLDRLDLARKELKKMQDQD- 160 (291)
T ss_dssp H--HHHHHHHHHHHHTTCHHHHHHHHTT-------C---CS-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred H--HHHHHHHHHHHHCCCHHHHHHHHhC-------C---CC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 1 1246889999999999999988876 2 22 4678888899999999999999999998874
Q ss_pred cCCc-h--hH-HHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 170 AIPH-P--RI-MGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 170 aI~~-P--~i-~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
|. + .+ .|-+.. ....++|+.|...|-++-+.+
T Consensus 161 --p~~~~~~l~~a~~~l-----~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 161 --EDATLTQLATAWVSL-----AAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp --TTCHHHHHHHHHHHH-----HHCTTHHHHHHHHHHHHHHHS
T ss_pred --cCcHHHHHHHHHHHH-----HhCchHHHHHHHHHHHHHHhC
Confidence 32 2 11 233333 234589999999999988763
No 124
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=96.19 E-value=0.2 Score=35.47 Aligned_cols=94 Identities=14% Similarity=0.191 Sum_probs=69.4
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..+...|++++|...+++..+.-+ ++ .+++..-..++...+++.++...+.++...... +|.
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 70 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDP-----RS-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAE 70 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCC-----cc-------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chH
Confidence 3678899999999999999988876521 11 234555577788889999999999998875422 232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
. ...-|.++...++|+.|...|-++.+.
T Consensus 71 ~----~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 71 A----WYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp H----HHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2 223467788899999999999888874
No 125
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.17 E-value=0.088 Score=39.62 Aligned_cols=95 Identities=13% Similarity=0.048 Sum_probs=73.3
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|....++..+.-+. + .+++..-..+|...+++.++...|.++...... +|.
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~~~~-----~-------~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~~ 82 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIELNPS-----N-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIK 82 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-----C-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHH
Confidence 37889999999999999999988876211 1 456667778889999999999999999887432 232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.-..-|.++...++|+.|..+|-++.+-.
T Consensus 83 ----~~~~~a~~~~~~~~~~~A~~~~~~a~~~~ 111 (166)
T 1a17_A 83 ----GYYRRAASNMALGKFRAALRDYETVVKVK 111 (166)
T ss_dssp ----HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 22334666788899999999999998754
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.09 E-value=0.11 Score=40.36 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=73.0
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
...++..++..|+|++|...++.+.+.-+. + .+++..--.+|..++++.++...|.+|..+...- |
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~--~ 89 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHY-----D-------SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXE--P 89 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--T
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcc-----c-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--c
Confidence 346899999999999999999988876211 1 2445555678889999999999999998875332 3
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
... ..-|.++...|+++.|..+|-.+.+-.
T Consensus 90 ~~~----~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 90 RFP----FHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH----HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHH----HHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 322 223677888999999999998888754
No 127
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.98 E-value=0.095 Score=39.82 Aligned_cols=95 Identities=15% Similarity=0.085 Sum_probs=72.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|...++++.+.-+ ++ .+++..--.+|..++++.++...|.+|..+...- |.
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 87 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDH-----YD-------ARYFLGLGACRQSLGLYEQALQSYSYGALMDINE--PR 87 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC--cH
Confidence 4788999999999999999998887621 12 2445555678889999999999999998875432 33
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.. ..-|.++...|+|+.|...|-.+.+-.
T Consensus 88 ~~----~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 88 FP----FHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HH----HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22 234667888999999999999888754
No 128
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.98 E-value=0.24 Score=34.74 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN 87 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~ 87 (253)
+.-.++..++..+...|+++++.+.+.+.+... +.- .
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~-----------------------~------------------- 43 (125)
T 1na0_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNN-----------------------A------------------- 43 (125)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-----------------------H-------------------
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCc-----------------------H-------------------
Confidence 345677888999999999999988887776543 210 0
Q ss_pred hhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 88 ERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 88 erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
. ....++.++...|++++|...+++..+.-+ ++ .+++..-..+|...+++.++...|.++...
T Consensus 44 -~----~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 44 -E----AWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -H----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -H----HHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 0 012356666677777777777766665411 11 133444456666777777777777777655
Q ss_pred h
Q 025427 168 K 168 (253)
Q Consensus 168 ~ 168 (253)
.
T Consensus 107 ~ 107 (125)
T 1na0_A 107 D 107 (125)
T ss_dssp C
T ss_pred C
Confidence 3
No 129
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.96 E-value=0.33 Score=45.54 Aligned_cols=139 Identities=12% Similarity=-0.023 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++.+.|+++++.+.|++.+..- +.-+.+. ..+-..+... +. .++-.+...++++-..+.
T Consensus 24 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~-----~~lg~~~~~~-g~----~~~A~~~~~~al~~~p~~-- 90 (568)
T 2vsy_A 24 VAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAV-----ARLGRVRWTQ-QR----HAEAAVLLQQASDAAPEH-- 90 (568)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHH-----HHHHHHHHHT-TC----HHHHHHHHHHHHHHCTTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH-----HHHHHHHHHC-CC----HHHHHHHHHHHHhcCCCC--
Confidence 578899999999999999999999999876 5433222 2222222211 11 223344555555533332
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh---cCHHHHHHHHHHHHhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET---KNNKKLKQLYQKALAI 167 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~---~n~~klk~~y~~a~~~ 167 (253)
-.....++.+|...|++++|...+++..+.-.. + .+++..-..+|..+ ++..++.+.|.++...
T Consensus 91 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 91 -PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-----E-------PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C-------HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 122347899999999999999999888876221 1 24556667778888 9999999999999987
Q ss_pred hccCCchh
Q 025427 168 KSAIPHPR 175 (253)
Q Consensus 168 ~~aI~~P~ 175 (253)
...-..|.
T Consensus 158 ~p~~~~~~ 165 (568)
T 2vsy_A 158 GVGAVEPF 165 (568)
T ss_dssp TCCCSCHH
T ss_pred CCcccChH
Confidence 76654443
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=95.96 E-value=0.35 Score=37.41 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
.++..++.++...|+++++.+.|++.+..-
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 74 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR 74 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 356667777777777777777777766655
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.89 E-value=0.28 Score=34.71 Aligned_cols=36 Identities=8% Similarity=0.112 Sum_probs=28.7
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
...-...++..++..+...|+++++.+.+++.+..-
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 42 (131)
T 2vyi_A 7 EDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN 42 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 344456788899999999999999999888777653
No 132
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.85 E-value=0.37 Score=36.37 Aligned_cols=100 Identities=11% Similarity=0.039 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNER 89 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~er 89 (253)
..++..++..+.+.|+++++.+.+++.+..- |.-+.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~------------------------------------------- 53 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDAR------------------------------------------- 53 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH-------------------------------------------
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHH-------------------------------------------
Confidence 4567788889999999999988887666543 32111
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
.| ..++.+|...|+|++|....+...+.-+. + .+++..-..+|..++++.++...|.+++.+..
T Consensus 54 ~~----~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 54 YF----LGLGACRQSLGLYEQALQSYSYGALMDIN-----E-------PRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HH----HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHhhHHHHHHHHHHHHhcCCC-----C-------cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 11 13556666677777777666666655111 1 12344445566667777777777777766554
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=95.80 E-value=0.067 Score=47.98 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 8 WGFKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 8 w~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+.=..+..|+.++..+|+++++++.|++.+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~ 81 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 333456789999999999999999999988876
No 134
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.80 E-value=0.029 Score=43.49 Aligned_cols=105 Identities=11% Similarity=0.089 Sum_probs=77.9
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCC----Cchh--hhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDG----TDDQ--KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~----~dD~--~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.++..++..|+|.+|....++..+.+..... +++. ........++.--..+|..++++.++...+.+|..+...
T Consensus 16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~ 95 (162)
T 3rkv_A 16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREET 95 (162)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc
Confidence 7899999999999999888888777543211 0110 013455678888889999999999999999999987422
Q ss_pred CCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 171 IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 171 I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|. .-..-|..+...|+|+.|..+|-.+.+-
T Consensus 96 --~~~----a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 96 --NEK----ALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp --CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chH----HHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 122 2223477788899999999999999884
No 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.77 E-value=0.099 Score=36.87 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=70.5
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..+...|++++|...+++..+.-+ ++ .+++..-..+|...+++.++...+.++...... +|.
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~ 78 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAE 78 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCc-----Cc-------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHH
Confidence 3688899999999999999998887621 11 245556677888999999999999998875321 232
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.. ..=|.++...++|+.|...|-++.+.
T Consensus 79 ~~----~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 79 AW----YNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HH----HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 22 23366778889999999999888874
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.70 E-value=0.14 Score=40.83 Aligned_cols=106 Identities=16% Similarity=0.053 Sum_probs=78.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCc----hhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD----DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~d----D~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
..++..++..|+|++|....++..+..+..+... +.....+..+++..-..+|..++++.++...+.++..+...
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~- 120 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN- 120 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-
Confidence 4789999999999999999999988765432100 01112334577778888899999999999999999987322
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|. .-..-|.++...++|+.|..+|-++.+-
T Consensus 121 -~~~----~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 121 -NVK----ALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp -CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -cHH----HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 132 2233477788999999999999998874
No 137
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=95.67 E-value=0.05 Score=48.50 Aligned_cols=152 Identities=10% Similarity=0.056 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
.-.+++.++..+++.|+++++...|++.+.+. +.-. . +. ..+ . ..+.+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~----------~---~~-~~~-------~----~~~~~~----- 226 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM-GDDF----------M---FQ-LYG-------K----YQDMAL----- 226 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS-CHHH----------H---HT-CCH-------H----HHHHHH-----
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh-ccch----------h---hh-hcc-------c----HHHHHH-----
Confidence 34568899999999999999999999998887 4321 0 00 000 0 001100
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.+.......++.+|+..|+|++|....+...+.-+ + -.+.+..-..+|..++++.++...|.+|..+.
T Consensus 227 ~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p------~------~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 227 AVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE------K------NPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT------T------CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 01112345899999999999999999988887621 1 13566777788999999999999999998765
Q ss_pred ccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 169 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 169 ~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
.. +|.+.-.+. -......++++.|...|..+|+..
T Consensus 295 p~--~~~a~~~L~---~l~~~~~~~~~~a~~~~~~~l~~~ 329 (338)
T 2if4_A 295 PD--DKAIRRELR---ALAEQEKALYQKQKEMYKGIFKGK 329 (338)
T ss_dssp ----------------------------------------
T ss_pred CC--CHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhCCC
Confidence 32 233222222 122345667778888888887754
No 138
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.66 E-value=0.0079 Score=42.80 Aligned_cols=90 Identities=13% Similarity=0.037 Sum_probs=65.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|+|++|....++..+.-+. + .+++..-..+|..++++.++...|.++..+...-..|.
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITAQPQ-----N-------PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----C-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHH
Confidence 36899999999999999999988876221 1 35666777888999999999999999998765554455
Q ss_pred HHHHHHhhccccccccccHHHH
Q 025427 176 IMGIIRECGGKMHMAERQWADA 197 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA 197 (253)
..+.+...-|..+...++++.|
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHHHhHhhh
Confidence 5555555555555555555444
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=95.66 E-value=0.7 Score=37.64 Aligned_cols=181 Identities=10% Similarity=0.086 Sum_probs=107.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.|...++.+|...++++++.++|+.....= -..+...+=..+.. .+.+.+ .++-.+....+++. -
T Consensus 19 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--------~~~a~~~lg~~y~~-~g~~~~-~~~A~~~~~~A~~~-----g 83 (212)
T 3rjv_A 19 RAQYYLADTWVSSGDYQKAEYWAQKAAAQG--------DGDALALLAQLKIR-NPQQAD-YPQARQLAEKAVEA-----G 83 (212)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--------CHHHHHHHHHHTTS-STTSCC-HHHHHHHHHHHHHT-----T
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHc-CCCCCC-HHHHHHHHHHHHHC-----C
Confidence 578889999999999999999999876532 11233333333333 221100 12223333333221 1
Q ss_pred HHHHhhhHHHHHhh----hcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHHHHHH
Q 025427 91 WFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQ 162 (253)
Q Consensus 91 ~lk~~lkLa~l~l~----~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk~~y~ 162 (253)
.-.....|+.+|.+ .+++.+|....+...+. . + ..-..+.+..=-.+|.. .+|..++...|.
T Consensus 84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~----~---~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---S----E---SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---T----T---SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---C----C---CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 12233488999998 89999998776655432 2 1 00122333333455666 689999999999
Q ss_pred HHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHH
Q 025427 163 KALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLK 221 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LK 221 (253)
+|.........-.-.|.+-+.|.- =..++|+++|..+|-.|-+ .|++.+...|.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~g-g~~~~d~~~A~~~~~~A~~----~g~~~A~~~l~ 207 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEK-GFIEPNKQKALHWLNVSCL----EGFDTGCEEFD 207 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBT-TTBCCCHHHHHHHHHHHHH----HTCHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHH----cCCHHHHHHHH
Confidence 997762221123345555444310 0026699999999999876 38887776654
No 140
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.57 E-value=0.15 Score=48.64 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=97.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP--- 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~--- 172 (253)
+..+.-+-..|+|++|..+.++.++..++.=| ++ -...+.++.-=..+|..++++.++...|.+|+.+.-.++
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg-~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~ 388 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFA-DT---NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN 388 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBC-TT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence 35566677899999999999998888776654 34 566788888888999999999999999999999887764
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cC--hhhHHHHHH
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GN--QRRIQCLKY 222 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~--~~a~~~LKY 222 (253)
||.+-....-.| .+|...|+|+.|...+-+|.+-+... |. |.-...+.-
T Consensus 389 Hp~~a~~l~nLa-~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 389 NAQLGMAVMRAG-LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp CHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHH-HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 688766666665 56788899999999999999988876 64 544444433
No 141
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.53 E-value=0.12 Score=35.81 Aligned_cols=98 Identities=12% Similarity=0.109 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++..++.++.+.|+++++.+.+++.+..- +.- . ..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~-----------------------~--------------------~~- 42 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEE-----------------------S--------------------KY- 42 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCC-----------------------H--------------------HH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCC-----------------------H--------------------HH-
Confidence 34567888999999999888887766543 210 0 01
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHhh
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKLKQLYQKALAI 167 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-~n~~klk~~y~~a~~~ 167 (253)
...++.++...|+|++|...+++..+.... ..-.+++..-..+|..+ +++.++...++.+...
T Consensus 43 ---~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 43 ---WLMKGKALYNLERYEEAVDCYNYVINVIED----------EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---HHHHHHHHHHccCHHHHHHHHHHHHHhCcc----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 125677777888888888777777665211 11235566667777888 8888888888777543
No 142
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=95.37 E-value=0.13 Score=41.80 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=70.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHH----------------HHHHHHhhcCHHHHHH
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAI----------------EIQMYTETKNNKKLKQ 159 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~l----------------E~~~y~~~~n~~klk~ 159 (253)
+..+..+++.|+|++|....++..+.-+. + .+++.. --.+|...+++.++..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID-----R-------TEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH-----H-------HHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C-------hHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 46788999999999999999988876211 1 233333 5678889999999999
Q ss_pred HHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 160 LYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 160 ~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.|.++..+...- |.. -..=|.++...|+|+.|...|-.+.+-
T Consensus 76 ~~~~al~~~p~~--~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 76 FYKELLQKAPNN--VDC----LEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHCTTC--HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCC--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 999998875321 222 122267788899999999999999873
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.32 E-value=0.1 Score=39.14 Aligned_cols=94 Identities=6% Similarity=-0.022 Sum_probs=72.0
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..++..|++++|...+++..+.-+. -.+.+..--.++...++..++...|.+|..+.-. +|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~ 86 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIA 86 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH
Confidence 47889999999999999999888876211 1456777778888999999999999999887533 222
Q ss_pred HHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
....=|.++...|+|+.|...|-++.+-
T Consensus 87 ----~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 87 ----VHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2233466678889999999998888763
No 144
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.21 E-value=0.27 Score=48.14 Aligned_cols=164 Identities=10% Similarity=0.055 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++.++.+.|+++++.+.+++.+..- |.-..++..... +-.-. + + .++-.+...++++-..+.-
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~---~~~~~---g-~---~~~A~~~~~~al~l~P~~~- 501 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAV---AELLT---G-D---YDSATKHFTEVLDTFPGEL- 501 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHH---HHHHH---T-C---HHHHHHHHHHHHHHSTTCS-
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHH---HHHHc---C-C---HHHHHHHHHHHHHhCCCCh-
Confidence 467788999999999999999999999876 654444433332 11110 1 1 1233344444444333321
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.....++.+|...|+|++ ....++..+.-. + -.+.+..--.+|..++++.++.+.|.+|..+...
T Consensus 502 --~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-----~-------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 566 (681)
T 2pzi_A 502 --APKLALAATAELAGNTDE-HKFYQTVWSTND-----G-------VISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH 566 (681)
T ss_dssp --HHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-----T-------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT
T ss_pred --HHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-----c-------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc
Confidence 222488999999999999 877777776511 1 1346666778889999999999999988765432
Q ss_pred CCc-hhHHHHHHhhccccc-cccccHHHHHHHH
Q 025427 171 IPH-PRIMGIIRECGGKMH-MAERQWADAATDF 201 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~-~~ekdy~tA~s~F 201 (253)
-+. -.-.|.+...+|... +.+++++.|...+
T Consensus 567 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l 599 (681)
T 2pzi_A 567 FTTARLTSAVTLLSGRSTSEVTEEQIRDAARRV 599 (681)
T ss_dssp HHHHHHHHHHHTC-------CCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHH
Confidence 111 122344444444321 2245566666543
No 145
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.13 E-value=0.3 Score=37.72 Aligned_cols=60 Identities=5% Similarity=-0.044 Sum_probs=34.5
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHH-HHHHHHHHHhhh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK-LKQLYQKALAIK 168 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~k-lk~~y~~a~~~~ 168 (253)
.++.+|...|++++|....+...+.-+ ++ .+++.-=..+|...++.++ ++..+.+|..+.
T Consensus 70 ~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~ 130 (150)
T 4ga2_A 70 FLGLLYELEENTDKAVECYRRSVELNP-----TQ-------KDLVLKIAELLCKNDVTDGRAKYWVERAAKLF 130 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC
Confidence 567777777777777766666665411 11 2344444556666776654 344456666654
No 146
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.09 E-value=0.19 Score=39.90 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=74.5
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
-..++..+++.|+|++|....+.+.+.-+ ++ .+.+..--.+|..++++.++...|.+|..+...-+.+
T Consensus 39 ~~~lg~~~~~~g~~~eA~~~~~~al~~~P-----~~-------~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~ 106 (151)
T 3gyz_A 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDF-----YN-------VDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTP 106 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHH
Confidence 34789999999999999999999887721 11 3355556678899999999999999999887553332
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
. ..=|..+...|+|+.|..+|-.|.+-.
T Consensus 107 ~------~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 V------FHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp H------HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H------HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 1 223566778899999999999998854
No 147
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.06 E-value=0.89 Score=38.94 Aligned_cols=32 Identities=6% Similarity=0.100 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
.++..++..+.+.|+++++.+.|++.+..- |.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~ 149 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQ 149 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TS
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-Cc
Confidence 356678888889999999999999888766 54
No 148
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.05 E-value=0.25 Score=49.34 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.|+.+++.+|.++|+++++.+.|++.+..- |.-+.++. ++=..+....+ .++-.+...++++-..+
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~-----nLg~~l~~~g~-----~~~A~~~~~kAl~l~P~--- 109 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYS-----NMGNTLKEMQD-----VQGALQCYTRAIQINPA--- 109 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH-----HHHHHHHHTTC-----HHHHHHHHHHHHHHCTT---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHHcCC-----HHHHHHHHHHHHHhCCC---
Confidence 578899999999999999999999999876 76544333 22222221111 22333444444443222
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.......++.+|.+.|++++|....++..+.-. ++ .+++.--..+|..++++..+.+.|.++..+.
T Consensus 110 ~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-----~~-------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-----DF-------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----CC-------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhC
Confidence 122335799999999999999998888877621 11 3455556678889999999999999988764
No 149
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.00 E-value=0.29 Score=45.93 Aligned_cols=156 Identities=8% Similarity=-0.021 Sum_probs=83.0
Q ss_pred hCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHHHH
Q 025427 23 LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCKIW 102 (253)
Q Consensus 23 ~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~l~ 102 (253)
.|+++++.+.+++.+..- +.-..+.. .+-..+.. .+ + .++-.+...++++-..+. ......++.+|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~-----~lg~~~~~-~g-~---~~~A~~~~~~al~~~p~~---~~~~~~lg~~~ 67 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWL-----MLADAELG-MG-D---TTAGEMAVQRGLALHPGH---PEAVARLGRVR 67 (568)
T ss_dssp --------------------CCHHHHH-----HHHHHHHH-HT-C---HHHHHHHHHHHHTTSTTC---HHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHH-----HHHHHHHH-cC-C---HHHHHHHHHHHHHhCCCC---HHHHHHHHHHH
Confidence 367788888888777665 43222221 11111111 01 1 123333444444432222 22335789999
Q ss_pred hhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHh
Q 025427 103 FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRE 182 (253)
Q Consensus 103 l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e 182 (253)
...|+|++|...+++..+.-+ ++ .+++..-..+|...+++.++...|.++......- |.. ..
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~----~~ 129 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAP-----EH-------PGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE--PYI----TA 129 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH----HH
T ss_pred HHCCCHHHHHHHHHHHHhcCC-----CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH----HH
Confidence 999999999999988887621 11 3456666788999999999999999998875322 222 12
Q ss_pred hcccccccc---ccHHHHHHHHHHHhccccc
Q 025427 183 CGGKMHMAE---RQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 183 ~~Gkl~~~e---kdy~tA~s~F~EAFe~yde 210 (253)
.=|.++... ++++.|..+|-++.+....
T Consensus 130 ~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 130 QLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 224445566 8999999999998875443
No 150
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.86 E-value=0.4 Score=37.08 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=78.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH-HHhhcCH--HHHHHHHHHHHhhhccCC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNN--KKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~-y~~~~n~--~klk~~y~~a~~~~~aI~ 172 (253)
..++.+|+..|+|++|....++..+.-+. + .+++..-..+ |...+++ .++...|.++......
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~-- 113 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQLRGE-----N-------AELYAALATVLYYQASQHMTAQTRAMIDKALALDSN-- 113 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHCS-----C-------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----C-------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--
Confidence 47899999999999999999998877321 1 2344445556 6778888 9999999999876422
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHH
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLH 227 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~ 227 (253)
+|. ....-|.++...++|+.|..+|-++.+-.. +++.+...+..+--++
T Consensus 114 ~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~i~~~~ 162 (177)
T 2e2e_A 114 EIT----ALMLLASDAFMQANYAQAIELWQKVMDLNS--PRINRTQLVESINMAK 162 (177)
T ss_dssp CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHTCC--TTSCHHHHHHHHHHHH
T ss_pred cHH----HHHHHHHHHHHcccHHHHHHHHHHHHhhCC--CCccHHHHHHHHHHHH
Confidence 132 223346778889999999999999998654 3344445444443333
No 151
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=94.76 E-value=0.13 Score=44.33 Aligned_cols=94 Identities=10% Similarity=0.068 Sum_probs=73.2
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.++..++..|+|++|....++..+.-+ ++ .+++..-..+|..++++.++...|.+|..+... +|..
T Consensus 9 ~~g~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 74 (281)
T 2c2l_A 9 EQGNRLFVGRKYPEAAACYGRAITRNP-----LV-------AVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKA 74 (281)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCS-----CC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHHH
Confidence 688999999999999999998888621 12 356777788899999999999999999876321 1221
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
-..=|..+...|+|+.|..+|-++.+-.
T Consensus 75 ----~~~lg~~~~~~g~~~~A~~~~~~al~l~ 102 (281)
T 2c2l_A 75 ----HFFLGQCQLEMESYDEAIANLQRAYSLA 102 (281)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2233777888999999999999998754
No 152
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=94.67 E-value=1.1 Score=34.45 Aligned_cols=102 Identities=11% Similarity=0.028 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
...++..++..+.+.|+++++.+.++..+..- |.-+
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~------------------------------------------- 55 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDS------------------------------------------- 55 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH-------------------------------------------
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccH-------------------------------------------
Confidence 35567788888999999998888877665433 2111
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..| ..++.++...|+|++|....+...+.-+ ++ .+++..=..+|..++++.++...|.++..+.
T Consensus 56 ~~~----~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 56 RFF----LGLGACRQAMGQYDLAIHSYSYGAVMDI-----XE-------PRFPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHH----HHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC-------chHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 112 2356667777777777777776665521 11 1233344556667777777777777777665
Q ss_pred cc
Q 025427 169 SA 170 (253)
Q Consensus 169 ~a 170 (253)
..
T Consensus 120 p~ 121 (148)
T 2vgx_A 120 AN 121 (148)
T ss_dssp TT
T ss_pred cC
Confidence 43
No 153
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=94.66 E-value=0.32 Score=33.89 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=50.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHH-HHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLE-VYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlE-v~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
++++..++..|+|++|....+++.+.-+ ++ .+ ++..-..+|..++++.++...|.++.....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~-------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP-----VG-------KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS-----ST-------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 5789999999999999999999887621 12 24 677778889999999999999999987653
No 154
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=94.59 E-value=0.39 Score=44.83 Aligned_cols=129 Identities=11% Similarity=0.007 Sum_probs=99.8
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC-
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP- 172 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~- 172 (253)
.-++.+.-+...|+|++|.++.++.++..++.=| ++ ....+.++.-=..+|..++++.++...|.+++.+.-.++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg-~~---h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP-DI---NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC-TT---SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC-cc---chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 3345566667889999999999888876555433 44 667888888889999999999999999999999877754
Q ss_pred --chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cC--hhhHHHHHHHHHHH
Q 025427 173 --HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GN--QRRIQCLKYGFYLH 227 (253)
Q Consensus 173 --~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~--~~a~~~LKYlvL~~ 227 (253)
||.+-...... |.+|...|+|++|...+-+|.+-+... |. |.-...+.-|--|.
T Consensus 365 ~~Hp~~a~~l~nL-a~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~ 423 (429)
T 3qwp_A 365 GSHPVRGVQVMKV-GKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD 423 (429)
T ss_dssp SSCHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 68776666655 466889999999999999999998876 63 66555554444443
No 155
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=94.41 E-value=0.26 Score=35.32 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=52.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
..++.+|+..|+|++|...+++..+.-+. + .+++..-..+|..++++.++...|.++..+...-.
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPD-----Y-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 47899999999999999999988876211 1 23667778889999999999999999998765433
No 156
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.21 E-value=0.38 Score=43.58 Aligned_cols=106 Identities=10% Similarity=0.044 Sum_probs=77.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCC----CchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDG----TDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~----~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
..++..++..|+|++|....++..+.++..+. ..-........+++.--..+|..++++.++...|.+|+.+...
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 305 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS- 305 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-
Confidence 37899999999999999988888875433100 0000124455778888889999999999999999999986422
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|.. -..-|..+...++|+.|..+|-+|.+-
T Consensus 306 -~~~a----~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 306 -NTKA----LYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp -CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -hHHH----HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222 233466788889999999999999874
No 157
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=94.20 E-value=0.57 Score=34.07 Aligned_cols=66 Identities=17% Similarity=0.152 Sum_probs=52.9
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
.....++.+|...|+|++|...+++..+.-+. + .+++..=..+|..++++.++...|.++......
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-----H-------QALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34458899999999999999999988877211 1 456677788899999999999999999876543
No 158
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.15 E-value=1.3 Score=42.09 Aligned_cols=166 Identities=13% Similarity=0.156 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCC----cchhHHHHHHHHHHHHHHHh--
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSAS----QNFSLLREFYQTTLKALEEA-- 85 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~----~~~~~l~~~y~~~~e~i~~a-- 85 (253)
-+..++..+++.|+.+++++++.++..- .+.. ..-+.|.+|..++.... ....-++...++..+..+..
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~p--d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~ 102 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN---GVQL--SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVV 102 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCC--CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCC--CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCC
Confidence 3677789999999999999999998753 1221 23356778887764321 11122334444444332210
Q ss_pred hhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 86 KNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 86 ~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
.+..+| --++..|...|+.++|..+++++.+.=-.+ | +..|..=+..|.+.++..++..++..-.
T Consensus 103 Pd~~ty----n~lI~~~~~~g~~~~A~~l~~~M~~~g~~P----d-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 103 PNEATF----TNGARLAVAKDDPEMAFDMVKQMKAFGIQP----R-------LRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp CCHHHH----HHHHHHHHHHTCHHHHHHHHHHHHHTTCCC----C-------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----c-------cceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 011222 267888999999999999999998752121 2 3456666788889999999999998875
Q ss_pred hhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHH
Q 025427 166 AIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFE 203 (253)
Q Consensus 166 ~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~E 203 (253)
.. .-.|. ......|+-| +..|++++|...|-+
T Consensus 168 ~~-G~~Pd~~ty~~Li~~~-----~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 168 ES-EVVPEEPELAALLKVS-----MDTKNADKVYKTLQR 200 (501)
T ss_dssp HT-TCCCCHHHHHHHHHHH-----HHTTCHHHHHHHHHH
T ss_pred hc-CCCCCHHHHHHHHHHH-----hhCCCHHHHHHHHHH
Confidence 43 33455 5666777764 478899999877544
No 159
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.03 E-value=0.5 Score=41.76 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=80.4
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCch---hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDD---QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD---~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
..++..|+..|+|++|....++..+..+..+..++ .........++..-..+|..++++.++...|.+|+.+...
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-- 228 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN-- 228 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Confidence 37899999999999999999998888654321111 1123445678888888999999999999999999987532
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|.. -..=|..++..++|+.|..+|-.|.+-
T Consensus 229 ~~~a----~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 229 NEKG----LSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1222 233477888999999999999999874
No 160
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.85 E-value=2.2 Score=36.46 Aligned_cols=171 Identities=14% Similarity=0.084 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-hhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERL 90 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~-erl 90 (253)
+...++.++.+.|+++++.+.|++.+..- |.-+. .+-...........+ .+....+...+++.... -.+
T Consensus 101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~----~~~~~~~~~~~~~~~-----~~~A~~~~~~a~~~~p~~~~~ 170 (308)
T 2ond_A 101 LYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDPT----LVYIQYMKFARRAEG-----IKSGRMIFKKAREDARTRHHV 170 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSS-SSCTH----HHHHHHHHHHHHHHC-----HHHHHHHHHHHHTSTTCCTHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcc-ccCcc----HHHHHHHHHHHHhcC-----HHHHHHHHHHHHhcCCCCHHH
Confidence 45567788888899999999988888743 32111 011111111110001 12223344444442222 234
Q ss_pred HHHHhhhHHHHHh-hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc
Q 025427 91 WFKTNLKLCKIWF-DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 91 ~lk~~lkLa~l~l-~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~ 169 (253)
|+ ..+.+.. ..|++++|..+.+...+..+. + .+++.-=.+++..+++..+++++|.+|.....
T Consensus 171 ~~----~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~-------~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 171 YV----TAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HH----HHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 43 2333322 269999999999888876432 2 24444445677788999999999999987421
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
+ .|.-...+-..=|.+....|+++.|...+-.+.+.+-+
T Consensus 235 -l-~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 235 -L-PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp -S-CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred -C-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 1 12211122222223344568899999998888887754
No 161
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.81 E-value=1.4 Score=34.27 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=30.6
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKAL 165 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~ 165 (253)
..++.++...|++++|...++++.+.-+.. ++ .+++..=..++..+++..++...|.+++
T Consensus 112 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~---~~-------~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 112 CELAVQYNQVGRDEEALELLWNILKVNLGA---QD-------GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCTTT---TT-------THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhCccc---Ch-------HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 356666666666666666666555442111 11 0112222345555666666666666554
No 162
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.73 E-value=0.65 Score=43.58 Aligned_cols=105 Identities=11% Similarity=0.042 Sum_probs=86.1
Q ss_pred hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC---chhHHHHH
Q 025427 104 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGII 180 (253)
Q Consensus 104 ~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~---~P~i~g~I 180 (253)
..|+|++|.++.++.++.-++.=| ++ -..++.++--=..+|..++++.++...|.+|+.+.-.++ ||.+-...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg-~~---Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 385 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFE-DS---NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMW 385 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBC-TT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccC-hh---chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHH
Confidence 457899999999988887665544 34 566788888888999999999999999999999887754 68777666
Q ss_pred HhhccccccccccHHHHHHHHHHHhcccccc-cC
Q 025427 181 RECGGKMHMAERQWADAATDFFEAFKNYDEA-GN 213 (253)
Q Consensus 181 ~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~ 213 (253)
.-. |.+|...|+|++|...|-+|.+-+... |.
T Consensus 386 ~nL-a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~ 418 (433)
T 3qww_A 386 LKL-GRLYMGLENKAAGEKALKKAIAIMEVAHGK 418 (433)
T ss_dssp HHH-HHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHH-HHHHHhccCHHHHHHHHHHHHHHHHHHcCC
Confidence 665 466889999999999999999988766 53
No 163
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.64 E-value=0.6 Score=39.97 Aligned_cols=99 Identities=17% Similarity=0.141 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
.++..++..+++.|+++++.+.|++.+..- |.-+..+...+ ..+....+ .+...+.+.++++-.. -
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la-----~~~~~~~~-----~~~A~~~~~~al~~~p---~ 70 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRA-----LCYLKMQQ-----PEQALADCRRALELDG---Q 70 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH-----HHHHHTTC-----HHHHHHHHHHHTTSCT---T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHH-----HHHHHhcC-----HHHHHHHHHHHHHhCC---C
Confidence 478899999999999999999999999876 65433332222 22211111 2233344444443222 2
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQ 123 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~ 123 (253)
..+....++.+|...|+|++|...+++..+.-+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 71 SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 233445899999999999999999988887643
No 164
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.21 E-value=0.48 Score=43.87 Aligned_cols=106 Identities=19% Similarity=0.240 Sum_probs=80.2
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCc---hhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTD---DQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIP 172 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~d---D~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~ 172 (253)
..++..++..|+|.+|....++..+..+..+.-+ ..........++.--...|..++++.++...|.+|+.+...
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-- 349 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-- 349 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--
Confidence 3789999999999999999999888755432100 11123455788888889999999999999999999987532
Q ss_pred chhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 173 HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 173 ~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+|. + -..=|..++..++|+.|..+|-.|.+-
T Consensus 350 ~~~--a--~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 350 NEK--G--LYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp CHH--H--HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHH--H--HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 122 1 223377888999999999999999884
No 165
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=93.09 E-value=0.76 Score=36.27 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE- 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e- 88 (253)
..++..++..+++.|+++++.+.|++.+..- |.-+........ .+.. .+. .+.-.+....+++-..+.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~-----~~~~-~g~----~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAA-----IYQI-KEQ----FQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-----HHHH-TTC----HHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH-----HHHH-Hcc----HHHHHHHHHHHHhhCCCCc
Confidence 4578899999999999999999999999887 754443332221 1111 111 223334444444433322
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHc
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSC 122 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l 122 (253)
..| ..++.+|...|++++|....+...+..
T Consensus 105 ~~~----~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 105 TPV----FHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHH----HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHH----HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 333 478999999999999999999888874
No 166
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=92.89 E-value=0.39 Score=43.51 Aligned_cols=99 Identities=9% Similarity=0.040 Sum_probs=71.5
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc------
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS------ 169 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~------ 169 (253)
+-+|.++...|++++|+..+.+.... ++ ...-+|.+++-+++|..+++..+++..+.......-
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~i~~-------~~---~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~ 173 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEGIDN-------DE---AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGD 173 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTS-------SC---STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcc-------CC---CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccc
Confidence 37899999999999999888776332 22 246799999999999999999999999988766532
Q ss_pred -cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 170 -AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 170 -aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
++-.-...|-|....| .+++..|+..|=|.-+.|.
T Consensus 174 d~~l~~Laea~v~l~~g-----~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 174 NEMILNLAESYIKFATN-----KETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHHHHHHHT-----CSTTTHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHhC-----CccHHHHHHHHHHHHHhCC
Confidence 2212222343343333 2479999988888887774
No 167
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.56 E-value=4.4 Score=34.50 Aligned_cols=137 Identities=9% Similarity=0.068 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-hhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-ERL 90 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~-erl 90 (253)
+...++.++.+.|+++++...|++.+..- +.-...+...+ .++... .+ +. +....+...+++-..+ ..+
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a---~~~~~~--~~-~~---~~A~~~~~~al~~~p~~~~~ 205 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA---LMEYYC--SK-DK---SVAFKIFELGLKKYGDIPEY 205 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHH---HHHHHT--SC-CH---HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHH---HHHHHH--cC-CH---HHHHHHHHHHHHhCCCcHHH
Confidence 67788899999999999999999988765 43222222111 111110 11 12 1223344444443333 235
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
| +.++.++...|++++|..+.+...+.+.-.+ ++ -.+++..-++++...+|...+..++..++...-.
T Consensus 206 ~----~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p--~~------~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 206 V----LAYIDYLSHLNEDNNTRVLFERVLTSGSLPP--EK------SGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp H----HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG--GG------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred H----HHHHHHHHHCCCHHHHHHHHHHHHhccCCCH--HH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 5 6789999999999999999998887642110 11 1345555566777789999999999999876544
No 168
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=92.51 E-value=0.96 Score=30.30 Aligned_cols=61 Identities=16% Similarity=0.282 Sum_probs=48.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..++..++..|+|++|....++..+.-+ ++ .+++..-..+|...+++.++...|.++....
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALELDP-----NN-------AEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCC-----CC-------HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4688999999999999999988887621 11 3456666778889999999999999998764
No 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=92.42 E-value=0.88 Score=32.64 Aligned_cols=63 Identities=10% Similarity=0.078 Sum_probs=48.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhcc
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSA 170 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~a 170 (253)
..++.+|+..|+|++|...+++..+.-+ + -.+++..-..+|...++..++...|.++..+...
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 85 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDFDP-----T-------YSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T-------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4688899999999999988888877611 1 1345566677888889999999999998876544
No 170
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=92.34 E-value=6.3 Score=35.75 Aligned_cols=135 Identities=10% Similarity=0.055 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhh-h
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKN-E 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~-e 88 (253)
-.++..++.++.+.|+++++++.+++.+..- |.-..+...+.. ++... +.+ .+.-.+.+.++|+-..+ -
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~--~l~~~----g~d---~~eAl~~~~~al~l~P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRV--LLKSL----QKD---LHEEMNYITAIIEEQPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHT----TCC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHH--HHHHc----ccC---HHHHHHHHHHHHHHCCCCH
Confidence 3567888999999999999999999999876 654443333221 12211 110 22334455555553332 2
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..| ..++.++...|+|++|+...+...+. |. + -.+++..--.++..++++.++.+.|+++..+.
T Consensus 167 ~a~----~~~g~~~~~~g~~~eAl~~~~kal~l-------dP---~--~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~ 230 (382)
T 2h6f_A 167 QVW----HHRRVLVEWLRDPSQELEFIADILNQ-------DA---K--NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 230 (382)
T ss_dssp HHH----HHHHHHHHHHTCCTTHHHHHHHHHHH-------CT---T--CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHH----HHHHHHHHHccCHHHHHHHHHHHHHh-------Cc---c--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Confidence 344 34667777778888888777777765 11 1 12444555556666777777777777777654
Q ss_pred cc
Q 025427 169 SA 170 (253)
Q Consensus 169 ~a 170 (253)
-.
T Consensus 231 P~ 232 (382)
T 2h6f_A 231 VR 232 (382)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.95 E-value=0.22 Score=46.68 Aligned_cols=93 Identities=13% Similarity=0.066 Sum_probs=70.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRI 176 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i 176 (253)
.+|..++..|+|++|.+..++..+.-+ ++ .+++..-..+|..++++.++...|.+|..+... +|.
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p-----~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~- 75 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNP-----SN-------AIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YIK- 75 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHH-
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCC-----cc-------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CHH-
Confidence 567788899999999999888887621 11 566777788899999999999999999887321 122
Q ss_pred HHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 177 MGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 177 ~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.-..=|.++...++|+.|..+|-+|.+-
T Consensus 76 ---~~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 76 ---GYYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp ---HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1223367788899999999999998874
No 172
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=91.60 E-value=1.8 Score=40.57 Aligned_cols=86 Identities=15% Similarity=0.169 Sum_probs=65.1
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
+++--.|+.+|.+.|+|++|.++.++.++-.++.-|.+.+ .+.-.+.-=-.+|..++++.++...|.+|+.|-..+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp----~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~ 415 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL----NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVA 415 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh----HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 3444499999999999999999999988877766554442 233333344567899999999999999999988775
Q ss_pred ---CchhHHHHHH
Q 025427 172 ---PHPRIMGIIR 181 (253)
Q Consensus 172 ---~~P~i~g~I~ 181 (253)
-||.+.-.-+
T Consensus 416 lG~~Hp~~~~l~~ 428 (433)
T 3qww_A 416 HGKDHPYISEIKQ 428 (433)
T ss_dssp TCTTCHHHHHHHH
T ss_pred cCCCChHHHHHHH
Confidence 3788765544
No 173
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=91.55 E-value=0.47 Score=37.12 Aligned_cols=23 Identities=9% Similarity=-0.068 Sum_probs=17.7
Q ss_pred cccccccccHHHHHHHHHHHhcc
Q 025427 185 GKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 185 Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
|.++...|+|+.|...|-++.+.
T Consensus 115 a~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 115 AVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHcccHHHHHHHHHHHHHh
Confidence 55667788888888888887764
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=91.33 E-value=0.059 Score=50.62 Aligned_cols=127 Identities=13% Similarity=0.126 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++..++..+.++|+++++.+.|++.+..- +.-+.++. ++-..+....+ .++-.+.+.++++-..+ .
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~-----~lg~~~~~~g~-----~~~A~~~~~~al~l~p~---~ 73 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYG-----NRSLAYLRTEC-----YGYALGDATRAIELDKK---Y 73 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHH-----HHHHHHHHTTC-----HHHHHHHHHHHHHSCTT---C
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHH-----HHHHHHHHhcC-----HHHHHHHHHHHHHhCCC---C
Confidence 34566778889999999999999999886 65433222 22222221111 22333444444443222 2
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
......++.+|...|+|++|.+.+++..+.-+. + ... -...-....+...+++.++.+.|.
T Consensus 74 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~-----~---~~~--~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 IKGYYRRAASNMALGKFRAALRDYETVVKVKPH-----D---KDA--KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-----C---TTH--HHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C---HHH--HHHHHHHHHHHHHHHHHHHhcccc
Confidence 233348899999999999999999988876222 1 111 111222333566788888888888
No 175
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.10 E-value=3.4 Score=45.04 Aligned_cols=24 Identities=8% Similarity=0.178 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHH
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREML 37 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll 37 (253)
..++.++.+.|.++++.++|+..-
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~ 1076 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFD 1076 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcC
Confidence 347999999999999999999864
No 176
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=90.92 E-value=3.2 Score=37.42 Aligned_cols=129 Identities=12% Similarity=0.055 Sum_probs=84.5
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhc--CHHHHHHHHHHHHhh
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETK--NNKKLKQLYQKALAI 167 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~--n~~klk~~y~~a~~~ 167 (253)
.-+...+..+.+++..|+.+.|.++++++.+.-+ | ..-..--+-+++.|.-+....+ ++..+-..|..+..-
T Consensus 134 ~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~-----d-~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~ 207 (310)
T 3mv2_B 134 GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIE-----D-TVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT 207 (310)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC-----H-HHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----c-ccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh
Confidence 4666677999999999999999999999977611 1 0000112346778885555555 788888888886432
Q ss_pred hccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhccccc-----ccChhhHHHHHHHHHHHHhccC
Q 025427 168 KSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE-----AGNQRRIQCLKYGFYLHLLFLI 232 (253)
Q Consensus 168 ~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde-----~g~~~a~~~LKYlvL~~iL~~s 232 (253)
-..... +.+.+ .|+..|+|+.|...+-..-+-|-+ .++|.--.+|..++.+..+.+.
T Consensus 208 ~p~~~~~~lLln--------~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk 270 (310)
T 3mv2_B 208 FPTWKTQLGLLN--------LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL 270 (310)
T ss_dssp SCSHHHHHHHHH--------HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcccHHHHHH--------HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence 211001 23344 588999999999998644444321 1245666777777777777664
No 177
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.71 E-value=5.9 Score=32.25 Aligned_cols=107 Identities=14% Similarity=0.200 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhh-------hHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNY-------SEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~-------~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
.+++.+..+++.|+++++++.|+..+.+- |..+.+. -+-.-.+.=..+... +. .+.-.+-+..+|+-
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~L-gr----~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGL-RS----FDEALHSADKALHY 86 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHT-TC----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHC-CC----HHHHHHHHHHHHHh
Confidence 45788889999999999999999999998 7632210 000111111111111 11 12333444444543
Q ss_pred -------hhhh-hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHccc
Q 025427 85 -------AKNE-RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQR 124 (253)
Q Consensus 85 -------a~~e-rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~ 124 (253)
..+. ..|.+.-.+++..+...|+|++|+.-.+...+--+.
T Consensus 87 ~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~ 134 (159)
T 2hr2_A 87 FNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE 134 (159)
T ss_dssp HHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3332 477777689999999999999999988888887443
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=90.50 E-value=0.34 Score=43.31 Aligned_cols=95 Identities=12% Similarity=0.114 Sum_probs=73.2
Q ss_pred hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCch
Q 025427 95 NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHP 174 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P 174 (253)
.|-+|.+|.+.|+|++|.+++..+... . .+ .. . +-.-.-+++..++++.+...++.+ ...++|
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~----p~---~~-~---~~~~a~l~~~~~r~~dA~~~l~~a----~~~~d~ 167 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA--G----SE---HL-V---AWMKAVVYGAAERWTDVIDQVKSA----GKWPDK 167 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT--T----CH---HH-H---HHHHHHHHHHTTCHHHHHHHHTTG----GGCSCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--C----Cc---hH-H---HHHHHHHHHHcCCHHHHHHHHHHh----hccCCc
Confidence 335889999999999999988877652 1 22 11 2 222223899999999999999744 334578
Q ss_pred hHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 175 RIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 175 ~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
...+.+...-|..+..-|+++.|..+|-++-.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 87788999999999999999999999988864
No 179
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=90.28 E-value=2 Score=31.22 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=58.4
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
..++..+++.|+|..|..-+++..+..+..+. .+....+|+-.=...|.+++|+.++...|..|....-. ||.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-----~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~--~~~ 81 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEI-----STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE--HQR 81 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCC-----CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHH
Confidence 47899999999999999988888777644321 13445677777788999999999999999999875321 355
Q ss_pred HHHHH
Q 025427 176 IMGII 180 (253)
Q Consensus 176 i~g~I 180 (253)
+.+-.
T Consensus 82 ~~~n~ 86 (104)
T 2v5f_A 82 ANGNL 86 (104)
T ss_dssp HHHHH
T ss_pred HHhhH
Confidence 54433
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.08 E-value=2.4 Score=34.65 Aligned_cols=111 Identities=11% Similarity=-0.041 Sum_probs=78.1
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhc-cCCc-
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKS-AIPH- 173 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~-aI~~- 173 (253)
+.+++.++..|+|++|+..-+...+..+..+..+...-..+-..+|.-=.-++..++++.++-..|.+|+.+=| ++.-
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 36789999999999999999998888766322110000112234788888889999999999999999999711 1111
Q ss_pred h-----hHHHHHHhhccccccccccHHHHHHHHHHHhccc
Q 025427 174 P-----RIMGIIRECGGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 174 P-----~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
| .+.|..+ -|..+..-++|+.|..+|-.|.+=-
T Consensus 95 pd~~~A~~~~~~~--rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 95 QDEGKLWISAVYS--RALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp STHHHHHHHHHHH--HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHh--HHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 2 1233343 3666778899999999999998843
No 181
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.73 E-value=0.8 Score=33.26 Aligned_cols=90 Identities=8% Similarity=0.021 Sum_probs=63.0
Q ss_pred hhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhh
Q 025427 104 DMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIREC 183 (253)
Q Consensus 104 ~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~ 183 (253)
..|+|++|....++..+.- . +| ..-.+++..-..+|..++++.++...|.++......- |. +...
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~---~~----p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~----~~~~ 66 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--L---QG----KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH--QA----LRVF 66 (117)
T ss_dssp -----CCCHHHHHHHHSSC--C---CH----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HH----HHHH
T ss_pred CCCcHHHHHHHHHHHHHcC--C---CC----ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hH----HHHH
Confidence 3578889988888777641 1 12 2235677777889999999999999999998774322 32 2233
Q ss_pred ccccccccccHHHHHHHHHHHhccc
Q 025427 184 GGKMHMAERQWADAATDFFEAFKNY 208 (253)
Q Consensus 184 ~Gkl~~~ekdy~tA~s~F~EAFe~y 208 (253)
=|..+...|+|+.|...|-++.+..
T Consensus 67 l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 67 YAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4677888999999999999998854
No 182
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.71 E-value=0.78 Score=40.58 Aligned_cols=116 Identities=12% Similarity=-0.041 Sum_probs=74.7
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCC-----CCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccC
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQRED-----GTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAI 171 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~-----~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI 171 (253)
.++..++..|+|.+|....++..+...... +..+.....+...++..-..+|..++++.++...|.+|+.+...
T Consensus 184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~- 262 (338)
T 2if4_A 184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK- 262 (338)
T ss_dssp HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 789999999999999998888777643210 00000011122347788888999999999999999999886421
Q ss_pred CchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHH
Q 025427 172 PHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 220 (253)
Q Consensus 172 ~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~L 220 (253)
++. .-..=|..++..++|+.|..+|-.+.+-. .+++.+...|
T Consensus 263 -~~~----a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L 304 (338)
T 2if4_A 263 -NPK----ALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRREL 304 (338)
T ss_dssp -CHH----HHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred -CHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHH
Confidence 122 22334777889999999999999998743 2344444333
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=89.70 E-value=2.4 Score=31.35 Aligned_cols=95 Identities=7% Similarity=-0.099 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWF 92 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~l 92 (253)
...++..+.+.|+++++...+++.+..- |.-+.+...... +.... +. .+.-......+++-..+. .
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~--~~~~~----g~----~~~A~~~~~~al~l~P~~---~ 85 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGL--TQAEN----EK----DGLAIIALNHARMLDPKD---I 85 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH--HHHHT----TC----HHHHHHHHHHHHHHCTTC---H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHH--HHHHc----CC----HHHHHHHHHHHHHhCCCC---H
Confidence 4567889999999999999999999877 654444332222 11111 11 123334444444433222 2
Q ss_pred HHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 93 KTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
.....++.+|...|++++|...+++..+.
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 86 AVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23358999999999999999888877654
No 184
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=89.66 E-value=1.1 Score=38.43 Aligned_cols=100 Identities=5% Similarity=0.006 Sum_probs=66.7
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchh
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPR 175 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~ 175 (253)
+.+|..+++.|++++|...++++.+.-+. + .+.+..-..+|...++..++.+.|.++....-.-....
T Consensus 121 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~-----~-------~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~ 188 (287)
T 3qou_A 121 AQQAMQLMQESNYTDALPLLXDAWQLSNQ-----N-------GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQG 188 (287)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTS-----C-------HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCc-----c-------hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHH
Confidence 57888999999999999888888876221 1 35666667788888888888888877654321100001
Q ss_pred HHH----------------------------HHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 176 IMG----------------------------IIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 176 i~g----------------------------~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
+.+ .....=|.++...|+|+.|...|-++.+.
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111 11222366677888899998888888874
No 185
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.46 E-value=13 Score=34.17 Aligned_cols=172 Identities=13% Similarity=0.069 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE- 88 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e- 88 (253)
......++.++.+.|+++++.+.|++.+..- +.-+ +.+-......... ..-++...++...+++.....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~----~~~~~~~~~~~~~-----~~~~~~A~~~~~~Al~~~~~~~ 390 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIE-DIDP----TLVYIQYMKFARR-----AEGIKSGRMIFKKAREDARTRH 390 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SSCH----HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTCTTCCT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc-ccCc----hHHHHHHHHHHHH-----hcCHHHHHHHHHHHHhccCCch
Confidence 3445567788889999999999999988754 3211 1122222221110 001222233344444322221
Q ss_pred hhHHHHhhhHHHH-HhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 89 RLWFKTNLKLCKI-WFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 89 rl~lk~~lkLa~l-~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
.+|+ ..+.+ +...|++++|..+.+...+..++ + .+++..=++++...++..+++.+|.+|...
T Consensus 391 ~~~~----~~a~~~~~~~~~~~~A~~~~e~al~~~p~-----~-------~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 391 HVYV----TAALMEYYCSKDKSVAFKIFELGLKKYGD-----I-------PEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHH----HHHHHHHHHTCCHHHHHHHHHHHHHHHTT-----C-------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHH----HHHHHHHHHcCChhHHHHHHHHHHHHCCC-----C-------HHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 2232 22323 23589999999999988887432 2 234444555667789999999999999875
Q ss_pred hccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccc
Q 025427 168 KSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 168 ~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yd 209 (253)
... .|.-.+.+=..-+.+-...||.++|...+-.+.+.|.
T Consensus 455 ~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 455 GSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred cCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 321 2432222221112222344778888887777777764
No 186
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=89.26 E-value=12 Score=33.83 Aligned_cols=92 Identities=11% Similarity=0.146 Sum_probs=43.4
Q ss_pred hHHHHHhh----hcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhh
Q 025427 97 KLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 97 kLa~l~l~----~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk~~y~~a~~~~ 168 (253)
.|+.+|.. .+++++|....+...+. ++ .+.+..=-.+|.. .+|..++...|.+|....
T Consensus 152 ~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~-------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 217 (490)
T 2xm6_A 152 SMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN-------VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG 217 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC-------HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC
Confidence 56666666 66677776666555432 11 1112222233433 466677777776665432
Q ss_pred ccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 169 SAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 169 ~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
+.. .-...|.+-..| .-..+|+++|..+|-.|.+
T Consensus 218 ~~~-a~~~lg~~y~~g---~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 218 DEL-GQLHLADMYYFG---IGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp CHH-HHHHHHHHHHHT---SSSCCCHHHHHHHHHHHHT
T ss_pred CHH-HHHHHHHHHHcC---CCCCCCHHHHHHHHHHHHH
Confidence 210 011222222211 0125666666666666554
No 187
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=88.35 E-value=2.3 Score=30.28 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
+++..-..+|...+++.++...|.++......- |.. -..=|.++...++|+.|...|-++.+-....|+.....
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 93 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY--SVA----WKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK 93 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH----HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc--HHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHH
Confidence 456666778899999999999999998864322 221 12336778889999999999999998776667665544
Q ss_pred HH
Q 025427 219 CL 220 (253)
Q Consensus 219 ~L 220 (253)
-+
T Consensus 94 ~l 95 (115)
T 2kat_A 94 EL 95 (115)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 188
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=88.01 E-value=15 Score=33.26 Aligned_cols=161 Identities=14% Similarity=0.006 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHH----hCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh
Q 025427 11 KALKQTVKLYYR----LGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK 86 (253)
Q Consensus 11 kAlkql~kl~~~----~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~ 86 (253)
.|...++..|.. .++++++.++|++....= . + .+...+=..+....+...+ .++-.+...++++. .
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~-~--~-----~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~a~~~-~ 109 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG-Y--T-----PAEYVLGLRYMNGEGVPQD-YAQAVIWYKKAALK-G 109 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C--H-----HHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC-C--H-----HHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHC-C
Confidence 567788999998 899999999998876542 1 1 1222222222211110000 11222233333221 1
Q ss_pred hhhhHHHHhhhHHHHHhh----hcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHH
Q 025427 87 NERLWFKTNLKLCKIWFD----MGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLK 158 (253)
Q Consensus 87 ~erl~lk~~lkLa~l~l~----~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk 158 (253)
.-.....|+.+|.. .+++++|....+...+. ++ .+.+..=-.+|.. .+|..++.
T Consensus 110 ----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-------~~-------~~a~~~Lg~~y~~g~g~~~d~~~A~ 171 (490)
T 2xm6_A 110 ----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-------GR-------DSGQQSMGDAYFEGDGVTRDYVMAR 171 (490)
T ss_dssp ----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred ----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC-------HHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 11223478999998 89999999888876543 12 1122222344554 67999999
Q ss_pred HHHHHHHhhhccCCchh---HHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 159 QLYQKALAIKSAIPHPR---IMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 159 ~~y~~a~~~~~aI~~P~---i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
..|.+|.... +|. ..|.+-..|- -.++|+++|..+|-.|-+
T Consensus 172 ~~~~~a~~~~----~~~a~~~Lg~~y~~g~---g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 172 EWYSKAAEQG----NVWSCNQLGYMYSRGL---GVERNDAISAQWYRKSAT 215 (490)
T ss_dssp HHHHHHHHTT----CHHHHHHHHHHHHHTS---SSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC----CHHHHHHHHHHHhcCC---CCCcCHHHHHHHHHHHHH
Confidence 9999987653 333 3333332221 128999999999998875
No 189
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=87.52 E-value=4 Score=39.70 Aligned_cols=92 Identities=10% Similarity=0.081 Sum_probs=65.0
Q ss_pred HhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 94 TNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 94 ~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..+.++.+|++.|+|++|...+++..+.-. ++ .+++..--.+|..++++.++.+.|.+|....-.-+.
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-----~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 502 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERVG-----WR-------WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA 502 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-----CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccCc-----ch-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 345789999999999999999888887621 12 356666677888899999999999999887655444
Q ss_pred -hhHHHHHHhhccccccccccHHHHH
Q 025427 174 -PRIMGIIRECGGKMHMAERQWADAA 198 (253)
Q Consensus 174 -P~i~g~I~e~~Gkl~~~ekdy~tA~ 198 (253)
-...|.+-+.-|..-- ...|++|.
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al 527 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVW 527 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHH
Confidence 3356666665555544 44444443
No 190
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.37 E-value=2.6 Score=35.05 Aligned_cols=94 Identities=11% Similarity=0.126 Sum_probs=59.4
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 5 KAEWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 5 ~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
..++.+.++..++..++.+|+|-.+...|++.+.+- ..++|+.+.++- +..-+..|++ . +.
T Consensus 58 sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~-k~l~k~~s~~~~---~~~~ss~p~s-~-------~~------- 118 (167)
T 3ffl_A 58 SPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK-KALSKTSKVRPS---TGNSASTPQS-Q-------CL------- 118 (167)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HCC-------------------------------CC-------
T ss_pred cHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-HHHhcCCCcccc---ccccCCCccc-c-------cc-------
Confidence 367999999999999999999999999999999998 778887765321 1111111110 0 00
Q ss_pred hhhhhhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 85 AKNERLWFKTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 85 a~~erl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
..| -..+-|.|.-|.+.+++++|+.+++.|=.+
T Consensus 119 -~~e---~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 119 -PSE---IEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -CCH---HHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred -cch---HHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 001 013347899999999999999887766444
No 191
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=87.00 E-value=15 Score=34.00 Aligned_cols=121 Identities=14% Similarity=0.110 Sum_probs=81.0
Q ss_pred hHHHHHhhhcchhHHHH-------------------HHHHHHHHcccCCCCch--------------hhhcchH---HHH
Q 025427 97 KLCKIWFDMGEYGRMSK-------------------ILKELHKSCQREDGTDD--------------QKKGSQL---LEV 140 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~-------------------li~~L~~~l~~~~~~dD--------------~~kk~~L---lEv 140 (253)
+|+++|.+.|++++..+ +++.|...+...+++.| ..|..+| +|+
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~ 103 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA 103 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666533 44455555555554422 1134444 455
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cChhhHHH
Q 025427 141 YAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQC 219 (253)
Q Consensus 141 ~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~~~a~~~ 219 (253)
-+.. +|...+++.++-.+++..+.--..+-.+...=.|-.+--+||..-+|+.+|..++-.|=..-+.. .+|+-.-.
T Consensus 104 kL~~--l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIA--LYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHH--HHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHH--HHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 5544 67889999999888888887444455588888888888899999999999999988886655544 44543333
No 192
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.00 E-value=11 Score=34.84 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
++...+++.|.+.|+++++.+.|.+++.+. .. ++.+.+=.+ .++...-. ..+...+...+.-+...+........
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~-~~-~~~kid~~l-~~irl~l~--~~d~~~~~~~~~ka~~~~~~~~d~~~ 206 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKA-IS-TGAKIDVML-TIARLGFF--YNDQLYVKEKLEAVNSMIEKGGDWER 206 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHH-TC-CCSHHHHHH-HHHHHHHH--HTCHHHHHHHHHHHHHHHTTCCCTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CC-hHHHHHHHH-HHHHHHHH--hccHHHHHHHHHHHHHhhhcCCCHHH
Confidence 577899999999999999999999999988 33 233333222 22221111 11344455555555544443333333
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHH
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKS 121 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~ 121 (253)
.-|.+.-.+..++..++|.+|....-++...
T Consensus 207 ~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 207 RNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 3344445566778899999998776665554
No 193
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=86.00 E-value=5.2 Score=27.47 Aligned_cols=70 Identities=7% Similarity=0.026 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccC
Q 025427 138 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 138 lEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
.+.+.-.-..+...+++.++...|.+|..+... +|.+ -..=|..+...++|+.|..+|-++.+-....++
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 73 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NPVG----YSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH 73 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CHHH----HHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHH----HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH
Confidence 355666778889999999999999999886432 2332 334577788999999999999999986544433
No 194
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=84.24 E-value=4.2 Score=28.70 Aligned_cols=77 Identities=14% Similarity=0.087 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 139 EVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 139 Ev~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
+++..--.+|...+++.++...|.++......-+. .-..=|..+...++|+.|...|-++.+--...++..+..
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 45566677888999999999999999987543222 122236677888999999999999998666667766555
Q ss_pred HHH
Q 025427 219 CLK 221 (253)
Q Consensus 219 ~LK 221 (253)
-+.
T Consensus 82 ~l~ 84 (100)
T 3ma5_A 82 ELQ 84 (100)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 195
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.14 E-value=14 Score=34.43 Aligned_cols=110 Identities=17% Similarity=0.193 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhh
Q 025427 11 KALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERL 90 (253)
Q Consensus 11 kAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl 90 (253)
+-...|++++.+.|+++++.+.+.++..-....+++ . .-.++.
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~---------------------~----~kve~~------------ 180 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM---------------------S----EKIQFI------------ 180 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH---------------------H----HHHHHH------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH---------------------H----HHHHHH------------
Confidence 345689999999999999999998886544211111 0 001111
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAI 167 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~ 167 (253)
+..++++++.++|.+|..+++.+....-..+ .+ ..+-+..+.+-+++|..-+++..+-..|..+...
T Consensus 181 -----l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~--~~---~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 181 -----LEQMELSILKGDYSQATVLSRKILKKTFKNP--KY---ESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp -----HHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS--CC---HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHCCCHHHHHHHHHHHHHhhcccC--Cc---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 2456788889999999999998865443321 22 3466788888888988888888777666666543
No 196
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=82.49 E-value=5.7 Score=36.87 Aligned_cols=101 Identities=7% Similarity=-0.051 Sum_probs=73.9
Q ss_pred HHHHHHhhcCHHHHHHHHHHHHhhhccCC---chhHHHHHHhhccccccccccHHHHHHHHHHHhcccccc-cChhhHHH
Q 025427 144 EIQMYTETKNNKKLKQLYQKALAIKSAIP---HPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEA-GNQRRIQC 219 (253)
Q Consensus 144 E~~~y~~~~n~~klk~~y~~a~~~~~aI~---~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~-g~~~a~~~ 219 (253)
++.-+...+++.++...|.+++.+...+. ||.+....+-. |.++...|+|++|..++-+|.+.|... |..--...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L-~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a 371 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCA-MDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG 371 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHH-HHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence 34556677899999999999999988775 46655555544 455778999999999999999999876 76555566
Q ss_pred HHHHHHHHHhccCCCchHHHHHHHHH
Q 025427 220 LKYGFYLHLLFLISIYFLYLYFLTRI 245 (253)
Q Consensus 220 LKYlvL~~iL~~s~id~~~~~~~~~~ 245 (253)
.-|.-|+.+..+..--.-++-.+.+.
T Consensus 372 ~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 372 VQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 66888888877655544444444443
No 197
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=82.35 E-value=6.2 Score=31.84 Aligned_cols=24 Identities=17% Similarity=0.407 Sum_probs=16.0
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHK 120 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~ 120 (253)
.++.+|...+++++|....+...+
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~ 46 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAA 46 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHH
Confidence 566777777777777766665543
No 198
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=82.23 E-value=5.3 Score=27.31 Aligned_cols=50 Identities=16% Similarity=0.329 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcC
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSG 62 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~ 62 (253)
++..++.++...|+++++.+.|++.+..- |.-+.+..-..+..+++.+..
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~a~~~~~~ 86 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQARKMVMDILNFYNK 86 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777777777766 554444433444555555543
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=81.45 E-value=14 Score=27.89 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=63.7
Q ss_pred HHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhccCCc
Q 025427 98 LCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 98 La~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
|+.+|...+.+++|....+.--+. .+ .+.+..=-.+|.. .+|..++...|++|....++-.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~-------g~-------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~a- 95 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL-------NS-------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLNDQDG- 95 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC-------CC-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCCCHHH-
Confidence 888888888888876665554433 12 1112222344555 6899999999999976532111
Q ss_pred hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHH
Q 025427 174 PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 220 (253)
Q Consensus 174 P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~L 220 (253)
-...|.+-+.| .--++|+++|..+|-.|-+ .|++.+...|
T Consensus 96 ~~~Lg~~y~~G---~g~~~d~~~A~~~~~~Aa~----~g~~~A~~~l 135 (138)
T 1klx_A 96 CLILGYKQYAG---KGVVKNEKQAVKTFEKACR----LGSEDACGIL 135 (138)
T ss_dssp HHHHHHHHHHT---SSSCCCHHHHHHHHHHHHH----TTCHHHHHHC
T ss_pred HHHHHHHHHCC---CCCCcCHHHHHHHHHHHHH----CCCHHHHHHH
Confidence 22334443332 1128999999999999976 4777776554
No 200
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=81.27 E-value=8.9 Score=31.74 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=56.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
..++-+++.|.|+.|..+.+-|....+..+ |..-...-.++..+=-+.++..+|+.++...|.+|+.....++-
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~---~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNP---ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHST---TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCc---ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 445678899999999988888887754431 21124456788888899999999999999999999888887763
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=77.12 E-value=13 Score=24.37 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 138 LEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 138 lEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
.+++..-..+|...+++.++...|.++...... +|. +-..=|.++...++|+.|..+|-++.+-
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAE----AWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 456666677888999999999999999876422 132 2233467788899999999999999874
No 202
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=76.80 E-value=27 Score=33.12 Aligned_cols=84 Identities=18% Similarity=0.308 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhh---------h-hhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHH
Q 025427 13 LKQTVKLYYRLGKYKEMMDAYREMLTYIK---------S-AVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKAL 82 (253)
Q Consensus 13 lkql~kl~~~~~~~~~~~~~~~~ll~~~~---------~-~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i 82 (253)
+..++.+|.+.|+++++..+++.-++.=. + .-+|=+-+|.+.-+--+.+.+ | +..+.
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i---n---i~k~~------- 276 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---N---IPKVL------- 276 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS---C---HHHHH-------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---c---CcHHH-------
Confidence 33577899999999999999887754310 1 123444555555533333322 1 11222
Q ss_pred HHhhhhhhHHHHhhhHHHHHhhhcchhHHHH
Q 025427 83 EEAKNERLWFKTNLKLCKIWFDMGEYGRMSK 113 (253)
Q Consensus 83 ~~a~~erl~lk~~lkLa~l~l~~~~y~~a~~ 113 (253)
.+|.+-.+|. .++-||++.++|+.|..
T Consensus 277 ~~~~~~~~w~----e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 277 RAAEQAHLWA----ELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTTCHH----HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHhhchHHHHHH
Confidence 2333445774 67889999999998843
No 203
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein binding, sugar protein; 2.41A {Geobacillus stearothermophilus}
Probab=76.73 E-value=50 Score=30.95 Aligned_cols=119 Identities=18% Similarity=0.239 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH-hhh--h
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE-AKN--E 88 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~-a~~--e 88 (253)
+..+-.+-..+.|+.+++.++|-.+.-.++.. .| ||+++- |. +.. ++.++..+- |+. +
T Consensus 105 ~~~~eL~~ai~~~dl~~a~~~YHklsyeikk~--------av--ll~RVY---G~--stR----e~il~~fk~pA~~l~~ 165 (412)
T 2ra1_A 105 KMRQELKAAVDAKDLKKAEELYHKISYELKTR--------TV--ILDRVY---GQ--STR----ELLRSTFKADAQALRD 165 (412)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS--------TH--HHHTSS---CH--HHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhccHHHHHHHhhhhhHhhhhc--------EE--EEeccc---Ch--hHH----HHHHHHhhchHHHHHH
Confidence 34444445568899999999998887666221 12 577774 31 111 222222221 221 2
Q ss_pred hh----HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 025427 89 RL----WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKA 164 (253)
Q Consensus 89 rl----~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a 164 (253)
+. -....++.+.-.++.|+.++|...+.++.+++.+. +|. +--|+ .+....++++|..+
T Consensus 166 ~~~y~Itv~~~~~~~~~a~~~g~l~~a~~~l~~v~~~l~kv---~d~----FkaeL----------~~aa~~a~~aYeaa 228 (412)
T 2ra1_A 166 RLIYDITVAMKAREAQDAVKAGNLDKAKAALDQVNQYVSKV---TDA----FKAEL----------QKAAQDAKAAYEAA 228 (412)
T ss_dssp HTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGC---CST----THHHH----------HHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhh---hHH----HHHHH----------HHhhhhhhhhhccc
Confidence 22 23345588999999999999999999999999998 562 11111 23466788888888
Q ss_pred Hh
Q 025427 165 LA 166 (253)
Q Consensus 165 ~~ 166 (253)
.+
T Consensus 229 ~t 230 (412)
T 2ra1_A 229 LT 230 (412)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 204
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=75.62 E-value=45 Score=29.95 Aligned_cols=162 Identities=10% Similarity=0.124 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh-hh
Q 025427 11 KALKQTVKLYYRLGK-YKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-NE 88 (253)
Q Consensus 11 kAlkql~kl~~~~~~-~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~-~e 88 (253)
.++..++.++...|+ ++++++.+++.+..- |.-..++.-... ++....... .-...+..+|+-.. +-
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~--~~~~~g~~~--------eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV--LVEWLRDPS--------QELEFIADILNQDAKNY 200 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHHTCCT--------THHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH--HHHHccCHH--------HHHHHHHHHHHhCccCH
Confidence 466788999999997 999999999999887 765544443332 333333211 22345555555322 33
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh-cCHHHH-----HHHHH
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-KNNKKL-----KQLYQ 162 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-~n~~kl-----k~~y~ 162 (253)
..| ..++.++...|+|++|+...++..+.=. ++ .+.+..--.++..+ +...++ ...|.
T Consensus 201 ~a~----~~lg~~~~~~g~~~eAl~~~~~al~l~P-----~~-------~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~ 264 (382)
T 2h6f_A 201 HAW----QHRQWVIQEFKLWDNELQYVDQLLKEDV-----RN-------NSVWNQRYFVISNTTGYNDRAVLEREVQYTL 264 (382)
T ss_dssp HHH----HHHHHHHHHHTCCTTHHHHHHHHHHHCT-----TC-------HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHcCChHHHHHHHHHHHHhCC-----CC-------HHHHHHHHHHHHHhcCcchHHHHHHHHHHHH
Confidence 455 3688899999999999998888887611 11 23344444455563 443555 36677
Q ss_pred HHHhhhccCCchhHHHHHHhhccccccc-cccHHHHHHHHHHH
Q 025427 163 KALAIKSAIPHPRIMGIIRECGGKMHMA-ERQWADAATDFFEA 204 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~Gkl~~~-ekdy~tA~s~F~EA 204 (253)
+|..+. |.-.....-.|+.+... .++|+.|...+-+.
T Consensus 265 ~Al~l~-----P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 265 EMIKLV-----PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HHHHHS-----TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred HHHHHC-----CCCHHHHHHHHHHHHccCccchHHHHHHHHHh
Confidence 776654 22222222223322221 14788887655444
No 205
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=75.24 E-value=49 Score=30.14 Aligned_cols=135 Identities=9% Similarity=0.078 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh-hh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE-RL 90 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e-rl 90 (253)
+..+.+..+.+.|+++++.+.|++.+..- +.-...+...+ .++... .+ +. +.-..+...+++...+. .+
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a---~~~~~~--~~-~~---~~A~~~~e~al~~~p~~~~~ 427 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAA---LMEYYC--SK-DK---SVAFKIFELGLKKYGDIPEY 427 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHH---HHHHHH--TC-CH---HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHH---HHHHHH--cC-Ch---hHHHHHHHHHHHHCCCCHHH
Confidence 56677778888888888888888887654 32222222211 122221 11 11 23334444444444433 36
Q ss_pred HHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 91 WFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 91 ~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
| +.++.++...|++++|..+.+...+.++.. .+ .+..+...- +++....||...++.++..++..-
T Consensus 428 ~----~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~---~~-~~~~lw~~~----~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 428 V----LAYIDYLSHLNEDNNTRVLFERVLTSGSLP---PE-KSGEIWARF----LAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp H----HHHHHHHTTTTCHHHHHHHHHHHHHSCCSC---GG-GCHHHHHHH----HHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred H----HHHHHHHHhCCCHhhHHHHHHHHHhccCCC---HH-HHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6 578889999999999999999988765432 11 112222222 333445689999999888887643
No 206
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=74.54 E-value=21 Score=31.49 Aligned_cols=118 Identities=10% Similarity=-0.075 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhhhhh-hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcC
Q 025427 75 YQTTLKALEEAKNER-LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKN 153 (253)
Q Consensus 75 y~~~~e~i~~a~~er-l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n 153 (253)
|+-..+.++...... -+. ...-++.++++.++|++|+..+++..+. .| ..+--+++..--.++-.+++
T Consensus 118 y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d---~~~~~~a~~~LG~al~~LG~ 186 (282)
T 4f3v_A 118 YADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PD---KFLAGAAGVAHGVAAANLAL 186 (282)
T ss_dssp HHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SC---HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CC---cccHHHHHHHHHHHHHHCCC
Confidence 444445444433211 233 4457788999999999999888633222 23 22334678888888999999
Q ss_pred HHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcc
Q 025427 154 NKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKN 207 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~ 207 (253)
..++...|.++.. -++ |.........-|..+...|+.++|...|=++...
T Consensus 187 ~~eAl~~l~~a~~----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 187 FTEAERRLTEAND----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHT----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9999999998862 345 6656667778889999999999999999888774
No 207
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.18 E-value=49 Score=29.66 Aligned_cols=138 Identities=6% Similarity=-0.080 Sum_probs=67.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh--hh--HH
Q 025427 17 VKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE--RL--WF 92 (253)
Q Consensus 17 ~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e--rl--~l 92 (253)
+..+.+.|++..+.++-..++... ..-.-...+..+.++++.++..|...+ .......++|+|+... .- --
T Consensus 60 a~~ll~~~Q~~sa~DLa~llvev~-~~~~~~~~~~~~~rl~~l~~~~p~~~~----~r~~fi~~ai~WS~~~g~~~~Gdp 134 (312)
T 2wpv_A 60 ALSFLKAKQGGSGTDLIFYLLEVY-DLAEVKVDDISVARLVRLIAELDPSEP----NLKDVITGMNNWSIKFSEYKFGDP 134 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCSHHHHHHHHHHHTTCCTTCT----THHHHHHHHHHHHHHTSSCTTCCH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHHCCCCCc----hHHHHHHHHHHHHhhcCCCCCCCH
Confidence 333344444444444433333333 211122345566666666665443222 2245667788887632 11 11
Q ss_pred HHhhhHHHHHhhhcchhHH------------HHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH-HHhhcCHHHHHH
Q 025427 93 KTNLKLCKIWFDMGEYGRM------------SKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNNKKLKQ 159 (253)
Q Consensus 93 k~~lkLa~l~l~~~~y~~a------------~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~-y~~~~n~~klk~ 159 (253)
...--+|..|.+.++|.+| ..+.+=|.++.+..++.+. .-.++++...-+ |-.++|..-++.
T Consensus 135 ~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~-----~e~dlf~~RaVL~yL~l~n~~~A~~ 209 (312)
T 2wpv_A 135 YLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED-----STVAEFFSRLVFNYLFISNISFAHE 209 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH-----HHHHHHHHHHHHHHHHTTBHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc-----chHHHHHHHHHHHHHHhcCHHHHHH
Confidence 1222455555555665555 3455556666554221111 224555555433 346788888887
Q ss_pred HHHHH
Q 025427 160 LYQKA 164 (253)
Q Consensus 160 ~y~~a 164 (253)
++..-
T Consensus 210 ~~~~f 214 (312)
T 2wpv_A 210 SKDIF 214 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76643
No 208
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.01 E-value=51 Score=29.77 Aligned_cols=82 Identities=11% Similarity=0.108 Sum_probs=64.2
Q ss_pred hhHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 89 RLWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 89 rl~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..++..-..++..++..|++.+|...+..+...=. . ++ +.+..-++.++..++...+.+.|...++.=
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P-~---~E--------~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHP-Y---RE--------PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-T---CH--------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-C---CH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 45666666899999999999999988888876511 1 33 478888999999999999999999998753
Q ss_pred c---cC-CchhHHHHHHh
Q 025427 169 S---AI-PHPRIMGIIRE 182 (253)
Q Consensus 169 ~---aI-~~P~i~g~I~e 182 (253)
. .+ |.|.++...+.
T Consensus 236 ~~eLG~~P~~~l~~l~~~ 253 (388)
T 2ff4_A 236 ADDLGIDPGPTLRALNER 253 (388)
T ss_dssp HHHHSCCCCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHH
Confidence 2 35 44888887766
No 209
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=73.75 E-value=9.5 Score=27.43 Aligned_cols=75 Identities=12% Similarity=-0.037 Sum_probs=54.0
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHH
Q 025427 146 QMYTETKNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKY 222 (253)
Q Consensus 146 ~~y~~~~n~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKY 222 (253)
+.++..+++.++..-|..|+.....-.. +...+.|-..=|..+...|+++.|..++-++.+ ++ .+++++...++|
T Consensus 13 ~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-l~-P~~~~~~~n~~~ 88 (104)
T 2v5f_A 13 KVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-LD-PEHQRANGNLKY 88 (104)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HC-TTCHHHHHHHHH
T ss_pred HHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cC-CCCHHHHhhHHH
Confidence 4566789999999999999986532221 123345556668889999999999999999987 32 355666666663
No 210
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=72.89 E-value=55 Score=29.63 Aligned_cols=99 Identities=17% Similarity=0.239 Sum_probs=54.6
Q ss_pred hHHHH-H--hhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHh----hcCHHHHHHHHHHHHhhhc
Q 025427 97 KLCKI-W--FDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTE----TKNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 97 kLa~l-~--l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~----~~n~~klk~~y~~a~~~~~ 169 (253)
.|+.+ | ...+++++|...++...+. ++ .+.+..=-.+|.. .+|..++...|.+|. ..
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-------g~-------~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa--~g 316 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAA-------DQ-------PRAELLLGKLYYEGKWVPADAKAAEAHFEKAV--GR 316 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHT-------TC-------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT--TT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHC-------CC-------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh--CC
Confidence 67776 4 5788888888777765432 11 0111111223331 138888888888876 11
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHH
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQ 218 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~ 218 (253)
...--...|.+=+.|. --++|+++|..+|-.|-+ .|++.+.-
T Consensus 317 ~~~A~~~Lg~~y~~G~---g~~~d~~~A~~~~~~Aa~----~g~~~A~~ 358 (452)
T 3e4b_A 317 EVAADYYLGQIYRRGY---LGKVYPQKALDHLLTAAR----NGQNSADF 358 (452)
T ss_dssp CHHHHHHHHHHHHTTT---TSSCCHHHHHHHHHHHHT----TTCTTHHH
T ss_pred CHHHHHHHHHHHHCCC---CCCcCHHHHHHHHHHHHh----hChHHHHH
Confidence 1111223444444331 136788888888888866 35555543
No 211
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=68.55 E-value=7.5 Score=28.03 Aligned_cols=33 Identities=15% Similarity=0.126 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA 43 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~ 43 (253)
-+|+..++.++++.|+|+++.++++.++..- +.
T Consensus 43 ~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~-p~ 75 (93)
T 3bee_A 43 EAALSLIANDHFISFRFQEAIDTWVLLLDSN-DP 75 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC-CT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC
Confidence 4688889999999999999999999999877 54
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=66.64 E-value=1.5e+02 Score=32.53 Aligned_cols=167 Identities=13% Similarity=0.220 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhh-------hhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSA-------VTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEE 84 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~-------v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~ 84 (253)
++.+++..+.+.|+++++.++|...+...+.. ..=++..+ +..+-+++.. + +. ..++.+...+-+.
T Consensus 1136 ay~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~r-leele~fI~~-~--n~---ad~~~iGd~le~e 1208 (1630)
T 1xi4_A 1136 SYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNR-LAELEEFING-P--NN---AHIQQVGDRCYDE 1208 (1630)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC-HHHHHHHHhC-C--CH---HHHHHHHHHHHhc
Confidence 56667777777788888888777665544211 11111211 2233333322 2 12 1222322222221
Q ss_pred hh---hhhhHHHHhh--hHHHHHhhhcchhHHHHHHHHHHHH---------cccCCCCch---hhhcchHH----HHHHH
Q 025427 85 AK---NERLWFKTNL--KLCKIWFDMGEYGRMSKILKELHKS---------CQREDGTDD---QKKGSQLL----EVYAI 143 (253)
Q Consensus 85 a~---~erl~lk~~l--kLa~l~l~~~~y~~a~~li~~L~~~---------l~~~~~~dD---~~kk~~Ll----Ev~~l 143 (253)
.. ....|-+..- |++..|...|+|++|.+.-+.-... |-.. .| .....+-+ |-+--
T Consensus 1209 g~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~---~Ef~LA~~cgl~Iiv~~deLee 1285 (1630)
T 1xi4_A 1209 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDG---KEFRLAQMCGLHIVVHADELEE 1285 (1630)
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhh---hHHHHHHHHHHhhhcCHHHHHH
Confidence 11 1224444433 9999999999999997766543111 1000 00 00000001 11122
Q ss_pred HHHHHHhhcCHHHHHHHHHHHH-------------hhhccCCchh-HHHHHHhhccccc
Q 025427 144 EIQMYTETKNNKKLKQLYQKAL-------------AIKSAIPHPR-IMGIIRECGGKMH 188 (253)
Q Consensus 144 E~~~y~~~~n~~klk~~y~~a~-------------~~~~aI~~P~-i~g~I~e~~Gkl~ 188 (253)
-+..|.+.+.+..+-.++.+++ .+.-+-|+|. ++--++.-..++.
T Consensus 1286 li~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rin 1344 (1630)
T 1xi4_A 1286 LINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN 1344 (1630)
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc
Confidence 3556788899999999999993 3444556654 5555554444433
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=65.94 E-value=33 Score=32.20 Aligned_cols=102 Identities=11% Similarity=0.072 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhH
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLW 91 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~ 91 (253)
++.-++..|++.|+.+++.++++++...= +.. ...+-+.+|+.+....+ ++...++..+..+. . -.--
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~P--d~~tyn~lI~~~~~~g~-----~~~A~~l~~~M~~~-G-~~Pd 174 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFG---IQP--RLRSYGPALFGFCRKGD-----ADKAYEVDAHMVES-E-VVPE 174 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCC--CHHHHHHHHHHHHHTTC-----HHHHHHHHHHHHHT-T-CCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC--ccceehHHHHHHHHCCC-----HHHHHHHHHHHHhc-C-CCCC
Confidence 45678899999999999999999887541 111 23456788887775433 23333444433221 1 0011
Q ss_pred HHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccC
Q 025427 92 FKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRE 125 (253)
Q Consensus 92 lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~ 125 (253)
.-+---++..+...|+.++|.++++++++.-..+
T Consensus 175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 1122378889999999999999999999987776
No 214
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=65.05 E-value=52 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.9
Q ss_pred hhHHHHHhhhcchhHHHHHHHHHHHHcccC
Q 025427 96 LKLCKIWFDMGEYGRMSKILKELHKSCQRE 125 (253)
Q Consensus 96 lkLa~l~l~~~~y~~a~~li~~L~~~l~~~ 125 (253)
++-.+-+++.++|+.|.+++.+++..+-..
T Consensus 11 l~~L~~~~~~~d~~~~~~lL~~lk~~L~~~ 40 (229)
T 4b0z_A 11 LNHLADLYDRKDWNACKKELLKLKVELAKQ 40 (229)
T ss_dssp SHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 344555678999999999999998765543
No 215
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.96 E-value=14 Score=33.78 Aligned_cols=128 Identities=7% Similarity=0.089 Sum_probs=70.3
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhh-------hhhhHHHHhh
Q 025427 24 GKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAK-------NERLWFKTNL 96 (253)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~-------~erl~lk~~l 96 (253)
...+...++|..++.-+..++++=+..+++-.+.+.... +....++++.++....+.-.... ...-.+...+
T Consensus 53 ~~~~~~~~ly~~fi~~f~~kin~L~lv~~~~~~~~~~~d-~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~ 131 (393)
T 4b4t_O 53 KSTPLRLRLYDNFVSKFYDKINQLSVVKYLLASLKDSKD-FDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDS 131 (393)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHTTC-HHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHH
T ss_pred hcchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC-HHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHH
Confidence 344556777777776664666654444443333332221 11223344433333322111100 1123455667
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHH
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKK 156 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~k 156 (253)
..+..|+..++.++|.++|+++...+...++.+ ...-.-+|-.=+++|...++...
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~----~~v~~~~y~~~~~~~~~~~~~a~ 187 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLEKTLDKKDSIP----LRITNSFYSTNSQYFKFKNDFNS 187 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSS----SHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhccCCcc----HHHHHHHHHHHHHHHHHhhhHHH
Confidence 889999999999999999999999988875432 12223444444555555555443
No 216
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=61.70 E-value=79 Score=27.32 Aligned_cols=54 Identities=15% Similarity=0.330 Sum_probs=41.2
Q ss_pred CCc-hhHHHHHHhhcccccc-----ccccHHHHH------HHHHHHhcccccccC--hhhHHHHHHHH
Q 025427 171 IPH-PRIMGIIRECGGKMHM-----AERQWADAA------TDFFEAFKNYDEAGN--QRRIQCLKYGF 224 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~-----~ekdy~tA~------s~F~EAFe~yde~g~--~~a~~~LKYlv 224 (253)
|+. ..++|+.|..|=.|=+ -.||++.|. .+.|..|..++--.+ .+|..++||-|
T Consensus 150 v~~edYLlGL~DLtGEL~R~ain~v~~Gd~~~~~~i~~fm~~Ly~~f~~Ln~~n~~LRkK~D~lk~sv 217 (249)
T 3axj_A 150 LDVEDYLLGILQLASELSRFATNSVTMGDYERPLNISHFIGDLNTGFRLLNLKNDGLRKRFDALKYDV 217 (249)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 555 8899999999976543 678888887 567788888774333 48899999976
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=60.01 E-value=44 Score=23.78 Aligned_cols=74 Identities=7% Similarity=-0.027 Sum_probs=46.6
Q ss_pred hHHHHHhhhcc---hhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCc
Q 025427 97 KLCKIWFDMGE---YGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPH 173 (253)
Q Consensus 97 kLa~l~l~~~~---y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~ 173 (253)
-++..++-.++ .++|..++++.++. |- .-+....+--.+++..++++++...|++.......-+.
T Consensus 11 ~~a~al~~~~~~~~~~~A~~~l~~AL~~-------dp-----~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~ 78 (93)
T 3bee_A 11 AKATTLYYLHKQAMTDEVSLLLEQALQL-------EP-----YNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD 78 (93)
T ss_dssp HHHHHHHHTTTTCCCHHHHHHHHHHHHH-------CT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHH-------Cc-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 34555542322 67888888887776 11 11223334467777888888888888888877666333
Q ss_pred -hhHHHHHHh
Q 025427 174 -PRIMGIIRE 182 (253)
Q Consensus 174 -P~i~g~I~e 182 (253)
+.|...|..
T Consensus 79 ~~~i~~~I~~ 88 (93)
T 3bee_A 79 RVTIIESINK 88 (93)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 666666654
No 218
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=58.98 E-value=88 Score=26.94 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHhhhcc---CCchhHHHHHHhhcccc----ccccccHHHHHHHHHHHhcccccccC
Q 025427 154 NKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKM----HMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~a---I~~P~i~g~I~e~~Gkl----~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
..++..+|..|..++.. -+||.-.|..--.|=-. +--++--+-|...|=+|....|..++
T Consensus 146 ~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~e 212 (234)
T 2br9_A 146 AENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSE 212 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCT
T ss_pred HHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCh
Confidence 45788999999999864 34799999887766433 33455556677788888888887644
No 219
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=58.84 E-value=1e+02 Score=27.73 Aligned_cols=92 Identities=7% Similarity=-0.068 Sum_probs=46.4
Q ss_pred hHHHHHhhhc---chhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh----cCHHHHHHHHHHHHhhhc
Q 025427 97 KLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET----KNNKKLKQLYQKALAIKS 169 (253)
Q Consensus 97 kLa~l~l~~~---~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~----~n~~klk~~y~~a~~~~~ 169 (253)
.|+.+|...| ++.+|...++...+. .+ .+ .. .+..=-.+|... +|..++...|.+|. ..
T Consensus 181 ~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g~--~~----a~---~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g 246 (452)
T 3e4b_A 181 ELATVYQKKQQPEQQAELLKQMEAGVSR---GT--VT----AQ---RVDSVARVLGDATLGTPDEKTAQALLEKIA--PG 246 (452)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHT---TC--SC----HH---HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--GG
T ss_pred HHHHHHHHcCCcccHHHHHHHHHHHHHC---CC--HH----HH---HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--CC
Confidence 6777777777 666666555444332 21 11 00 000011223222 67888888888875 21
Q ss_pred cCCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 170 AIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 170 aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
....-.-.|.+-..| ...+|+++|..+|-.|-+
T Consensus 247 ~~~a~~~Lg~~~~~~----~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 247 YPASWVSLAQLLYDF----PELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp STHHHHHHHHHHHHS----GGGCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHH
Confidence 111122333331111 237788888888877763
No 220
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=56.73 E-value=96 Score=26.70 Aligned_cols=56 Identities=11% Similarity=-0.030 Sum_probs=37.3
Q ss_pred hcCHHHHHHHHHHHHhhhcc---CCchhHHHHHHhhccccccccccHHHHHHHHHHHhc
Q 025427 151 TKNNKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFK 206 (253)
Q Consensus 151 ~~n~~klk~~y~~a~~~~~a---I~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe 206 (253)
.++..++..+|..|..++++ -+||.-.|..--.|=-.|=--++-+.|..==-+||.
T Consensus 138 ~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 138 LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34578899999999999875 346988888776654444344455555554444544
No 221
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=51.80 E-value=12 Score=28.16 Aligned_cols=67 Identities=24% Similarity=0.217 Sum_probs=43.6
Q ss_pred HHHHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHH
Q 025427 146 QMYTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCL 220 (253)
Q Consensus 146 ~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~L 220 (253)
.+|....+.+++...|.+|....++.. -...|.+-+.|- --++|+++|..+|-.|-+ .|++.+.-.|
T Consensus 33 ~~y~~g~~~~~A~~~~~~Aa~~g~~~a-~~~Lg~~y~~G~---g~~~d~~~A~~~~~~Aa~----~g~~~a~~~L 99 (138)
T 1klx_A 33 LVSNSQINKQKLFQYLSKACELNSGNG-CRFLGDFYENGK---YVKKDLRKAAQYYSKACG----LNDQDGCLIL 99 (138)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHTTCHHH-HHHHHHHHHHCS---SSCCCHHHHHHHHHHHHH----TTCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHcCC---CCCccHHHHHHHHHHHHc----CCCHHHHHHH
Confidence 456667789999999999876532211 223343333221 138999999999999976 3777775443
No 222
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=46.91 E-value=1.4e+02 Score=29.20 Aligned_cols=107 Identities=9% Similarity=0.114 Sum_probs=64.8
Q ss_pred hHHHHHhhhcchhHHHHHHHHHHHHccc--------CCCCch--hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Q 025427 97 KLCKIWFDMGEYGRMSKILKELHKSCQR--------EDGTDD--QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALA 166 (253)
Q Consensus 97 kLa~l~l~~~~y~~a~~li~~L~~~l~~--------~~~~dD--~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~ 166 (253)
.+|.+.-..|++++|..+.+.+...+.. .+.++. ...+.-.-+|+..=+++....+++.++|+++..|+.
T Consensus 383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~ 462 (679)
T 4e6h_A 383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR 462 (679)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666777788899998888887776421 110000 000112345666666777778999999999999988
Q ss_pred h-hccCCchhHHHHHHhhcccccc-ccccHHHHHHHHHHHhcccc
Q 025427 167 I-KSAIPHPRIMGIIRECGGKMHM-AERQWADAATDFFEAFKNYD 209 (253)
Q Consensus 167 ~-~~aI~~P~i~g~I~e~~Gkl~~-~ekdy~tA~s~F~EAFe~yd 209 (253)
. ....++-.+.. +.|-. ..+|++.|..-|-.+.+.|.
T Consensus 463 ~~~~~~~~lyi~~------A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 463 LKKLVTPDIYLEN------AYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp TGGGSCTHHHHHH------HHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred hcCCCChHHHHHH------HHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 7 22222222221 22221 24568888888888888764
No 223
>1j1j_A Translin; testis/brain RNA binding protein, ssDNA binding protein, RNA protein, DNA binding protein; 2.20A {Homo sapiens} SCOP: a.118.16.1 PDB: 3qb5_A 3pja_A 1key_A
Probab=44.43 E-value=1.5e+02 Score=25.35 Aligned_cols=54 Identities=11% Similarity=0.261 Sum_probs=40.1
Q ss_pred CCc-hhHHHHHHhhcccccc-----ccccHHHHHH------HHHHHhcccccccC--hhhHHHHHHHH
Q 025427 171 IPH-PRIMGIIRECGGKMHM-----AERQWADAAT------DFFEAFKNYDEAGN--QRRIQCLKYGF 224 (253)
Q Consensus 171 I~~-P~i~g~I~e~~Gkl~~-----~ekdy~tA~s------~F~EAFe~yde~g~--~~a~~~LKYlv 224 (253)
|+. ..++|+.|..|=.|=. -.||++.|.. +.|..|..++--.+ .+|..++||-|
T Consensus 147 v~~edYLlGL~DltGEL~R~avn~v~~Gd~~~~~~i~~fm~~Ly~~f~~Lnl~n~~LRkK~D~lk~~v 214 (240)
T 1j1j_A 147 LDVEDYLSGVLILASELSRLSVNSVTAGDYSRPLHISTFINELDSGFRLLNLKNDSLRKRYDGLKYDV 214 (240)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHTTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 555 7899999999976543 5678877764 56778888874322 48889999976
No 224
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=44.39 E-value=52 Score=25.66 Aligned_cols=48 Identities=21% Similarity=0.215 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 025427 7 EWGFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 58 (253)
Q Consensus 7 ew~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild 58 (253)
+-.-.++..|+--+++.|+|++++++...++..= |. |.-+..++.+|+
T Consensus 71 ~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~e-P~---n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 71 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-PQ---NNQAKELERLID 118 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CC---CHHHHHHHHHHH
Confidence 4566789999999999999999999999999877 65 445556666565
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=42.37 E-value=54 Score=26.33 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 58 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild 58 (253)
.-.++..|+-.|++.|+|++++++.+.++..= |. |.-+...++.++
T Consensus 70 ~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-P~---n~QA~~Lk~~ie 115 (152)
T 1pc2_A 70 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-PQ---NNQAKELERLID 115 (152)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TT---CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CC---CHHHHHHHHHHH
Confidence 45789999999999999999999999999876 64 333444444444
No 226
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=40.15 E-value=24 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.611 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
-.|++.++|..++.|+ ..|||-
T Consensus 13 ~~Eela~Y~~~LrhYi-NlvTRq 34 (36)
T 2bf9_A 13 PVEDLIRFYNDLQQYL-NVVTRH 34 (36)
T ss_dssp CHHHHHHHHHHHHHHH-HHHTTC
T ss_pred CHHHHHHHHHHHHHHH-HHHhcc
Confidence 5789999999999999 888873
No 227
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=38.50 E-value=2.2e+02 Score=25.67 Aligned_cols=102 Identities=8% Similarity=0.078 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh----h--hHHHHhhhHHHHHhhhcchhHHH---------
Q 025427 48 YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE----R--LWFKTNLKLCKIWFDMGEYGRMS--------- 112 (253)
Q Consensus 48 ~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e----r--l~lk~~lkLa~l~l~~~~y~~a~--------- 112 (253)
..+..+.+|++.++..|...+ .-.....++|+|+... . -.|- --+|..|.+.++|.+|.
T Consensus 92 ~~~~~~~rL~~L~~~~~~~~p----~r~~fi~~ai~WS~~~g~~~~Gdp~LH--~~ig~~~~~e~~~~~Ae~H~ilg~~~ 165 (336)
T 3lpz_A 92 VDGASRGKLLGCLRLFQPGEP----VRKRFVKEMIDWSKKFGDYPAGDPELH--HVVGTLYVEEGEFEAAEKHLVLGTKE 165 (336)
T ss_dssp CCHHHHHHHHHHHTTSCTTCH----HHHHHHHHHHHHHHHHSSCTTCCHHHH--HHHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred CCHHHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHccCCHHHHHHHHHhcCCc
Confidence 345667777777776654333 2346777888897741 1 2222 25677777778887772
Q ss_pred ---HHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHH-HHhhcCHHHHHHHHHH
Q 025427 113 ---KILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQM-YTETKNNKKLKQLYQK 163 (253)
Q Consensus 113 ---~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~-y~~~~n~~klk~~y~~ 163 (253)
.+.+=|.++.+..+ ..-.++++...-+ |-.++|++-++.++..
T Consensus 166 s~~~~a~mL~ew~~~~~--------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 166 SPEVLARMEYEWYKQDE--------SHTAPLYCARAVLPYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHHHHHHHHHTSC--------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 22333444433321 1223455555443 3456888888875443
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=38.27 E-value=2.9e+02 Score=26.96 Aligned_cols=60 Identities=15% Similarity=0.195 Sum_probs=41.2
Q ss_pred hHHHHHhhhc-chhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 97 KLCKIWFDMG-EYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 97 kLa~l~l~~~-~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
..|.+....+ ++++|.++.....+.+.. + ..+.++..-+|+ ..++..++|++|..|.+..
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~-----~---~~~w~~y~~fe~----~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFAT-----D---GEYINKYLDFLI----YVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHH----HHTCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----c---hHHHHHHHHHHH----hCCCHHHHHHHHHHHHHhc
Confidence 4555655554 489999999998888754 3 445444444444 4588999999999887643
No 229
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=37.78 E-value=2.1e+02 Score=25.04 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhhhccC--CchhHHHHHHhhcccc----ccccccHHHHHHHHHHHhcccccccC
Q 025427 154 NKKLKQLYQKALAIKSAI--PHPRIMGIIRECGGKM----HMAERQWADAATDFFEAFKNYDEAGN 213 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~aI--~~P~i~g~I~e~~Gkl----~~~ekdy~tA~s~F~EAFe~yde~g~ 213 (253)
..++..+|..|..+++.. +||.-.|..--.|=-. ..-++--.-|...|=+|....|..+.
T Consensus 172 ~e~a~~aY~~A~~iA~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~e 237 (260)
T 2npm_A 172 AEDALKAYKDATVVAKDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSE 237 (260)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCT
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCCh
Confidence 457889999999998434 3699999887766433 33455556677788889888887644
No 230
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=35.73 E-value=70 Score=30.20 Aligned_cols=168 Identities=11% Similarity=0.125 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhh--h-hhhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhh
Q 025427 12 ALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVT--R-NYSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNE 88 (253)
Q Consensus 12 Alkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~--k-a~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~e 88 (253)
++..+|..++..|+++++..+|.+.-.+.+-.-+ + ..-+.+|..... .. +++.-..+...|.+.=+|-...
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~K----A~--~~~~Wk~v~~aCv~~~ef~lA~ 197 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK----AN--STRTWKEVCFACVDGKEFRLAQ 197 (449)
T ss_dssp -------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHH----HT--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHH----cC--CchhHHHHHHHHHHcCcHHHHH
Confidence 7888999999999999999999876433210000 0 001122211111 11 1222233333333322222222
Q ss_pred hhHHHH------hhhHHHHHhhhcchhHHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhhcCHHHHHHHHH
Q 025427 89 RLWFKT------NLKLCKIWFDMGEYGRMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQ 162 (253)
Q Consensus 89 rl~lk~------~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~ 162 (253)
+..+.. ...++++|-..|.+++|..+++.-... |+.. -....|+-.+.++. +..|+...+.
T Consensus 198 ~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l-------e~ah-~~~ftel~il~~ky-----~p~k~~ehl~ 264 (449)
T 1b89_A 198 MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-------ERAH-MGMFTELAILYSKF-----KPQKMREHLE 264 (449)
T ss_dssp HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-------TTCC-HHHHHHHHHHHHTT-----CHHHHHHHHH
T ss_pred HHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC-------cHHH-HHHHHHHHHHHHhc-----CHHHHHHHHH
Confidence 222211 116778999999999998888776644 3322 22233443333322 4555555444
Q ss_pred HHHhhhccCCchhHHHHHHhhc--------cccccccccHHHHHHHHHHH
Q 025427 163 KALAIKSAIPHPRIMGIIRECG--------GKMHMAERQWADAATDFFEA 204 (253)
Q Consensus 163 ~a~~~~~aI~~P~i~g~I~e~~--------Gkl~~~ekdy~tA~s~F~EA 204 (253)
.-.+.|..|++ |+.|. .-+|.+-++|+.|-.--.+.
T Consensus 265 ---~~~~~ini~k~---~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 265 ---LFWSRVNIPKV---LRAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp ---HHSTTSCHHHH---HHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ---HHHHHhcCcHH---HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 23345555553 33333 23455667777776665554
No 231
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.26 E-value=2.1e+02 Score=24.28 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=30.3
Q ss_pred hHHHHhhhHHHHHhhhcchhHHHHHHHHHHHHcccCC
Q 025427 90 LWFKTNLKLCKIWFDMGEYGRMSKILKELHKSCQRED 126 (253)
Q Consensus 90 l~lk~~lkLa~l~l~~~~y~~a~~li~~L~~~l~~~~ 126 (253)
-|+..-+--..+.+..++|++|.++|.++.+.++...
T Consensus 16 ~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~ 52 (235)
T 2d2s_A 16 KFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLS 52 (235)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCc
Confidence 4566656667788899999999999999999988764
No 232
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=34.21 E-value=93 Score=23.04 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=25.6
Q ss_pred HHHHhhhcchhHHHHHHHHHHHHcccCCCC
Q 025427 99 CKIWFDMGEYGRMSKILKELHKSCQREDGT 128 (253)
Q Consensus 99 a~l~l~~~~y~~a~~li~~L~~~l~~~~~~ 128 (253)
+++|+..++.+....+|.+||+.+++.|.+
T Consensus 17 sr~~f~~~n~~~m~~~L~pLh~~l~~~peT 46 (94)
T 3fap_B 17 SRLYFGERNVKGMFEVLEPLHAMMERGPQT 46 (94)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHhccCCHHHHHHHHHHHHHHHcCCCCC
Confidence 367888999999999999999999986543
No 233
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=33.07 E-value=1.9e+02 Score=23.09 Aligned_cols=65 Identities=11% Similarity=0.029 Sum_probs=43.0
Q ss_pred HHhhhHHHHHhhhc---chhHHHHHHHHHHHHcccCCCCchh-hhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhh
Q 025427 93 KTNLKLCKIWFDMG---EYGRMSKILKELHKSCQREDGTDDQ-KKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIK 168 (253)
Q Consensus 93 k~~lkLa~l~l~~~---~y~~a~~li~~L~~~l~~~~~~dD~-~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~ 168 (253)
.+..++|-.+...+ ++++++.+++++.+. +++ .+. |.+=.=.-.|++++|+.+++.....++.+.
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-------~~p~~~r----d~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie 101 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-------GSKEEQR----DYVFYLAVGNYRLKEYEKALKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------SCHHHHH----HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-------CCccchH----HHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34457777777776 888999999999887 311 112 222333445577778888887777777654
No 234
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=32.33 E-value=36 Score=21.74 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhh
Q 025427 24 GKYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
...+++.+++..++.|+ ..|||.
T Consensus 16 aspEela~Y~~~Lr~Yi-nlvTR~ 38 (41)
T 2l60_A 16 LSPEELNRYYASLRHYL-NLVTRQ 38 (41)
T ss_dssp SCHHHHHHHHHHHHHHH-HHHTTT
T ss_pred CCHHHHHHHHHHHHHHH-HHhccc
Confidence 46889999999999999 888874
No 235
>2jxc_B Stonin-2, stoned B; endocytosis, calcium, chromosomal rearrangement, cytoplasm, membrane, phosphorylation, polymorphism, proto-oncogene; NMR {Homo sapiens}
Probab=32.31 E-value=8.7 Score=24.70 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=10.0
Q ss_pred cCCCchHHHHHH
Q 025427 231 LISIYFLYLYFL 242 (253)
Q Consensus 231 ~s~id~~~~~~~ 242 (253)
-|+||||+.||=
T Consensus 30 PSPINPFsafFe 41 (45)
T 2jxc_B 30 PSPINPFSAFFE 41 (45)
T ss_dssp CCTTCSCTTHHH
T ss_pred CCCCChHHHhhh
Confidence 489999999984
No 236
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=31.47 E-value=31 Score=27.09 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=24.8
Q ss_pred cchhHHHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYR-LGKYKEMMDAYR 34 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~-~~~~~~~~~~~~ 34 (253)
+..+|..||++.|+|-+-+ .++.|.+.+.++
T Consensus 17 ~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~ 48 (124)
T 3kmp_A 17 EEEKWAEKAVDALVKKLKKKKGAMEELEKALS 48 (124)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHhccchHHHHHHHHh
Confidence 5678999999999999877 577777766654
No 237
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=31.37 E-value=25 Score=21.89 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRN 47 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka 47 (253)
-.|++.+++..++.|+ ..|||-
T Consensus 13 ~pEela~Y~~~Lr~Yi-NlvTRq 34 (36)
T 1bba_A 13 TPEQMAQYAAELRRYI-NMLTRP 34 (36)
T ss_dssp STTHHHHHHHHHHHHH-HHHCCC
T ss_pred CHHHHHHHHHHHHHHH-HHhhcc
Confidence 4689999999999999 878763
No 238
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=30.47 E-value=29 Score=21.72 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHHHhhhhhhhhh
Q 025427 25 KYKEMMDAYREMLTYIKSAVTRNY 48 (253)
Q Consensus 25 ~~~~~~~~~~~ll~~~~~~v~ka~ 48 (253)
..|++.+++..++.|+ ..|||-+
T Consensus 13 ~pEela~Y~~~Lr~Yi-nlvTRqR 35 (37)
T 1f8p_A 13 PAEDLARYYSALRHYI-NLITRQR 35 (37)
T ss_dssp TTTTHHHHHHHHHHHH-HHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HHhcccc
Confidence 4678999999999999 8888753
No 239
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=30.34 E-value=2.1e+02 Score=22.83 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=33.3
Q ss_pred hHHHHHhhhcchh----------HHHHHHHHHHHHcccCCCCchhhhcchHHHHHHHHHHHHHhh-----------cCHH
Q 025427 97 KLCKIWFDMGEYG----------RMSKILKELHKSCQREDGTDDQKKGSQLLEVYAIEIQMYTET-----------KNNK 155 (253)
Q Consensus 97 kLa~l~l~~~~y~----------~a~~li~~L~~~l~~~~~~dD~~kk~~LlEv~~lE~~~y~~~-----------~n~~ 155 (253)
+++.++.+.++++ +|+..+++..+- .+. ..+.+----.+|+.+ +++.
T Consensus 41 n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP~---------~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~ 108 (158)
T 1zu2_A 41 RWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DPK---------KDEAVWCIGNAYTSFAFLTPDETEAKHNFD 108 (158)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CTT---------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---CcC---------cHHHHHHHHHHHHHhcccCcchhhhhccHH
Confidence 5666777777664 666555555554 111 122333333444444 3677
Q ss_pred HHHHHHHHHHhhh
Q 025427 156 KLKQLYQKALAIK 168 (253)
Q Consensus 156 klk~~y~~a~~~~ 168 (253)
++...|.+|..+.
T Consensus 109 eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 109 LATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 7777777777654
No 240
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=29.82 E-value=1.5e+02 Score=21.30 Aligned_cols=20 Identities=15% Similarity=0.350 Sum_probs=17.9
Q ss_pred HHhCCHHHHHHHHHHHHHHh
Q 025427 21 YRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 21 ~~~~~~~~~~~~~~~ll~~~ 40 (253)
=+.|++++++.+|.+-+.++
T Consensus 27 D~~g~y~eAl~lY~~Aie~l 46 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGIDLL 46 (86)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHH
Confidence 46799999999999999888
No 241
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.14 E-value=1.9e+02 Score=22.08 Aligned_cols=74 Identities=5% Similarity=0.085 Sum_probs=45.6
Q ss_pred CCHHHHHHHHHHHHHHhhhhhhhh---hhHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHhhhhhhHHHHhhhHHH
Q 025427 24 GKYKEMMDAYREMLTYIKSAVTRN---YSEKCINNIMDFVSGSASQNFSLLREFYQTTLKALEEAKNERLWFKTNLKLCK 100 (253)
Q Consensus 24 ~~~~~~~~~~~~ll~~~~~~v~ka---~~~K~i~~ild~~s~~~~~~~~~l~~~y~~~~e~i~~a~~erl~lk~~lkLa~ 100 (253)
...+.+...+.++++...+...|. -++|-++-+.|..... +-+...+..+.+++..
T Consensus 13 ~~i~~l~~~l~~~l~~~~~~~~k~~~~D~~KRL~~LfdkLn~~-~Ls~~v~~~L~~l~~a-------------------- 71 (118)
T 2yru_A 13 TLIEDVLRPLEQALEDCHGHTKKQVCDDISRRLALLREQWAGG-KLSIPVKKRMALLVQE-------------------- 71 (118)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHT-CSCHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH--------------------
Confidence 345677777887777653344433 4677777777777642 2234445555555543
Q ss_pred HHhhhcchhHHHHHHHHHHH
Q 025427 101 IWFDMGEYGRMSKILKELHK 120 (253)
Q Consensus 101 l~l~~~~y~~a~~li~~L~~ 120 (253)
++.++|..|..+-.+|-.
T Consensus 72 --l~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 72 --LLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp --HHHTCHHHHHHHHHHHHH
T ss_pred --HHcCCHHHHHHHHHHHHH
Confidence 466788888777666665
No 242
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=27.35 E-value=51 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhhHHHHHhhhcchhHH----HHHHHHHHHHcccCCCCchhhhcc
Q 025427 95 NLKLCKIWFDMGEYGRM----SKILKELHKSCQREDGTDDQKKGS 135 (253)
Q Consensus 95 ~lkLa~l~l~~~~y~~a----~~li~~L~~~l~~~~~~dD~~kk~ 135 (253)
++++|+=|--.|+|+.| ...++++.+.+... +|+.++.
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~---~d~~~r~ 56 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV---KDTHLRQ 56 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC---SCHHHHH
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc---CCHHHHH
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=26.90 E-value=1e+02 Score=24.38 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 58 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild 58 (253)
+=..+..|+--+++.|+|+.++++...++..= |. |.-+..++.+|+
T Consensus 77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e-P~---N~QA~~Lk~~Ie 122 (134)
T 3o48_A 77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RN---NKQVGALKSMVE 122 (134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-TT---CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC-CC---CHHHHHHHHHHH
Confidence 44567778888888888888888887777655 44 445555555555
No 244
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=25.67 E-value=93 Score=28.60 Aligned_cols=75 Identities=13% Similarity=0.156 Sum_probs=54.8
Q ss_pred HHhhcCHHHHHHHHHHHHhhhccCCchhHHHHHHhhccccccccccHHHHHHHHHHHhcccccccChhhHHHHHHHHHHH
Q 025427 148 YTETKNNKKLKQLYQKALAIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNQRRIQCLKYGFYLH 227 (253)
Q Consensus 148 y~~~~n~~klk~~y~~a~~~~~aI~~P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde~g~~~a~~~LKYlvL~~ 227 (253)
+...+++..+.+.+.+|..+.+ ...+- ...|+++...|+++.|-..|.+||+ .+ .+ ++ -|+..++
T Consensus 287 ~l~~gd~d~A~~~l~rAl~Ln~-----s~~a~--~llG~~~~~~G~~~eA~e~~~~Alr-L~-P~-~~-----t~~~~~~ 351 (372)
T 3ly7_A 287 ALVKGKTDESYQAINTGIDLEM-----SWLNY--VLLGKVYEMKGMNREAADAYLTAFN-LR-PG-AN-----TLYWIEN 351 (372)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCC-----CHHHH--HHHHHHHHHTTCHHHHHHHHHHHHH-HS-CS-HH-----HHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHhcCC-----CHHHH--HHHHHHHHHCCCHHHHHHHHHHHHh-cC-CC-cC-----hHHHHhC
Confidence 3446899999999999999863 22222 5678888899999999999999998 22 12 22 2777788
Q ss_pred HhccCCCchH
Q 025427 228 LLFLISIYFL 237 (253)
Q Consensus 228 iL~~s~id~~ 237 (253)
+.-.|.+...
T Consensus 352 l~F~sn~~~i 361 (372)
T 3ly7_A 352 GIFQTSVPYV 361 (372)
T ss_dssp SSSCCCHHHH
T ss_pred ceeecchhhh
Confidence 8777665543
No 245
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=25.55 E-value=1.1e+02 Score=24.57 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHH
Q 025427 9 GFKALKQTVKLYYRLGKYKEMMDAYREMLTYIKSAVTRNYSEKCINNIMD 58 (253)
Q Consensus 9 ~fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~~~~v~ka~~~K~i~~ild 58 (253)
+=..+..|+--+++.|+|++++++...++..= |. |.-+..++.+|+
T Consensus 76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~---n~QA~~Lk~~Ie 121 (144)
T 1y8m_A 76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RN---NKQVGALKSMVE 121 (144)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CC---CHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CC---cHHHHHHHHHHH
Confidence 34578889999999999999999999988776 54 555666666665
No 246
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=24.43 E-value=15 Score=23.12 Aligned_cols=10 Identities=60% Similarity=1.145 Sum_probs=7.6
Q ss_pred HHHHHHhcCC
Q 025427 244 RIICLFVFGF 253 (253)
Q Consensus 244 ~~~~~~~~~~ 253 (253)
-.++||+|||
T Consensus 14 ffvsLFiFGf 23 (38)
T 3arc_I 14 FFVLLFVFGF 23 (38)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHccc
Confidence 3578899986
No 247
>2z3q_A Interleukin-15, IL-15; protein-protein complex, cytokine/cytokine receptor complex; 1.85A {Homo sapiens} SCOP: a.26.1.2 PDB: 2z3r_A 2xqb_A 2psm_A
Probab=23.44 E-value=2e+02 Score=22.30 Aligned_cols=101 Identities=14% Similarity=0.224 Sum_probs=52.5
Q ss_pred cchhHHHHHHHHHHHHcccC--CC-----Cch-hhhcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhhhccCCchhHH
Q 025427 106 GEYGRMSKILKELHKSCQRE--DG-----TDD-QKKGSQLLEVYAIEIQMYTETKNNKKLKQLYQKALAIKSAIPHPRIM 177 (253)
Q Consensus 106 ~~y~~a~~li~~L~~~l~~~--~~-----~dD-~~kk~~LlEv~~lE~~~y~~~~n~~klk~~y~~a~~~~~aI~~P~i~ 177 (253)
++++..+.-|+.+....+.. |. +|+ +.=+...+.+|++|+++-..--+.++.....+-....+|+-..| -
T Consensus 5 ~~w~~vi~DLe~i~~~~~s~~iDa~LYTpsd~~~~C~~~~L~CfllEL~vV~~E~~~~ei~~tv~nii~l~N~~l~~--~ 82 (119)
T 2z3q_A 5 SNWVNVISDLKKIEDLIQSMHIDATLYTESDVHPSCKVTAMKCFLLELQVISLESGDASIHDTVENLIILANNSLSS--N 82 (119)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCCEEECSSCCGGGHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCC----
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceeecCCCCchhHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHhhhcccCc--C
Confidence 34555555555555554222 11 122 44456679999999998766544466665555555555553332 1
Q ss_pred HHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 178 GIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 178 g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
|.+-+-|-+ -+|..=++-+.+|.++|.++-+
T Consensus 83 ~~~t~s~Ck--~CEe~eeKn~~eFL~~f~~~lq 113 (119)
T 2z3q_A 83 GNVTESGCK--ECEELEEKNIKEFLQSFVHIVQ 113 (119)
T ss_dssp ---CCCSCC--CGGGSEEECHHHHHHHHHHHHH
T ss_pred CCcCCCCCC--chHhccccCHHHHHHHHHHHHH
Confidence 222222222 2233333456688888887643
No 248
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=23.26 E-value=3e+02 Score=25.85 Aligned_cols=26 Identities=8% Similarity=0.077 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Q 025427 14 KQTVKLYYRLGKYKEMMDAYREMLTY 39 (253)
Q Consensus 14 kql~kl~~~~~~~~~~~~~~~~ll~~ 39 (253)
+++++.+.+.++++.+.+.|.++-.+
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~ 710 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDL 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccCh
Confidence 57777777777777777777765443
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=23.19 E-value=3.8e+02 Score=26.41 Aligned_cols=31 Identities=10% Similarity=0.060 Sum_probs=23.3
Q ss_pred hhHHHHhhhHHHHH--hhhcchhHHHHHHHHHH
Q 025427 89 RLWFKTNLKLCKIW--FDMGEYGRMSKILKELH 119 (253)
Q Consensus 89 rl~lk~~lkLa~l~--l~~~~y~~a~~li~~L~ 119 (253)
|--+++-++++..+ +..|+|++|+..|++|.
T Consensus 533 ~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L~ 565 (661)
T 2qx5_A 533 KEICMLLLNISSIRELYFNKQWQETLSQMELLD 565 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 33455555666666 99999999999998864
No 250
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=22.47 E-value=95 Score=19.94 Aligned_cols=32 Identities=31% Similarity=0.466 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhhccCCchh------HHHHHHhhcc
Q 025427 154 NKKLKQLYQKALAIKSAIPHPR------IMGIIRECGG 185 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~aI~~P~------i~g~I~e~~G 185 (253)
..+.|+++.+.+..++.||-|- |+|+.+..+|
T Consensus 4 WErVk~ilks~l~a~S~iPGPVG~~asGi~~l~~l~~~ 41 (44)
T 2z2q_B 4 WERVKSIIKSSLAAASNIPGPIGVAASGISGLSALFEG 41 (44)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHhHHHHHHHHHH
Confidence 4678999999999999999875 5555555444
No 251
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=21.76 E-value=2.5e+02 Score=21.87 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+.+|....++++..++.++|++.+..+-..+
T Consensus 40 ~e~LeeASrlyf~~~n~~~m~~~L~pLh~~l 70 (126)
T 2npu_A 40 HEGLEEASRLYFGERNVKGMFEVLEPLHAMM 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 4689999999999999999999997776666
No 252
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=21.34 E-value=1e+02 Score=24.76 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=25.2
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 025427 4 EKAEWGFKALKQTVKLYYRLGKYKEMMDAYRE 35 (253)
Q Consensus 4 ~~~ew~fkAlkql~kl~~~~~~~~~~~~~~~~ 35 (253)
+..+|..||++.|+|-+-+.++.|++.+.+++
T Consensus 26 ~~e~~~~kai~sLvKkLK~~~~Le~L~~AV~s 57 (144)
T 1ozj_A 26 QEEKWCEKAVKSLVKKLKKTGQLDELEKAITT 57 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcccccHHHHHHHHhC
Confidence 45679999999999998885678777766643
No 253
>3fap_B FRAP, FKBP12-rapamycin associated protein; complex, gene therapy, cell cycle; HET: ARD; 1.85A {Homo sapiens} SCOP: a.24.7.1 PDB: 2fap_B* 2rse_B 1nsg_B* 4fap_B* 1aue_A 2gaq_A 1fap_B*
Probab=20.71 E-value=2e+02 Score=21.11 Aligned_cols=31 Identities=16% Similarity=0.403 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Q 025427 10 FKALKQTVKLYYRLGKYKEMMDAYREMLTYI 40 (253)
Q Consensus 10 fkAlkql~kl~~~~~~~~~~~~~~~~ll~~~ 40 (253)
+.+|....++|+..++.++|++.+..+-..+
T Consensus 10 ~e~LeeAsr~~f~~~n~~~m~~~L~pLh~~l 40 (94)
T 3fap_B 10 HEGLEEASRLYFGERNVKGMFEVLEPLHAMM 40 (94)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 4688999999999999999999988887776
No 254
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=20.52 E-value=3.2e+02 Score=21.65 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=30.6
Q ss_pred cCHHHHHHHHHHHHhhhccCCc-hhHHHHHHhhccccccccccHHHHHHHHHHHhccccc
Q 025427 152 KNNKKLKQLYQKALAIKSAIPH-PRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDE 210 (253)
Q Consensus 152 ~n~~klk~~y~~a~~~~~aI~~-P~i~g~I~e~~Gkl~~~ekdy~tA~s~F~EAFe~yde 210 (253)
+.+.++...|.+|..+...-+. =.-.|.+-..-|.+ .-+|..|..+|-||.+.|..
T Consensus 60 ~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l---~P~~~~a~g~~~eA~~~~~k 116 (158)
T 1zu2_A 60 QMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFL---TPDETEAKHNFDLATQFFQQ 116 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhccc---CcchhhhhccHHHHHHHHHH
Confidence 3477899999999988655332 12234333322322 33555555555555555553
No 255
>3qb5_K Translin-associated protein X; alpha helical bundle, ribonuclease, hydrolase; 2.95A {Homo sapiens} PDB: 3pja_J
Probab=20.25 E-value=70 Score=28.33 Aligned_cols=55 Identities=15% Similarity=0.328 Sum_probs=42.5
Q ss_pred cCCc-hhHHHHHHhhcccccc-----ccccHHHHH------HHHHHHhcccccccC---hhhHHHHHHHH
Q 025427 170 AIPH-PRIMGIIRECGGKMHM-----AERQWADAA------TDFFEAFKNYDEAGN---QRRIQCLKYGF 224 (253)
Q Consensus 170 aI~~-P~i~g~I~e~~Gkl~~-----~ekdy~tA~------s~F~EAFe~yde~g~---~~a~~~LKYlv 224 (253)
.|+. ..++|+.|+.|=.|=+ -.||+++|. .+.|..|..++.-++ .+|..++||-|
T Consensus 181 ~V~~eDYLlGL~DLtGELmR~ainsv~~Gd~~~~~~i~~fm~~Ly~gf~~L~~~~~~~LrKK~d~lk~sv 250 (290)
T 3qb5_K 181 RVTPVDYLLGVADLTGELMRMCINSVGNGDIDTPFEVSQFLRQVYDGFSFIGNTGPYEVSKKLYTLKQSL 250 (290)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHH
Confidence 3555 8899999999976643 468888775 567888888876665 48899999976
No 256
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=20.14 E-value=4.3e+02 Score=22.93 Aligned_cols=59 Identities=22% Similarity=0.233 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhhhcc---CCchhHHHHHHhhccccc----cccccHHHHHHHHHHHhccccccc
Q 025427 154 NKKLKQLYQKALAIKSA---IPHPRIMGIIRECGGKMH----MAERQWADAATDFFEAFKNYDEAG 212 (253)
Q Consensus 154 ~~klk~~y~~a~~~~~a---I~~P~i~g~I~e~~Gkl~----~~ekdy~tA~s~F~EAFe~yde~g 212 (253)
..++..+|..|..++.. -+||.-.|..--.|=-.| --++--.-|...|=+|....|..+
T Consensus 151 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~ 216 (260)
T 1o9d_A 151 AESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLG 216 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccC
Confidence 45688999999999864 347999998877664333 344445566677888877776553
Done!