BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025428
(253 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408
Length = 215
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK- 226
+L +G GN L EL GF ++T VDYS + Q+ ++ + L + +D +
Sbjct: 46 ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQAC-----YAHVPQLRWETMDVRK 100
Query: 227 ---LERQFQLVMDKGTLDAI 243
F +V++KGTLDA+
Sbjct: 101 LDFPSASFDVVLEKGTLDAL 120
>pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases
Q8puk2_metma From Methanosarcina Mazei. Northeast
Structural Genomics Consortium Target Mar262
Length = 235
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
+LDIG G+G + EL+ +G+S +TG+D + +AI LA++ A G +
Sbjct: 34 ILDIGCGSGKISLELASKGYS-VTGIDINSEAIRLAETAARSPGLN 78
>pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|B Chain B, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
pdb|1WZN|C Chain C, Crystal Structure Of The Sam-Dependent Methyltransferase
From Pyrococcus Horikoshii Ot3
Length = 252
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
VLD+ G G+ EL+++G+ ++ G+D E+ + +A+ A I+FL DVL+
Sbjct: 44 RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101
Query: 227 LERQFQLV 234
+ +F V
Sbjct: 102 FKNEFDAV 109
>pdb|1G6Q|1 Chain 1, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|2 Chain 2, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|3 Chain 3, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|4 Chain 4, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|5 Chain 5, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
pdb|1G6Q|6 Chain 6, Crystal Structure Of Yeast Arginine Methyltransferase,
Hmt1
Length = 328
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
VLD+G G G+L +K G + GVD S I +A+ L +GFS
Sbjct: 42 VLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFS 86
>pdb|4DZR|A Chain A, The Crystal Structure Of Protein-(Glutamine-N5)
Methyltransferase (Release Factor-Specific) From
Alicyclobacillus Acidocaldarius Subsp. Acidocaldarius
Dsm 446
Length = 215
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 156 VEENDKYL----SSWSVLDIGTGNGLLLQE--LSKQGFSDLTGVDYSEDAINLAQSLANR 209
VEE ++L S V+D+GTG+G + L+ G S +T VD S DA+ +A+ A R
Sbjct: 18 VEEAIRFLKRXPSGTRVIDVGTGSGCIAVSIALACPGVS-VTAVDLSXDALAVARRNAER 76
Query: 210 DG 211
G
Sbjct: 77 FG 78
>pdb|1T43|A Chain A, Crystal Structure Analysis Of E.Coli Protein
(N5)-Glutamine Methyltransferase (Hemk)
Length = 277
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 168 VLDIGTGNGLLLQEL-SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
+LD+GTG G + L S++ ++ VD DA++LAQ A I L D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172
Query: 227 LERQFQLVM 235
+QF +++
Sbjct: 173 AGQQFAMIV 181
>pdb|2B3T|A Chain A, Molecular Basis For Bacterial Class 1 Release Factor
Methylation By Prmc
Length = 276
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 168 VLDIGTGNGLLLQEL-SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
+LD+GTG G + L S++ ++ VD DA++LAQ A I L D
Sbjct: 113 ILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL 172
Query: 227 LERQFQLVM 235
+QF +++
Sbjct: 173 AGQQFAMIV 181
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDY 195
IS++Q M V LK ++ V+D+G G G LL+ L K F + +TGVD
Sbjct: 11 ISLNQQRMNGVVAALKQS---------NARRVIDLGCGQGNLLKILLKDSFFEQITGVDV 61
Query: 196 SEDAINLAQSLANR 209
S ++ +AQ +R
Sbjct: 62 SYRSLEIAQERLDR 75
>pdb|4AZW|A Chain A, Crystal Structure Of Monomeric Wbdd
Length = 471
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV---DDVL 223
+VLD+G G L+ +G + + G+D+ ++ IN+ ++LA + +F V ++V+
Sbjct: 69 NVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI 127
Query: 224 DTKLERQFQLVMDKGTLDAI 243
E +F L + I
Sbjct: 128 AALEEGEFDLAIGLSVFHHI 147
>pdb|3DLI|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
pdb|3DLI|C Chain C, Crystal Structure Of A Sam Dependent Methyltransferase
From Archaeoglobus Fulgidus
Length = 240
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVDDVLD 224
VLDIG G G L+ ++G + GVD +ED I + ++ D +K L D LD
Sbjct: 45 VLDIGCGRGEFLELCKEEGIESI-GVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLD 103
>pdb|4AZS|A Chain A, High Resolution (2.2 A) Crystal Structure Of Wbdd.
pdb|4AZT|A Chain A, Co-Crystal Structure Of Wbdd And Kinase Inhibitor
Ly294002.
pdb|4AZV|A Chain A, Co-crystal Structure Of Wbdd And Kinase Inhibitor
Gw435821x
Length = 569
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
+VLD+G G L+ +G + + G+D+ ++ IN+ ++LA + +F V +
Sbjct: 69 NVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRI---- 123
Query: 227 LERQFQLVMDKGTLD-AIGL 245
+ +++G D AIGL
Sbjct: 124 --EEVIAALEEGEFDLAIGL 141
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD-LTGVDY 195
IS++Q M V LK ++ V+D+G G G LL+ L K F + +TGVD
Sbjct: 1 ISLNQQRMNGVVAALKQS---------NARRVIDLGCGQGNLLKILLKDSFFEQITGVDV 51
Query: 196 SEDAINLAQSLANR 209
S ++ +AQ +R
Sbjct: 52 SYRSLEIAQERLDR 65
>pdb|4AX8|A Chain A, Medium Resolution Structure Of The Bifunctional Kinase-
Methyltransferase Wbdd
Length = 569
Score = 32.3 bits (72), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 41/80 (51%), Gaps = 8/80 (10%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
+VLD+G G L+ +G + + G+D+ ++ IN+ ++LA + +F V + +
Sbjct: 69 NVLDLGCAQGFFSLSLASKG-ATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVI 127
Query: 227 LERQFQLVMDKGTLD-AIGL 245
+++G D AIGL
Sbjct: 128 ------AALEEGEFDLAIGL 141
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 32.3 bits (72), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 167 SVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
+VLD+GTG G L LSK + +D E+ +N A N+ G ++ L
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVL 93
>pdb|1NE2|A Chain A, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
pdb|1NE2|B Chain B, Crystal Structure Of Thermoplasma Acidophilum 1320
(Apc5513)
Length = 200
Score = 31.6 bits (70), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 141 QGHMLNHVEDLKSEPVEE--------NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTG 192
QG+ N++E ++ ND + SV+D GTGNG+L G +T
Sbjct: 20 QGNFKNYLEQYPTDASTAAYFLIEIYNDGNIGGRSVIDAGTGNGILACGSYLLGAESVTA 79
Query: 193 VDYSEDAINLAQSLANRDGFSC--IKFLVDDV 222
D DAI A+ +C + F V DV
Sbjct: 80 FDIDPDAIETAKR-------NCGGVNFXVADV 104
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 31.6 bits (70), Expect = 0.48, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 500 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 551
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 552 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 586
>pdb|2FYT|A Chain A, Human Hmt1 Hnrnp Methyltransferase-Like 3 (S. Cerevisiae)
Protein
pdb|3SMQ|A Chain A, Crystal Structure Of Protein Arginine Methyltransferase 3
pdb|4HSG|A Chain A, Crystal Structure Of Human Prmt3 In Complex With An
Allosteric Inhibitor (Prmt3- Ktd)
Length = 340
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
S GH H E LK + + +N VLD+G G G+L +K G +
Sbjct: 32 SYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 91
Query: 192 GVDYSE---DAINLAQSLANRDGFSCIKFLVDDV 222
GVD SE A+++ + D + IK +++V
Sbjct: 92 GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEV 125
>pdb|3IZB|Q Chain Q, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|K Chain K, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|R Chain R, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 136
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 128 VASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL 178
+A +T L I +G + L+ E E D+Y+ S LD+ NG+L
Sbjct: 50 IAGYTTHLMKRIQKGPVRGISFKLQEEERERKDQYVPEVSALDLSRSNGVL 100
>pdb|1RI1|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI2|A Chain A, Structure And Mechanism Of Mrna Cap (guanine N-7)
Methyltransferase
pdb|1RI3|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI4|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1RI5|A Chain A, Structure And Mechanism Of Mrna Cap (Guanine N-7)
Methyltransferase
pdb|1Z3C|A Chain A, Encephalitozooan Cuniculi Mrna Cap (Guanine-N7)
Methyltransferasein Complexed With Azoadomet
pdb|2HV9|A Chain A, Encephalitozoon Cuniculi Mrna Cap (Guanine-N7)
Methyltransferase In Complex With Sinefungin
Length = 298
Score = 30.4 bits (67), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
SVLD+G G G L + + G + GVD +E +IN A+ A
Sbjct: 67 SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRAR 108
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 329 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 380
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQ 232
D +D L R+G+SC+ + + LD KL RQ Q
Sbjct: 381 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKLNTAVRQVQ 423
>pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|1XXL|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis At 2.1 A Resolution
pdb|2GLU|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
pdb|2GLU|B Chain B, The Crystal Structure Of Ycgj Protein From Bacillus
Subitilis
Length = 239
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKF 217
VLDIG G G S + GVD +++ + +A S A G ++F
Sbjct: 25 VLDIGAGAGHTALAFSPY-VQECIGVDATKEXVEVASSFAQEKGVENVRF 73
>pdb|2P7H|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|C Chain C, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7H|D Chain D, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.85 A Resolution
pdb|2P7I|A Chain A, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
pdb|2P7I|B Chain B, Crystal Structure Of A Sam Dependent Methyl-Transferase
Type 12 Family Protein (Eca1738) From Pectobacterium
Atrosepticum Scri1043 At 1.74 A Resolution
Length = 250
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
V + ++L++G+ G L ++ F+D+T V+ SE+AI+ AQ +DG I
Sbjct: 34 VRAFTPFFRPGNLLELGSFKGDFTSRL-QEHFNDITCVEASEEAISHAQGRL-KDG---I 88
Query: 216 KFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
++ D +L R++ ++ L+ I P LKR
Sbjct: 89 TYIHSRFEDAQLPRRYDNIVLTHVLEHID-DPVALLKR 125
>pdb|1F3L|A Chain A, Crystal Structure Of The Conserved Core Of Protein
Arginine Methyltransferase Prmt3
Length = 321
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
S GH H E LK + + +N VLD+G G G+L +K G +
Sbjct: 13 SYGHYGIHEEMLKDKVRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVI 72
Query: 192 GVDYSE 197
VD SE
Sbjct: 73 AVDQSE 78
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 329 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 380
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 381 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 329 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 380
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 381 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 329 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 380
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 381 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 415
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 378 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 429
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 430 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 464
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 382 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 433
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 434 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 468
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 15/95 (15%)
Query: 140 SQGHMLNHVEDLKSEPVEENDKYLSS-------WSVLDIGTGNGLLLQELSKQGFSDLTG 192
+QG + +++L++ P +D YLSS W ++ N L LS L
Sbjct: 330 TQGKLEEKLQELEANP--PSDVYLSSRDRQILDWHFANLEFANATPLSTLS------LKH 381
Query: 193 VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
D +D L R+G+SC+ + + LD KL
Sbjct: 382 WDQDDDFEFTGSHLTVRNGYSCVPVALAEGLDIKL 416
>pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From
Plasmodium Falciparum In Complex With Phosphocholine
Length = 266
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
VLDIG+G G ++++ + G+D + +N+A + G + I F +D+L +
Sbjct: 58 KVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS--GNNKIIFEANDILTKE 115
Query: 227 L-ERQFQLVMDKGTLDAIGLHPDGPL 251
E F L+ + + A+ L L
Sbjct: 116 FPENNFDLIYSRDAILALSLENKNKL 141
>pdb|1NV8|A Chain A, N5-Glutamine Methyltransferase, Hemk
pdb|1NV8|B Chain B, N5-Glutamine Methyltransferase, Hemk
pdb|1NV9|A Chain A, Hemk, Apo Structure
Length = 284
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFS 213
+V DIGTG+G + ++K FSD + D S A+ +A+ A R G S
Sbjct: 126 TVADIGTGSGAIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHGVS 172
>pdb|1SG9|A Chain A, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|B Chain B, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
pdb|1SG9|C Chain C, Crystal Structure Of Thermotoga Maritima Protein Hemk, An
N5-Glutamine Methyltransferase
Length = 282
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFS 213
+V DIGTG+G + ++K FSD + D S A+ +A+ A R G S
Sbjct: 124 TVADIGTGSGAIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHGVS 170
>pdb|1VQ1|A Chain A, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
pdb|1VQ1|B Chain B, Crystal Structure Of N5-Glutamine Methyltransferase,
Hemk(Ec 2.1.1.-) (Tm0488) From Thermotoga Maritima At
2.80 A Resolution
Length = 294
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFS 213
+V DIGTG+G + ++K FSD + D S A+ +A+ A R G S
Sbjct: 136 TVADIGTGSGAIGVSVAK--FSDAIVFATDVSSKAVEIARKNAERHGVS 182
>pdb|1UFK|A Chain A, Crystal Structure Of Tt0836
pdb|2NXE|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXE|B Chain B, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With S-Adenosyl-L-Methionine
pdb|2NXJ|A Chain A, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXJ|B Chain B, T.Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Space Group P 21 21 2
pdb|2NXN|A Chain A, T. Thermophilus Ribosomal Protein L11 Methyltransferase
(Prma) In Complex With Ribosomal Protein L11
pdb|2NXC|A Chain A, Apo-Form Of T. Thermophilus Ribosomal Protein L11
Methyltransferase (Prma)
pdb|3CJQ|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|D Chain D, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJQ|G Chain G, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Dimethylated Ribosomal Protein L11 In Space Group
P212121
pdb|3CJR|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Ribosomal Protein L11 (k39a) And Inhibitor
Sinefungin.
pdb|3EGV|A Chain A, Ribosomal Protein L11 Methyltransferase (Prma) In Complex
With Trimethylated Ribosomal Protein L11
pdb|2ZBP|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Methionine
pdb|2ZBQ|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-Adenosyl-L-Homocysteine
pdb|2ZBR|A Chain A, Crystal Structure Of Ribosomal Protein L11
Methyltransferase From Thermus Thermophilus In Complex
With S-adenosyl-ornithine
Length = 254
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
VLD+GTG+G+L K G L GVD + A++ A R+G +FL
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGKAL-GVDIDPMVLPQAEANAKRNGVRP-RFL 172
>pdb|3CJT|A Chain A, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|C Chain C, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|E Chain E, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|G Chain G, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|I Chain I, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|K Chain K, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|M Chain M, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
pdb|3CJT|O Chain O, Ribosomal Protein L11 Methyltransferase (prma) In Complex
With Dimethylated Ribosomal Protein L11
Length = 254
Score = 28.9 bits (63), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL 218
VLD+GTG+G+L K G L GVD + A++ A R+G +FL
Sbjct: 123 KVLDLGTGSGVLAIAAEKLGGKAL-GVDIDPMVLPQAEANAKRNGVRP-RFL 172
>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
Thuringiensis
Length = 242
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK 216
VLD+G G+G +LS+ G+ + GVD SE I + S IK
Sbjct: 57 VLDVGCGDGYGTYKLSRTGYKAV-GVDISEVXIQKGKERGEGPDLSFIK 104
>pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
pdb|1VE3|B Chain B, Crystal Structure Of Ph0226 Protein From Pyrococcus
Horikoshii Ot3
Length = 227
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
VLD+ G G L GF ++ GVD SED I A+ A S ++F+V D
Sbjct: 41 KVLDLACGVGGFSFLLEDYGF-EVVGVDISEDXIRKAREYAKSRE-SNVEFIVGDARKLS 98
Query: 227 LE 228
E
Sbjct: 99 FE 100
>pdb|3DLC|A Chain A, Crystal Structure Of A Putative
S-Adenosyl-L-Methionine-Dependent Methyltransferase
(Mmp1179) From Methanococcus Maripaludis At 1.15 A
Resolution
Length = 219
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLA-QSLANRDGFSCIKFLVDD 221
+++ + +DIG+G G L L+KQ + +D+S+ +A +++A+ + I+ + D
Sbjct: 42 ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHXNEIALKNIADANLNDRIQIVQGD 101
Query: 222 VLDTKLERQFQ-LVMDKGTL 240
V + +E + L++ +G++
Sbjct: 102 VHNIPIEDNYADLIVSRGSV 121
>pdb|2FB2|A Chain A, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
pdb|2FB2|B Chain B, Structure Of The Moaa Arg17266268ALA TRIPLE MUTANT
Length = 340
Score = 27.7 bits (60), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 42/98 (42%), Gaps = 6/98 (6%)
Query: 139 ISQGHMLNHVED-LKSEPVEENDKYLSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVD 194
+++ ML +E + +PVE KY + NG+ L+ +S+ S T
Sbjct: 211 VTKDEMLTMIEQHFEIDPVEP--KYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTAAA 268
Query: 195 YSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ 232
S D A DGF+ F+ V D +L+ QF+
Sbjct: 269 LSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFK 306
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,347,890
Number of Sequences: 62578
Number of extensions: 285141
Number of successful extensions: 572
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 553
Number of HSP's gapped (non-prelim): 53
length of query: 253
length of database: 14,973,337
effective HSP length: 97
effective length of query: 156
effective length of database: 8,903,271
effective search space: 1388910276
effective search space used: 1388910276
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)