Query 025428
Match_columns 253
No_of_seqs 320 out of 2951
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 05:42:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025428.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025428hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1271 Methyltransferases [Ge 99.9 4.2E-27 9.1E-32 192.2 13.6 149 85-253 8-159 (227)
2 COG2226 UbiE Methylase involve 99.8 9.4E-19 2E-23 151.3 11.6 129 50-244 3-133 (238)
3 COG2264 PrmA Ribosomal protein 99.6 2.4E-15 5.2E-20 133.6 13.6 171 42-238 57-237 (300)
4 PF01209 Ubie_methyltran: ubiE 99.6 8E-16 1.7E-20 133.4 9.8 81 163-243 46-129 (233)
5 KOG1540 Ubiquinone biosynthesi 99.6 1.6E-15 3.4E-20 130.4 10.2 134 44-243 45-190 (296)
6 PF06325 PrmA: Ribosomal prote 99.6 3E-15 6.5E-20 133.7 9.6 140 95-241 94-236 (295)
7 PF13847 Methyltransf_31: Meth 99.6 1.1E-14 2.5E-19 117.6 10.9 81 164-244 3-87 (152)
8 PF12847 Methyltransf_18: Meth 99.6 2.1E-14 4.5E-19 109.5 10.9 80 164-243 1-84 (112)
9 PRK11207 tellurite resistance 99.6 1.8E-14 3.9E-19 121.7 10.5 90 152-243 19-108 (197)
10 COG2227 UbiG 2-polyprenyl-3-me 99.5 2.2E-14 4.8E-19 122.9 5.2 79 163-243 58-137 (243)
11 TIGR00477 tehB tellurite resis 99.5 2.1E-13 4.5E-18 115.1 10.3 88 153-243 20-107 (195)
12 PLN02233 ubiquinone biosynthes 99.5 4.9E-13 1.1E-17 117.8 12.8 81 163-243 72-158 (261)
13 TIGR03840 TMPT_Se_Te thiopurin 99.5 1.8E-13 4E-18 117.1 9.4 80 163-243 33-126 (213)
14 PF03848 TehB: Tellurite resis 99.5 3.9E-13 8.4E-18 112.9 10.9 89 152-243 19-107 (192)
15 PRK05785 hypothetical protein; 99.5 3.2E-13 7E-18 116.6 10.1 72 164-243 51-123 (226)
16 PF13649 Methyltransf_25: Meth 99.4 2.5E-13 5.4E-18 102.3 7.1 75 168-243 1-81 (101)
17 PRK12335 tellurite resistance 99.4 5.6E-13 1.2E-17 118.9 10.5 89 152-243 109-197 (287)
18 PF05175 MTS: Methyltransferas 99.4 1E-12 2.2E-17 108.6 11.2 92 150-242 18-110 (170)
19 TIGR03587 Pse_Me-ase pseudamin 99.4 4.7E-13 1E-17 113.8 9.5 77 161-243 40-118 (204)
20 PF08241 Methyltransf_11: Meth 99.4 4.1E-13 8.8E-18 98.4 7.9 72 169-243 1-73 (95)
21 TIGR02752 MenG_heptapren 2-hep 99.4 1.2E-12 2.7E-17 112.5 11.8 81 163-243 44-127 (231)
22 PRK11036 putative S-adenosyl-L 99.4 4.7E-13 1E-17 117.3 8.8 79 164-243 44-125 (255)
23 PLN02396 hexaprenyldihydroxybe 99.4 4.6E-13 9.9E-18 121.2 8.4 81 163-244 130-212 (322)
24 TIGR00406 prmA ribosomal prote 99.4 2.1E-12 4.6E-17 115.3 12.3 135 95-241 92-236 (288)
25 TIGR02021 BchM-ChlM magnesium 99.4 1.8E-12 3.9E-17 110.9 10.2 87 154-243 44-132 (219)
26 TIGR00138 gidB 16S rRNA methyl 99.4 1.2E-12 2.6E-17 109.3 8.8 75 164-238 42-117 (181)
27 PLN02244 tocopherol O-methyltr 99.4 1.8E-12 3.8E-17 118.4 10.6 81 163-243 117-199 (340)
28 PRK00107 gidB 16S rRNA methylt 99.4 2.7E-12 5.8E-17 107.8 10.5 76 163-238 44-120 (187)
29 PRK00517 prmA ribosomal protei 99.4 1.8E-12 3.9E-17 113.4 9.1 133 95-240 53-189 (250)
30 PRK15451 tRNA cmo(5)U34 methyl 99.4 3.6E-12 7.9E-17 111.3 9.9 80 163-243 55-138 (247)
31 PRK13255 thiopurine S-methyltr 99.4 3.5E-12 7.7E-17 109.5 9.4 80 163-243 36-129 (218)
32 COG2230 Cfa Cyclopropane fatty 99.4 3.6E-12 7.7E-17 112.6 9.6 81 162-245 70-152 (283)
33 PRK14103 trans-aconitate 2-met 99.4 2.4E-12 5.2E-17 112.8 8.4 75 163-244 28-103 (255)
34 PRK15068 tRNA mo(5)U34 methylt 99.4 4.6E-12 1E-16 114.9 10.6 81 163-243 121-202 (322)
35 PLN02585 magnesium protoporphy 99.3 5.2E-12 1.1E-16 114.1 10.6 77 164-243 144-225 (315)
36 PRK07580 Mg-protoporphyrin IX 99.3 2.3E-12 5E-17 110.5 7.9 78 163-243 62-140 (230)
37 PRK01683 trans-aconitate 2-met 99.3 9.9E-12 2.2E-16 108.8 9.6 76 163-243 30-106 (258)
38 TIGR00080 pimt protein-L-isoas 99.3 2E-11 4.3E-16 104.4 11.2 82 162-243 75-159 (215)
39 COG4106 Tam Trans-aconitate me 99.3 2.4E-12 5.2E-17 108.6 5.2 89 154-248 21-110 (257)
40 PF05724 TPMT: Thiopurine S-me 99.3 5.4E-12 1.2E-16 108.4 7.2 98 150-250 21-134 (218)
41 PRK11873 arsM arsenite S-adeno 99.3 1.7E-11 3.7E-16 108.2 10.3 82 162-243 75-159 (272)
42 TIGR00537 hemK_rel_arch HemK-r 99.3 2.6E-11 5.6E-16 100.7 10.7 78 163-243 18-95 (179)
43 PRK13942 protein-L-isoaspartat 99.3 3.3E-11 7.1E-16 103.0 11.6 82 162-243 74-158 (212)
44 PRK06202 hypothetical protein; 99.3 1.7E-11 3.7E-16 105.8 9.6 78 163-243 59-142 (232)
45 PRK10258 biotin biosynthesis p 99.3 1.4E-11 3.1E-16 107.4 9.1 74 164-243 42-116 (251)
46 PTZ00098 phosphoethanolamine N 99.3 1.9E-11 4.1E-16 107.8 9.9 79 163-243 51-130 (263)
47 COG2263 Predicted RNA methylas 99.3 3.4E-11 7.3E-16 99.9 10.7 84 162-248 43-126 (198)
48 TIGR00740 methyltransferase, p 99.3 2.2E-11 4.7E-16 105.6 9.7 80 163-243 52-135 (239)
49 PRK13944 protein-L-isoaspartat 99.3 4.3E-11 9.3E-16 101.7 11.4 81 163-243 71-155 (205)
50 PRK08287 cobalt-precorrin-6Y C 99.3 3.3E-11 7.2E-16 100.7 10.5 78 163-241 30-108 (187)
51 PLN02336 phosphoethanolamine N 99.3 2.4E-11 5.1E-16 115.5 10.6 89 153-243 256-345 (475)
52 PF02353 CMAS: Mycolic acid cy 99.3 2.1E-11 4.5E-16 108.2 9.5 79 163-244 61-141 (273)
53 TIGR00452 methyltransferase, p 99.3 2.1E-11 4.5E-16 110.0 9.4 81 163-243 120-201 (314)
54 KOG1270 Methyltransferases [Co 99.3 4.3E-12 9.2E-17 109.9 4.7 77 164-243 89-171 (282)
55 PF05401 NodS: Nodulation prot 99.3 1.8E-11 3.9E-16 102.5 8.0 78 163-243 42-119 (201)
56 smart00828 PKS_MT Methyltransf 99.2 2.5E-11 5.3E-16 103.9 8.7 78 166-243 1-80 (224)
57 PRK15001 SAM-dependent 23S rib 99.2 4E-11 8.6E-16 110.7 10.6 93 150-243 215-311 (378)
58 TIGR02469 CbiT precorrin-6Y C5 99.2 6.4E-11 1.4E-15 91.2 10.2 79 163-241 18-99 (124)
59 COG4123 Predicted O-methyltran 99.2 2.5E-11 5.5E-16 105.4 8.4 93 153-245 33-130 (248)
60 PRK13256 thiopurine S-methyltr 99.2 2.9E-11 6.2E-16 104.2 8.7 83 164-249 43-141 (226)
61 TIGR03533 L3_gln_methyl protei 99.2 6.9E-11 1.5E-15 105.4 11.2 76 164-239 121-198 (284)
62 COG2890 HemK Methylase of poly 99.2 4.8E-11 1E-15 106.2 10.0 73 167-240 113-186 (280)
63 PRK14967 putative methyltransf 99.2 5.5E-11 1.2E-15 102.2 9.9 78 163-241 35-112 (223)
64 PRK00121 trmB tRNA (guanine-N( 99.2 3.8E-11 8.3E-16 101.8 8.8 77 164-240 40-121 (202)
65 PRK03522 rumB 23S rRNA methylu 99.2 3.5E-11 7.5E-16 108.8 8.9 100 137-237 143-247 (315)
66 PRK00312 pcm protein-L-isoaspa 99.2 1E-10 2.2E-15 99.6 11.1 81 162-243 76-157 (212)
67 PRK14966 unknown domain/N5-glu 99.2 9.2E-11 2E-15 108.9 11.4 101 136-240 224-329 (423)
68 PRK10909 rsmD 16S rRNA m(2)G96 99.2 5.6E-11 1.2E-15 100.7 9.0 88 153-240 42-131 (199)
69 PF13659 Methyltransf_26: Meth 99.2 3.5E-11 7.5E-16 92.3 7.1 79 165-243 1-83 (117)
70 TIGR02081 metW methionine bios 99.2 6.8E-11 1.5E-15 99.4 9.1 74 163-243 12-88 (194)
71 PF08242 Methyltransf_12: Meth 99.2 1.8E-12 4E-17 96.9 -0.6 75 169-243 1-79 (99)
72 COG2813 RsmC 16S RNA G1207 met 99.2 1E-10 2.2E-15 103.8 10.0 92 149-242 144-236 (300)
73 TIGR00536 hemK_fam HemK family 99.2 2E-10 4.4E-15 102.3 11.4 74 166-239 116-191 (284)
74 TIGR02072 BioC biotin biosynth 99.2 8.5E-11 1.8E-15 100.6 8.6 76 164-243 34-111 (240)
75 PRK09489 rsmC 16S ribosomal RN 99.2 2.8E-10 6.1E-15 104.0 12.1 102 138-242 170-273 (342)
76 PRK11805 N5-glutamine S-adenos 99.2 1.8E-10 3.9E-15 103.8 10.4 73 166-238 135-209 (307)
77 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.2E-10 2.5E-15 110.1 9.4 102 136-238 266-375 (443)
78 smart00650 rADc Ribosomal RNA 99.2 2.3E-10 5E-15 94.2 10.0 76 163-241 12-88 (169)
79 PRK06922 hypothetical protein; 99.2 1.4E-10 3.1E-15 112.4 9.8 82 161-243 415-500 (677)
80 PF13489 Methyltransf_23: Meth 99.2 1.4E-10 3.1E-15 93.2 8.3 72 162-244 20-92 (161)
81 PLN02490 MPBQ/MSBQ methyltrans 99.1 1.4E-10 3.1E-15 105.6 9.2 78 163-243 112-191 (340)
82 TIGR01177 conserved hypothetic 99.1 2.9E-10 6.2E-15 103.4 10.8 79 161-240 179-258 (329)
83 PF07021 MetW: Methionine bios 99.1 1.1E-10 2.4E-15 97.4 7.3 74 163-243 12-88 (193)
84 TIGR03534 RF_mod_PrmC protein- 99.1 3E-10 6.4E-15 98.5 10.2 78 164-241 87-165 (251)
85 TIGR00091 tRNA (guanine-N(7)-) 99.1 1.8E-10 4E-15 97.0 7.9 76 164-239 16-96 (194)
86 PF01135 PCMT: Protein-L-isoas 99.1 3.4E-10 7.4E-15 96.6 9.4 91 152-243 61-154 (209)
87 PRK00216 ubiE ubiquinone/menaq 99.1 4.8E-10 1E-14 96.1 10.3 80 164-243 51-134 (239)
88 PRK14968 putative methyltransf 99.1 6.2E-10 1.4E-14 92.2 10.6 78 163-241 22-101 (188)
89 PRK01544 bifunctional N5-gluta 99.1 4.3E-10 9.2E-15 107.8 10.8 76 165-240 139-216 (506)
90 TIGR02085 meth_trns_rumB 23S r 99.1 2.4E-10 5.2E-15 105.7 8.8 104 135-239 201-309 (374)
91 COG2242 CobL Precorrin-6B meth 99.1 6.9E-10 1.5E-14 92.2 10.5 79 161-239 31-111 (187)
92 PRK08317 hypothetical protein; 99.1 8.4E-10 1.8E-14 94.2 10.8 80 163-243 18-100 (241)
93 TIGR00095 RNA methyltransferas 99.1 4.6E-10 1E-14 94.4 8.9 97 144-240 29-131 (189)
94 COG2518 Pcm Protein-L-isoaspar 99.1 9E-10 2E-14 93.2 10.6 80 163-243 71-151 (209)
95 PHA03411 putative methyltransf 99.1 6.3E-10 1.4E-14 98.1 9.6 75 164-243 64-139 (279)
96 KOG1541 Predicted protein carb 99.1 5E-10 1.1E-14 94.9 8.4 78 164-248 50-129 (270)
97 PRK11705 cyclopropane fatty ac 99.1 6.9E-10 1.5E-14 102.9 10.0 76 163-244 166-242 (383)
98 PRK13943 protein-L-isoaspartat 99.1 9.3E-10 2E-14 99.7 10.6 81 163-243 79-162 (322)
99 PRK07402 precorrin-6B methylas 99.1 1.1E-09 2.3E-14 92.3 10.0 86 150-236 27-115 (196)
100 PRK14904 16S rRNA methyltransf 99.1 1.1E-09 2.4E-14 103.5 11.1 87 152-238 238-326 (445)
101 PRK15128 23S rRNA m(5)C1962 me 99.1 5.8E-10 1.3E-14 103.8 9.0 82 158-239 214-302 (396)
102 PF08003 Methyltransf_9: Prote 99.1 5.1E-10 1.1E-14 99.4 8.1 81 163-243 114-195 (315)
103 TIGR01983 UbiG ubiquinone bios 99.1 6.9E-10 1.5E-14 94.8 8.7 79 164-243 45-125 (224)
104 PRK00377 cbiT cobalt-precorrin 99.0 1.3E-09 2.9E-14 92.0 10.1 77 162-238 38-119 (198)
105 PLN02336 phosphoethanolamine N 99.0 8.8E-10 1.9E-14 104.8 9.6 77 164-243 37-116 (475)
106 PRK09328 N5-glutamine S-adenos 99.0 1.9E-09 4E-14 95.0 11.0 78 163-240 107-185 (275)
107 PRK05134 bifunctional 3-demeth 99.0 1.3E-09 2.7E-14 93.9 9.6 79 163-243 47-127 (233)
108 PRK11783 rlmL 23S rRNA m(2)G24 99.0 5.8E-10 1.3E-14 110.8 8.2 83 157-239 531-617 (702)
109 PHA03412 putative methyltransf 99.0 1.2E-09 2.7E-14 94.3 9.1 76 164-244 49-128 (241)
110 TIGR03704 PrmC_rel_meth putati 99.0 2.3E-09 4.9E-14 94.0 11.0 74 165-241 87-164 (251)
111 PRK14902 16S rRNA methyltransf 99.0 1.7E-09 3.8E-14 102.1 10.8 87 153-239 239-329 (444)
112 PRK14901 16S rRNA methyltransf 99.0 1.4E-09 3E-14 102.5 10.0 99 153-251 241-349 (434)
113 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.6E-09 3.4E-14 95.7 9.5 89 151-239 58-149 (264)
114 PRK14121 tRNA (guanine-N(7)-)- 99.0 1.9E-09 4.1E-14 99.5 10.3 77 163-239 121-201 (390)
115 PRK14896 ksgA 16S ribosomal RN 99.0 1.7E-09 3.7E-14 95.2 9.6 75 163-241 28-102 (258)
116 TIGR00479 rumA 23S rRNA (uraci 99.0 1.1E-09 2.4E-14 103.1 8.8 102 136-238 261-370 (431)
117 TIGR01934 MenG_MenH_UbiE ubiqu 99.0 2.3E-09 5.1E-14 90.9 10.0 78 164-243 39-119 (223)
118 smart00138 MeTrc Methyltransfe 99.0 8.8E-10 1.9E-14 97.3 7.4 80 164-243 99-216 (264)
119 PRK11088 rrmA 23S rRNA methylt 99.0 1.7E-09 3.8E-14 95.6 9.3 70 164-238 85-159 (272)
120 PRK05031 tRNA (uracil-5-)-meth 99.0 1.1E-09 2.5E-14 100.8 8.0 89 136-225 176-266 (362)
121 PRK14903 16S rRNA methyltransf 99.0 2.5E-09 5.4E-14 100.7 10.4 89 152-240 225-317 (431)
122 KOG1499 Protein arginine N-met 99.0 1.3E-09 2.9E-14 98.1 7.8 75 163-238 59-135 (346)
123 KOG3420 Predicted RNA methylas 99.0 7.1E-10 1.5E-14 88.3 5.3 79 163-242 47-126 (185)
124 PRK04266 fibrillarin; Provisio 99.0 4.1E-09 8.8E-14 91.1 10.5 76 161-238 69-149 (226)
125 TIGR02143 trmA_only tRNA (urac 99.0 1.6E-09 3.5E-14 99.5 8.0 89 136-225 167-257 (353)
126 cd02440 AdoMet_MTases S-adenos 99.0 3.6E-09 7.8E-14 77.0 8.4 76 167-242 1-78 (107)
127 PRK00274 ksgA 16S ribosomal RN 99.0 2.1E-09 4.6E-14 95.2 8.5 74 163-240 41-115 (272)
128 PRK10901 16S rRNA methyltransf 99.0 5.2E-09 1.1E-13 98.4 11.5 87 153-240 233-323 (427)
129 PLN02781 Probable caffeoyl-CoA 99.0 2.4E-09 5.1E-14 93.0 8.5 87 152-238 56-152 (234)
130 PRK11727 23S rRNA mA1618 methy 99.0 5E-09 1.1E-13 94.8 10.7 80 164-243 114-202 (321)
131 PLN03075 nicotianamine synthas 98.9 5.1E-09 1.1E-13 93.5 10.2 79 164-243 123-207 (296)
132 TIGR02716 C20_methyl_CrtF C-20 98.9 5.5E-09 1.2E-13 93.9 10.5 79 163-243 148-228 (306)
133 PTZ00338 dimethyladenosine tra 98.9 5.6E-09 1.2E-13 93.6 9.7 77 163-241 35-112 (294)
134 PF03602 Cons_hypoth95: Conser 98.9 2.1E-09 4.5E-14 90.0 6.5 98 144-241 21-125 (183)
135 PF01170 UPF0020: Putative RNA 98.9 1.8E-08 3.9E-13 84.0 10.0 82 159-240 23-116 (179)
136 PF05958 tRNA_U5-meth_tr: tRNA 98.9 8.4E-09 1.8E-13 94.7 8.4 91 134-225 164-256 (352)
137 PLN02672 methionine S-methyltr 98.8 8.7E-09 1.9E-13 105.5 8.9 75 165-239 119-212 (1082)
138 TIGR00563 rsmB ribosomal RNA s 98.8 2.1E-08 4.6E-13 94.3 10.9 87 152-238 226-317 (426)
139 TIGR00755 ksgA dimethyladenosi 98.8 1.5E-08 3.2E-13 88.9 9.0 75 163-241 28-105 (253)
140 TIGR03438 probable methyltrans 98.8 1.8E-08 3.8E-13 90.6 9.6 81 163-243 62-151 (301)
141 COG2265 TrmA SAM-dependent met 98.8 1E-08 2.3E-13 96.2 8.2 103 134-237 260-369 (432)
142 PRK11188 rrmJ 23S rRNA methylt 98.8 1.4E-08 3E-13 86.7 8.3 70 163-243 50-130 (209)
143 PRK04457 spermidine synthase; 98.8 1.4E-08 3E-13 89.7 7.7 75 163-237 65-143 (262)
144 COG0742 N6-adenine-specific me 98.8 5.6E-08 1.2E-12 81.1 10.5 98 144-241 22-125 (187)
145 PRK04148 hypothetical protein; 98.8 4.8E-08 1E-12 77.5 9.2 66 164-237 16-84 (134)
146 KOG2904 Predicted methyltransf 98.8 3.8E-08 8.3E-13 86.0 9.0 103 138-240 118-232 (328)
147 TIGR00438 rrmJ cell division p 98.8 3E-08 6.4E-13 82.9 8.1 70 160-240 28-108 (188)
148 PF09445 Methyltransf_15: RNA 98.8 1.7E-08 3.6E-13 82.8 6.2 73 167-240 2-79 (163)
149 COG1092 Predicted SAM-dependen 98.8 2.4E-08 5.2E-13 92.4 8.0 87 152-238 205-298 (393)
150 KOG1500 Protein arginine N-met 98.7 3.7E-08 8.1E-13 88.3 7.8 74 163-237 176-250 (517)
151 KOG4300 Predicted methyltransf 98.7 2.9E-08 6.3E-13 83.5 6.7 79 165-243 77-158 (252)
152 COG1041 Predicted DNA modifica 98.7 4.9E-08 1.1E-12 88.4 8.5 80 159-239 192-273 (347)
153 KOG2187 tRNA uracil-5-methyltr 98.7 1.4E-08 3.1E-13 95.3 4.9 93 132-225 348-443 (534)
154 PLN02476 O-methyltransferase 98.7 6.1E-08 1.3E-12 86.0 8.6 89 150-238 104-202 (278)
155 PF01596 Methyltransf_3: O-met 98.7 3.7E-08 8E-13 83.9 6.7 89 150-238 31-129 (205)
156 PRK00811 spermidine synthase; 98.7 5.3E-08 1.1E-12 86.9 7.9 76 164-239 76-159 (283)
157 PRK04338 N(2),N(2)-dimethylgua 98.7 4.6E-08 1E-12 90.7 7.7 74 165-238 58-133 (382)
158 KOG3010 Methyltransferase [Gen 98.7 1.6E-08 3.5E-13 86.8 4.1 78 167-245 36-115 (261)
159 PF10672 Methyltrans_SAM: S-ad 98.7 3.8E-08 8.2E-13 87.7 6.6 86 153-238 112-203 (286)
160 TIGR00478 tly hemolysin TlyA f 98.7 5E-08 1.1E-12 84.3 7.0 40 163-202 74-113 (228)
161 PF02475 Met_10: Met-10+ like- 98.7 9.9E-08 2.2E-12 80.9 8.3 78 162-239 99-178 (200)
162 COG4976 Predicted methyltransf 98.6 2.6E-09 5.7E-14 91.1 -1.9 84 155-244 114-202 (287)
163 COG4122 Predicted O-methyltran 98.6 1.1E-07 2.5E-12 81.4 8.1 88 150-237 45-139 (219)
164 COG2519 GCD14 tRNA(1-methylade 98.6 2.8E-07 6E-12 80.0 9.8 80 159-238 89-171 (256)
165 PF05185 PRMT5: PRMT5 arginine 98.6 1.8E-07 3.9E-12 88.4 9.2 72 165-236 187-264 (448)
166 PTZ00146 fibrillarin; Provisio 98.6 2.5E-07 5.3E-12 82.5 9.3 74 163-238 131-210 (293)
167 PF02390 Methyltransf_4: Putat 98.6 2.9E-07 6.4E-12 77.8 9.2 71 166-236 19-94 (195)
168 PRK00050 16S rRNA m(4)C1402 me 98.6 2.9E-07 6.3E-12 82.4 8.7 84 155-241 11-101 (296)
169 PF10294 Methyltransf_16: Puta 98.5 3.3E-07 7.2E-12 75.9 7.9 79 163-242 44-131 (173)
170 COG2520 Predicted methyltransf 98.5 3.5E-07 7.5E-12 83.2 8.4 77 163-239 187-265 (341)
171 PF03291 Pox_MCEL: mRNA cappin 98.5 3E-07 6.6E-12 83.7 8.0 82 164-245 62-160 (331)
172 PF08704 GCD14: tRNA methyltra 98.5 1.1E-06 2.3E-11 76.9 10.5 80 159-238 35-121 (247)
173 COG0030 KsgA Dimethyladenosine 98.5 7.2E-07 1.6E-11 78.2 9.3 75 163-240 29-105 (259)
174 PLN02589 caffeoyl-CoA O-methyl 98.5 3.5E-07 7.5E-12 80.1 7.2 89 150-238 65-164 (247)
175 PLN02366 spermidine synthase 98.4 7.8E-07 1.7E-11 80.3 8.5 77 163-239 90-174 (308)
176 KOG3191 Predicted N6-DNA-methy 98.4 9.4E-07 2E-11 73.1 8.0 76 165-241 44-121 (209)
177 KOG2361 Predicted methyltransf 98.4 2.4E-07 5.2E-12 79.7 4.6 117 92-243 33-157 (264)
178 PRK03612 spermidine synthase; 98.4 3.6E-07 7.7E-12 88.1 6.2 77 163-239 296-382 (521)
179 TIGR00417 speE spermidine synt 98.4 7.7E-07 1.7E-11 78.8 7.7 76 164-239 72-154 (270)
180 COG0220 Predicted S-adenosylme 98.4 5.4E-07 1.2E-11 77.9 6.4 71 166-236 50-125 (227)
181 TIGR00308 TRM1 tRNA(guanine-26 98.4 6.1E-07 1.3E-11 83.0 6.8 73 166-238 46-122 (374)
182 KOG0820 Ribosomal RNA adenine 98.4 1.5E-06 3.2E-11 76.1 8.7 75 163-239 57-132 (315)
183 PRK01581 speE spermidine synth 98.4 6.9E-07 1.5E-11 81.9 6.8 76 163-238 149-234 (374)
184 COG0116 Predicted N6-adenine-s 98.4 2.3E-06 5.1E-11 78.5 9.5 78 163-240 190-309 (381)
185 COG4076 Predicted RNA methylas 98.3 7E-07 1.5E-11 74.3 5.0 71 165-237 33-103 (252)
186 PF00891 Methyltransf_2: O-met 98.3 2.8E-06 6.1E-11 73.6 8.9 72 163-243 99-171 (241)
187 PRK11783 rlmL 23S rRNA m(2)G24 98.3 5.6E-06 1.2E-10 82.6 11.0 90 152-241 178-314 (702)
188 TIGR01444 fkbM_fam methyltrans 98.3 3.8E-06 8.3E-11 66.5 7.5 59 167-225 1-60 (143)
189 PRK11933 yebU rRNA (cytosine-C 98.2 6.1E-06 1.3E-10 78.5 9.7 91 150-240 97-193 (470)
190 KOG1975 mRNA cap methyltransfe 98.2 2.5E-06 5.5E-11 76.3 6.5 82 163-244 116-210 (389)
191 PF13679 Methyltransf_32: Meth 98.2 6.3E-06 1.4E-10 65.9 7.8 74 163-236 24-105 (141)
192 KOG2730 Methylase [General fun 98.2 1.9E-06 4.1E-11 73.3 4.4 74 164-238 94-173 (263)
193 PF02384 N6_Mtase: N-6 DNA Met 98.2 5.1E-06 1.1E-10 74.7 7.2 93 150-243 33-138 (311)
194 KOG2899 Predicted methyltransf 98.2 9.8E-06 2.1E-10 70.0 8.3 46 163-208 57-103 (288)
195 PF02527 GidB: rRNA small subu 98.1 1.6E-05 3.4E-10 66.7 8.9 74 167-240 51-125 (184)
196 COG3897 Predicted methyltransf 98.1 3.8E-06 8.2E-11 70.3 5.0 75 163-240 78-152 (218)
197 PLN02232 ubiquinone biosynthes 98.1 5.7E-06 1.2E-10 67.5 5.2 53 191-243 1-57 (160)
198 KOG2940 Predicted methyltransf 98.1 3.4E-06 7.3E-11 72.4 3.8 83 163-247 71-154 (325)
199 PF05971 Methyltransf_10: Prot 98.0 2.6E-05 5.6E-10 69.9 9.3 78 165-243 103-190 (299)
200 PF00398 RrnaAD: Ribosomal RNA 98.0 2.1E-05 4.5E-10 69.3 8.4 84 153-240 20-107 (262)
201 PLN02823 spermine synthase 98.0 1.4E-05 3E-10 73.0 7.3 74 164-237 103-183 (336)
202 KOG2352 Predicted spermine/spe 98.0 1.6E-05 3.4E-10 74.8 7.5 84 167-251 51-135 (482)
203 PF05891 Methyltransf_PK: AdoM 98.0 1.3E-05 2.9E-10 68.3 6.5 81 164-244 55-136 (218)
204 COG0144 Sun tRNA and rRNA cyto 98.0 6.7E-05 1.5E-09 69.1 11.1 104 149-252 141-254 (355)
205 PRK10742 putative methyltransf 98.0 3.6E-05 7.7E-10 67.1 8.5 79 163-242 85-176 (250)
206 KOG1661 Protein-L-isoaspartate 98.0 2.3E-05 4.9E-10 66.4 7.0 89 150-238 67-170 (237)
207 COG0357 GidB Predicted S-adeno 98.0 2.4E-05 5.1E-10 67.0 7.2 75 165-239 68-144 (215)
208 PF12147 Methyltransf_20: Puta 97.9 7E-05 1.5E-09 66.5 9.9 80 164-243 135-222 (311)
209 TIGR02987 met_A_Alw26 type II 97.9 2.5E-05 5.3E-10 75.5 7.4 80 164-243 31-125 (524)
210 PF06080 DUF938: Protein of un 97.9 4E-05 8.7E-10 65.0 6.8 77 167-243 28-115 (204)
211 PF04816 DUF633: Family of unk 97.9 5.4E-05 1.2E-09 64.5 7.6 71 168-238 1-74 (205)
212 PF08123 DOT1: Histone methyla 97.9 3E-05 6.5E-10 66.1 5.9 78 163-240 41-132 (205)
213 PF05219 DREV: DREV methyltran 97.9 2.9E-05 6.4E-10 67.9 5.9 70 164-243 94-164 (265)
214 PRK01544 bifunctional N5-gluta 97.8 3.8E-05 8.3E-10 73.9 6.7 73 164-236 347-423 (506)
215 PRK11760 putative 23S rRNA C24 97.8 6.9E-05 1.5E-09 68.2 7.4 69 163-239 210-279 (357)
216 COG0421 SpeE Spermidine syntha 97.8 7.9E-05 1.7E-09 66.4 7.4 74 166-239 78-158 (282)
217 COG3963 Phospholipid N-methylt 97.7 0.00014 3.1E-09 59.6 7.1 76 163-243 47-130 (194)
218 PF09243 Rsm22: Mitochondrial 97.6 0.0001 2.2E-09 65.6 6.2 81 163-243 32-115 (274)
219 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.6 0.00015 3.2E-09 64.8 6.7 92 150-241 71-167 (283)
220 PF01564 Spermine_synth: Sperm 97.6 0.00012 2.6E-09 64.1 5.7 76 163-238 75-158 (246)
221 PF01739 CheR: CheR methyltran 97.6 0.00035 7.6E-09 59.1 8.3 80 164-243 31-149 (196)
222 KOG1663 O-methyltransferase [S 97.6 0.00033 7.2E-09 60.1 8.1 86 152-237 61-156 (237)
223 PF07091 FmrO: Ribosomal RNA m 97.6 0.00039 8.5E-09 60.6 8.5 86 156-242 97-183 (251)
224 COG2521 Predicted archaeal met 97.6 3E-05 6.4E-10 66.8 1.5 74 163-236 133-211 (287)
225 COG0500 SmtA SAM-dependent met 97.6 0.00045 9.8E-09 52.2 8.0 74 168-242 52-131 (257)
226 KOG2915 tRNA(1-methyladenosine 97.5 0.001 2.2E-08 58.6 10.3 83 156-238 97-185 (314)
227 TIGR00006 S-adenosyl-methyltra 97.4 0.00088 1.9E-08 60.3 9.1 78 163-241 19-103 (305)
228 PF01728 FtsJ: FtsJ-like methy 97.4 8.3E-05 1.8E-09 61.5 2.2 68 164-242 23-103 (181)
229 PRK10611 chemotaxis methyltran 97.3 0.00047 1E-08 61.7 6.5 79 165-243 116-236 (287)
230 KOG1501 Arginine N-methyltrans 97.3 0.00039 8.5E-09 64.8 5.4 61 166-226 68-129 (636)
231 PHA01634 hypothetical protein 97.3 0.0017 3.6E-08 51.1 7.7 49 164-212 28-76 (156)
232 KOG2671 Putative RNA methylase 97.2 0.00041 8.8E-09 62.9 4.7 84 154-238 198-292 (421)
233 PRK00536 speE spermidine synth 97.2 0.0018 3.8E-08 57.2 8.3 73 163-238 71-147 (262)
234 KOG1331 Predicted methyltransf 97.2 0.00013 2.7E-09 64.5 0.9 81 154-244 35-117 (293)
235 COG1189 Predicted rRNA methyla 97.2 0.0011 2.3E-08 57.4 6.4 73 163-240 78-154 (245)
236 PF05148 Methyltransf_8: Hypot 97.1 0.0013 2.8E-08 56.0 6.1 71 153-240 61-132 (219)
237 COG3129 Predicted SAM-dependen 97.0 0.0013 2.8E-08 56.7 5.5 79 164-243 78-166 (292)
238 COG2384 Predicted SAM-dependen 97.0 0.0032 7E-08 53.8 7.8 76 163-238 15-93 (226)
239 COG0293 FtsJ 23S rRNA methylas 97.0 0.0035 7.6E-08 53.2 7.9 67 163-240 44-121 (205)
240 TIGR03439 methyl_EasF probable 97.0 0.0032 7E-08 57.2 8.0 81 163-243 75-170 (319)
241 COG1352 CheR Methylase of chem 97.0 0.0034 7.5E-08 55.6 7.9 79 165-243 97-215 (268)
242 KOG1269 SAM-dependent methyltr 96.9 0.0014 2.9E-08 60.6 4.9 84 161-244 107-192 (364)
243 COG4262 Predicted spermidine s 96.7 0.0033 7.2E-08 57.6 6.0 74 163-236 288-371 (508)
244 KOG4058 Uncharacterized conser 96.7 0.0036 7.9E-08 50.5 5.4 66 163-228 71-137 (199)
245 COG0286 HsdM Type I restrictio 96.7 0.0047 1E-07 59.3 7.2 91 150-241 173-275 (489)
246 PF04445 SAM_MT: Putative SAM- 96.7 0.012 2.5E-07 51.2 8.8 76 166-242 77-163 (234)
247 KOG1122 tRNA and rRNA cytosine 96.6 0.008 1.7E-07 55.9 7.5 90 153-242 230-324 (460)
248 PRK11524 putative methyltransf 96.5 0.0073 1.6E-07 53.8 7.0 46 163-209 207-252 (284)
249 cd00315 Cyt_C5_DNA_methylase C 96.5 0.0074 1.6E-07 53.6 6.8 71 167-243 2-75 (275)
250 KOG1227 Putative methyltransfe 96.5 0.0016 3.5E-08 58.1 2.4 73 164-236 194-268 (351)
251 PF03059 NAS: Nicotianamine sy 96.4 0.0088 1.9E-07 53.2 6.5 74 165-238 121-200 (276)
252 PF01861 DUF43: Protein of unk 96.4 0.025 5.4E-07 49.2 9.1 75 163-238 43-120 (243)
253 PF01555 N6_N4_Mtase: DNA meth 96.3 0.0081 1.8E-07 50.5 5.8 42 163-205 190-231 (231)
254 COG0275 Predicted S-adenosylme 96.3 0.032 6.9E-07 50.0 9.2 75 163-238 22-104 (314)
255 PF11599 AviRa: RRNA methyltra 96.3 0.0089 1.9E-07 51.1 5.4 45 164-208 51-98 (246)
256 PRK13699 putative methylase; P 96.2 0.018 3.9E-07 49.8 7.4 47 163-210 162-208 (227)
257 PF02005 TRM: N2,N2-dimethylgu 96.2 0.0085 1.9E-07 55.7 5.6 73 164-236 49-127 (377)
258 KOG3178 Hydroxyindole-O-methyl 96.2 0.014 3E-07 53.2 6.6 72 165-243 178-249 (342)
259 KOG3987 Uncharacterized conser 96.2 0.00046 1E-08 58.5 -2.7 42 164-206 112-153 (288)
260 PF07757 AdoMet_MTase: Predict 96.1 0.0058 1.2E-07 46.6 3.4 33 164-197 58-90 (112)
261 KOG3045 Predicted RNA methylas 96.1 0.011 2.3E-07 52.0 5.3 68 153-239 169-237 (325)
262 PF01795 Methyltransf_5: MraW 96.0 0.015 3.2E-07 52.6 6.1 82 155-238 12-101 (310)
263 PF07942 N2227: N2227-like pro 96.0 0.038 8.2E-07 49.1 8.2 41 164-205 56-96 (270)
264 PF02636 Methyltransf_28: Puta 95.9 0.019 4.1E-07 50.2 6.2 78 165-246 19-111 (252)
265 PF03141 Methyltransf_29: Puta 95.9 0.0053 1.2E-07 58.3 2.9 71 166-242 119-193 (506)
266 KOG3115 Methyltransferase-like 95.8 0.013 2.8E-07 49.7 4.5 62 164-225 60-129 (249)
267 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.022 4.8E-07 52.3 6.2 70 165-234 53-125 (380)
268 PF11968 DUF3321: Putative met 95.4 0.028 6.1E-07 48.1 5.1 62 166-244 53-118 (219)
269 PF13578 Methyltransf_24: Meth 95.1 0.0071 1.5E-07 45.3 0.4 69 169-238 1-77 (106)
270 PF04672 Methyltransf_19: S-ad 94.9 0.11 2.3E-06 46.0 7.4 80 164-243 68-163 (267)
271 PF00145 DNA_methylase: C-5 cy 94.9 0.052 1.1E-06 48.3 5.5 69 167-242 2-73 (335)
272 PF01269 Fibrillarin: Fibrilla 94.6 0.35 7.7E-06 41.7 9.6 73 163-237 72-150 (229)
273 KOG2078 tRNA modification enzy 94.4 0.032 6.9E-07 52.2 2.9 62 163-225 248-311 (495)
274 COG1565 Uncharacterized conser 93.9 0.15 3.4E-06 46.8 6.3 79 164-246 77-165 (370)
275 TIGR00675 dcm DNA-methyltransf 93.7 0.12 2.7E-06 46.7 5.4 70 168-243 1-72 (315)
276 KOG2651 rRNA adenine N-6-methy 93.6 0.18 3.9E-06 46.7 6.1 53 154-206 143-195 (476)
277 PF06962 rRNA_methylase: Putat 93.3 0.21 4.6E-06 40.0 5.5 49 189-237 1-53 (140)
278 COG1255 Uncharacterized protei 92.9 0.38 8.3E-06 37.2 6.0 61 164-236 13-76 (129)
279 COG0270 Dcm Site-specific DNA 92.8 0.27 5.9E-06 44.7 6.2 74 165-243 3-80 (328)
280 KOG1709 Guanidinoacetate methy 92.8 0.51 1.1E-05 40.7 7.3 74 163-237 100-176 (271)
281 PF03686 UPF0146: Uncharacteri 92.7 0.19 4.1E-06 39.5 4.2 61 164-236 13-76 (127)
282 KOG3201 Uncharacterized conser 92.6 0.036 7.9E-07 45.5 0.1 78 164-241 29-114 (201)
283 KOG2793 Putative N2,N2-dimethy 92.6 0.56 1.2E-05 41.1 7.5 78 164-242 86-174 (248)
284 KOG2920 Predicted methyltransf 92.0 0.11 2.3E-06 46.2 2.3 39 163-201 115-153 (282)
285 KOG4589 Cell division protein 91.8 0.24 5.3E-06 41.7 4.1 66 163-239 68-145 (232)
286 KOG0024 Sorbitol dehydrogenase 91.8 0.38 8.2E-06 43.7 5.6 45 161-205 166-212 (354)
287 COG1568 Predicted methyltransf 91.2 0.76 1.7E-05 41.0 6.8 75 163-238 151-229 (354)
288 COG1889 NOP1 Fibrillarin-like 90.8 1.4 3E-05 37.7 7.6 72 163-236 75-151 (231)
289 PRK10458 DNA cytosine methylas 90.4 1.4 2.9E-05 42.3 8.3 60 165-226 88-147 (467)
290 KOG1099 SAM-dependent methyltr 89.5 0.38 8.1E-06 41.8 3.3 72 165-247 42-132 (294)
291 KOG2912 Predicted DNA methylas 89.3 0.47 1E-05 43.1 3.9 74 168-242 106-190 (419)
292 PLN02668 indole-3-acetate carb 89.1 1.6 3.4E-05 40.8 7.4 30 220-249 151-181 (386)
293 PF02254 TrkA_N: TrkA-N domain 88.9 1.3 2.8E-05 33.3 5.7 57 173-236 4-68 (116)
294 KOG2360 Proliferation-associat 88.5 1.1 2.3E-05 41.6 5.8 71 156-226 205-277 (413)
295 PF03492 Methyltransf_7: SAM d 87.9 4.1 9E-05 37.2 9.3 84 164-250 16-127 (334)
296 KOG1253 tRNA methyltransferase 87.7 0.17 3.6E-06 48.3 0.1 75 161-235 106-188 (525)
297 TIGR00497 hsdM type I restrict 87.4 2.2 4.8E-05 41.1 7.6 78 164-241 217-304 (501)
298 cd08283 FDH_like_1 Glutathione 86.1 1.6 3.5E-05 40.2 5.7 46 161-206 181-228 (386)
299 PRK09880 L-idonate 5-dehydroge 85.8 2 4.4E-05 38.7 6.1 44 163-206 168-213 (343)
300 PF04989 CmcI: Cephalosporin h 85.8 1 2.3E-05 38.3 3.9 60 164-225 32-97 (206)
301 COG1063 Tdh Threonine dehydrog 85.7 1.6 3.5E-05 39.9 5.4 44 163-206 167-212 (350)
302 PTZ00357 methyltransferase; Pr 85.7 3 6.5E-05 41.8 7.3 71 166-236 702-798 (1072)
303 COG4798 Predicted methyltransf 85.5 1.5 3.3E-05 37.2 4.6 85 161-245 45-137 (238)
304 PF01234 NNMT_PNMT_TEMT: NNMT/ 85.4 0.59 1.3E-05 41.2 2.3 82 163-244 55-172 (256)
305 PF11899 DUF3419: Protein of u 84.6 3.6 7.8E-05 38.4 7.2 49 159-208 30-78 (380)
306 COG0863 DNA modification methy 84.3 3 6.6E-05 36.7 6.4 47 163-210 221-267 (302)
307 PRK08339 short chain dehydroge 84.2 7.2 0.00016 33.7 8.6 74 164-238 7-93 (263)
308 PRK07904 short chain dehydroge 83.9 5.8 0.00012 34.2 7.9 73 164-237 7-94 (253)
309 PRK08703 short chain dehydroge 83.7 9.7 0.00021 32.0 9.1 59 164-224 5-67 (239)
310 PRK07523 gluconate 5-dehydroge 83.3 7.2 0.00016 33.2 8.2 73 164-239 9-96 (255)
311 KOG0821 Predicted ribosomal RN 83.1 2 4.3E-05 37.3 4.4 62 164-226 50-111 (326)
312 PF07279 DUF1442: Protein of u 82.7 7.5 0.00016 33.4 7.7 83 154-236 31-121 (218)
313 TIGR02356 adenyl_thiF thiazole 82.7 3.7 8.1E-05 34.6 6.0 33 164-196 20-54 (202)
314 PRK05867 short chain dehydroge 82.4 8.5 0.00018 32.8 8.3 75 164-240 8-96 (253)
315 KOG1201 Hydroxysteroid 17-beta 82.3 5.9 0.00013 35.7 7.2 74 163-239 36-123 (300)
316 PRK06124 gluconate 5-dehydroge 82.1 10 0.00022 32.3 8.6 73 164-239 10-97 (256)
317 PF02086 MethyltransfD12: D12 82.0 2.8 6E-05 36.1 5.1 45 164-209 20-64 (260)
318 PRK08213 gluconate 5-dehydroge 81.8 8.9 0.00019 32.7 8.2 73 164-239 11-98 (259)
319 PRK07326 short chain dehydroge 81.8 7.8 0.00017 32.4 7.7 71 164-238 5-90 (237)
320 PRK07102 short chain dehydroge 81.7 7.9 0.00017 32.7 7.8 71 166-238 2-84 (243)
321 PRK06125 short chain dehydroge 81.1 11 0.00025 32.1 8.7 74 164-238 6-89 (259)
322 PRK08945 putative oxoacyl-(acy 81.0 9.4 0.0002 32.3 8.0 75 163-239 10-101 (247)
323 PRK08862 short chain dehydroge 81.0 9.4 0.0002 32.4 8.0 73 164-238 4-91 (227)
324 PRK07890 short chain dehydroge 80.9 12 0.00025 31.8 8.6 73 164-239 4-91 (258)
325 PF00106 adh_short: short chai 80.9 8.4 0.00018 30.3 7.3 73 167-240 2-90 (167)
326 PRK05876 short chain dehydroge 80.8 10 0.00022 33.1 8.4 75 164-240 5-93 (275)
327 PRK06172 short chain dehydroge 80.8 12 0.00025 31.8 8.5 73 164-239 6-93 (253)
328 PRK09291 short chain dehydroge 80.6 14 0.00031 31.2 9.0 71 166-239 3-82 (257)
329 PRK07677 short chain dehydroge 80.2 11 0.00025 31.9 8.3 71 166-238 2-86 (252)
330 PF01488 Shikimate_DH: Shikima 80.2 5 0.00011 31.4 5.6 72 163-239 10-84 (135)
331 KOG0822 Protein kinase inhibit 80.0 2 4.3E-05 41.6 3.7 71 165-236 368-445 (649)
332 PRK07454 short chain dehydroge 79.9 13 0.00028 31.2 8.5 73 164-239 5-92 (241)
333 PRK07035 short chain dehydroge 79.9 13 0.00027 31.6 8.4 74 164-239 7-94 (252)
334 PRK07063 short chain dehydroge 79.8 12 0.00026 31.9 8.4 75 164-239 6-95 (260)
335 cd01487 E1_ThiF_like E1_ThiF_l 79.8 7.5 0.00016 31.9 6.7 71 167-237 1-95 (174)
336 PRK06949 short chain dehydroge 79.5 13 0.00029 31.5 8.5 73 164-239 8-95 (258)
337 KOG1562 Spermidine synthase [A 79.3 2.4 5.1E-05 38.2 3.7 74 163-236 120-201 (337)
338 PRK12826 3-ketoacyl-(acyl-carr 79.2 13 0.00029 31.1 8.3 72 164-238 5-91 (251)
339 COG1064 AdhP Zn-dependent alco 78.5 5.1 0.00011 36.8 5.7 45 161-206 163-209 (339)
340 PRK06194 hypothetical protein; 78.4 13 0.00028 32.3 8.2 74 164-240 5-93 (287)
341 KOG2539 Mitochondrial/chloropl 78.1 1.2 2.6E-05 42.4 1.6 82 163-244 199-288 (491)
342 PRK07814 short chain dehydroge 78.1 14 0.0003 31.7 8.2 72 164-238 9-95 (263)
343 PRK07097 gluconate 5-dehydroge 78.0 15 0.00032 31.6 8.4 75 164-240 9-97 (265)
344 PF05050 Methyltransf_21: Meth 78.0 7.3 0.00016 30.6 6.0 52 170-221 1-60 (167)
345 COG5459 Predicted rRNA methyla 77.5 3 6.5E-05 38.6 3.9 81 163-243 112-195 (484)
346 PRK08217 fabG 3-ketoacyl-(acyl 77.5 17 0.00037 30.5 8.5 73 164-239 4-91 (253)
347 PF05206 TRM13: Methyltransfer 77.1 7.4 0.00016 34.4 6.2 64 163-227 17-87 (259)
348 COG5379 BtaA S-adenosylmethion 77.1 7.3 0.00016 35.2 6.1 46 163-209 62-107 (414)
349 PRK12475 thiamine/molybdopteri 76.7 8.3 0.00018 35.3 6.7 73 164-236 23-122 (338)
350 PRK03659 glutathione-regulated 76.3 6.4 0.00014 38.9 6.2 61 166-236 401-470 (601)
351 PRK07478 short chain dehydroge 76.2 19 0.0004 30.6 8.5 75 164-240 5-93 (254)
352 cd01065 NAD_bind_Shikimate_DH 76.2 21 0.00045 27.9 8.2 44 163-206 17-62 (155)
353 PRK05866 short chain dehydroge 76.1 17 0.00037 32.0 8.4 72 164-238 39-125 (293)
354 PRK05786 fabG 3-ketoacyl-(acyl 76.1 19 0.00041 30.1 8.4 58 164-225 4-65 (238)
355 PLN02989 cinnamyl-alcohol dehy 76.1 13 0.00029 32.9 7.8 75 164-240 4-87 (325)
356 PRK07109 short chain dehydroge 76.1 17 0.00037 32.8 8.5 74 164-239 7-94 (334)
357 COG1062 AdhC Zn-dependent alco 76.1 7 0.00015 36.0 5.8 46 161-206 182-229 (366)
358 PRK10669 putative cation:proto 75.7 6.7 0.00015 38.2 6.1 61 166-236 418-487 (558)
359 cd01488 Uba3_RUB Ubiquitin act 75.6 12 0.00027 33.5 7.3 70 167-236 1-94 (291)
360 PRK07666 fabG 3-ketoacyl-(acyl 75.6 18 0.00039 30.3 8.2 73 164-239 6-93 (239)
361 PRK07062 short chain dehydroge 75.5 19 0.00042 30.7 8.4 75 164-239 7-96 (265)
362 COG1748 LYS9 Saccharopine dehy 75.4 9.2 0.0002 35.8 6.6 69 166-238 2-76 (389)
363 PRK07024 short chain dehydroge 74.6 14 0.00031 31.5 7.4 70 166-239 3-87 (257)
364 PRK08643 acetoin reductase; Va 74.4 21 0.00045 30.3 8.3 70 166-238 3-87 (256)
365 PRK06139 short chain dehydroge 74.3 19 0.00042 32.5 8.4 74 164-239 6-93 (330)
366 COG0569 TrkA K+ transport syst 74.1 16 0.00034 31.4 7.4 64 167-236 2-72 (225)
367 PRK13394 3-hydroxybutyrate deh 74.0 18 0.0004 30.6 7.9 73 164-239 6-93 (262)
368 PRK09424 pntA NAD(P) transhydr 74.0 6.8 0.00015 38.0 5.5 43 163-206 163-207 (509)
369 PRK09496 trkA potassium transp 73.8 24 0.00052 33.0 9.2 65 164-236 230-303 (453)
370 PRK06113 7-alpha-hydroxysteroi 73.8 22 0.00049 30.2 8.4 74 164-239 10-97 (255)
371 KOG2198 tRNA cytosine-5-methyl 73.7 10 0.00022 35.2 6.3 81 157-237 148-243 (375)
372 PRK07576 short chain dehydroge 73.5 22 0.00048 30.6 8.3 72 164-238 8-94 (264)
373 PRK09242 tropinone reductase; 73.4 22 0.00048 30.2 8.2 75 164-239 8-97 (257)
374 TIGR03206 benzo_BadH 2-hydroxy 73.4 25 0.00054 29.5 8.5 73 164-239 2-89 (250)
375 PRK05597 molybdopterin biosynt 73.4 11 0.00024 34.7 6.6 74 164-237 27-125 (355)
376 TIGR01963 PHB_DH 3-hydroxybuty 73.3 19 0.00042 30.3 7.8 70 167-239 3-87 (255)
377 PRK12429 3-hydroxybutyrate deh 73.3 21 0.00045 30.1 8.0 72 165-239 4-90 (258)
378 PRK07688 thiamine/molybdopteri 73.3 12 0.00026 34.3 6.7 73 164-236 23-122 (339)
379 KOG2013 SMT3/SUMO-activating c 73.2 4.6 0.0001 38.7 4.0 73 164-236 11-109 (603)
380 PRK06935 2-deoxy-D-gluconate 3 73.1 24 0.00052 30.0 8.4 72 164-238 14-99 (258)
381 PRK08589 short chain dehydroge 73.1 22 0.00048 30.7 8.3 73 164-239 5-91 (272)
382 cd08230 glucose_DH Glucose deh 72.9 9.4 0.0002 34.5 6.0 42 163-205 171-217 (355)
383 PRK03562 glutathione-regulated 72.7 7.4 0.00016 38.7 5.6 64 165-236 400-470 (621)
384 COG1086 Predicted nucleoside-d 72.6 20 0.00042 35.3 8.2 89 161-250 246-345 (588)
385 PF03514 GRAS: GRAS domain fam 72.4 20 0.00043 33.3 8.1 92 153-246 100-216 (374)
386 PRK08644 thiamine biosynthesis 72.3 19 0.0004 30.6 7.4 73 164-236 27-123 (212)
387 PRK08277 D-mannonate oxidoredu 72.1 24 0.00053 30.4 8.3 74 164-239 9-96 (278)
388 cd00757 ThiF_MoeB_HesA_family 72.0 10 0.00023 32.4 5.8 73 164-236 20-117 (228)
389 PRK09072 short chain dehydroge 71.9 25 0.00055 30.0 8.3 73 164-239 4-89 (263)
390 PRK08340 glucose-1-dehydrogena 71.8 20 0.00043 30.6 7.6 70 167-239 2-85 (259)
391 PRK08223 hypothetical protein; 71.6 17 0.00037 32.6 7.1 73 164-236 26-123 (287)
392 PLN03209 translocon at the inn 71.2 17 0.00038 35.8 7.7 73 164-238 79-167 (576)
393 PRK12939 short chain dehydroge 70.7 26 0.00057 29.3 8.0 72 164-238 6-92 (250)
394 PRK05653 fabG 3-ketoacyl-(acyl 70.6 27 0.00059 29.0 8.0 59 164-225 4-66 (246)
395 cd01492 Aos1_SUMO Ubiquitin ac 70.6 18 0.0004 30.3 6.8 74 164-237 20-117 (197)
396 PRK06914 short chain dehydroge 70.5 29 0.00062 29.9 8.4 72 165-238 3-89 (280)
397 PRK07231 fabG 3-ketoacyl-(acyl 70.2 29 0.00063 29.1 8.2 72 164-239 4-90 (251)
398 PRK05854 short chain dehydroge 70.2 31 0.00067 30.7 8.7 76 164-240 13-103 (313)
399 PRK08085 gluconate 5-dehydroge 70.0 30 0.00066 29.3 8.3 74 164-239 8-95 (254)
400 PRK07774 short chain dehydroge 70.0 31 0.00066 29.0 8.3 73 164-239 5-92 (250)
401 PRK06720 hypothetical protein; 69.8 38 0.00082 27.5 8.4 75 164-240 15-103 (169)
402 PF03721 UDPG_MGDP_dh_N: UDP-g 69.8 9.1 0.0002 31.8 4.8 37 168-205 3-41 (185)
403 PRK08328 hypothetical protein; 69.7 18 0.00038 31.2 6.7 32 164-195 26-59 (231)
404 PRK05650 short chain dehydroge 69.7 29 0.00063 29.8 8.2 70 167-239 2-86 (270)
405 PRK08251 short chain dehydroge 69.6 30 0.00064 29.1 8.1 72 166-239 3-90 (248)
406 PRK08762 molybdopterin biosynt 69.6 13 0.00028 34.5 6.2 73 164-236 134-231 (376)
407 KOG1098 Putative SAM-dependent 69.5 5.5 0.00012 39.4 3.7 35 163-197 43-79 (780)
408 cd08237 ribitol-5-phosphate_DH 69.4 10 0.00022 34.2 5.4 43 163-205 162-207 (341)
409 cd01483 E1_enzyme_family Super 69.3 28 0.00061 27.1 7.4 71 167-237 1-96 (143)
410 PRK12829 short chain dehydroge 69.2 28 0.00062 29.4 8.0 71 163-238 9-94 (264)
411 COG3510 CmcI Cephalosporin hyd 69.2 7.6 0.00016 33.0 4.1 58 163-225 68-130 (237)
412 cd08254 hydroxyacyl_CoA_DH 6-h 68.8 14 0.0003 32.6 6.1 43 162-205 163-207 (338)
413 PLN02662 cinnamyl-alcohol dehy 68.5 19 0.00041 31.7 6.9 72 165-238 4-84 (322)
414 PF02719 Polysacc_synt_2: Poly 68.5 7.8 0.00017 34.9 4.3 79 171-249 3-96 (293)
415 KOG0022 Alcohol dehydrogenase, 68.3 13 0.00028 34.0 5.6 46 161-206 189-236 (375)
416 PRK08267 short chain dehydroge 68.3 27 0.00059 29.7 7.7 71 166-240 2-87 (260)
417 PRK08303 short chain dehydroge 68.0 27 0.00059 31.1 7.8 73 164-238 7-103 (305)
418 PRK09186 flagellin modificatio 67.5 37 0.0008 28.6 8.3 73 164-238 3-91 (256)
419 KOG2798 Putative trehalase [Ca 67.3 4.5 9.7E-05 36.8 2.5 37 164-201 150-186 (369)
420 COG4301 Uncharacterized conser 67.2 18 0.0004 32.0 6.1 76 149-224 59-144 (321)
421 KOG1371 UDP-glucose 4-epimeras 66.7 7 0.00015 35.7 3.6 72 166-239 3-86 (343)
422 PRK05599 hypothetical protein; 66.6 32 0.0007 29.2 7.8 70 167-238 2-85 (246)
423 PLN02780 ketoreductase/ oxidor 66.5 34 0.00073 30.7 8.2 60 164-224 52-115 (320)
424 PLN02740 Alcohol dehydrogenase 66.3 13 0.00029 34.0 5.6 45 161-205 195-241 (381)
425 cd01484 E1-2_like Ubiquitin ac 66.2 29 0.00063 30.1 7.4 70 167-236 1-97 (234)
426 PF02737 3HCDH_N: 3-hydroxyacy 66.2 16 0.00036 30.0 5.6 41 168-209 2-44 (180)
427 PRK06181 short chain dehydroge 66.1 39 0.00084 28.7 8.2 70 166-238 2-86 (263)
428 PRK12384 sorbitol-6-phosphate 66.1 39 0.00084 28.6 8.2 71 166-238 3-89 (259)
429 cd05188 MDR Medium chain reduc 65.9 21 0.00045 30.0 6.4 44 163-206 133-177 (271)
430 cd00401 AdoHcyase S-adenosyl-L 65.9 15 0.00033 34.7 5.9 43 162-205 199-243 (413)
431 TIGR00561 pntA NAD(P) transhyd 65.7 18 0.0004 35.1 6.5 41 164-205 163-205 (511)
432 TIGR02415 23BDH acetoin reduct 65.6 37 0.00079 28.6 7.9 69 167-238 2-85 (254)
433 PRK12481 2-deoxy-D-gluconate 3 65.5 36 0.00077 29.0 7.8 72 164-239 7-92 (251)
434 PRK07791 short chain dehydroge 65.3 36 0.00078 29.8 8.0 75 164-240 5-102 (286)
435 TIGR02354 thiF_fam2 thiamine b 65.2 33 0.00072 28.8 7.3 33 164-196 20-54 (200)
436 PRK06138 short chain dehydroge 65.1 42 0.00091 28.1 8.2 72 164-239 4-90 (252)
437 PRK15181 Vi polysaccharide bio 64.9 23 0.0005 32.0 6.8 75 164-240 14-100 (348)
438 PRK05565 fabG 3-ketoacyl-(acyl 64.1 43 0.00093 27.9 8.0 72 164-238 4-91 (247)
439 PRK07831 short chain dehydroge 63.7 45 0.00098 28.4 8.2 76 164-240 16-107 (262)
440 PRK12548 shikimate 5-dehydroge 63.7 41 0.0009 29.9 8.1 76 164-241 125-210 (289)
441 PRK07792 fabG 3-ketoacyl-(acyl 63.4 43 0.00094 29.6 8.2 75 163-239 10-98 (306)
442 PRK12823 benD 1,6-dihydroxycyc 63.1 49 0.0011 28.0 8.3 72 164-238 7-92 (260)
443 PRK05875 short chain dehydroge 63.0 50 0.0011 28.3 8.4 73 164-238 6-94 (276)
444 KOG3924 Putative protein methy 62.9 8.5 0.00018 36.0 3.5 77 163-239 191-281 (419)
445 TIGR02818 adh_III_F_hyde S-(hy 62.8 22 0.00047 32.4 6.3 46 161-206 182-229 (368)
446 PLN02657 3,8-divinyl protochlo 62.5 24 0.00052 32.7 6.5 72 163-237 58-143 (390)
447 PRK07453 protochlorophyllide o 62.4 46 0.00099 29.6 8.2 74 164-240 5-93 (322)
448 PRK05600 thiamine biosynthesis 62.4 27 0.00058 32.4 6.8 73 164-236 40-137 (370)
449 PLN02427 UDP-apiose/xylose syn 62.0 21 0.00046 32.7 6.1 75 163-238 12-94 (386)
450 PRK06035 3-hydroxyacyl-CoA deh 61.9 21 0.00045 31.6 5.8 41 166-207 4-46 (291)
451 PRK06200 2,3-dihydroxy-2,3-dih 61.8 47 0.001 28.3 8.0 72 164-240 5-90 (263)
452 TIGR03201 dearomat_had 6-hydro 61.7 20 0.00043 32.4 5.7 43 162-205 164-208 (349)
453 PRK06701 short chain dehydroge 61.7 46 0.001 29.2 8.0 74 164-239 45-133 (290)
454 PRK06940 short chain dehydroge 61.6 49 0.0011 28.7 8.1 69 167-239 4-85 (275)
455 PRK09135 pteridine reductase; 61.6 55 0.0012 27.3 8.2 74 164-239 5-94 (249)
456 cd08281 liver_ADH_like1 Zinc-d 61.5 20 0.00042 32.7 5.7 44 162-205 189-234 (371)
457 PRK06198 short chain dehydroge 61.4 56 0.0012 27.6 8.3 73 164-238 5-92 (260)
458 PRK08226 short chain dehydroge 61.0 51 0.0011 28.0 8.0 73 164-240 5-92 (263)
459 PRK07775 short chain dehydroge 60.9 57 0.0012 28.2 8.3 72 164-238 9-95 (274)
460 PRK07819 3-hydroxybutyryl-CoA 60.7 21 0.00046 31.7 5.7 42 166-208 6-49 (286)
461 KOG0725 Reductases with broad 60.5 82 0.0018 27.8 9.3 77 163-240 6-99 (270)
462 PRK06196 oxidoreductase; Provi 60.4 42 0.00092 29.7 7.6 70 164-240 25-109 (315)
463 PRK07832 short chain dehydroge 60.4 52 0.0011 28.3 8.0 70 167-238 2-86 (272)
464 TIGR00853 pts-lac PTS system, 60.3 23 0.00049 26.2 4.8 54 166-238 4-58 (95)
465 PRK08265 short chain dehydroge 60.2 51 0.0011 28.2 7.9 71 164-239 5-89 (261)
466 TIGR03366 HpnZ_proposed putati 60.0 20 0.00044 31.2 5.4 44 163-206 119-164 (280)
467 TIGR03451 mycoS_dep_FDH mycoth 59.8 22 0.00047 32.2 5.7 44 162-205 174-219 (358)
468 PRK08628 short chain dehydroge 59.8 55 0.0012 27.7 8.0 71 164-238 6-91 (258)
469 PRK05855 short chain dehydroge 59.7 48 0.001 31.6 8.3 74 164-240 314-402 (582)
470 PRK07877 hypothetical protein; 59.6 23 0.0005 35.9 6.2 74 163-236 105-202 (722)
471 PF04072 LCM: Leucine carboxyl 59.3 21 0.00045 29.4 5.0 79 164-243 78-170 (183)
472 PRK09496 trkA potassium transp 59.3 32 0.00069 32.2 6.9 61 167-236 2-71 (453)
473 PRK06197 short chain dehydroge 59.1 62 0.0014 28.4 8.4 75 164-240 15-105 (306)
474 COG2933 Predicted SAM-dependen 59.1 25 0.00054 31.5 5.5 68 163-238 210-278 (358)
475 PRK07411 hypothetical protein; 58.7 27 0.00059 32.6 6.2 74 164-237 37-135 (390)
476 cd00755 YgdL_like Family of ac 58.6 35 0.00076 29.5 6.4 33 164-196 10-44 (231)
477 PRK14106 murD UDP-N-acetylmura 58.2 46 0.00099 31.2 7.7 70 164-238 4-76 (450)
478 PLN02253 xanthoxin dehydrogena 58.2 65 0.0014 27.7 8.2 72 164-239 17-103 (280)
479 TIGR01202 bchC 2-desacetyl-2-h 58.1 17 0.00038 32.2 4.7 42 164-205 144-187 (308)
480 PRK05690 molybdopterin biosynt 57.6 35 0.00076 29.6 6.4 73 164-236 31-128 (245)
481 PF00107 ADH_zinc_N: Zinc-bind 57.4 12 0.00026 28.2 3.1 32 174-206 1-33 (130)
482 PRK07533 enoyl-(acyl carrier p 57.1 63 0.0014 27.6 7.9 74 164-240 9-98 (258)
483 cd08301 alcohol_DH_plants Plan 56.9 27 0.00058 31.7 5.8 45 161-205 184-230 (369)
484 PRK07067 sorbitol dehydrogenas 56.9 61 0.0013 27.4 7.8 70 164-239 5-89 (257)
485 COG4017 Uncharacterized protei 56.9 21 0.00046 30.4 4.6 66 163-240 43-109 (254)
486 TIGR01832 kduD 2-deoxy-D-gluco 56.9 66 0.0014 26.9 7.9 72 164-239 4-89 (248)
487 PRK05993 short chain dehydroge 56.9 42 0.00091 29.0 6.8 65 165-238 4-84 (277)
488 PRK08278 short chain dehydroge 56.8 56 0.0012 28.2 7.6 74 164-239 5-99 (273)
489 PRK07825 short chain dehydroge 55.7 59 0.0013 27.9 7.5 68 164-238 4-86 (273)
490 PRK11730 fadB multifunctional 55.5 26 0.00056 35.5 5.8 42 166-208 314-357 (715)
491 PRK05808 3-hydroxybutyryl-CoA 55.3 32 0.0007 30.2 5.8 38 167-205 5-44 (282)
492 PLN02827 Alcohol dehydrogenase 55.2 29 0.00062 31.9 5.7 45 161-205 190-236 (378)
493 PRK07201 short chain dehydroge 55.1 65 0.0014 31.7 8.5 73 164-239 370-457 (657)
494 cd08232 idonate-5-DH L-idonate 55.1 31 0.00068 30.6 5.8 42 164-205 165-208 (339)
495 cd08255 2-desacetyl-2-hydroxye 54.6 33 0.00072 29.4 5.8 44 163-206 96-141 (277)
496 PRK07806 short chain dehydroge 54.5 85 0.0018 26.2 8.2 72 164-238 5-92 (248)
497 cd01489 Uba2_SUMO Ubiquitin ac 54.4 61 0.0013 29.4 7.5 70 167-236 1-96 (312)
498 PRK15116 sulfur acceptor prote 54.4 78 0.0017 28.1 8.1 33 164-196 29-63 (268)
499 PRK08993 2-deoxy-D-gluconate 3 54.3 68 0.0015 27.2 7.6 72 164-239 9-94 (253)
500 PRK06114 short chain dehydroge 54.2 81 0.0018 26.7 8.1 74 164-240 7-96 (254)
No 1
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.95 E-value=4.2e-27 Score=192.22 Aligned_cols=149 Identities=56% Similarity=0.929 Sum_probs=132.4
Q ss_pred CCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCC
Q 025428 85 PEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLS 164 (253)
Q Consensus 85 ~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~ 164 (253)
.++..+.||+++|||+.|+.++.||.++++.|++||++.+.+++..|....+. +.+ +. ..
T Consensus 8 adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r--v~-----------------~~ 67 (227)
T KOG1271|consen 8 ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR--VS-----------------KQ 67 (227)
T ss_pred ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh--hc-----------------cc
Confidence 56889999999999999999999999999999999999999999999976653 111 00 12
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC-CCCccEEEEccccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGTLD 241 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~-~~~fD~Vi~~~~l~ 241 (253)
-.+|||+|||+|.++..|++.|+. ..+|+|+|+.++++|+..+++.+++| |+|.+.|+....+ +++||+|+..++++
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 239999999999999999999887 49999999999999999999999987 9999999999754 59999999999999
Q ss_pred eeccCCCCCCCC
Q 025428 242 AIGLHPDGPLKR 253 (253)
Q Consensus 242 ~i~~~pd~~~~~ 253 (253)
+|.++|+.+.+|
T Consensus 148 AisLs~d~~~~r 159 (227)
T KOG1271|consen 148 AISLSPDGPVGR 159 (227)
T ss_pred eeecCCCCcccc
Confidence 999999998765
No 2
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.79 E-value=9.4e-19 Score=151.28 Aligned_cols=129 Identities=20% Similarity=0.357 Sum_probs=111.8
Q ss_pred CcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHH
Q 025428 50 TLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVA 129 (253)
Q Consensus 50 ~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~ 129 (253)
+++..++...+.++|++ ++..||.+|+. +++|.+..|......
T Consensus 3 ~~~~~~k~~~v~~vF~~-----ia~~YD~~n~~-------~S~g~~~~Wr~~~i~------------------------- 45 (238)
T COG2226 3 MVAKDEKQEKVQKVFDK-----VAKKYDLMNDL-------MSFGLHRLWRRALIS------------------------- 45 (238)
T ss_pred cccccccHHHHHHHHHh-----hHHHHHhhccc-------ccCcchHHHHHHHHH-------------------------
Confidence 35566778899999988 99999999988 889999999987211
Q ss_pred HhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH
Q 025428 130 SWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 130 ~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
+. ...++.+|||+|||||.++..+++. |..+|+|+|+|+.||+.|++++.
T Consensus 46 -~~----------------------------~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~ 96 (238)
T COG2226 46 -LL----------------------------GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK 96 (238)
T ss_pred -hh----------------------------CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence 22 1126789999999999999999998 54599999999999999999999
Q ss_pred hcCCCceEEEEeccCCCcCC-CCccEEEEccccceec
Q 025428 209 RDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIG 244 (253)
Q Consensus 209 ~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~ 244 (253)
..+..+++|+++|++++|++ ++||+|++...|+++.
T Consensus 97 ~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~ 133 (238)
T COG2226 97 KKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT 133 (238)
T ss_pred ccCccceEEEEechhhCCCCCCccCEEEeeehhhcCC
Confidence 88877799999999999997 9999999999999874
No 3
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.65 E-value=2.4e-15 Score=133.58 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=125.0
Q ss_pred eeeeccCCCcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcce-eec
Q 025428 42 SIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE-VWF 120 (253)
Q Consensus 42 ~~~~~~~~~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e-~wf 120 (253)
.++++|+.+.+..++..+....+.. +. ...... ...-..+.|...|...+.+. ..++ .|.
T Consensus 57 ~~~a~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~----------~~~~~e~DW~~~wk~~~~P~----rig~~f~I 117 (300)
T COG2264 57 KVKALFPADTDLALLLAELEALLAL---LE--LFAHVI----------EQEEDEEDWEREWKKYFHPV----RIGERFVI 117 (300)
T ss_pred eeEeeecccchHHHHHHHHHHHhcc---cc--ccccee----------EeecChHHHHHHHHhcCCcE----EeeeeEEE
Confidence 4788999999999998888888833 21 111000 11122455666655443333 3444 233
Q ss_pred CcchhHHHHHhh------hhcceeecCCCcCCccccc-cchHHHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEE
Q 025428 121 GADVMDVVASWT------KSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTG 192 (253)
Q Consensus 121 ~~~~~~~~~~w~------~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~g 192 (253)
. ++|. ...+.++.++..++++++. +..+++++.++ +++.+|||+|||+|.+++..++.|+++|+|
T Consensus 118 ~-------Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g 190 (300)
T COG2264 118 V-------PSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVG 190 (300)
T ss_pred C-------CCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEE
Confidence 2 2354 4567899999999998865 88888999887 788999999999999999999999999999
Q ss_pred EeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcc
Q 025428 193 VDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 193 vD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
+|+++-+++.|++|+..|++.. ++....+....+..++||+|++|-
T Consensus 191 ~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI 237 (300)
T COG2264 191 VDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI 237 (300)
T ss_pred ecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence 9999999999999999999864 444444444444447999999976
No 4
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.64 E-value=8e-16 Score=133.38 Aligned_cols=81 Identities=27% Similarity=0.411 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
.++.+|||+|||||.++..++++ + ..+|+|+|+|++|++.|+++++..+..+|+++++|++++|++ ++||+|++...
T Consensus 46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg 125 (233)
T PF01209_consen 46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG 125 (233)
T ss_dssp -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence 46789999999999999999987 3 248999999999999999999988888999999999999986 89999999999
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
|+.+
T Consensus 126 lrn~ 129 (233)
T PF01209_consen 126 LRNF 129 (233)
T ss_dssp GGG-
T ss_pred HHhh
Confidence 9876
No 5
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.63 E-value=1.6e-15 Score=130.43 Aligned_cols=134 Identities=14% Similarity=0.273 Sum_probs=112.6
Q ss_pred eeccC-CCcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCc
Q 025428 44 KSEYG-STLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGA 122 (253)
Q Consensus 44 ~~~~~-~~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~ 122 (253)
.|-|| +|+.+.++.+.+..||++ ++..||.|||. +++|.++.|++.+-.
T Consensus 45 ~Thfgf~tV~e~eke~~V~~vF~~-----vA~~YD~mND~-------mSlGiHRlWKd~~v~------------------ 94 (296)
T KOG1540|consen 45 CTHFGFKTVRESEKERLVHHVFES-----VAKKYDIMNDA-------MSLGIHRLWKDMFVS------------------ 94 (296)
T ss_pred cccccccccchhhhhhHHHHHHHH-----HHHHHHHHHHH-------hhcchhHHHHHHhhh------------------
Confidence 34555 478899999999999988 89999999999 999999999886222
Q ss_pred chhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CC------CcEEEEeC
Q 025428 123 DVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDY 195 (253)
Q Consensus 123 ~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~------~~v~gvD~ 195 (253)
|. .+..+.++||++||||.+++.+.++ +. ++|+++|+
T Consensus 95 --------~L----------------------------~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di 138 (296)
T KOG1540|consen 95 --------KL----------------------------GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI 138 (296)
T ss_pred --------cc----------------------------CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC
Confidence 32 1235689999999999999999987 33 58999999
Q ss_pred CHHHHHHHHHHHHhcCCC---ceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428 196 SEDAINLAQSLANRDGFS---CIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI 243 (253)
Q Consensus 196 s~~~l~~ar~~~~~~g~~---~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i 243 (253)
|++||++++++.++.++. .+.|+++|++++|++ .+||.++..+-+...
T Consensus 139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~ 190 (296)
T KOG1540|consen 139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV 190 (296)
T ss_pred CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC
Confidence 999999999999877764 389999999999998 999999987766544
No 6
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.60 E-value=3e-15 Score=133.66 Aligned_cols=140 Identities=22% Similarity=0.310 Sum_probs=96.7
Q ss_pred hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhhhhcceeecCCCcCCccccc-cchHHHHhccC-CCCCEEEEE
Q 025428 95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSVLDI 171 (253)
Q Consensus 95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~VLDi 171 (253)
.+.|...|++.+.++. .++ .|.-.. -+....-..+....|.+++.++++.+. ++.+++++.++ .++.+|||+
T Consensus 94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~-w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDv 168 (295)
T PF06325_consen 94 EEDWEEAWKKYFKPIR----VGDRLVIVPS-WEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDV 168 (295)
T ss_dssp HHCHHHHHHHH---EE----ECTTEEEEET-T----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEE
T ss_pred cccchHHHHhcCccEE----ECCcEEEECC-CcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence 5678888888777765 232 222111 011111234556789999999998755 88888998887 667899999
Q ss_pred cCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 172 GcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
|||||.+++..++.|+++|+|+|+++.+++.|++|++.||+.. ++......+. ...+||+|++|-..+
T Consensus 169 G~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-~~~~~dlvvANI~~~ 236 (295)
T PF06325_consen 169 GCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-VEGKFDLVVANILAD 236 (295)
T ss_dssp S-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-CCS-EEEEEEES-HH
T ss_pred CCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-ccccCCEEEECCCHH
Confidence 9999999999999999999999999999999999999999975 3322222222 238999999976544
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.59 E-value=1.1e-14 Score=117.57 Aligned_cols=81 Identities=35% Similarity=0.564 Sum_probs=71.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHh-c-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT 239 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~-~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~ 239 (253)
++.+|||+|||+|.++..+++ . ...+++|+|+|++|++.|+++++..++.+++|+++|+.+++ ++++||+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 578999999999999999994 3 23489999999999999999999999989999999999976 4489999999999
Q ss_pred cceec
Q 025428 240 LDAIG 244 (253)
Q Consensus 240 l~~i~ 244 (253)
+|++.
T Consensus 83 l~~~~ 87 (152)
T PF13847_consen 83 LHHFP 87 (152)
T ss_dssp GGGTS
T ss_pred hhhcc
Confidence 98763
No 8
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.58 E-value=2.1e-14 Score=109.46 Aligned_cols=80 Identities=31% Similarity=0.505 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecc-CCCcCCCCccEEEEcc-c
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T 239 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~-~~~~~~~~fD~Vi~~~-~ 239 (253)
++.+|||||||+|.++..++++ +..+|+|+|+|++|++.|++++...+. .+++++++|+ ......+.||+|++.+ +
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 4679999999999999999993 344899999999999999999965554 4799999999 4455557899999999 5
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
++++
T Consensus 81 ~~~~ 84 (112)
T PF12847_consen 81 LHFL 84 (112)
T ss_dssp GGGC
T ss_pred cccc
Confidence 5543
No 9
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.56 E-value=1.8e-14 Score=121.74 Aligned_cols=90 Identities=21% Similarity=0.314 Sum_probs=77.8
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF 231 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f 231 (253)
.+.+++.+.. .++.+|||+|||+|.++..|+++|. +|+|+|+|+.|++.++++....++.++++.++|+.+++++++|
T Consensus 19 ~~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 19 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred hHHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 3344444443 3568999999999999999999976 9999999999999999999888887899999999888777789
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|++..++|++
T Consensus 97 D~I~~~~~~~~~ 108 (197)
T PRK11207 97 DFILSTVVLMFL 108 (197)
T ss_pred CEEEEecchhhC
Confidence 999999999886
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.49 E-value=2.2e-14 Score=122.91 Aligned_cols=79 Identities=33% Similarity=0.488 Sum_probs=73.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
.++.+|||+|||-|.++..+|+.|+ +|+|+|+++.+|+.|+..+...++ ++++.+..++++... ++||+|+|..+|+
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4788999999999999999999986 999999999999999999999887 688999999988765 8999999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 136 Hv 137 (243)
T COG2227 136 HV 137 (243)
T ss_pred cc
Confidence 98
No 11
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.48 E-value=2.1e-13 Score=115.11 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=74.3
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ 232 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD 232 (253)
..+++.+.. .++.+|||+|||+|.++..++++|. +|+|+|+|+.|++.+++++..+++ ++.+.+.|+...+++++||
T Consensus 20 ~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD 96 (195)
T TIGR00477 20 SAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYD 96 (195)
T ss_pred HHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCC
Confidence 344444443 3467999999999999999999976 999999999999999999888887 4888888987766667899
Q ss_pred EEEEcccccee
Q 025428 233 LVMDKGTLDAI 243 (253)
Q Consensus 233 ~Vi~~~~l~~i 243 (253)
+|++..++|++
T Consensus 97 ~I~~~~~~~~~ 107 (195)
T TIGR00477 97 FIFSTVVFMFL 107 (195)
T ss_pred EEEEecccccC
Confidence 99999999987
No 12
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.48 E-value=4.9e-13 Score=117.79 Aligned_cols=81 Identities=23% Similarity=0.329 Sum_probs=69.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHh---cCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKLE-RQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~---~g~~~i~~~~~D~~~~~~~-~~fD~Vi~ 236 (253)
.++.+|||+|||||.++..++++ +. .+|+|+|+|++|++.|+++... .+..+++++++|+.+++++ ++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 45779999999999999999886 32 4899999999999999987542 2345799999999999886 79999999
Q ss_pred cccccee
Q 025428 237 KGTLDAI 243 (253)
Q Consensus 237 ~~~l~~i 243 (253)
..++|++
T Consensus 152 ~~~l~~~ 158 (261)
T PLN02233 152 GYGLRNV 158 (261)
T ss_pred ecccccC
Confidence 9999987
No 13
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.47 E-value=1.8e-13 Score=117.10 Aligned_cols=80 Identities=23% Similarity=0.200 Sum_probs=65.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------------CCCceEEEEeccCCCcCC--
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE-- 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------------g~~~i~~~~~D~~~~~~~-- 228 (253)
.++.+|||+|||.|..+..||.+|+ +|+|+|+|+.+|+.+.+..... .-.+++++++|+.+++..
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 3667999999999999999999998 8999999999999864422110 112689999999998743
Q ss_pred CCccEEEEcccccee
Q 025428 229 RQFQLVMDKGTLDAI 243 (253)
Q Consensus 229 ~~fD~Vi~~~~l~~i 243 (253)
++||.|+...+++|+
T Consensus 112 ~~fD~i~D~~~~~~l 126 (213)
T TIGR03840 112 GPVDAVYDRAALIAL 126 (213)
T ss_pred CCcCEEEechhhccC
Confidence 689999999999887
No 14
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.47 E-value=3.9e-13 Score=112.94 Aligned_cols=89 Identities=30% Similarity=0.413 Sum_probs=72.5
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF 231 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f 231 (253)
.+.+++.+.. .+..++||+|||.|+.+.+||++|+ .|+++|+|+.+++.+++.++..++ +|+..+.|+.+..+++.|
T Consensus 19 hs~v~~a~~~-~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~y 95 (192)
T PF03848_consen 19 HSEVLEAVPL-LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEY 95 (192)
T ss_dssp -HHHHHHCTT-S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTE
T ss_pred cHHHHHHHhh-cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCc
Confidence 3445554443 4678999999999999999999999 899999999999999999988888 599999999998888899
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|++..+++++
T Consensus 96 D~I~st~v~~fL 107 (192)
T PF03848_consen 96 DFIVSTVVFMFL 107 (192)
T ss_dssp EEEEEESSGGGS
T ss_pred CEEEEEEEeccC
Confidence 999998899887
No 15
>PRK05785 hypothetical protein; Provisional
Probab=99.46 E-value=3.2e-13 Score=116.57 Aligned_cols=72 Identities=22% Similarity=0.273 Sum_probs=62.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA 242 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~ 242 (253)
++.+|||+|||||.++..+++....+|+|+|+|++|++.|+++ ..++++|+.+++++ ++||+|++..++|+
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~ 122 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA 122 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence 4679999999999999999988323999999999999999864 14678999999876 89999999999988
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
+
T Consensus 123 ~ 123 (226)
T PRK05785 123 S 123 (226)
T ss_pred c
Confidence 6
No 16
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.44 E-value=2.5e-13 Score=102.29 Aligned_cols=75 Identities=29% Similarity=0.475 Sum_probs=63.0
Q ss_pred EEEEcCCCcHHHHHHHhcC---C-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEc-cccc
Q 025428 168 VLDIGTGNGLLLQELSKQG---F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK-GTLD 241 (253)
Q Consensus 168 VLDiGcGtG~~~~~la~~g---~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~-~~l~ 241 (253)
|||+|||+|..+..+++.. . .+++|+|+|++|++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence 7999999999999999872 1 5999999999999999999988776 899999999998754 799999995 5598
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 80 ~~ 81 (101)
T PF13649_consen 80 HL 81 (101)
T ss_dssp GS
T ss_pred CC
Confidence 85
No 17
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.44 E-value=5.6e-13 Score=118.91 Aligned_cols=89 Identities=22% Similarity=0.386 Sum_probs=76.4
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF 231 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f 231 (253)
.+.++..+.. .++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.++++++..++ ++++.+.|+....++++|
T Consensus 109 ~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~f 185 (287)
T PRK12335 109 HSEVLEAVQT-VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEY 185 (287)
T ss_pred cHHHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCc
Confidence 3344544433 3456999999999999999999976 999999999999999999988888 899999999887667899
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|++..+||++
T Consensus 186 D~I~~~~vl~~l 197 (287)
T PRK12335 186 DFILSTVVLMFL 197 (287)
T ss_pred cEEEEcchhhhC
Confidence 999999999987
No 18
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=1e-12 Score=108.55 Aligned_cols=92 Identities=26% Similarity=0.439 Sum_probs=76.2
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 228 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~ 228 (253)
..+..|++.+... +..+|||+|||+|.++..+++++.. +|+++|+|+.+++.++++++.+++.++++++.|+.+...+
T Consensus 18 ~~t~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~ 96 (170)
T PF05175_consen 18 AGTRLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPD 96 (170)
T ss_dssp HHHHHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCT
T ss_pred HHHHHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccc
Confidence 3455666666664 7789999999999999999998554 6999999999999999999999987799999999887556
Q ss_pred CCccEEEEccccce
Q 025428 229 RQFQLVMDKGTLDA 242 (253)
Q Consensus 229 ~~fD~Vi~~~~l~~ 242 (253)
++||+|+++..++.
T Consensus 97 ~~fD~Iv~NPP~~~ 110 (170)
T PF05175_consen 97 GKFDLIVSNPPFHA 110 (170)
T ss_dssp TCEEEEEE---SBT
T ss_pred cceeEEEEccchhc
Confidence 89999999987653
No 19
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.44 E-value=4.7e-13 Score=113.83 Aligned_cols=77 Identities=27% Similarity=0.462 Sum_probs=66.2
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~ 238 (253)
...++.+|||+|||+|.++..+++. +..+++|+|+|++|++.|+++. .++.++++|+.+ ++ +++||+|++++
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKG 113 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence 3356679999999999999999887 4459999999999999999864 357889999988 55 48999999999
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
+|+|+
T Consensus 114 vL~hl 118 (204)
T TIGR03587 114 VLIHI 118 (204)
T ss_pred hhhhC
Confidence 99998
No 20
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.44 E-value=4.1e-13 Score=98.43 Aligned_cols=72 Identities=29% Similarity=0.511 Sum_probs=62.0
Q ss_pred EEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI 243 (253)
Q Consensus 169 LDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i 243 (253)
||+|||+|..+..+++++..+++|+|+++++++.++++.... ++.++++|+.+++++ ++||+|++..++||+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec
Confidence 899999999999999995559999999999999999987654 456999999999987 999999999999998
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.43 E-value=1.2e-12 Score=112.48 Aligned_cols=81 Identities=17% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++++..++.+++++++|+.+++++ ++||+|++..+
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 123 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG 123 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence 46789999999999999999976 3 248999999999999999999888887899999999988765 79999999988
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
+|++
T Consensus 124 l~~~ 127 (231)
T TIGR02752 124 LRNV 127 (231)
T ss_pred cccC
Confidence 8875
No 22
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.42 E-value=4.7e-13 Score=117.25 Aligned_cols=79 Identities=27% Similarity=0.382 Sum_probs=71.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CCCCccEEEEcccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL 240 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~~~fD~Vi~~~~l 240 (253)
++.+|||+|||+|.++..+++.|. +|+|+|+|++|++.|++++...++. +++++++|+.++. .+++||+|+++.++
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl 122 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL 122 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence 457999999999999999999975 9999999999999999999888864 6999999998764 34799999999999
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
||+
T Consensus 123 ~~~ 125 (255)
T PRK11036 123 EWV 125 (255)
T ss_pred Hhh
Confidence 987
No 23
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.42 E-value=4.6e-13 Score=121.22 Aligned_cols=81 Identities=28% Similarity=0.493 Sum_probs=71.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
.++.+|||||||+|.++..+++.|+ +|+|||+|++|++.|+++....+. .+++++++|+.++++. ++||+|++..+|
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 3567999999999999999998876 899999999999999988766544 3799999999988765 799999999999
Q ss_pred ceec
Q 025428 241 DAIG 244 (253)
Q Consensus 241 ~~i~ 244 (253)
||+.
T Consensus 209 eHv~ 212 (322)
T PLN02396 209 EHVA 212 (322)
T ss_pred HhcC
Confidence 9983
No 24
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.41 E-value=2.1e-12 Score=115.34 Aligned_cols=135 Identities=21% Similarity=0.352 Sum_probs=99.1
Q ss_pred hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhh------hhcceeecCCCcCCccccc-cchHHHHhccC-CCC
Q 025428 95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWT------KSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSS 165 (253)
Q Consensus 95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~------~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~ 165 (253)
.+.|...|++.+.++. .++ .|. .+.|. ......+.++..++++.+. +..+++.+... .++
T Consensus 92 ~~dW~~~w~~~~~p~~----~g~~~~i-------~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g 160 (288)
T TIGR00406 92 SKDWERAWKDNFHPVQ----FGKRFWI-------CPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD 160 (288)
T ss_pred hhhHHHHHHHhCCCEE----EcCeEEE-------ECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCC
Confidence 4678887777665543 333 121 12232 3445678899988887765 55556666544 567
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.|++++..+++. ++.+..++.... .+++||+|+++...+
T Consensus 161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAE 236 (288)
T ss_pred CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHH
Confidence 899999999999999999888779999999999999999999988876 367777764332 357899999986554
No 25
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.39 E-value=1.8e-12 Score=110.88 Aligned_cols=87 Identities=31% Similarity=0.397 Sum_probs=73.3
Q ss_pred hHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCc
Q 025428 154 EPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQF 231 (253)
Q Consensus 154 ~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~f 231 (253)
.+++.+.. ..++.+|||+|||+|.++..+++.+. +|+|+|+|++|++.|++++...+.. ++.+.++|+.+++ ++|
T Consensus 44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~f 120 (219)
T TIGR02021 44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEF 120 (219)
T ss_pred HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCc
Confidence 34444442 34678999999999999999998865 9999999999999999998877653 7999999998875 789
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|++..+++|+
T Consensus 121 D~ii~~~~l~~~ 132 (219)
T TIGR02021 121 DIVVCMDVLIHY 132 (219)
T ss_pred CEEEEhhHHHhC
Confidence 999999888776
No 26
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.39 E-value=1.2e-12 Score=109.31 Aligned_cols=75 Identities=19% Similarity=0.294 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
++.+|||+|||+|.++..++..+ ..+|+|+|+|+.|++.++++++..++.+++++++|+.++...++||+|+++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~ 117 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA 117 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence 57899999999999999988763 3489999999999999999999888878999999999875568999999976
No 27
>PLN02244 tocopherol O-methyltransferase
Probab=99.39 E-value=1.8e-12 Score=118.42 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=72.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
.++.+|||||||+|.++..++++...+|+|+|+|+.|++.++++++..++. +++++++|+.+++++ ++||+|++..++
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~ 196 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG 196 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence 356799999999999999999873339999999999999999999888875 699999999998876 899999999999
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
+|+
T Consensus 197 ~h~ 199 (340)
T PLN02244 197 EHM 199 (340)
T ss_pred hcc
Confidence 987
No 28
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.39 E-value=2.7e-12 Score=107.78 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
+++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++++.+++++++++++|+.++...++||+|+++.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~ 120 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA 120 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence 34789999999999999999875 34599999999999999999999999888999999999876667899999965
No 29
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.37 E-value=1.8e-12 Score=113.41 Aligned_cols=133 Identities=19% Similarity=0.341 Sum_probs=92.6
Q ss_pred hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhhhhcceeecCCCcCCcccc-ccchHHHHhccC-CCCCEEEEE
Q 025428 95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDI 171 (253)
Q Consensus 95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~-~~~~~VLDi 171 (253)
.+.|...|++.+.++. .++ .|.... -..... .......+.++..++++.+ .+..+++.+... .++.+|||+
T Consensus 53 ~~dw~~~w~~~~~p~~----~g~~~~i~p~-~~~~~~-~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDi 126 (250)
T PRK00517 53 DEDWEREWKKYFHPIR----IGDRLWIVPS-WEDPPD-PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDV 126 (250)
T ss_pred chhHHHHHHHHCCCEE----EcCCEEEECC-CcCCCC-CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEe
Confidence 5578888888777655 222 121111 000011 2345667888887777654 356666666653 578899999
Q ss_pred cCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 172 GcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
|||+|.++..+++.|..+|+|+|+|+.|++.|++++..+++. ++.+..+|. +||+|+++...
T Consensus 127 GcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~ 189 (250)
T PRK00517 127 GCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA 189 (250)
T ss_pred CCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence 999999999998888767999999999999999999988873 354444332 79999987543
No 30
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=3.6e-12 Score=111.28 Aligned_cols=80 Identities=16% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
.++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|++++...+.. +++++++|+.+++++ .+|+|+++.
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~ 133 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF 133 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence 46789999999999999988872 2349999999999999999999887765 699999999988654 599999999
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
++|++
T Consensus 134 ~l~~l 138 (247)
T PRK15451 134 TLQFL 138 (247)
T ss_pred HHHhC
Confidence 99997
No 31
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.35 E-value=3.5e-12 Score=109.55 Aligned_cols=80 Identities=23% Similarity=0.199 Sum_probs=65.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------------CCCceEEEEeccCCCcCC--
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE-- 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------------g~~~i~~~~~D~~~~~~~-- 228 (253)
.++.+|||+|||.|..+..|+.+|+ +|+|||+|+.+|+.+.+..... .-.+|++.++|+.++...
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~ 114 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL 114 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence 3567999999999999999999988 8999999999999875321110 113689999999998643
Q ss_pred CCccEEEEcccccee
Q 025428 229 RQFQLVMDKGTLDAI 243 (253)
Q Consensus 229 ~~fD~Vi~~~~l~~i 243 (253)
..||+|+...+++|+
T Consensus 115 ~~fd~v~D~~~~~~l 129 (218)
T PRK13255 115 ADVDAVYDRAALIAL 129 (218)
T ss_pred CCeeEEEehHhHhhC
Confidence 689999999999987
No 32
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=3.6e-12 Score=112.56 Aligned_cols=81 Identities=23% Similarity=0.409 Sum_probs=74.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
+.++.+|||||||.|.+++++|++ |. +|+|+++|+++.+.++++++..|+. +++++..|..++. +.||-|++.+.
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgm 146 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGM 146 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhh
Confidence 378999999999999999999999 55 9999999999999999999999998 7999999999874 45999999999
Q ss_pred cceecc
Q 025428 240 LDAIGL 245 (253)
Q Consensus 240 l~~i~~ 245 (253)
++|++.
T Consensus 147 fEhvg~ 152 (283)
T COG2230 147 FEHVGK 152 (283)
T ss_pred HHHhCc
Confidence 999865
No 33
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.35 E-value=2.4e-12 Score=112.75 Aligned_cols=75 Identities=21% Similarity=0.252 Sum_probs=65.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++ +++++++|+.+++..++||+|+++.++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence 467899999999999999999872 23899999999999999763 5789999998875558999999999999
Q ss_pred eec
Q 025428 242 AIG 244 (253)
Q Consensus 242 ~i~ 244 (253)
|+.
T Consensus 101 ~~~ 103 (255)
T PRK14103 101 WVP 103 (255)
T ss_pred hCC
Confidence 973
No 34
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.35 E-value=4.6e-12 Score=114.86 Aligned_cols=81 Identities=22% Similarity=0.258 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..++..|...|+|+|+|+.|+..++......+. .++.++.+|+.+++++++||+|++.+++|
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~ 200 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY 200 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence 46789999999999999999999877899999999999876654433322 37999999999988778999999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 201 H~ 202 (322)
T PRK15068 201 HR 202 (322)
T ss_pred cc
Confidence 86
No 35
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.35 E-value=5.2e-12 Score=114.05 Aligned_cols=77 Identities=22% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEeccCCCcCCCCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-----~~~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++++..+ ..+++|.++|+.++ +++||+|+|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence 567999999999999999999976 89999999999999999987642 23688999998654 57899999999
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
+++|+
T Consensus 221 vL~H~ 225 (315)
T PLN02585 221 VLIHY 225 (315)
T ss_pred EEEec
Confidence 99885
No 36
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.35 E-value=2.3e-12 Score=110.46 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=67.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. .++.+.++|+.. ..++||+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence 4667999999999999999999876 799999999999999999887776 469999999533 247899999999997
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 139 ~~ 140 (230)
T PRK07580 139 HY 140 (230)
T ss_pred cC
Confidence 75
No 37
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.30 E-value=9.9e-12 Score=108.75 Aligned_cols=76 Identities=21% Similarity=0.300 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++. .++.++.+|+.++..+++||+|+++.++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence 46689999999999999999987 3459999999999999999864 46899999998876568999999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
++
T Consensus 105 ~~ 106 (258)
T PRK01683 105 WL 106 (258)
T ss_pred hC
Confidence 87
No 38
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.30 E-value=2e-11 Score=104.37 Aligned_cols=82 Identities=16% Similarity=0.148 Sum_probs=70.4
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
..++.+|||||||+|.++..+++... .+|+++|+++++++.|+++++..++.+++++++|..+.... .+||+|++..
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 154 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA 154 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence 35788999999999999999998832 25999999999999999999999988899999999876433 7899999887
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
...++
T Consensus 155 ~~~~~ 159 (215)
T TIGR00080 155 AGPKI 159 (215)
T ss_pred Ccccc
Confidence 66554
No 39
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.30 E-value=2.4e-12 Score=108.56 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=75.5
Q ss_pred hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ 232 (253)
Q Consensus 154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD 232 (253)
.|+..+.. ....+|.|+|||+|..+..|+++ +...++|+|-|++||+.|++++ .+++|..+|+.++..+..+|
T Consensus 21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~d 94 (257)
T COG4106 21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTD 94 (257)
T ss_pred HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccc
Confidence 34433333 35679999999999999999998 5559999999999999998763 58999999999998889999
Q ss_pred EEEEccccceeccCCC
Q 025428 233 LVMDKGTLDAIGLHPD 248 (253)
Q Consensus 233 ~Vi~~~~l~~i~~~pd 248 (253)
++++|.+||++.-|++
T Consensus 95 llfaNAvlqWlpdH~~ 110 (257)
T COG4106 95 LLFANAVLQWLPDHPE 110 (257)
T ss_pred hhhhhhhhhhccccHH
Confidence 9999999999977764
No 40
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.29 E-value=5.4e-12 Score=108.40 Aligned_cols=98 Identities=30% Similarity=0.330 Sum_probs=73.6
Q ss_pred cccchHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-------c-----CCCce
Q 025428 150 DLKSEPVEENDK--YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------D-----GFSCI 215 (253)
Q Consensus 150 ~~~~~l~~~l~~--~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-------~-----g~~~i 215 (253)
.+.+.|.+.+.. ..++.+||..|||.|.-+..|+.+|+ +|+|+|+|+.+|+.+.+.... . ...+|
T Consensus 21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i 99 (218)
T PF05724_consen 21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI 99 (218)
T ss_dssp TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence 334445554444 34667999999999999999999998 999999999999998554321 0 11258
Q ss_pred EEEEeccCCCcCC--CCccEEEEccccceeccCCCCC
Q 025428 216 KFLVDDVLDTKLE--RQFQLVMDKGTLDAIGLHPDGP 250 (253)
Q Consensus 216 ~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i~~~pd~~ 250 (253)
+++++|+.+++.. ++||+|+....|++| +|+.|
T Consensus 100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al--pp~~R 134 (218)
T PF05724_consen 100 TIYCGDFFELPPEDVGKFDLIYDRTFLCAL--PPEMR 134 (218)
T ss_dssp EEEES-TTTGGGSCHHSEEEEEECSSTTTS---GGGH
T ss_pred EEEEcccccCChhhcCCceEEEEecccccC--CHHHH
Confidence 9999999998764 689999999999998 56543
No 41
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.29 E-value=1.7e-11 Score=108.24 Aligned_cols=82 Identities=17% Similarity=0.379 Sum_probs=71.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
+.++.+|||+|||+|..+..+++. +. .+|+|+|+|+.|++.|+++....++.+++++++|+.+++++ ++||+|+++.
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 357889999999999988877765 43 27999999999999999999888888899999999998865 7899999999
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
++|++
T Consensus 155 v~~~~ 159 (272)
T PRK11873 155 VINLS 159 (272)
T ss_pred cccCC
Confidence 88875
No 42
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.29 E-value=2.6e-11 Score=100.67 Aligned_cols=78 Identities=19% Similarity=0.296 Sum_probs=69.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~ 242 (253)
.++.+|||+|||+|.++..++..+. +|+++|+|+.|++.++++++.++. +++++++|+.+.. .++||+|+++..+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence 4567899999999999999999876 899999999999999999988876 7899999987754 468999999998876
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
+
T Consensus 95 ~ 95 (179)
T TIGR00537 95 L 95 (179)
T ss_pred C
Confidence 6
No 43
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.29 E-value=3.3e-11 Score=103.04 Aligned_cols=82 Identities=17% Similarity=0.232 Sum_probs=70.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
..++.+|||||||+|.++..+++. +. .+|+++|+++++++.++++++..++.+++++++|......+ ++||+|++..
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~ 153 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA 153 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence 357889999999999999999887 32 48999999999999999999999988899999999876544 7899999987
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
.++.+
T Consensus 154 ~~~~~ 158 (212)
T PRK13942 154 AGPDI 158 (212)
T ss_pred Ccccc
Confidence 66554
No 44
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=1.7e-11 Score=105.79 Aligned_cols=78 Identities=24% Similarity=0.365 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~----g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~ 236 (253)
.++.+|||+|||+|.++..+++. |. .+|+|+|+|++|++.|+++.... ++++.+++...++.+ ++||+|++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence 45679999999999999888753 32 38999999999999999876433 456777766665544 79999999
Q ss_pred cccccee
Q 025428 237 KGTLDAI 243 (253)
Q Consensus 237 ~~~l~~i 243 (253)
+.+|||+
T Consensus 136 ~~~lhh~ 142 (232)
T PRK06202 136 NHFLHHL 142 (232)
T ss_pred CCeeecC
Confidence 9999998
No 45
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.28 E-value=1.4e-11 Score=107.40 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=64.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA 242 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~ 242 (253)
+..+|||+|||+|.++..++..+. +|+++|+|+.|++.++++.. .+.++++|+..++++ ++||+|+++.++|+
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 467999999999999999998865 99999999999999998742 357899999998875 78999999999987
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
+
T Consensus 116 ~ 116 (251)
T PRK10258 116 C 116 (251)
T ss_pred c
Confidence 5
No 46
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.28 E-value=1.9e-11 Score=107.85 Aligned_cols=79 Identities=23% Similarity=0.358 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++... ..++.++++|+.+.+++ ++||+|++..+++
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~ 128 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAIL 128 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence 57789999999999999999876223999999999999999998654 24799999999988775 7999999988887
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 129 h~ 130 (263)
T PTZ00098 129 HL 130 (263)
T ss_pred hC
Confidence 76
No 47
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=3.4e-11 Score=99.88 Aligned_cols=84 Identities=29% Similarity=0.417 Sum_probs=72.5
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
...+.+|+|+|||||.+++..+-.|+..|+|+|+++++++.+++|+.+ +..++.|+++|+.++ ...||.|++|..|-
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--~~~~dtvimNPPFG 119 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--RGKFDTVIMNPPFG 119 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--CCccceEEECCCCc
Confidence 357789999999999999999999999999999999999999999988 334899999999885 46789999988876
Q ss_pred eeccCCC
Q 025428 242 AIGLHPD 248 (253)
Q Consensus 242 ~i~~~pd 248 (253)
.-.-|+|
T Consensus 120 ~~~rhaD 126 (198)
T COG2263 120 SQRRHAD 126 (198)
T ss_pred cccccCC
Confidence 6544444
No 48
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.27 E-value=2.2e-11 Score=105.63 Aligned_cols=80 Identities=15% Similarity=0.214 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
.++.+|||+|||+|.++..++++ +..+++|+|+|+.|++.|++++...+.. +++++++|+.+++++ .+|+|+++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 35679999999999999999875 2348999999999999999998765543 699999999988765 589999999
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
++||+
T Consensus 131 ~l~~~ 135 (239)
T TIGR00740 131 TLQFL 135 (239)
T ss_pred chhhC
Confidence 99987
No 49
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.27 E-value=4.3e-11 Score=101.72 Aligned_cols=81 Identities=15% Similarity=0.198 Sum_probs=69.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
.++.+|||+|||+|.++..+++. + ..+|+++|++++|++.|+++++..++. +++++++|+.+.... ++||+|++..
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~ 150 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA 150 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence 46789999999999999999876 2 348999999999999999999988876 599999999875433 7899999998
Q ss_pred cccee
Q 025428 239 TLDAI 243 (253)
Q Consensus 239 ~l~~i 243 (253)
+++++
T Consensus 151 ~~~~~ 155 (205)
T PRK13944 151 AASTI 155 (205)
T ss_pred Ccchh
Confidence 87765
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.27 E-value=3.3e-11 Score=100.67 Aligned_cols=78 Identities=19% Similarity=0.236 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++++..++.+++++++|+.. .++++||+|++.+..+
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~~~ 108 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGSGG 108 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCCcc
Confidence 467899999999999999999873 34899999999999999999988888789999999853 3457899999876543
No 51
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.27 E-value=2.4e-11 Score=115.49 Aligned_cols=89 Identities=24% Similarity=0.269 Sum_probs=72.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF 231 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f 231 (253)
..+++.+. ..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .+++|+++|+.+.+++ ++|
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCE
Confidence 34444443 35677999999999999999998733389999999999999998875333 2699999999988765 789
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|++..+++|+
T Consensus 334 D~I~s~~~l~h~ 345 (475)
T PLN02336 334 DVIYSRDTILHI 345 (475)
T ss_pred EEEEECCccccc
Confidence 999999999987
No 52
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.27 E-value=2.1e-11 Score=108.15 Aligned_cols=79 Identities=24% Similarity=0.376 Sum_probs=64.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
.++.+|||||||.|.++..++++ |+ +|+|+.+|++..+.++++++..|+. ++++.++|..+++ .+||.|++.+++
T Consensus 61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~ 137 (273)
T PF02353_consen 61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMF 137 (273)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEG
T ss_pred CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEech
Confidence 68899999999999999999999 77 9999999999999999999999987 4999999998764 499999999999
Q ss_pred ceec
Q 025428 241 DAIG 244 (253)
Q Consensus 241 ~~i~ 244 (253)
+|++
T Consensus 138 Ehvg 141 (273)
T PF02353_consen 138 EHVG 141 (273)
T ss_dssp GGTC
T ss_pred hhcC
Confidence 9984
No 53
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.26 E-value=2.1e-11 Score=110.04 Aligned_cols=81 Identities=17% Similarity=0.168 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++++|||||||+|.++..++..|+..|+|+|.|+.|+..++...+..+ ..++.+..+++.+++...+||+|++.++|+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~ 199 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY 199 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence 5678999999999999999999887789999999999987654322211 236889999998887667899999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 200 H~ 201 (314)
T TIGR00452 200 HR 201 (314)
T ss_pred cc
Confidence 97
No 54
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.26 E-value=4.3e-12 Score=109.89 Aligned_cols=77 Identities=27% Similarity=0.471 Sum_probs=64.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-----C-ceEEEEeccCCCcCCCCccEEEEc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----S-CIKFLVDDVLDTKLERQFQLVMDK 237 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-----~-~i~~~~~D~~~~~~~~~fD~Vi~~ 237 (253)
-+.+|||+|||+|.+++.|++.|+ .|+|||+++.||+.|++.....-. . ++++.+.+++.. .+.||+|+|.
T Consensus 89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcs 165 (282)
T KOG1270|consen 89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCS 165 (282)
T ss_pred CCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeH
Confidence 457899999999999999999986 999999999999999998433221 1 366777777765 3569999999
Q ss_pred ccccee
Q 025428 238 GTLDAI 243 (253)
Q Consensus 238 ~~l~~i 243 (253)
.+++|+
T Consensus 166 evleHV 171 (282)
T KOG1270|consen 166 EVLEHV 171 (282)
T ss_pred HHHHHH
Confidence 999998
No 55
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.25 E-value=1.8e-11 Score=102.45 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=62.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~ 242 (253)
..-.++||+|||+|.++..|+.+ +.+++++|+|+.+|+.|++++.. .++|+|+++|+.+..++++||+|++..++++
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence 34568999999999999999999 67999999999999999999864 4699999999999877799999999999999
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
+
T Consensus 119 L 119 (201)
T PF05401_consen 119 L 119 (201)
T ss_dssp S
T ss_pred C
Confidence 8
No 56
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.25 E-value=2.5e-11 Score=103.93 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=69.1
Q ss_pred CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i 243 (253)
++|||||||+|.++..+++.. ..+|+|+|+|+++++.+++++...|+. +++++++|+...+++++||+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 379999999999999999873 348999999999999999999888775 599999999777667899999999999987
No 57
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.25 E-value=4e-11 Score=110.66 Aligned_cols=93 Identities=15% Similarity=0.122 Sum_probs=75.3
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCC
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDT 225 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~ 225 (253)
.-++.+++.+... ...+|||+|||+|.++..+++++ ..+|+++|+|+.|++.|+++++.++. .+++++.+|+...
T Consensus 215 ~GtrllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 215 IGARFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred hHHHHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 3356666666543 34699999999999999999873 34999999999999999999987764 3689999998765
Q ss_pred cCCCCccEEEEcccccee
Q 025428 226 KLERQFQLVMDKGTLDAI 243 (253)
Q Consensus 226 ~~~~~fD~Vi~~~~l~~i 243 (253)
..+++||+|+++..+|..
T Consensus 294 ~~~~~fDlIlsNPPfh~~ 311 (378)
T PRK15001 294 VEPFRFNAVLCNPPFHQQ 311 (378)
T ss_pred CCCCCEEEEEECcCcccC
Confidence 334689999999998865
No 58
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.25 E-value=6.4e-11 Score=91.24 Aligned_cols=79 Identities=20% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~ 239 (253)
.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.+++++.+|+.... ..++||+|++.+.
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 35679999999999999999987 33589999999999999999998888878999999987532 2378999998765
Q ss_pred cc
Q 025428 240 LD 241 (253)
Q Consensus 240 l~ 241 (253)
.+
T Consensus 98 ~~ 99 (124)
T TIGR02469 98 GG 99 (124)
T ss_pred ch
Confidence 43
No 59
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.24 E-value=2.5e-11 Score=105.38 Aligned_cols=93 Identities=20% Similarity=0.255 Sum_probs=78.3
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC--
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-- 228 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-- 228 (253)
..|+..+.......+|||+|||+|.+++.++.+ ...+++|||++++|.+.|+++.+.+++. +|+++++|+.++...
T Consensus 33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~ 112 (248)
T COG4123 33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV 112 (248)
T ss_pred HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence 344555555556889999999999999999998 5469999999999999999999999887 699999999998642
Q ss_pred -CCccEEEEccccceecc
Q 025428 229 -RQFQLVMDKGTLDAIGL 245 (253)
Q Consensus 229 -~~fD~Vi~~~~l~~i~~ 245 (253)
.+||+|+||..+....-
T Consensus 113 ~~~fD~Ii~NPPyf~~~~ 130 (248)
T COG4123 113 FASFDLIICNPPYFKQGS 130 (248)
T ss_pred ccccCEEEeCCCCCCCcc
Confidence 57999999998876543
No 60
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.24 E-value=2.9e-11 Score=104.19 Aligned_cols=83 Identities=20% Similarity=0.157 Sum_probs=68.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH------------hcCCCceEEEEeccCCCcC----
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVDDVLDTKL---- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~------------~~g~~~i~~~~~D~~~~~~---- 227 (253)
++.+||..|||.|.-+..|+.+|+ +|+|+|+|+.+|+.+.+... ...-.+|+++++|+.+++.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~ 121 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN 121 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence 457999999999999999999999 89999999999999866321 0111379999999999864
Q ss_pred CCCccEEEEccccceeccCCCC
Q 025428 228 ERQFQLVMDKGTLDAIGLHPDG 249 (253)
Q Consensus 228 ~~~fD~Vi~~~~l~~i~~~pd~ 249 (253)
.++||+|+...+|+++ +|+.
T Consensus 122 ~~~fD~VyDra~~~Al--pp~~ 141 (226)
T PRK13256 122 LPVFDIWYDRGAYIAL--PNDL 141 (226)
T ss_pred cCCcCeeeeehhHhcC--CHHH
Confidence 1689999999999998 5543
No 61
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.23 E-value=6.9e-11 Score=105.41 Aligned_cols=76 Identities=21% Similarity=0.354 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
+..+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+...+++||+|+++..
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC
Confidence 45799999999999999999873 348999999999999999999999885 69999999876433468999999753
No 62
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.23 E-value=4.8e-11 Score=106.22 Aligned_cols=73 Identities=32% Similarity=0.586 Sum_probs=63.7
Q ss_pred EEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
+|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|++.+|+.++.++++|+.+. ..++||+|++|...
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~~~fDlIVsNPPY 186 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LRGKFDLIVSNPPY 186 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cCCceeEEEeCCCC
Confidence 799999999999999999843 39999999999999999999999986777888887764 34599999998754
No 63
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=5.5e-11 Score=102.20 Aligned_cols=78 Identities=26% Similarity=0.235 Sum_probs=67.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||+|||+|.++..+++.+..+++++|+|+.+++.++++++.+++ ++.++++|+.+....++||+|+++..+.
T Consensus 35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCC
Confidence 45689999999999999999988766999999999999999999988876 6899999998753347899999986543
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.23 E-value=3.8e-11 Score=101.85 Aligned_cols=77 Identities=18% Similarity=0.255 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecc-CCCc--C-CCCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~-~~~~--~-~~~fD~Vi~~~ 238 (253)
.+.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+ ..++ + +++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 5679999999999999999887 3348999999999999999999888888899999999 6554 4 47899999865
Q ss_pred cc
Q 025428 239 TL 240 (253)
Q Consensus 239 ~l 240 (253)
..
T Consensus 120 ~~ 121 (202)
T PRK00121 120 PD 121 (202)
T ss_pred CC
Confidence 43
No 65
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.22 E-value=3.5e-11 Score=108.78 Aligned_cols=100 Identities=20% Similarity=0.235 Sum_probs=77.4
Q ss_pred eeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428 137 ISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213 (253)
Q Consensus 137 ~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~ 213 (253)
+.+.+....+....+...+.+.+... .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++.+++.
T Consensus 143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~ 221 (315)
T PRK03522 143 LFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLT 221 (315)
T ss_pred EEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence 44555555554444444444432221 356899999999999999999986 59999999999999999999999998
Q ss_pred ceEEEEeccCCCcC--CCCccEEEEc
Q 025428 214 CIKFLVDDVLDTKL--ERQFQLVMDK 237 (253)
Q Consensus 214 ~i~~~~~D~~~~~~--~~~fD~Vi~~ 237 (253)
+++|+++|+.++.. .++||+|+++
T Consensus 222 ~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 222 NVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred ceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 89999999987642 3579999986
No 66
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.22 E-value=1e-10 Score=99.62 Aligned_cols=81 Identities=17% Similarity=0.126 Sum_probs=70.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
..++.+|||+|||+|.++..+++.+ .+++++|+++++++.+++++++.++.+++++++|..+.... ++||+|++...+
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~ 154 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA 154 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence 3577899999999999999888884 48999999999999999999998988899999998765333 789999998776
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
+++
T Consensus 155 ~~~ 157 (212)
T PRK00312 155 PEI 157 (212)
T ss_pred hhh
Confidence 654
No 67
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.22 E-value=9.2e-11 Score=108.93 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=75.5
Q ss_pred ceeecCCC-cCCccccccchHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428 136 CISISQGH-MLNHVEDLKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF 212 (253)
Q Consensus 136 ~~~i~~~~-~~~~~~~~~~~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~ 212 (253)
.+.+.++. +|. ..+..+++.+. ...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++|++.++.
T Consensus 224 ~f~V~p~vLIPR---peTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~ 300 (423)
T PRK14966 224 RFAVNPNVLIPR---PETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA 300 (423)
T ss_pred EEEeCCCccCCC---ccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 34455554 333 22333444433 3345679999999999999999875 445899999999999999999988876
Q ss_pred CceEEEEeccCCCcC--CCCccEEEEcccc
Q 025428 213 SCIKFLVDDVLDTKL--ERQFQLVMDKGTL 240 (253)
Q Consensus 213 ~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l 240 (253)
+++++++|+.+... .++||+|++|...
T Consensus 301 -rV~fi~gDl~e~~l~~~~~FDLIVSNPPY 329 (423)
T PRK14966 301 -RVEFAHGSWFDTDMPSEGKWDIIVSNPPY 329 (423)
T ss_pred -cEEEEEcchhccccccCCCccEEEECCCC
Confidence 89999999976533 3689999998753
No 68
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.21 E-value=5.6e-11 Score=100.72 Aligned_cols=88 Identities=10% Similarity=-0.041 Sum_probs=71.7
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCC
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQ 230 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~ 230 (253)
..++..+.....+.+|||+|||+|.+++.++.+++.+|+++|+++.+++.+++|++.+++.+++++++|+.+.. ..++
T Consensus 42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~ 121 (199)
T PRK10909 42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP 121 (199)
T ss_pred HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence 34455554434677999999999999997666667799999999999999999999999888999999997643 1357
Q ss_pred ccEEEEcccc
Q 025428 231 FQLVMDKGTL 240 (253)
Q Consensus 231 fD~Vi~~~~l 240 (253)
||+|+++..+
T Consensus 122 fDlV~~DPPy 131 (199)
T PRK10909 122 HNVVFVDPPF 131 (199)
T ss_pred ceEEEECCCC
Confidence 9999997764
No 69
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.21 E-value=3.5e-11 Score=92.34 Aligned_cols=79 Identities=29% Similarity=0.485 Sum_probs=67.4
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--C-CCCccEEEEcccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L-ERQFQLVMDKGTL 240 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~-~~~fD~Vi~~~~l 240 (253)
+.+|||+|||+|.++..+++.+..+++|+|+++..++.++.++...++. +++++++|+.+.. + .++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999999997459999999999999999999998874 7999999998876 3 4899999999888
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
...
T Consensus 81 ~~~ 83 (117)
T PF13659_consen 81 GPR 83 (117)
T ss_dssp TSB
T ss_pred ccc
Confidence 643
No 70
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.20 E-value=6.8e-11 Score=99.41 Aligned_cols=74 Identities=23% Similarity=0.355 Sum_probs=61.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-Cc-C-CCCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-L-ERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-~~-~-~~~fD~Vi~~~~ 239 (253)
.++.+|||+|||+|.++..+++.....++|+|+|++|++.++++ +++++++|+.+ ++ + +++||+|+++.+
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 45679999999999999999876444899999999999988652 46889999876 32 4 378999999999
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
+||+
T Consensus 85 l~~~ 88 (194)
T TIGR02081 85 LQAT 88 (194)
T ss_pred hHcC
Confidence 9987
No 71
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.20 E-value=1.8e-12 Score=96.94 Aligned_cols=75 Identities=33% Similarity=0.408 Sum_probs=49.8
Q ss_pred EEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC---cCCCCccEEEEcccccee
Q 025428 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLDAI 243 (253)
Q Consensus 169 LDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~---~~~~~fD~Vi~~~~l~~i 243 (253)
||||||+|.++..++.. ...+++|+|+|+.|++.+++++...+..+......+..+. ...++||+|++..+|||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 79999999999999988 3349999999999999999998877654444544444443 223699999999999998
No 72
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=1e-10 Score=103.76 Aligned_cols=92 Identities=23% Similarity=0.284 Sum_probs=77.4
Q ss_pred ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227 (253)
Q Consensus 149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~ 227 (253)
+.-++.|++.+..... .+|||+|||.|.++..+++.. ..+++.+|+|..+|+.+|+|++.|++++..+...|..+...
T Consensus 144 D~GS~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~ 222 (300)
T COG2813 144 DKGSRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE 222 (300)
T ss_pred ChHHHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc
Confidence 4447777777777544 499999999999999999993 45999999999999999999999999877778888876544
Q ss_pred CCCccEEEEccccce
Q 025428 228 ERQFQLVMDKGTLDA 242 (253)
Q Consensus 228 ~~~fD~Vi~~~~l~~ 242 (253)
++||+|++|..||.
T Consensus 223 -~kfd~IisNPPfh~ 236 (300)
T COG2813 223 -GKFDLIISNPPFHA 236 (300)
T ss_pred -ccccEEEeCCCccC
Confidence 49999999999884
No 73
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.18 E-value=2e-10 Score=102.30 Aligned_cols=74 Identities=20% Similarity=0.439 Sum_probs=64.0
Q ss_pred CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|++.+++.+ ++++++|+.+....++||+|+++..
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP 191 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP 191 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC
Confidence 689999999999999999873 2489999999999999999999988864 9999999987432358999999753
No 74
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.18 E-value=8.5e-11 Score=100.62 Aligned_cols=76 Identities=28% Similarity=0.384 Sum_probs=66.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
...+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. .++.++++|+.+.+++ ++||+|+++.++|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 447899999999999999998853 378999999999999998754 3789999999998764 8899999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|+
T Consensus 110 ~~ 111 (240)
T TIGR02072 110 WC 111 (240)
T ss_pred hc
Confidence 87
No 75
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.17 E-value=2.8e-10 Score=103.98 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=78.2
Q ss_pred eecCCCcCCcc-ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCce
Q 025428 138 SISQGHMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCI 215 (253)
Q Consensus 138 ~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i 215 (253)
...++.+.... +..+..+++.+... ...+|||+|||+|.++..+++++ ..+|+++|+|+.|++.++++++.+++ ..
T Consensus 170 ~~~pgvFs~~~lD~gt~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~ 247 (342)
T PRK09489 170 KTLPGVFSRDGLDVGSQLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EG 247 (342)
T ss_pred EeCCCCCCCCCCCHHHHHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CC
Confidence 34444433322 23356666666553 34589999999999999999883 34899999999999999999999887 46
Q ss_pred EEEEeccCCCcCCCCccEEEEccccce
Q 025428 216 KFLVDDVLDTKLERQFQLVMDKGTLDA 242 (253)
Q Consensus 216 ~~~~~D~~~~~~~~~fD~Vi~~~~l~~ 242 (253)
+++.+|+... .+++||+|+++..+|.
T Consensus 248 ~~~~~D~~~~-~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 248 EVFASNVFSD-IKGRFDMIISNPPFHD 273 (342)
T ss_pred EEEEcccccc-cCCCccEEEECCCccC
Confidence 7888888763 4678999999999986
No 76
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.16 E-value=1.8e-10 Score=103.80 Aligned_cols=73 Identities=22% Similarity=0.382 Sum_probs=63.7
Q ss_pred CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
.+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++++.+++. +++++++|+.+...+++||+|+++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP 209 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNP 209 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence 68999999999999999987 3348999999999999999999998875 5999999987643346899999985
No 77
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.16 E-value=1.2e-10 Score=110.06 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=78.0
Q ss_pred ceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428 136 CISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212 (253)
Q Consensus 136 ~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~ 212 (253)
.+.+.++.+..........+.+.+.. ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++.+++
T Consensus 266 ~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~ 344 (443)
T PRK13168 266 RLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL 344 (443)
T ss_pred EEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 44555555555444444444443332 2466799999999999999999985 5999999999999999999999998
Q ss_pred CceEEEEeccCCCc----C-CCCccEEEEcc
Q 025428 213 SCIKFLVDDVLDTK----L-ERQFQLVMDKG 238 (253)
Q Consensus 213 ~~i~~~~~D~~~~~----~-~~~fD~Vi~~~ 238 (253)
.+++++++|+.+.. + +++||+|+++.
T Consensus 345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP 375 (443)
T PRK13168 345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDP 375 (443)
T ss_pred CceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence 88999999997532 2 36799999863
No 78
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.16 E-value=2.3e-10 Score=94.18 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
.++.+|||+|||+|.++..+++++ .+++++|+++.|++.+++++.. ..+++++++|+.+++++ .+||.|+++-.+|
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~ 88 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN 88 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence 456799999999999999999994 5999999999999999998754 34799999999998766 4699999987665
No 79
>PRK06922 hypothetical protein; Provisional
Probab=99.15 E-value=1.4e-10 Score=112.39 Aligned_cols=82 Identities=18% Similarity=0.431 Sum_probs=69.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEE
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMD 236 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~ 236 (253)
...++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++....+. ++.++++|+.+++ ++ ++||+|++
T Consensus 415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs 493 (677)
T PRK06922 415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY 493 (677)
T ss_pred hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence 3346789999999999999998876 334999999999999999998766553 7889999998876 43 89999999
Q ss_pred cccccee
Q 025428 237 KGTLDAI 243 (253)
Q Consensus 237 ~~~l~~i 243 (253)
+.++|++
T Consensus 494 n~vLH~L 500 (677)
T PRK06922 494 SSILHEL 500 (677)
T ss_pred chHHHhh
Confidence 9999976
No 80
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.15 E-value=1.4e-10 Score=93.22 Aligned_cols=72 Identities=33% Similarity=0.532 Sum_probs=58.8
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcccc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL 240 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~l 240 (253)
..++.+|||+|||+|.++..+++.|. +++|+|+++.+++. .++.....+...... +++||+|++..+|
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 46788999999999999999999988 99999999999998 234444444444433 4899999999999
Q ss_pred ceec
Q 025428 241 DAIG 244 (253)
Q Consensus 241 ~~i~ 244 (253)
||+.
T Consensus 89 ~~~~ 92 (161)
T PF13489_consen 89 EHLP 92 (161)
T ss_dssp GGSS
T ss_pred hhcc
Confidence 9984
No 81
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.15 E-value=1.4e-10 Score=105.56 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=67.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
.++.+|||||||+|.++..+++. +..+++++|+|++|++.|+++.. ..+++++.+|+.+++++ ++||+|+++.++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 35679999999999999988876 34589999999999999998754 24688999999998875 789999999999
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
|++
T Consensus 189 ~~~ 191 (340)
T PLN02490 189 EYW 191 (340)
T ss_pred hhC
Confidence 875
No 82
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.14 E-value=2.9e-10 Score=103.41 Aligned_cols=79 Identities=18% Similarity=0.114 Sum_probs=70.1
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
...++.+|||+|||||.++..++..|. +++|+|+++.|++.++.|++..|+.++.++++|+.++++. ++||+|+++..
T Consensus 179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP 257 (329)
T ss_pred CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence 346778999999999999999888765 9999999999999999999999988899999999998864 79999999755
Q ss_pred c
Q 025428 240 L 240 (253)
Q Consensus 240 l 240 (253)
+
T Consensus 258 y 258 (329)
T TIGR01177 258 Y 258 (329)
T ss_pred C
Confidence 4
No 83
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.14 E-value=1.1e-10 Score=97.42 Aligned_cols=74 Identities=26% Similarity=0.356 Sum_probs=63.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~~ 239 (253)
.++.+|||+|||.|.++..|.+....+++|+|++++.+..|.++ .+.++++|+.+-. ++ ++||.||++++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 47899999999999999999986344899999999999988875 4679999997743 34 89999999999
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
|.++
T Consensus 85 LQ~~ 88 (193)
T PF07021_consen 85 LQAV 88 (193)
T ss_pred HHhH
Confidence 9987
No 84
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.14 E-value=3e-10 Score=98.52 Aligned_cols=78 Identities=29% Similarity=0.445 Sum_probs=67.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...++.+++++++|+.+....++||+|+++..+.
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI 165 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence 4469999999999999999987 33489999999999999999999888878999999998743358899999976654
No 85
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.12 E-value=1.8e-10 Score=96.98 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=65.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CC-CCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~-~~fD~Vi~~~ 238 (253)
...+|||||||+|.++..++.. +..+++|+|+++.|++.|++++...++.|++++++|+.+++ ++ +++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 4569999999999999999987 33489999999999999999999888889999999998753 33 5899998865
Q ss_pred c
Q 025428 239 T 239 (253)
Q Consensus 239 ~ 239 (253)
.
T Consensus 96 p 96 (194)
T TIGR00091 96 P 96 (194)
T ss_pred C
Confidence 4
No 86
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.12 E-value=3.4e-10 Score=96.63 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=70.9
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE- 228 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~- 228 (253)
...+++.+. ..++.+|||||||+|+.+..++.. |.. .|+++|+.+..++.|+++++..++.|+.++++|.......
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 444555554 478899999999999999999988 432 6999999999999999999999998999999998765433
Q ss_pred CCccEEEEcccccee
Q 025428 229 RQFQLVMDKGTLDAI 243 (253)
Q Consensus 229 ~~fD~Vi~~~~l~~i 243 (253)
.+||.|++......+
T Consensus 140 apfD~I~v~~a~~~i 154 (209)
T PF01135_consen 140 APFDRIIVTAAVPEI 154 (209)
T ss_dssp -SEEEEEESSBBSS-
T ss_pred CCcCEEEEeeccchH
Confidence 789999998776544
No 87
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.11 E-value=4.8e-10 Score=96.09 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=69.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
++.+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++..+++. ++.++.+|+.+.+++ ++||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 56799999999999999999885 369999999999999999998765543 689999999987764 78999999888
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
+|++
T Consensus 131 l~~~ 134 (239)
T PRK00216 131 LRNV 134 (239)
T ss_pred cccC
Confidence 8865
No 88
>PRK14968 putative methyltransferase; Provisional
Probab=99.11 E-value=6.2e-10 Score=92.15 Aligned_cols=78 Identities=21% Similarity=0.344 Sum_probs=67.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
.++.+|||+|||+|.++..++..+ .+++|+|+|+++++.+++++..+++.+ +.++++|+.+...+++||+|+++..+
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY 100 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence 466799999999999999999995 599999999999999999998887754 89999998875444689999987665
Q ss_pred c
Q 025428 241 D 241 (253)
Q Consensus 241 ~ 241 (253)
.
T Consensus 101 ~ 101 (188)
T PRK14968 101 L 101 (188)
T ss_pred C
Confidence 4
No 89
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.11 E-value=4.3e-10 Score=107.83 Aligned_cols=76 Identities=21% Similarity=0.341 Sum_probs=64.6
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
..+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|++.+++. +++++++|+.+....++||+|+++...
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence 468999999999999999876 4459999999999999999999988875 599999998764334689999997643
No 90
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.11 E-value=2.4e-10 Score=105.70 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=83.8
Q ss_pred cceeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428 135 LCISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211 (253)
Q Consensus 135 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g 211 (253)
..+.+.+..+++....+...+...+... .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.++
T Consensus 201 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~ 279 (374)
T TIGR02085 201 VPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG 279 (374)
T ss_pred EEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence 3466777777777777777776654432 356799999999999999999886 599999999999999999999999
Q ss_pred CCceEEEEeccCCCcC--CCCccEEEEccc
Q 025428 212 FSCIKFLVDDVLDTKL--ERQFQLVMDKGT 239 (253)
Q Consensus 212 ~~~i~~~~~D~~~~~~--~~~fD~Vi~~~~ 239 (253)
+.+++|+++|+.+... .++||+|+.+..
T Consensus 280 ~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP 309 (374)
T TIGR02085 280 LDNLSFAALDSAKFATAQMSAPELVLVNPP 309 (374)
T ss_pred CCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence 8889999999976532 256999988643
No 91
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.11 E-value=6.9e-10 Score=92.17 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=69.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
.+.++.+++|||||||.++..++..+ ..+|+++|.++++++..++|+++.|++|++++.+++.+...+ .+||.|+..+
T Consensus 31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 34688899999999999999999553 349999999999999999999999999999999999887544 4799999877
Q ss_pred c
Q 025428 239 T 239 (253)
Q Consensus 239 ~ 239 (253)
.
T Consensus 111 g 111 (187)
T COG2242 111 G 111 (187)
T ss_pred C
Confidence 4
No 92
>PRK08317 hypothetical protein; Provisional
Probab=99.09 E-value=8.4e-10 Score=94.24 Aligned_cols=80 Identities=25% Similarity=0.297 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
.++.+|||+|||+|.++..++... ..+++|+|+|+.+++.++++.... ..+++++++|+...++. ++||+|++..+
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~~~~ 96 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFPDGSFDAVRSDRV 96 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCCCCCceEEEEech
Confidence 467899999999999999999872 348999999999999999883322 24799999999887765 78999999999
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
++++
T Consensus 97 ~~~~ 100 (241)
T PRK08317 97 LQHL 100 (241)
T ss_pred hhcc
Confidence 9886
No 93
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.09 E-value=4.6e-10 Score=94.38 Aligned_cols=97 Identities=11% Similarity=-0.015 Sum_probs=77.4
Q ss_pred cCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecc
Q 025428 144 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV 222 (253)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~ 222 (253)
...+.+.+...+...+.....+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|++.+++. +++++++|+
T Consensus 29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~ 108 (189)
T TIGR00095 29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA 108 (189)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence 3444445566666766655678899999999999999999998889999999999999999999999886 699999999
Q ss_pred CCCc--C--C-CCccEEEEcccc
Q 025428 223 LDTK--L--E-RQFQLVMDKGTL 240 (253)
Q Consensus 223 ~~~~--~--~-~~fD~Vi~~~~l 240 (253)
.+.. . . ..||+|+....+
T Consensus 109 ~~~l~~~~~~~~~~dvv~~DPPy 131 (189)
T TIGR00095 109 LRALKFLAKKPTFDNVIYLDPPF 131 (189)
T ss_pred HHHHHHhhccCCCceEEEECcCC
Confidence 6531 1 1 247888876544
No 94
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=9e-10 Score=93.23 Aligned_cols=80 Identities=16% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
.++.+||+||||+|+.+..|++... +|+.+|+.++..+.|++|++..|+.|+.++++|...-..+ .+||.|+......
T Consensus 71 ~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 71 KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAP 149 (209)
T ss_pred CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccC
Confidence 6889999999999999999999944 9999999999999999999999999999999999886555 8999999877665
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
.+
T Consensus 150 ~v 151 (209)
T COG2518 150 EV 151 (209)
T ss_pred CC
Confidence 54
No 95
>PHA03411 putative methyltransferase; Provisional
Probab=99.08 E-value=6.3e-10 Score=98.12 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=65.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA 242 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~ 242 (253)
...+|||+|||+|.++..++.+. ..+|+|+|+|+.|++.++++. .+++++++|+.++...++||+|+++..+++
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~ 138 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK 138 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence 45799999999999999888762 359999999999999999863 368999999998765678999999999998
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
.
T Consensus 139 l 139 (279)
T PHA03411 139 I 139 (279)
T ss_pred c
Confidence 5
No 96
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.07 E-value=5e-10 Score=94.89 Aligned_cols=78 Identities=26% Similarity=0.302 Sum_probs=63.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-CcCC-CCccEEEEccccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-~~~~-~~fD~Vi~~~~l~ 241 (253)
...-|||||||+|..+..+...|. ..+|+|||+.||++|.++-- .-.++.+|+-+ +|+. ++||.||+...+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQ 123 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQ 123 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeee
Confidence 467899999999999999999986 89999999999999997421 13578888865 4554 9999999998887
Q ss_pred eeccCCC
Q 025428 242 AIGLHPD 248 (253)
Q Consensus 242 ~i~~~pd 248 (253)
++ |+++
T Consensus 124 WL-cnA~ 129 (270)
T KOG1541|consen 124 WL-CNAD 129 (270)
T ss_pred ee-cccC
Confidence 76 5443
No 97
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.07 E-value=6.9e-10 Score=102.94 Aligned_cols=76 Identities=29% Similarity=0.464 Sum_probs=66.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..++++ |. +|+|+|+|++|++.|+++++ ++ ++++..+|..++ +++||+|++..+++
T Consensus 166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~e 239 (383)
T PRK11705 166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchh
Confidence 57789999999999999999987 44 89999999999999999874 33 588889998765 57899999999999
Q ss_pred eec
Q 025428 242 AIG 244 (253)
Q Consensus 242 ~i~ 244 (253)
|+.
T Consensus 240 hvg 242 (383)
T PRK11705 240 HVG 242 (383)
T ss_pred hCC
Confidence 873
No 98
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=9.3e-10 Score=99.72 Aligned_cols=81 Identities=21% Similarity=0.274 Sum_probs=68.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
.++.+|||+|||+|.++..+++... .+|+++|++++|++.|+++++..|+.++.++++|+.+...+ ++||+|++...
T Consensus 79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g 158 (322)
T PRK13943 79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG 158 (322)
T ss_pred CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence 5678999999999999999998732 26999999999999999999999988899999998776544 68999998765
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
++.+
T Consensus 159 ~~~i 162 (322)
T PRK13943 159 VDEV 162 (322)
T ss_pred hHHh
Confidence 5443
No 99
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.06 E-value=1.1e-09 Score=92.27 Aligned_cols=86 Identities=15% Similarity=0.204 Sum_probs=65.9
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-c-
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K- 226 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-~- 226 (253)
++...++..+ ...++.+|||+|||+|.++..+++. +..+|+++|+|+.|++.++++++..++.+++++++|+.+. .
T Consensus 27 ~v~~~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 27 EVRLLLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh
Confidence 3333444444 3357789999999999999999865 2359999999999999999999988887899999998653 1
Q ss_pred CCCCccEEEE
Q 025428 227 LERQFQLVMD 236 (253)
Q Consensus 227 ~~~~fD~Vi~ 236 (253)
....+|.++.
T Consensus 106 ~~~~~d~v~~ 115 (196)
T PRK07402 106 LAPAPDRVCI 115 (196)
T ss_pred CCCCCCEEEE
Confidence 2234566654
No 100
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.06 E-value=1.1e-09 Score=103.51 Aligned_cols=87 Identities=16% Similarity=0.069 Sum_probs=72.0
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER 229 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~ 229 (253)
.+.+...+....++.+|||+|||+|..+..++.. +..+|+++|+|+.|++.+++++++.|+.+++++++|+..++.++
T Consensus 238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~ 317 (445)
T PRK14904 238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE 317 (445)
T ss_pred HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC
Confidence 3344444455567889999999999999888875 23489999999999999999999999988999999998876557
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
+||+|++..
T Consensus 318 ~fD~Vl~D~ 326 (445)
T PRK14904 318 QPDAILLDA 326 (445)
T ss_pred CCCEEEEcC
Confidence 899999753
No 101
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.06 E-value=5.8e-10 Score=103.77 Aligned_cols=82 Identities=20% Similarity=0.297 Sum_probs=69.1
Q ss_pred HhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--C---CCC
Q 025428 158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--L---ERQ 230 (253)
Q Consensus 158 ~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~---~~~ 230 (253)
.+....++.+|||+|||||.+++.++..|+.+|+++|+|+.+++.|++|++.+++. +++++++|+.+.. + .++
T Consensus 214 ~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~ 293 (396)
T PRK15128 214 ATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEK 293 (396)
T ss_pred HHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCC
Confidence 33344567899999999999999887777779999999999999999999999985 6999999998753 1 358
Q ss_pred ccEEEEccc
Q 025428 231 FQLVMDKGT 239 (253)
Q Consensus 231 fD~Vi~~~~ 239 (253)
||+|+++..
T Consensus 294 fDlVilDPP 302 (396)
T PRK15128 294 FDVIVMDPP 302 (396)
T ss_pred CCEEEECCC
Confidence 999998754
No 102
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.05 E-value=5.1e-10 Score=99.43 Aligned_cols=81 Identities=25% Similarity=0.176 Sum_probs=64.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
..+++|||||||+|.++..++..|++.|+|+|.+...+-+.+......|... +.++..-+++++..+.||+|+|.|||-
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY 193 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY 193 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence 5889999999999999999999999999999999987766555444444333 344445666666568999999999998
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
|.
T Consensus 194 Hr 195 (315)
T PF08003_consen 194 HR 195 (315)
T ss_pred cc
Confidence 85
No 103
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.05 E-value=6.9e-10 Score=94.77 Aligned_cols=79 Identities=32% Similarity=0.500 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEccccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLD 241 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~ 241 (253)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...++.++.+.++|+.+.+.. ++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999999998866 7999999999999999998877765689999998877643 7899999999888
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
++
T Consensus 124 ~~ 125 (224)
T TIGR01983 124 HV 125 (224)
T ss_pred hC
Confidence 76
No 104
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.05 E-value=1.3e-09 Score=91.96 Aligned_cols=77 Identities=27% Similarity=0.371 Sum_probs=65.0
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc--CCCCccEEEE
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMD 236 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~--~~~~fD~Vi~ 236 (253)
..++.+|||+|||+|.++..+++. + ..+|+++|+++.|++.++++++.+++ .++.++++|+.+.. ..++||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 357789999999999999998875 3 34899999999999999999998884 57999999997743 2368999998
Q ss_pred cc
Q 025428 237 KG 238 (253)
Q Consensus 237 ~~ 238 (253)
..
T Consensus 118 ~~ 119 (198)
T PRK00377 118 GG 119 (198)
T ss_pred CC
Confidence 54
No 105
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.04 E-value=8.8e-10 Score=104.77 Aligned_cols=77 Identities=25% Similarity=0.440 Sum_probs=64.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC--CcCC-CCccEEEEcccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~--~~~~-~~fD~Vi~~~~l 240 (253)
++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++... ...++.++++|+.. ++++ ++||+|+++.++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 56799999999999999999984 599999999999998765422 23579999999964 4444 789999999999
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
||+
T Consensus 114 ~~l 116 (475)
T PLN02336 114 MYL 116 (475)
T ss_pred HhC
Confidence 987
No 106
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.04 E-value=1.9e-09 Score=95.01 Aligned_cols=78 Identities=27% Similarity=0.397 Sum_probs=64.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
.++.+|||+|||+|.++..++... ..+++|+|+|+.+++.+++++......++.++++|+.+....++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 466799999999999999999883 358999999999999999998733334799999999765334789999997644
No 107
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.03 E-value=1.3e-09 Score=93.93 Aligned_cols=79 Identities=30% Similarity=0.464 Sum_probs=68.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~l 240 (253)
.++.+|||||||+|.++..+++.+. +++++|+++.+++.++++....+. +++++..|+.+.+ ..++||+|++..++
T Consensus 47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4678999999999999999998865 899999999999999999877665 6888888888765 34789999999888
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
+++
T Consensus 125 ~~~ 127 (233)
T PRK05134 125 EHV 127 (233)
T ss_pred hcc
Confidence 876
No 108
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.03 E-value=5.8e-10 Score=110.79 Aligned_cols=83 Identities=18% Similarity=0.146 Sum_probs=70.9
Q ss_pred HHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--CCCCcc
Q 025428 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQ 232 (253)
Q Consensus 157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~~~~fD 232 (253)
..+....++++|||+|||||.+++.++..|+.+|+++|+|+.+++.|++|++.+|+. +++++++|+.+.. ..++||
T Consensus 531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD 610 (702)
T PRK11783 531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD 610 (702)
T ss_pred HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence 444444567899999999999999999988878999999999999999999999985 6999999987643 246899
Q ss_pred EEEEccc
Q 025428 233 LVMDKGT 239 (253)
Q Consensus 233 ~Vi~~~~ 239 (253)
+|+++..
T Consensus 611 lIilDPP 617 (702)
T PRK11783 611 LIFIDPP 617 (702)
T ss_pred EEEECCC
Confidence 9998753
No 109
>PHA03412 putative methyltransferase; Provisional
Probab=99.02 E-value=1.2e-09 Score=94.28 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=64.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
.+.+|||+|||+|.++..++++ ...+|+++|+++.+++.|+++. .++.++++|+....+.++||+||+|..
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP 123 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP 123 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence 4679999999999999999875 2348999999999999999874 358899999987766679999999998
Q ss_pred cceec
Q 025428 240 LDAIG 244 (253)
Q Consensus 240 l~~i~ 244 (253)
++-+.
T Consensus 124 Y~~~~ 128 (241)
T PHA03412 124 FGKIK 128 (241)
T ss_pred CCCcc
Confidence 88653
No 110
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.02 E-value=2.3e-09 Score=94.04 Aligned_cols=74 Identities=16% Similarity=0.188 Sum_probs=61.3
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEcccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTL 240 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l 240 (253)
..+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|++.++ ++++++|+.+... .++||+|+++..+
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 458999999999999999876 33489999999999999999998765 4789999876422 3679999998755
Q ss_pred c
Q 025428 241 D 241 (253)
Q Consensus 241 ~ 241 (253)
.
T Consensus 164 ~ 164 (251)
T TIGR03704 164 V 164 (251)
T ss_pred C
Confidence 3
No 111
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=1.7e-09 Score=102.08 Aligned_cols=87 Identities=17% Similarity=0.171 Sum_probs=72.5
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE 228 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~ 228 (253)
+.++..+....++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++++.|+.+++++++|+.++. ++
T Consensus 239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~ 318 (444)
T PRK14902 239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA 318 (444)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence 334444445567789999999999999999986 23489999999999999999999999988999999998764 34
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
++||+|+++..
T Consensus 319 ~~fD~Vl~D~P 329 (444)
T PRK14902 319 EKFDKILVDAP 329 (444)
T ss_pred ccCCEEEEcCC
Confidence 78999998764
No 112
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.02 E-value=1.4e-09 Score=102.47 Aligned_cols=99 Identities=20% Similarity=0.205 Sum_probs=76.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---- 226 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---- 226 (253)
+.++..+..+.++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++++.|+.+++++++|+.+++
T Consensus 241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~ 320 (434)
T PRK14901 241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP 320 (434)
T ss_pred HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence 344444445567889999999999999999987 2 2489999999999999999999999988999999998875
Q ss_pred C-CCCccEEEEcccc---ceeccCCCCCC
Q 025428 227 L-ERQFQLVMDKGTL---DAIGLHPDGPL 251 (253)
Q Consensus 227 ~-~~~fD~Vi~~~~l---~~i~~~pd~~~ 251 (253)
. .++||.|+++... -.+..+|+.++
T Consensus 321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~ 349 (434)
T PRK14901 321 QWRGYFDRILLDAPCSGLGTLHRHPDARW 349 (434)
T ss_pred cccccCCEEEEeCCCCcccccccCcchhh
Confidence 2 3689999986432 22333566544
No 113
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.01 E-value=1.6e-09 Score=95.68 Aligned_cols=89 Identities=13% Similarity=0.020 Sum_probs=72.7
Q ss_pred ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC
Q 025428 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 228 (253)
Q Consensus 151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~ 228 (253)
..+.+...+..+.++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++++++|+.++++++.|...++..
T Consensus 58 ~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~ 137 (264)
T TIGR00446 58 ASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA 137 (264)
T ss_pred HHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence 33444444555567889999999999999999886 2 238999999999999999999999998899999998876533
Q ss_pred -CCccEEEEccc
Q 025428 229 -RQFQLVMDKGT 239 (253)
Q Consensus 229 -~~fD~Vi~~~~ 239 (253)
++||+|+++..
T Consensus 138 ~~~fD~Vl~D~P 149 (264)
T TIGR00446 138 VPKFDAILLDAP 149 (264)
T ss_pred ccCCCEEEEcCC
Confidence 67999998654
No 114
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.01 E-value=1.9e-09 Score=99.53 Aligned_cols=77 Identities=13% Similarity=0.075 Sum_probs=66.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC--cC-CCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~--~~-~~~fD~Vi~~~ 238 (253)
..+..+||||||+|.++..+|.. +...++|+|+++.|++.+.+++..+++.|+.++++|+..+ .+ ++++|.|+++.
T Consensus 121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 35569999999999999999988 3348999999999999999999999999999999999764 23 48899999765
Q ss_pred c
Q 025428 239 T 239 (253)
Q Consensus 239 ~ 239 (253)
.
T Consensus 201 P 201 (390)
T PRK14121 201 P 201 (390)
T ss_pred C
Confidence 4
No 115
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.01 E-value=1.7e-09 Score=95.16 Aligned_cols=75 Identities=20% Similarity=0.325 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++.. ..+++++++|+.+.+++ .||.|+++..++
T Consensus 28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~ 102 (258)
T PRK14896 28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ 102 (258)
T ss_pred CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence 467899999999999999999995 4999999999999999988754 35899999999987654 489999987665
No 116
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.01 E-value=1.1e-09 Score=103.05 Aligned_cols=102 Identities=17% Similarity=0.208 Sum_probs=76.0
Q ss_pred ceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428 136 CISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212 (253)
Q Consensus 136 ~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~ 212 (253)
.+.+.+..+.+........+.+.+.. ..++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|++|++.+++
T Consensus 261 ~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~ 339 (431)
T TIGR00479 261 SFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI 339 (431)
T ss_pred EEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC
Confidence 44555554444433333334433322 245679999999999999999988 45999999999999999999999999
Q ss_pred CceEEEEeccCCCc----C-CCCccEEEEcc
Q 025428 213 SCIKFLVDDVLDTK----L-ERQFQLVMDKG 238 (253)
Q Consensus 213 ~~i~~~~~D~~~~~----~-~~~fD~Vi~~~ 238 (253)
.|++++++|+.+.. . .++||+|+.+.
T Consensus 340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 89999999997631 2 25799998754
No 117
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.00 E-value=2.3e-09 Score=90.86 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
++.+|||+|||+|.++..+++.+. .+++++|+++.+++.++++.. ...+++++.+|+.+.+++ ++||+|+++.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~ 116 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL 116 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence 678999999999999999998854 389999999999999999875 224689999999988765 789999998888
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
|++
T Consensus 117 ~~~ 119 (223)
T TIGR01934 117 RNV 119 (223)
T ss_pred CCc
Confidence 764
No 118
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.00 E-value=8.8e-10 Score=97.34 Aligned_cols=80 Identities=15% Similarity=0.179 Sum_probs=62.4
Q ss_pred CCCEEEEEcCCCcH----HHHHHHhcC------CCcEEEEeCCHHHHHHHHHHHHh----cC------------------
Q 025428 164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------ 211 (253)
Q Consensus 164 ~~~~VLDiGcGtG~----~~~~la~~g------~~~v~gvD~s~~~l~~ar~~~~~----~g------------------ 211 (253)
++.+|||+|||||. +++.+++.+ ..+|+|+|+|+.||+.|++..-. .+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 455555541 12899999999999999985310 01
Q ss_pred ----C-CceEEEEeccCCCcC-CCCccEEEEcccccee
Q 025428 212 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI 243 (253)
Q Consensus 212 ----~-~~i~~~~~D~~~~~~-~~~fD~Vi~~~~l~~i 243 (253)
+ .+|+|.++|+.+.++ .++||+|+|..+|+|+
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf 216 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF 216 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC
Confidence 1 258999999999876 4899999999999987
No 119
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.00 E-value=1.7e-09 Score=95.64 Aligned_cols=70 Identities=23% Similarity=0.293 Sum_probs=59.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC----CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g----~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
...+|||+|||+|.++..+++.. ...++|+|+|+.|++.|+++. .++.++++|+.+++++ ++||+|++..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence 45689999999999999998762 126899999999999998753 4789999999998876 7999999854
No 120
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.99 E-value=1.1e-09 Score=100.80 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=73.3
Q ss_pred ceeecCCCcCCccccccchHHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428 136 CISISQGHMLNHVEDLKSEPVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213 (253)
Q Consensus 136 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~ 213 (253)
.+.+.++.+++.+......+++.+.... .+.+|||++||+|.+++.+++. +.+|+|+|+++.|++.|++|++.+++.
T Consensus 176 ~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~ 254 (362)
T PRK05031 176 IYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID 254 (362)
T ss_pred EEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 4566666677776677777777665532 2357999999999999988877 569999999999999999999999998
Q ss_pred ceEEEEeccCCC
Q 025428 214 CIKFLVDDVLDT 225 (253)
Q Consensus 214 ~i~~~~~D~~~~ 225 (253)
|++++++|+.+.
T Consensus 255 ~v~~~~~d~~~~ 266 (362)
T PRK05031 255 NVQIIRMSAEEF 266 (362)
T ss_pred cEEEEECCHHHH
Confidence 999999999764
No 121
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.99 E-value=2.5e-09 Score=100.67 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=74.3
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L 227 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~ 227 (253)
.+.++..+..+.++.+|||+|||+|..+..++.. +..+|+++|+|+.+++.+++++++.|+.+++++++|+..++ .
T Consensus 225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~ 304 (431)
T PRK14903 225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV 304 (431)
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence 3445555556678889999999999999999986 23489999999999999999999999988999999998775 2
Q ss_pred CCCccEEEEcccc
Q 025428 228 ERQFQLVMDKGTL 240 (253)
Q Consensus 228 ~~~fD~Vi~~~~l 240 (253)
.++||.|+++...
T Consensus 305 ~~~fD~Vl~DaPC 317 (431)
T PRK14903 305 QDTFDRILVDAPC 317 (431)
T ss_pred hccCCEEEECCCC
Confidence 4789999986544
No 122
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.98 E-value=1.3e-09 Score=98.05 Aligned_cols=75 Identities=23% Similarity=0.405 Sum_probs=69.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
.+++.|||+|||||.++.+.|+.|+.+|+++|.|. +++.|++.+..|++.+ |+++++.+++..+| .+.|+|++-.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 57899999999999999999999999999999998 5699999999999987 99999999998877 9999999843
No 123
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.98 E-value=7.1e-10 Score=88.28 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=69.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
..+++++|+|||+|.++...+-.+...|+|+||++++++.+++|+....+ ++.++++|+.++.+. +.||.++.+..|-
T Consensus 47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG 125 (185)
T ss_pred ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence 47889999999999999888877788999999999999999999988766 789999999998765 8899999887765
Q ss_pred e
Q 025428 242 A 242 (253)
Q Consensus 242 ~ 242 (253)
.
T Consensus 126 T 126 (185)
T KOG3420|consen 126 T 126 (185)
T ss_pred c
Confidence 4
No 124
>PRK04266 fibrillarin; Provisional
Probab=98.97 E-value=4.1e-09 Score=91.07 Aligned_cols=76 Identities=12% Similarity=0.163 Sum_probs=61.6
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC----cCCCCccEEE
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVM 235 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~----~~~~~fD~Vi 235 (253)
...++.+|||+|||+|.++..+++. +..+|+|+|++++|++.+.++++.. .|+.++.+|+.+. ++.++||+|+
T Consensus 69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~ 146 (226)
T PRK04266 69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIY 146 (226)
T ss_pred CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEE
Confidence 3357889999999999999999987 3348999999999999888776543 5899999999753 2346799999
Q ss_pred Ecc
Q 025428 236 DKG 238 (253)
Q Consensus 236 ~~~ 238 (253)
+..
T Consensus 147 ~d~ 149 (226)
T PRK04266 147 QDV 149 (226)
T ss_pred ECC
Confidence 754
No 125
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.96 E-value=1.6e-09 Score=99.48 Aligned_cols=89 Identities=12% Similarity=0.137 Sum_probs=69.6
Q ss_pred ceeecCCCcCCccccccchHHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428 136 CISISQGHMLNHVEDLKSEPVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213 (253)
Q Consensus 136 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~ 213 (253)
.+.+.++.+.+.+......+++.+.+.. .+.+|||+|||+|.+++.+++. +.+|+|+|++++|++.|++|++.+++.
T Consensus 167 ~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~ 245 (353)
T TIGR02143 167 IYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID 245 (353)
T ss_pred EEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence 3445555555555555555665544432 2347999999999999999887 569999999999999999999999998
Q ss_pred ceEEEEeccCCC
Q 025428 214 CIKFLVDDVLDT 225 (253)
Q Consensus 214 ~i~~~~~D~~~~ 225 (253)
|++++++|+.++
T Consensus 246 ~v~~~~~d~~~~ 257 (353)
T TIGR02143 246 NVQIIRMSAEEF 257 (353)
T ss_pred cEEEEEcCHHHH
Confidence 999999999764
No 126
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=3.6e-09 Score=77.03 Aligned_cols=76 Identities=28% Similarity=0.357 Sum_probs=64.6
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CCCccEEEEccccce
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDA 242 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~ 242 (253)
++||+|||+|.++..++.....+++++|+++.++..+++.....+..+++++.+|+.+... .++||+|+++.++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~ 78 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH 78 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence 4899999999999999985456999999999999999865544455579999999998763 478999999999887
No 127
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.96 E-value=2.1e-09 Score=95.23 Aligned_cols=74 Identities=20% Similarity=0.241 Sum_probs=62.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~Vi~~~~l 240 (253)
.++.+|||+|||+|.++..+++++. +|+|+|+++.|++.+++++.. .+++++++|+.+++++.. ++.|++|-.+
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY 115 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY 115 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence 4678999999999999999999965 999999999999999987642 479999999999876532 5888887654
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.96 E-value=5.2e-09 Score=98.41 Aligned_cols=87 Identities=13% Similarity=0.108 Sum_probs=70.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-C
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-E 228 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~ 228 (253)
+.+...+....++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++++.|+ +++++++|+.+++ + +
T Consensus 233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~ 311 (427)
T PRK10901 233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDG 311 (427)
T ss_pred HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhccc
Confidence 33444444556788999999999999999998843 4899999999999999999999887 5789999998764 2 3
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
++||.|+++...
T Consensus 312 ~~fD~Vl~D~Pc 323 (427)
T PRK10901 312 QPFDRILLDAPC 323 (427)
T ss_pred CCCCEEEECCCC
Confidence 689999976643
No 129
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.96 E-value=2.4e-09 Score=92.98 Aligned_cols=87 Identities=17% Similarity=0.248 Sum_probs=72.2
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL- 227 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~- 227 (253)
+..++.++.+..+.++|||+|||+|..+..++.. +..+|+++|+++++++.|+++++.+|+. +++++++|+.+...
T Consensus 56 ~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 56 EGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 4556667777778889999999999988888765 3459999999999999999999999986 59999999977521
Q ss_pred ------CCCccEEEEcc
Q 025428 228 ------ERQFQLVMDKG 238 (253)
Q Consensus 228 ------~~~fD~Vi~~~ 238 (253)
.++||+|+...
T Consensus 136 l~~~~~~~~fD~VfiDa 152 (234)
T PLN02781 136 LLNNDPKPEFDFAFVDA 152 (234)
T ss_pred HHhCCCCCCCCEEEECC
Confidence 36899999864
No 130
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.96 E-value=5e-09 Score=94.79 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc-CCC-ceEEEE-eccCCCc-----CCCCccEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLV 234 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~-g~~-~i~~~~-~D~~~~~-----~~~~fD~V 234 (253)
...++||||||+|.+...++.+ ...+++|+|+++.+++.|+++++.+ ++. +|++++ .|...+. ..+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 4579999999999888887765 2238999999999999999999999 786 487764 3332221 13689999
Q ss_pred EEcccccee
Q 025428 235 MDKGTLDAI 243 (253)
Q Consensus 235 i~~~~l~~i 243 (253)
+||..++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999988854
No 131
>PLN03075 nicotianamine synthase; Provisional
Probab=98.95 E-value=5.1e-09 Score=93.47 Aligned_cols=79 Identities=20% Similarity=0.263 Sum_probs=62.9
Q ss_pred CCCEEEEEcCCCcHH-HHHHH-hc-CCCcEEEEeCCHHHHHHHHHHHHh-cCCC-ceEEEEeccCCCcCC-CCccEEEEc
Q 025428 164 SSWSVLDIGTGNGLL-LQELS-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGFS-CIKFLVDDVLDTKLE-RQFQLVMDK 237 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~-~~~la-~~-g~~~v~gvD~s~~~l~~ar~~~~~-~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~ 237 (253)
...+|+|||||.|.+ +..++ .+ ...+++|+|+++++++.|++.+.. .++. +++|..+|+.+.... +.||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999997744 34343 33 334899999999999999999964 6776 499999999987533 789999999
Q ss_pred ccccee
Q 025428 238 GTLDAI 243 (253)
Q Consensus 238 ~~l~~i 243 (253)
++|++
T Consensus 203 -ALi~~ 207 (296)
T PLN03075 203 -ALVGM 207 (296)
T ss_pred -ccccc
Confidence 77765
No 132
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.94 E-value=5.5e-09 Score=93.90 Aligned_cols=79 Identities=19% Similarity=0.164 Sum_probs=67.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
.+..+|||||||+|.++..++++. ..+++++|. +.+++.+++++...|+. +++++.+|+.+.++++ +|+|++..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~~l 225 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRIL 225 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEhhh
Confidence 466799999999999999999883 348999998 78999999999988876 5999999998765554 7999998888
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
|+.
T Consensus 226 h~~ 228 (306)
T TIGR02716 226 YSA 228 (306)
T ss_pred hcC
Confidence 865
No 133
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.92 E-value=5.6e-09 Score=93.57 Aligned_cols=77 Identities=17% Similarity=0.269 Sum_probs=66.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.++.+|||||||+|.++..+++.+ .+|+++|+++.|++.+++++...+ ..+++++++|+.+..+ ..||.|+++..++
T Consensus 35 ~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~ 112 (294)
T PTZ00338 35 KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQ 112 (294)
T ss_pred CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCcc
Confidence 467899999999999999999985 489999999999999999987766 3579999999988654 4689999876554
No 134
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.92 E-value=2.1e-09 Score=90.00 Aligned_cols=98 Identities=16% Similarity=0.198 Sum_probs=75.8
Q ss_pred cCCccccccchHHHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEec
Q 025428 144 MLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD 221 (253)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D 221 (253)
+..+.+.+..++...+... ..+.++||+.||||.+++..+++|+++|+.||.++.++...++|++..++.+ ++++++|
T Consensus 21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d 100 (183)
T PF03602_consen 21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD 100 (183)
T ss_dssp S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence 4445567788888888876 7899999999999999999999999999999999999999999999988875 9999999
Q ss_pred cCCCc-----CCCCccEEEEccccc
Q 025428 222 VLDTK-----LERQFQLVMDKGTLD 241 (253)
Q Consensus 222 ~~~~~-----~~~~fD~Vi~~~~l~ 241 (253)
..... ...+||+|++...+.
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~ 125 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYA 125 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STT
T ss_pred HHHHHHhhcccCCCceEEEECCCcc
Confidence 75542 247899999866544
No 135
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.86 E-value=1.8e-08 Score=83.97 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=62.1
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHhcCCC-c---------EEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC
Q 025428 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFS-D---------LTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL 227 (253)
Q Consensus 159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~-~---------v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~ 227 (253)
+....++..|||..||+|.+++..+..+.. . ++|+|+++++++.|++|++..|+.. +.+.+.|+.++++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~ 102 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL 102 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence 334467789999999999999988876321 3 7899999999999999999998874 8999999999984
Q ss_pred -CCCccEEEEcccc
Q 025428 228 -ERQFQLVMDKGTL 240 (253)
Q Consensus 228 -~~~fD~Vi~~~~l 240 (253)
.+++|+|+++..+
T Consensus 103 ~~~~~d~IvtnPPy 116 (179)
T PF01170_consen 103 PDGSVDAIVTNPPY 116 (179)
T ss_dssp TTSBSCEEEEE--S
T ss_pred ccCCCCEEEECcch
Confidence 5899999997654
No 136
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.85 E-value=8.4e-09 Score=94.71 Aligned_cols=91 Identities=26% Similarity=0.369 Sum_probs=66.4
Q ss_pred hcceeecCCCcCCccccccchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428 134 SLCISISQGHMLNHVEDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211 (253)
Q Consensus 134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g 211 (253)
++.+.+.++.+++........|++.+... ..+..|||+.||+|.++..+|+. +.+|+|+|+++.+++.|++|++.++
T Consensus 164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~ 242 (352)
T PF05958_consen 164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG 242 (352)
T ss_dssp TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence 34566777777877777777777665443 22348999999999999999998 5699999999999999999999999
Q ss_pred CCceEEEEeccCCC
Q 025428 212 FSCIKFLVDDVLDT 225 (253)
Q Consensus 212 ~~~i~~~~~D~~~~ 225 (253)
+.|++|+.+++.++
T Consensus 243 i~n~~f~~~~~~~~ 256 (352)
T PF05958_consen 243 IDNVEFIRGDAEDF 256 (352)
T ss_dssp --SEEEEE--SHHC
T ss_pred CCcceEEEeeccch
Confidence 99999999887553
No 137
>PLN02672 methionine S-methyltransferase
Probab=98.84 E-value=8.7e-09 Score=105.46 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=63.5
Q ss_pred CCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC----------------CceEEEEeccCCCcC
Q 025428 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVDDVLDTKL 227 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~----------------~~i~~~~~D~~~~~~ 227 (253)
+.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|++.+++ .+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 4689999999999999999873 35899999999999999999987643 269999999987643
Q ss_pred C--CCccEEEEccc
Q 025428 228 E--RQFQLVMDKGT 239 (253)
Q Consensus 228 ~--~~fD~Vi~~~~ 239 (253)
. .+||+|++|..
T Consensus 199 ~~~~~fDlIVSNPP 212 (1082)
T PLN02672 199 DNNIELDRIVGCIP 212 (1082)
T ss_pred ccCCceEEEEECCC
Confidence 2 36999999875
No 138
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.84 E-value=2.1e-08 Score=94.26 Aligned_cols=87 Identities=13% Similarity=0.052 Sum_probs=68.4
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-- 227 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-- 227 (253)
.+.++..+..+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++++.|+. ++.+..+|....+.
T Consensus 226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~ 305 (426)
T TIGR00563 226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA 305 (426)
T ss_pred HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence 3444444445567889999999999999999986 4348999999999999999999999886 24447778765543
Q ss_pred -CCCccEEEEcc
Q 025428 228 -ERQFQLVMDKG 238 (253)
Q Consensus 228 -~~~fD~Vi~~~ 238 (253)
.++||.|++..
T Consensus 306 ~~~~fD~VllDa 317 (426)
T TIGR00563 306 ENEQFDRILLDA 317 (426)
T ss_pred cccccCEEEEcC
Confidence 37899999764
No 139
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.83 E-value=1.5e-08 Score=88.87 Aligned_cols=75 Identities=23% Similarity=0.361 Sum_probs=63.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc---EEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD---~Vi~~~~ 239 (253)
.++.+|||||||+|.++..+++++. +++++|+++.|++.++++... ..+++++++|+.+.+++ .|| +|+++-.
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence 4678999999999999999999964 899999999999999987643 35799999999988764 466 8888766
Q ss_pred cc
Q 025428 240 LD 241 (253)
Q Consensus 240 l~ 241 (253)
+|
T Consensus 104 y~ 105 (253)
T TIGR00755 104 YN 105 (253)
T ss_pred hh
Confidence 54
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.83 E-value=1.8e-08 Score=90.64 Aligned_cols=81 Identities=14% Similarity=0.090 Sum_probs=60.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCC-cCCCCc-----cE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT-KLERQF-----QL 233 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~-~~~~~f-----D~ 233 (253)
.++.+|||+|||||..+..|++.. ..+++++|+|++||+.+++++..... .++.++++|+.+. +....+ .+
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~ 141 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG 141 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence 356799999999999999999883 24899999999999999998765431 1578899999874 333322 34
Q ss_pred EEEcccccee
Q 025428 234 VMDKGTLDAI 243 (253)
Q Consensus 234 Vi~~~~l~~i 243 (253)
+++..+++++
T Consensus 142 ~~~gs~~~~~ 151 (301)
T TIGR03438 142 FFPGSTIGNF 151 (301)
T ss_pred EEecccccCC
Confidence 4444566665
No 141
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1e-08 Score=96.25 Aligned_cols=103 Identities=20% Similarity=0.273 Sum_probs=83.1
Q ss_pred hcceeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428 134 SLCISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (253)
Q Consensus 134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~ 210 (253)
...+.+....+.+....+...|.+..... .++.+|||+-||.|.+++.+|++ ..+|+|+|+++++++.|++|++.+
T Consensus 260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n 338 (432)
T COG2265 260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAAN 338 (432)
T ss_pred ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHc
Confidence 34455666666666666666666555443 35679999999999999999988 569999999999999999999999
Q ss_pred CCCceEEEEeccCCCcCC----CCccEEEEc
Q 025428 211 GFSCIKFLVDDVLDTKLE----RQFQLVMDK 237 (253)
Q Consensus 211 g~~~i~~~~~D~~~~~~~----~~fD~Vi~~ 237 (253)
++.|++|+.++.++.... ..+|+|+.+
T Consensus 339 ~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD 369 (432)
T COG2265 339 GIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD 369 (432)
T ss_pred CCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence 999999999999987643 478888864
No 142
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.82 E-value=1.4e-08 Score=86.69 Aligned_cols=70 Identities=21% Similarity=0.217 Sum_probs=56.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-C-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-CCCc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-ERQF 231 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~~~f 231 (253)
.++.+|||||||||.++..+++.. . .+|+|||+++ | ..+.+++++++|+.+.. + .++|
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 567899999999999999999873 2 4899999998 2 13357899999999853 3 3789
Q ss_pred cEEEEcccccee
Q 025428 232 QLVMDKGTLDAI 243 (253)
Q Consensus 232 D~Vi~~~~l~~i 243 (253)
|+|+++.+.++.
T Consensus 119 D~V~S~~~~~~~ 130 (209)
T PRK11188 119 QVVMSDMAPNMS 130 (209)
T ss_pred CEEecCCCCccC
Confidence 999998876664
No 143
>PRK04457 spermidine synthase; Provisional
Probab=98.80 E-value=1.4e-08 Score=89.66 Aligned_cols=75 Identities=15% Similarity=0.136 Sum_probs=62.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc--CCCCccEEEEc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK 237 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~--~~~~fD~Vi~~ 237 (253)
.+..+|||||||+|.++..+++. +..+++++|+++++++.|++++...+. ++++++++|+.+.. .+++||+|+++
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 45679999999999999999877 445899999999999999998765443 47999999987652 23689999985
No 144
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.79 E-value=5.6e-08 Score=81.10 Aligned_cols=98 Identities=18% Similarity=0.199 Sum_probs=83.4
Q ss_pred cCCccccccchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEec
Q 025428 144 MLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221 (253)
Q Consensus 144 ~~~~~~~~~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D 221 (253)
...+.+.+...+..++.. ...+.++||+.+|+|.+++..+++|+..++.||.+..++...++|++..++. +++++..|
T Consensus 22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d 101 (187)
T COG0742 22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND 101 (187)
T ss_pred cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence 444556778888899888 4899999999999999999999999999999999999999999999988854 68999999
Q ss_pred cCCCc--CC--CCccEEEEccccc
Q 025428 222 VLDTK--LE--RQFQLVMDKGTLD 241 (253)
Q Consensus 222 ~~~~~--~~--~~fD~Vi~~~~l~ 241 (253)
+.... .. ++||+|+....++
T Consensus 102 a~~~L~~~~~~~~FDlVflDPPy~ 125 (187)
T COG0742 102 ALRALKQLGTREPFDLVFLDPPYA 125 (187)
T ss_pred HHHHHHhcCCCCcccEEEeCCCCc
Confidence 88442 22 3599999987766
No 145
>PRK04148 hypothetical protein; Provisional
Probab=98.77 E-value=4.8e-08 Score=77.46 Aligned_cols=66 Identities=26% Similarity=0.513 Sum_probs=57.2
Q ss_pred CCCEEEEEcCCCcH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEc
Q 025428 164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDK 237 (253)
Q Consensus 164 ~~~~VLDiGcGtG~-~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~ 237 (253)
++.++||||||+|. ++..|++.|. +|+++|+++.+++.++++ .++++++|+.+..+. +.+|+|.+.
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysi 84 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSI 84 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEe
Confidence 45789999999996 9999998887 999999999999988775 468999999998765 789998873
No 146
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.76 E-value=3.8e-08 Score=85.98 Aligned_cols=103 Identities=23% Similarity=0.302 Sum_probs=73.3
Q ss_pred eecCCC-cCCccccc-cchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428 138 SISQGH-MLNHVEDL-KSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF 212 (253)
Q Consensus 138 ~i~~~~-~~~~~~~~-~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~ 212 (253)
...++. +|...++. ...+++.+.+. .++..+||+|||+|.++..++.. +...|+++|.|+.++.+|.+|++++++
T Consensus 118 ~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l 197 (328)
T KOG2904|consen 118 VCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL 197 (328)
T ss_pred EecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence 344444 55544432 34444444433 34458999999999999999987 656999999999999999999999988
Q ss_pred Cc-eEEEEe----ccCCCc--CCCCccEEEEcccc
Q 025428 213 SC-IKFLVD----DVLDTK--LERQFQLVMDKGTL 240 (253)
Q Consensus 213 ~~-i~~~~~----D~~~~~--~~~~fD~Vi~~~~l 240 (253)
.+ +.+++- |..+.. +.++.|++++|...
T Consensus 198 ~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPY 232 (328)
T KOG2904|consen 198 SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPY 232 (328)
T ss_pred cCceEEEecccccccccccccccCceeEEecCCCc
Confidence 74 666644 443332 23889999998653
No 147
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.76 E-value=3e-08 Score=82.93 Aligned_cols=70 Identities=20% Similarity=0.242 Sum_probs=54.3
Q ss_pred ccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-C
Q 025428 160 DKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-E 228 (253)
Q Consensus 160 ~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~ 228 (253)
....++.+|||+|||+|.++..++... ..+|+++|+|+.+ ...+++++++|+.+.. . .
T Consensus 28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~ 96 (188)
T TIGR00438 28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGD 96 (188)
T ss_pred cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence 344678899999999999999998873 3379999999964 1246889999987643 2 3
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
++||+|++++..
T Consensus 97 ~~~D~V~~~~~~ 108 (188)
T TIGR00438 97 DKVDVVMSDAAP 108 (188)
T ss_pred CCccEEEcCCCC
Confidence 679999997653
No 148
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.75 E-value=1.7e-08 Score=82.77 Aligned_cols=73 Identities=21% Similarity=0.315 Sum_probs=56.3
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC----CCccEEEEcccc
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE----RQFQLVMDKGTL 240 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~----~~fD~Vi~~~~l 240 (253)
.|||+.||.|..++.+|+. +.+|++||+++..++.|+.|++..|+. +|+++++|+.+.... ..||+|+++..+
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW 79 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW 79 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence 6999999999999999999 669999999999999999999999976 799999999886422 228999986543
No 149
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.75 E-value=2.4e-08 Score=92.43 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=74.6
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC--
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-- 227 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~-- 227 (253)
++.....+.+...+++|||+.|-||.++...+..|+++||+||+|..+|+.|++|++.||++ .+.|+++|+.++.-
T Consensus 205 qR~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~ 284 (393)
T COG1092 205 QRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA 284 (393)
T ss_pred hHHHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence 44455566666669999999999999999999999999999999999999999999999986 48999999988742
Q ss_pred ---CCCccEEEEcc
Q 025428 228 ---ERQFQLVMDKG 238 (253)
Q Consensus 228 ---~~~fD~Vi~~~ 238 (253)
..+||+|+...
T Consensus 285 ~~~g~~fDlIilDP 298 (393)
T COG1092 285 ERRGEKFDLIILDP 298 (393)
T ss_pred HhcCCcccEEEECC
Confidence 24899999753
No 150
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.72 E-value=3.7e-08 Score=88.27 Aligned_cols=74 Identities=22% Similarity=0.386 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK 237 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~ 237 (253)
.+++.|||+|||+|.++.+.+..|+++|++++.|+ |.+.|++..+.+++. +|.++.|-+++..++++.|++|+-
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISE 250 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISE 250 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEec
Confidence 47889999999999999999999999999999987 999999999988876 699999999999999999999973
No 151
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.72 E-value=2.9e-08 Score=83.55 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceE-EEEeccCCCc--CCCCccEEEEccccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGTLD 241 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~-~~~~D~~~~~--~~~~fD~Vi~~~~l~ 241 (253)
...||++|||||..-.+.--....+||++|.++.|-+.+.+.++.+...++. |++++.++++ .++++|+|++..+|+
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 3478999999999888776554459999999999999999999887666766 9999999998 349999999988777
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
..
T Consensus 157 Sv 158 (252)
T KOG4300|consen 157 SV 158 (252)
T ss_pred cc
Confidence 54
No 152
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.71 E-value=4.9e-08 Score=88.36 Aligned_cols=80 Identities=20% Similarity=0.133 Sum_probs=69.8
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCcCC-CCccEEEE
Q 025428 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLE-RQFQLVMD 236 (253)
Q Consensus 159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~~~-~~fD~Vi~ 236 (253)
+....++..|||--||||.+++...-.|. +++|+|++..|++-|+.|++..++....+... |+.+++++ +++|.|++
T Consensus 192 La~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 192 LARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred HhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 33447888999999999999999999988 99999999999999999999999888777766 99999987 45999887
Q ss_pred ccc
Q 025428 237 KGT 239 (253)
Q Consensus 237 ~~~ 239 (253)
...
T Consensus 271 DPP 273 (347)
T COG1041 271 DPP 273 (347)
T ss_pred cCC
Confidence 543
No 153
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.70 E-value=1.4e-08 Score=95.28 Aligned_cols=93 Identities=23% Similarity=0.288 Sum_probs=78.8
Q ss_pred hhhcceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428 132 TKSLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 132 ~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
..++.|.|.++.+++.++...+-|...+.. +..+..+||+.||||.++..+++. .++|+|+++++.+++-|+.|++
T Consensus 348 l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~ 426 (534)
T KOG2187|consen 348 LLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQ 426 (534)
T ss_pred cCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcch
Confidence 345678899999998887665555555443 356789999999999999999987 7799999999999999999999
Q ss_pred hcCCCceEEEEeccCCC
Q 025428 209 RDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 209 ~~g~~~i~~~~~D~~~~ 225 (253)
.+|++|++|++|-++++
T Consensus 427 ~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 427 INGISNATFIVGQAEDL 443 (534)
T ss_pred hcCccceeeeecchhhc
Confidence 99999999999966665
No 154
>PLN02476 O-methyltransferase
Probab=98.70 E-value=6.1e-08 Score=86.02 Aligned_cols=89 Identities=8% Similarity=0.097 Sum_probs=74.0
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~ 226 (253)
..+..++.++.+..+.++|||||||+|..+..++.. + ..+++++|.++++++.|++++++.|+. +|+++.+|+.+..
T Consensus 104 ~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L 183 (278)
T PLN02476 104 PDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL 183 (278)
T ss_pred HHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence 446677777777778899999999999999999975 2 237999999999999999999999997 6999999987742
Q ss_pred --C-----CCCccEEEEcc
Q 025428 227 --L-----ERQFQLVMDKG 238 (253)
Q Consensus 227 --~-----~~~fD~Vi~~~ 238 (253)
+ .++||+|+...
T Consensus 184 ~~l~~~~~~~~FD~VFIDa 202 (278)
T PLN02476 184 KSMIQNGEGSSYDFAFVDA 202 (278)
T ss_pred HHHHhcccCCCCCEEEECC
Confidence 1 25799998754
No 155
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.69 E-value=3.7e-08 Score=83.88 Aligned_cols=89 Identities=19% Similarity=0.227 Sum_probs=71.4
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~ 226 (253)
..+..++..+.+..+.++||+|||++|..+..++.. + ..+|+.+|++++..+.|++++++.|+. +|+++.+|+.+..
T Consensus 31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l 110 (205)
T PF01596_consen 31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL 110 (205)
T ss_dssp HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence 345566666666667789999999999999999976 2 249999999999999999999999986 6999999997742
Q ss_pred C-------CCCccEEEEcc
Q 025428 227 L-------ERQFQLVMDKG 238 (253)
Q Consensus 227 ~-------~~~fD~Vi~~~ 238 (253)
. .++||+|+...
T Consensus 111 ~~l~~~~~~~~fD~VFiDa 129 (205)
T PF01596_consen 111 PELANDGEEGQFDFVFIDA 129 (205)
T ss_dssp HHHHHTTTTTSEEEEEEES
T ss_pred HHHHhccCCCceeEEEEcc
Confidence 1 25799999754
No 156
>PRK00811 spermidine synthase; Provisional
Probab=98.69 E-value=5.3e-08 Score=86.86 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=63.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--C---CCceEEEEeccCCCcC--CCCccEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVDDVLDTKL--ERQFQLVM 235 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g---~~~i~~~~~D~~~~~~--~~~fD~Vi 235 (253)
...+||+||||+|.++..++++ +..+|+++|+++.+++.|++.+... + -++++++.+|+..... .++||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 5679999999999999999987 6679999999999999999987542 1 1369999999877532 47899999
Q ss_pred Eccc
Q 025428 236 DKGT 239 (253)
Q Consensus 236 ~~~~ 239 (253)
+..+
T Consensus 156 ~D~~ 159 (283)
T PRK00811 156 VDST 159 (283)
T ss_pred ECCC
Confidence 8653
No 157
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.68 E-value=4.6e-08 Score=90.70 Aligned_cols=74 Identities=24% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~ 238 (253)
+.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.+++.+++++++|+..+.. .++||+|+++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP 133 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP 133 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence 468999999999999999876 555899999999999999999999999888999999977543 46799998864
No 158
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.68 E-value=1.6e-08 Score=86.81 Aligned_cols=78 Identities=19% Similarity=0.299 Sum_probs=59.7
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc-CCCCccEEEEccccceec
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG 244 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~i~ 244 (253)
.++|+|||+|..++.++.+ +++|+|+|+|+.||++|++.....-. ........+..++. .+++.|+|++-+++|++-
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd 114 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD 114 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence 8999999999889999999 88999999999999999886432111 12334444444443 258999999999999874
Q ss_pred c
Q 025428 245 L 245 (253)
Q Consensus 245 ~ 245 (253)
+
T Consensus 115 l 115 (261)
T KOG3010|consen 115 L 115 (261)
T ss_pred h
Confidence 3
No 159
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.67 E-value=3.8e-08 Score=87.70 Aligned_cols=86 Identities=22% Similarity=0.254 Sum_probs=66.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc----
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK---- 226 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~---- 226 (253)
+....++....++++|||+.|-||.++...+..|+.+|++||.|..+++.+++|+..||++ +++|+++|+.+..
T Consensus 112 R~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 112 RENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK 191 (286)
T ss_dssp HHHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred HhhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence 3344444455678999999999999999999989889999999999999999999999975 6999999998742
Q ss_pred CCCCccEEEEcc
Q 025428 227 LERQFQLVMDKG 238 (253)
Q Consensus 227 ~~~~fD~Vi~~~ 238 (253)
-.++||+||+..
T Consensus 192 ~~~~fD~IIlDP 203 (286)
T PF10672_consen 192 KGGRFDLIILDP 203 (286)
T ss_dssp HTT-EEEEEE--
T ss_pred cCCCCCEEEECC
Confidence 137899999854
No 160
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.67 E-value=5e-08 Score=84.32 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=36.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ 202 (253)
.++.+|||+|||||.++..++++|+.+|+|+|++++|+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4677999999999999999999988899999999988875
No 161
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.66 E-value=9.9e-08 Score=80.89 Aligned_cols=78 Identities=19% Similarity=0.178 Sum_probs=58.9
Q ss_pred CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428 162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
..++.+|||+.||.|.+++.+++. ..+.|+++|++|.+++..+++++.|++.+ +..+++|+.++...+.||.|+++..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 457889999999999999999984 34589999999999999999999999985 8999999999866789999998654
No 162
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.64 E-value=2.6e-09 Score=91.07 Aligned_cols=84 Identities=27% Similarity=0.336 Sum_probs=60.8
Q ss_pred HHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CCC
Q 025428 155 PVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LER 229 (253)
Q Consensus 155 l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~~ 229 (253)
+.+++.+.. +-.++||+|||||..+..+-.. ..+++|+|||++|++.|.++--.. .+.++++..+. -+.
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~e 187 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQE 187 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCC
Confidence 344444442 3579999999999999999988 669999999999999999862111 23334443322 237
Q ss_pred CccEEEEccccceec
Q 025428 230 QFQLVMDKGTLDAIG 244 (253)
Q Consensus 230 ~fD~Vi~~~~l~~i~ 244 (253)
+||+|+.-.||-+++
T Consensus 188 r~DLi~AaDVl~YlG 202 (287)
T COG4976 188 RFDLIVAADVLPYLG 202 (287)
T ss_pred cccchhhhhHHHhhc
Confidence 899999988887764
No 163
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.64 E-value=1.1e-07 Score=81.39 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=74.0
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEE-eccCCC
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-DDVLDT 225 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~-~D~~~~ 225 (253)
..+..++.++.+..+.++||+||++.|.-+..++.. + ..++|.||+++++++.|++++++.|+.+ |.++. +|..+.
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 446667777777788899999999999999999987 3 3489999999999999999999999986 88888 587665
Q ss_pred cC---CCCccEEEEc
Q 025428 226 KL---ERQFQLVMDK 237 (253)
Q Consensus 226 ~~---~~~fD~Vi~~ 237 (253)
.. .++||+||..
T Consensus 125 l~~~~~~~fDliFID 139 (219)
T COG4122 125 LSRLLDGSFDLVFID 139 (219)
T ss_pred HHhccCCCccEEEEe
Confidence 32 3899999874
No 164
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.61 E-value=2.8e-07 Score=80.02 Aligned_cols=80 Identities=23% Similarity=0.215 Sum_probs=70.5
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEE
Q 025428 159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVM 235 (253)
Q Consensus 159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi 235 (253)
.....++.+|||.|+|+|.++..|+.. | ..+|+.+|+-++.++.|++|++..++.+ +.+..+|+.+...++.||+|+
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~ 168 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF 168 (256)
T ss_pred HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE
Confidence 334578999999999999999999975 3 3599999999999999999999988887 999999999988778999999
Q ss_pred Ecc
Q 025428 236 DKG 238 (253)
Q Consensus 236 ~~~ 238 (253)
...
T Consensus 169 LDm 171 (256)
T COG2519 169 LDL 171 (256)
T ss_pred EcC
Confidence 753
No 165
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.60 E-value=1.8e-07 Score=88.39 Aligned_cols=72 Identities=21% Similarity=0.356 Sum_probs=60.3
Q ss_pred CCEEEEEcCCCcHHHHHHHhcC-----CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEE
Q 025428 165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMD 236 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g-----~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~ 236 (253)
+..|||+|||+|.++.+.++.+ ..+|++|+.|+.++...+++++.++.. +|+++++|+++...+.++|+||+
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 5789999999999998887764 459999999999998888887888885 69999999999998899999997
No 166
>PTZ00146 fibrillarin; Provisional
Probab=98.59 E-value=2.5e-07 Score=82.52 Aligned_cols=74 Identities=16% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~Vi~ 236 (253)
.++.+|||+|||+|.++..+++. + ...|+++|+++.|++...+.++.. .||.++.+|+.... +..+||+|++
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~ 208 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA 208 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence 57789999999999999999998 3 238999999998765555544322 58899999987531 2368999998
Q ss_pred cc
Q 025428 237 KG 238 (253)
Q Consensus 237 ~~ 238 (253)
..
T Consensus 209 Dv 210 (293)
T PTZ00146 209 DV 210 (293)
T ss_pred eC
Confidence 65
No 167
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.59 E-value=2.9e-07 Score=77.76 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=59.1
Q ss_pred CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---C-CCCccEEEE
Q 025428 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L-ERQFQLVMD 236 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~-~~~fD~Vi~ 236 (253)
..+||||||.|.++..+|.. +-..++|+|+....+..+.+++...++.|+.++++|+..+. + ++++|.|..
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i 94 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI 94 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE
Confidence 38999999999999999988 44499999999999999999999999999999999998842 2 377777765
No 168
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.55 E-value=2.9e-07 Score=82.44 Aligned_cols=84 Identities=14% Similarity=0.081 Sum_probs=66.2
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CC-
Q 025428 155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER- 229 (253)
Q Consensus 155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~- 229 (253)
+++.+.. .++..+||++||.|.++..+++.. ..+|+|+|.++.|++.|++++.. ..+++++++|+.++.. +.
T Consensus 11 vl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~ 87 (296)
T PRK00050 11 VVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEG 87 (296)
T ss_pred HHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcC
Confidence 3444432 467799999999999999999983 35899999999999999998765 3579999999988742 22
Q ss_pred --CccEEEEccccc
Q 025428 230 --QFQLVMDKGTLD 241 (253)
Q Consensus 230 --~fD~Vi~~~~l~ 241 (253)
++|.|+++.-+.
T Consensus 88 ~~~vDgIl~DLGvS 101 (296)
T PRK00050 88 LGKVDGILLDLGVS 101 (296)
T ss_pred CCccCEEEECCCcc
Confidence 799999855333
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.53 E-value=3.3e-07 Score=75.90 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=55.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEeccCCCc----C-CCCccE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTK----L-ERQFQL 233 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g--~-~~i~~~~~D~~~~~----~-~~~fD~ 233 (253)
.++.+||++|||+|..++.++.. +..+|+..|+++ .++..+.|++.++ . .++.+...|+.+.. . +.+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 57789999999999999999999 667999999999 9999999999876 2 36889998886632 2 268999
Q ss_pred EEEccccce
Q 025428 234 VMDKGTLDA 242 (253)
Q Consensus 234 Vi~~~~l~~ 242 (253)
|+...++..
T Consensus 123 IlasDv~Y~ 131 (173)
T PF10294_consen 123 ILASDVLYD 131 (173)
T ss_dssp EEEES--S-
T ss_pred EEEecccch
Confidence 999887764
No 170
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=3.5e-07 Score=83.21 Aligned_cols=77 Identities=16% Similarity=0.177 Sum_probs=70.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
..|.+|||+.+|.|.+++.+|++|...|+++|+||.+++..++|++.|++.+ +..++||..+.... +.||-|+++..
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 4689999999999999999999987679999999999999999999999987 99999999998776 88999998664
No 171
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.52 E-value=3e-07 Score=83.69 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-------CC---CceEEEEeccCCCc------C
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVDDVLDTK------L 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-------g~---~~i~~~~~D~~~~~------~ 227 (253)
++.+|||+|||-|.-+.-....+...++|+|++...|+.|++|.+.. .. -...|+.+|..... .
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 67899999999999888888887889999999999999999998321 11 14678899887542 1
Q ss_pred C-CCccEEEEccccceecc
Q 025428 228 E-RQFQLVMDKGTLDAIGL 245 (253)
Q Consensus 228 ~-~~fD~Vi~~~~l~~i~~ 245 (253)
. .+||+|-|...||+..-
T Consensus 142 ~~~~FDvVScQFalHY~Fe 160 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFE 160 (331)
T ss_dssp TTS-EEEEEEES-GGGGGS
T ss_pred cCCCcceeehHHHHHHhcC
Confidence 2 59999999999998754
No 172
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.49 E-value=1.1e-06 Score=76.92 Aligned_cols=80 Identities=24% Similarity=0.329 Sum_probs=62.1
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC----CCCc
Q 025428 159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQF 231 (253)
Q Consensus 159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~----~~~f 231 (253)
.....++.+||+.|+|+|.++..|++. | ..+|+.+|+.++.++.|+++++..|+. ++.+.+.|+.+..+ +..+
T Consensus 35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~ 114 (247)
T PF08704_consen 35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF 114 (247)
T ss_dssp HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence 334578999999999999999999986 3 349999999999999999999999997 69999999975433 3679
Q ss_pred cEEEEcc
Q 025428 232 QLVMDKG 238 (253)
Q Consensus 232 D~Vi~~~ 238 (253)
|.|+...
T Consensus 115 DavfLDl 121 (247)
T PF08704_consen 115 DAVFLDL 121 (247)
T ss_dssp EEEEEES
T ss_pred cEEEEeC
Confidence 9999753
No 173
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=7.2e-07 Score=78.25 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=65.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC--CccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~--~fD~Vi~~~~l 240 (253)
.++..||+||+|.|.++..|++++. +|+++++++.++...+++.. ...|++++++|+....++. .++.|++|-..
T Consensus 29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY 105 (259)
T COG0030 29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVANLPY 105 (259)
T ss_pred CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence 3578999999999999999999965 89999999999999999875 2358999999999998875 78888887644
No 174
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.49 E-value=3.5e-07 Score=80.05 Aligned_cols=89 Identities=13% Similarity=0.175 Sum_probs=72.7
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~ 226 (253)
..+..++..+.+..+.++||+|||++|.-+..++.. + ..+++++|++++..+.|+++++..|+. +|+++.+|+.+..
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 345566777777677889999999999999999875 2 238999999999999999999999976 6999999987752
Q ss_pred C--------CCCccEEEEcc
Q 025428 227 L--------ERQFQLVMDKG 238 (253)
Q Consensus 227 ~--------~~~fD~Vi~~~ 238 (253)
. .++||+|+...
T Consensus 145 ~~l~~~~~~~~~fD~iFiDa 164 (247)
T PLN02589 145 DQMIEDGKYHGTFDFIFVDA 164 (247)
T ss_pred HHHHhccccCCcccEEEecC
Confidence 1 25899988754
No 175
>PLN02366 spermidine synthase
Probab=98.44 E-value=7.8e-07 Score=80.28 Aligned_cols=77 Identities=16% Similarity=0.331 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCc--C-CCCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--L-ERQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~--~-~~~fD~V 234 (253)
...++||+||||.|.++..++++ +..+|+.+|+++.+++.|++.+... ++ ++++++.+|....- . +++||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 35689999999999999999988 3468999999999999999987542 22 36999999986542 2 4689999
Q ss_pred EEccc
Q 025428 235 MDKGT 239 (253)
Q Consensus 235 i~~~~ 239 (253)
++...
T Consensus 170 i~D~~ 174 (308)
T PLN02366 170 IVDSS 174 (308)
T ss_pred EEcCC
Confidence 98643
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=9.4e-07 Score=73.08 Aligned_cols=76 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
...+|+||||+|..+.+|++. +.....++|+|+.+++..++.++.++. +++.++.|+..-..+++.|+++.|..+-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence 568999999999999999987 344788999999999999999988876 7999999998875568999999876543
No 177
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.43 E-value=2.4e-07 Score=79.71 Aligned_cols=117 Identities=22% Similarity=0.287 Sum_probs=81.4
Q ss_pred CCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEE
Q 025428 92 LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI 171 (253)
Q Consensus 92 l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDi 171 (253)
-....|||..|...-.+|... ..|..+...++.. ... ....+||+|
T Consensus 33 ~~~~k~wD~fy~~~~~rFfkd----------------R~wL~~Efpel~~----------------~~~--~~~~~ilEv 78 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRFFKD----------------RNWLLREFPELLP----------------VDE--KSAETILEV 78 (264)
T ss_pred cchhhhhhhhhhhccccccch----------------hHHHHHhhHHhhC----------------ccc--cChhhheee
Confidence 355889999999988877522 2355332211111 000 122389999
Q ss_pred cCCCcHHHHHHHhcCC---CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CCCCccEEEEcccccee
Q 025428 172 GTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAI 243 (253)
Q Consensus 172 GcGtG~~~~~la~~g~---~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~~~fD~Vi~~~~l~~i 243 (253)
|||.|.....+.+-.. -.|+++|.|+.+|+..+++....- .++...+.|+.... .++++|+|++..+|.+|
T Consensus 79 GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi 157 (264)
T KOG2361|consen 79 GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI 157 (264)
T ss_pred ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc
Confidence 9999999999998722 289999999999999999865433 35666666665432 23899999999999998
No 178
>PRK03612 spermidine synthase; Provisional
Probab=98.42 E-value=3.6e-07 Score=88.12 Aligned_cols=77 Identities=23% Similarity=0.324 Sum_probs=61.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHH--Hh---cCC--CceEEEEeccCCCc--CCCCcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR---DGF--SCIKFLVDDVLDTK--LERQFQ 232 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~--~~---~g~--~~i~~~~~D~~~~~--~~~~fD 232 (253)
++.++|||||||+|..+..+++++. ++++++|+++++++.++++. .. ..+ ++++++++|..+.. .+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 4567999999999999999998854 69999999999999999842 21 112 36999999998753 247899
Q ss_pred EEEEccc
Q 025428 233 LVMDKGT 239 (253)
Q Consensus 233 ~Vi~~~~ 239 (253)
+|+++..
T Consensus 376 vIi~D~~ 382 (521)
T PRK03612 376 VIIVDLP 382 (521)
T ss_pred EEEEeCC
Confidence 9998743
No 179
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.41 E-value=7.7e-07 Score=78.78 Aligned_cols=76 Identities=26% Similarity=0.342 Sum_probs=60.7
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCc--CCCCccEEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~--~~~~fD~Vi~ 236 (253)
...+||+||||+|.++..+++++ ..+++++|+++++++.+++.+...+ ..+++++.+|..+.. .+++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 44599999999999999998884 5689999999999999999875432 136888888886642 2478999998
Q ss_pred ccc
Q 025428 237 KGT 239 (253)
Q Consensus 237 ~~~ 239 (253)
...
T Consensus 152 D~~ 154 (270)
T TIGR00417 152 DST 154 (270)
T ss_pred eCC
Confidence 654
No 180
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.41 E-value=5.4e-07 Score=77.85 Aligned_cols=71 Identities=20% Similarity=0.314 Sum_probs=60.7
Q ss_pred CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CC-CCccEEEE
Q 025428 166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQLVMD 236 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~-~~fD~Vi~ 236 (253)
..+||||||.|.++..+|.+ +-..++|||+....+..|.+.+.+.++.|+.++++|+.++. ++ ++.|-|..
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i 125 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI 125 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence 58999999999999999998 44489999999999999999999999999999999998763 12 35555554
No 181
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.39 E-value=6.1e-07 Score=82.97 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=65.0
Q ss_pred CEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CCCccEEEEcc
Q 025428 166 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG 238 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi~~~ 238 (253)
.+|||+.||+|..++.++.. |..+|+++|+|+.+++.+++|++.+++.+++++++|+..+.. .++||+|....
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP 122 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP 122 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence 58999999999999999998 678999999999999999999999998889999999987643 26799998754
No 182
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.39 E-value=1.5e-06 Score=76.08 Aligned_cols=75 Identities=21% Similarity=0.262 Sum_probs=63.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
++...||++|.|||.++..|.+.|. +|+++++++.|+....++.+..... ..++++||+...+++ .||.++++-.
T Consensus 57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-~fd~cVsNlP 132 (315)
T KOG0820|consen 57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-RFDGCVSNLP 132 (315)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-ccceeeccCC
Confidence 6788999999999999999999965 9999999999999999997644333 499999999887654 6899988553
No 183
>PRK01581 speE spermidine synthase; Validated
Probab=98.39 E-value=6.9e-07 Score=81.88 Aligned_cols=76 Identities=24% Similarity=0.344 Sum_probs=60.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHH-----HhcCC--CceEEEEeccCCCc--CCCCcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA-----NRDGF--SCIKFLVDDVLDTK--LERQFQ 232 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~-----~~~g~--~~i~~~~~D~~~~~--~~~~fD 232 (253)
....+||+||||+|..+..+++++ ..+|++||++++|++.|++.. ....+ ++++++.+|+.+.. ..++||
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 456799999999999999999873 469999999999999999621 11122 47999999998753 237899
Q ss_pred EEEEcc
Q 025428 233 LVMDKG 238 (253)
Q Consensus 233 ~Vi~~~ 238 (253)
+|++..
T Consensus 229 VIIvDl 234 (374)
T PRK01581 229 VIIIDF 234 (374)
T ss_pred EEEEcC
Confidence 999873
No 184
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.35 E-value=2.3e-06 Score=78.53 Aligned_cols=78 Identities=23% Similarity=0.248 Sum_probs=67.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCC----------------------------------------cEEEEeCCHHHHHH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFS----------------------------------------DLTGVDYSEDAINL 202 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~----------------------------------------~v~gvD~s~~~l~~ 202 (253)
.++..++|.-||+|.+++..|-.+.. .++|+|+++.+|+.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 45679999999999999998877421 27799999999999
Q ss_pred HHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcccc
Q 025428 203 AQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTL 240 (253)
Q Consensus 203 ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~~l 240 (253)
|+.|+...|+.. |+|.++|+..++.+ +.+|+||+|...
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY 309 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY 309 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc
Confidence 999999999975 99999999999876 899999998654
No 185
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.33 E-value=7e-07 Score=74.29 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 237 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~ 237 (253)
...+.|+|+|+|.++...++. +++|++++.+|...+.|.+|+...|..|++++.+|+....+ ...|+|+|-
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicE 103 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICE 103 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHH
Confidence 368999999999999999988 77999999999999999999988898899999999999887 568888873
No 186
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=98.32 E-value=2.8e-06 Score=73.60 Aligned_cols=72 Identities=19% Similarity=0.247 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~ 241 (253)
.+..+|||||+|+|.++..+++. +..+++.+|. |++++.+++ ..+|+++.+|+. -+++. +|+|+...+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-ccceeeehhhh
Confidence 45579999999999999999988 4449999999 889998888 358999999999 45666 99999999999
Q ss_pred ee
Q 025428 242 AI 243 (253)
Q Consensus 242 ~i 243 (253)
..
T Consensus 170 ~~ 171 (241)
T PF00891_consen 170 DW 171 (241)
T ss_dssp GS
T ss_pred hc
Confidence 76
No 187
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.27 E-value=5.6e-06 Score=82.60 Aligned_cols=90 Identities=28% Similarity=0.264 Sum_probs=69.8
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-------------C------------------------------CC
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-------------G------------------------------FS 188 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-------------g------------------------------~~ 188 (253)
.+.|+.+..-..++..++|.+||+|.+++..+.. + ..
T Consensus 178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~ 257 (702)
T PRK11783 178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPS 257 (702)
T ss_pred HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence 3444433322245789999999999999888752 0 11
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC---CCccEEEEccccc
Q 025428 189 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLD 241 (253)
Q Consensus 189 ~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~---~~fD~Vi~~~~l~ 241 (253)
+++|+|+++.+++.|++|+..+|+.+ +.+.++|+.+++.+ ++||+|++|..+-
T Consensus 258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg 314 (702)
T PRK11783 258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG 314 (702)
T ss_pred eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence 58999999999999999999999874 99999999988643 4699999987653
No 188
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.25 E-value=3.8e-06 Score=66.55 Aligned_cols=59 Identities=17% Similarity=0.232 Sum_probs=52.0
Q ss_pred EEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
++||+|||+|.++..++..+.. +++++|.++.+++.++++++.+++.++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 4899999999999999988553 7999999999999999999988887888888777653
No 189
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.23 E-value=6.1e-06 Score=78.51 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=74.1
Q ss_pred cccchHHHHhc--cCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 150 DLKSEPVEEND--KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 150 ~~~~~l~~~l~--~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
+..+.+...+. .+.++.+|||+|||.|.-+..++.. +...++++|+++..++..++++++.|+.|+.+.+.|...+
T Consensus 97 d~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~ 176 (470)
T PRK11933 97 EASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF 176 (470)
T ss_pred CHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence 44555554444 5578899999999999999999987 2348999999999999999999999999999999998876
Q ss_pred c--CCCCccEEEEcccc
Q 025428 226 K--LERQFQLVMDKGTL 240 (253)
Q Consensus 226 ~--~~~~fD~Vi~~~~l 240 (253)
. +++.||.|+.....
T Consensus 177 ~~~~~~~fD~ILvDaPC 193 (470)
T PRK11933 177 GAALPETFDAILLDAPC 193 (470)
T ss_pred hhhchhhcCeEEEcCCC
Confidence 3 35789999975543
No 190
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.23 E-value=2.5e-06 Score=76.28 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-C-----CceEEEEeccCCCc------CCC-
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-F-----SCIKFLVDDVLDTK------LER- 229 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~-----~~i~~~~~D~~~~~------~~~- 229 (253)
.++..++|+|||.|.-++..-+.|...++|+||.+-.|+.|+++.+... . -.+.|+.+|..... ++.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp 195 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP 195 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence 3678899999999999999988888999999999999999999886431 1 13789999986532 233
Q ss_pred CccEEEEccccceec
Q 025428 230 QFQLVMDKGTLDAIG 244 (253)
Q Consensus 230 ~fD~Vi~~~~l~~i~ 244 (253)
+||+|-|..++|+..
T Consensus 196 ~fDivScQF~~HYaF 210 (389)
T KOG1975|consen 196 RFDIVSCQFAFHYAF 210 (389)
T ss_pred CcceeeeeeeEeeee
Confidence 499999999999864
No 191
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.20 E-value=6.3e-06 Score=65.87 Aligned_cols=74 Identities=23% Similarity=0.404 Sum_probs=58.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEeccCCCcCCCCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~-----~g~~~v~gvD~s~~~l~~ar~~~~~~g--~-~~i~~~~~D~~~~~~~~~fD~V 234 (253)
.+...|+|+|||.|.++..++. ....+|+|+|.++..++.++++.+..+ + .++.+..+++.........+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4667999999999999999999 533499999999999999999988776 4 3577888777665444556666
Q ss_pred EE
Q 025428 235 MD 236 (253)
Q Consensus 235 i~ 236 (253)
+.
T Consensus 104 vg 105 (141)
T PF13679_consen 104 VG 105 (141)
T ss_pred EE
Confidence 64
No 192
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.18 E-value=1.9e-06 Score=73.32 Aligned_cols=74 Identities=22% Similarity=0.217 Sum_probs=62.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc----CC-CCccEEEEc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----LE-RQFQLVMDK 237 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~----~~-~~fD~Vi~~ 237 (253)
....|+|..||.|..++.++.++. .|++||+++.-|..|+.|++-.|++ +|+|++||+.++- +. ..+|+|+..
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 446899999999999999999966 9999999999999999999999998 5999999998863 22 345566654
Q ss_pred c
Q 025428 238 G 238 (253)
Q Consensus 238 ~ 238 (253)
.
T Consensus 173 p 173 (263)
T KOG2730|consen 173 P 173 (263)
T ss_pred C
Confidence 3
No 193
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.16 E-value=5.1e-06 Score=74.68 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=64.0
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEE
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLV 219 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--------g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~ 219 (253)
.+...+.+++ ...++.+|||.+||+|.++..+.+. ...+++|+|+++.++..|+-++...++. +..+.+
T Consensus 33 ~i~~l~~~~~-~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 33 EIVDLMVKLL-NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHHH-TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHHHhhh-hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 3444445555 3346678999999999999888762 2348999999999999999988766653 357899
Q ss_pred eccCCCcC---CCCccEEEEcccccee
Q 025428 220 DDVLDTKL---ERQFQLVMDKGTLDAI 243 (253)
Q Consensus 220 ~D~~~~~~---~~~fD~Vi~~~~l~~i 243 (253)
+|....+. ...||+|+++..+-..
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~ 138 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGNPPFGSK 138 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred cccccccccccccccccccCCCCcccc
Confidence 99876654 2689999998877654
No 194
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.15 E-value=9.8e-06 Score=69.99 Aligned_cols=46 Identities=28% Similarity=0.395 Sum_probs=42.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
.....+|||||.+|.++..+++. |...|+|+||++..|..|++++.
T Consensus 57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r 103 (288)
T KOG2899|consen 57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR 103 (288)
T ss_pred cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence 46679999999999999999998 77799999999999999999864
No 195
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.12 E-value=1.6e-05 Score=66.66 Aligned_cols=74 Identities=19% Similarity=0.282 Sum_probs=62.6
Q ss_pred EEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
+++|||+|.|.-++.++-. +..+++.+|.+..-+...+.-....|++|++++++.+++.....+||+|++..+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~ 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc
Confidence 8999999999999999876 3448999999999999999999999999999999999994445899999997753
No 196
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.11 E-value=3.8e-06 Score=70.31 Aligned_cols=75 Identities=21% Similarity=0.346 Sum_probs=66.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
-.+++|||+|+|+|..++..++.|+..|+..|+.+..+...+-|++.||+ +|.+...|+.- .+..||+++...++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeecee
Confidence 36789999999999999999999999999999999999999999999986 89999999877 45789999986654
No 197
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.07 E-value=5.7e-06 Score=67.53 Aligned_cols=53 Identities=21% Similarity=0.477 Sum_probs=45.2
Q ss_pred EEEeCCHHHHHHHHHHHHhcC---CCceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428 191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI 243 (253)
Q Consensus 191 ~gvD~s~~~l~~ar~~~~~~g---~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i 243 (253)
+|+|+|++||+.|+++.+..+ ..+++++++|+.+++++ ++||+|++..++|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~ 57 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV 57 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC
Confidence 589999999999988765322 34799999999999876 799999999999987
No 198
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.06 E-value=3.4e-06 Score=72.35 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
+....++|||||.|.+...+...|..+++-+|.|-.|++.++..- ..++ .+..+.+|-+.+++. +++|+|++...+|
T Consensus 71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH 148 (325)
T KOG2940|consen 71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH 148 (325)
T ss_pred hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence 355689999999999999999999889999999999999998642 2333 467888999999886 8999999999999
Q ss_pred eeccCC
Q 025428 242 AIGLHP 247 (253)
Q Consensus 242 ~i~~~p 247 (253)
|+.--|
T Consensus 149 W~NdLP 154 (325)
T KOG2940|consen 149 WTNDLP 154 (325)
T ss_pred hhccCc
Confidence 985433
No 199
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.05 E-value=2.6e-05 Score=69.87 Aligned_cols=78 Identities=19% Similarity=0.310 Sum_probs=48.5
Q ss_pred CCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-CCC-ceEEEEeccC----CCcC--CCCccEE
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVDDVL----DTKL--ERQFQLV 234 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-g~~-~i~~~~~D~~----~~~~--~~~fD~V 234 (253)
..++||||||...+=-.|+.+ |+ +++|+|+++..++.|+++++.+ ++. +|+++...-. .... .+.||++
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 468999999988774444333 66 9999999999999999999999 886 4888766422 2111 2689999
Q ss_pred EEcccccee
Q 025428 235 MDKGTLDAI 243 (253)
Q Consensus 235 i~~~~l~~i 243 (253)
+|+..||.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999998864
No 200
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.03 E-value=2.1e-05 Score=69.34 Aligned_cols=84 Identities=25% Similarity=0.269 Sum_probs=64.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC---
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--- 229 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~--- 229 (253)
..+++.+.. .++..|||||+|+|.++..|++.+ ++++++|+++.+++..+++... -.+++++++|+..+....
T Consensus 20 ~~Iv~~~~~-~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~~~~ 95 (262)
T PF00398_consen 20 DKIVDALDL-SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYDLLK 95 (262)
T ss_dssp HHHHHHHTC-GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGGHCS
T ss_pred HHHHHhcCC-CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHHhhc
Confidence 334444432 367899999999999999999996 6999999999999999988762 248999999999987543
Q ss_pred -CccEEEEcccc
Q 025428 230 -QFQLVMDKGTL 240 (253)
Q Consensus 230 -~fD~Vi~~~~l 240 (253)
....|+.+-..
T Consensus 96 ~~~~~vv~NlPy 107 (262)
T PF00398_consen 96 NQPLLVVGNLPY 107 (262)
T ss_dssp SSEEEEEEEETG
T ss_pred CCceEEEEEecc
Confidence 55667765443
No 201
>PLN02823 spermine synthase
Probab=98.02 E-value=1.4e-05 Score=73.01 Aligned_cols=74 Identities=12% Similarity=0.348 Sum_probs=61.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC--C--CceEEEEeccCCCcC--CCCccEEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F--SCIKFLVDDVLDTKL--ERQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g--~--~~i~~~~~D~~~~~~--~~~fD~Vi~ 236 (253)
..++||.||+|.|..+..++++ +..+|+.+|+++++++.|++.+...+ + ++++++.+|....-. .++||+|+.
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 4579999999999999998886 45689999999999999999875431 2 479999999988632 378999998
Q ss_pred c
Q 025428 237 K 237 (253)
Q Consensus 237 ~ 237 (253)
.
T Consensus 183 D 183 (336)
T PLN02823 183 D 183 (336)
T ss_pred c
Confidence 6
No 202
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.01 E-value=1.6e-05 Score=74.84 Aligned_cols=84 Identities=32% Similarity=0.452 Sum_probs=72.9
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccceecc
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGL 245 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~~ 245 (253)
++|-+|||+-.++..+-+.|+..|+.+|+|+-.++....+.. ....-+.+...|+..+.++ ++||+|+..+++|++..
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~ 129 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE 129 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence 899999999999999999999999999999998888877654 2223589999999999987 99999999999999977
Q ss_pred CCCCCC
Q 025428 246 HPDGPL 251 (253)
Q Consensus 246 ~pd~~~ 251 (253)
..+.++
T Consensus 130 de~a~~ 135 (482)
T KOG2352|consen 130 DEDALL 135 (482)
T ss_pred Cchhhh
Confidence 666544
No 203
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.01 E-value=1.3e-05 Score=68.33 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=57.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA 242 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~ 242 (253)
...+.||+|+|.|+++..+...-+.+|-.+|.++..++.|++.+...+-.-.++.+.-+.++.++ ++||+|++..++-|
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh 134 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH 134 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence 45799999999999998776555889999999999999999876553222367888888888665 79999999999988
Q ss_pred ec
Q 025428 243 IG 244 (253)
Q Consensus 243 i~ 244 (253)
+.
T Consensus 135 LT 136 (218)
T PF05891_consen 135 LT 136 (218)
T ss_dssp S-
T ss_pred CC
Confidence 73
No 204
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=6.7e-05 Score=69.09 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=83.4
Q ss_pred ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC---CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~---~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
++..+.+...+..+.++.+|||++++.|.=+..++.... ..|+++|+++.-++..++|+++.|+.|+.+++.|...+
T Consensus 141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~ 220 (355)
T COG0144 141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL 220 (355)
T ss_pred cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence 356677777788888999999999999999999998832 25799999999999999999999999988998888765
Q ss_pred c---CC-CCccEEEEccccceecc---CCCCCCC
Q 025428 226 K---LE-RQFQLVMDKGTLDAIGL---HPDGPLK 252 (253)
Q Consensus 226 ~---~~-~~fD~Vi~~~~l~~i~~---~pd~~~~ 252 (253)
+ .. ++||.|+........++ +|+.++.
T Consensus 221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~ 254 (355)
T COG0144 221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWR 254 (355)
T ss_pred cccccccCcCcEEEECCCCCCCcccccCcccccc
Confidence 4 22 36999999775554444 5776554
No 205
>PRK10742 putative methyltransferase; Provisional
Probab=97.97 E-value=3.6e-05 Score=67.13 Aligned_cols=79 Identities=15% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCC--EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------C--C-CceEEEEeccCCCcC--CC
Q 025428 163 LSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------G--F-SCIKFLVDDVLDTKL--ER 229 (253)
Q Consensus 163 ~~~~--~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------g--~-~~i~~~~~D~~~~~~--~~ 229 (253)
.++. +|||+-+|+|..++.++..|+ +|+++|.++.+....++++++. + + .+++++++|..++.. ..
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 4555 899999999999999999988 5999999999999999988763 2 2 469999999877642 35
Q ss_pred CccEEEEccccce
Q 025428 230 QFQLVMDKGTLDA 242 (253)
Q Consensus 230 ~fD~Vi~~~~l~~ 242 (253)
+||+|++...+-+
T Consensus 164 ~fDVVYlDPMfp~ 176 (250)
T PRK10742 164 RPQVVYLDPMFPH 176 (250)
T ss_pred CCcEEEECCCCCC
Confidence 7999998665544
No 206
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=2.3e-05 Score=66.38 Aligned_cols=89 Identities=17% Similarity=0.309 Sum_probs=69.7
Q ss_pred cccchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhc-CCC--cEEEEeCCHHHHHHHHHHHHhcC--------CC--ce
Q 025428 150 DLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG--------FS--CI 215 (253)
Q Consensus 150 ~~~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~-g~~--~v~gvD~s~~~l~~ar~~~~~~g--------~~--~i 215 (253)
.+.+.+++.|.. +.++.+.||+|+|+|.++..++.. |.. .++|||.-++.++.+++++...- ++ ++
T Consensus 67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l 146 (237)
T KOG1661|consen 67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL 146 (237)
T ss_pred HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence 445556666653 368899999999999999999865 332 45999999999999999986542 22 58
Q ss_pred EEEEeccCCCcCC-CCccEEEEcc
Q 025428 216 KFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 216 ~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
.++.+|.+....+ .+||.|.+-.
T Consensus 147 ~ivvGDgr~g~~e~a~YDaIhvGA 170 (237)
T KOG1661|consen 147 SIVVGDGRKGYAEQAPYDAIHVGA 170 (237)
T ss_pred EEEeCCccccCCccCCcceEEEcc
Confidence 8999999988665 8999998753
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.97 E-value=2.4e-05 Score=67.01 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=65.5
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccEEEEccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGT 239 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~Vi~~~~ 239 (253)
..+++|||+|.|.=++.++-. ...+|+-+|....-+...+......+++|++++++.++++..... ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence 579999999999999998833 334799999999999999999999999999999999999875544 999999764
No 208
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.94 E-value=7e-05 Score=66.48 Aligned_cols=80 Identities=21% Similarity=0.326 Sum_probs=67.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCc----CCCCccEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLVM 235 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~----~~~~fD~Vi 235 (253)
...+||||.||.|+..+-.... + ..+|...|+|+..++.+++.++..|+.++ +|.++|+.+.. .....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 5569999999999998777765 3 25899999999999999999999999986 99999998863 234579999
Q ss_pred Ecccccee
Q 025428 236 DKGTLDAI 243 (253)
Q Consensus 236 ~~~~l~~i 243 (253)
.++.++.+
T Consensus 215 VsGL~ElF 222 (311)
T PF12147_consen 215 VSGLYELF 222 (311)
T ss_pred EecchhhC
Confidence 99988876
No 209
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.92 E-value=2.5e-05 Score=75.47 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=60.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------CC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g---------~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------~~ 228 (253)
...+|||.|||+|.++..++.+. ..+++|+|+++.++..++.++...+...+.+.+.|..... ..
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 34699999999999999888652 1378999999999999999987665224556666644321 12
Q ss_pred CCccEEEEcccccee
Q 025428 229 RQFQLVMDKGTLDAI 243 (253)
Q Consensus 229 ~~fD~Vi~~~~l~~i 243 (253)
+.||+|+.|..+--+
T Consensus 111 ~~fD~IIgNPPy~~~ 125 (524)
T TIGR02987 111 DLFDIVITNPPYGRL 125 (524)
T ss_pred CcccEEEeCCCcccc
Confidence 589999999877655
No 210
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.86 E-value=4e-05 Score=64.96 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=61.5
Q ss_pred EEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCcC---------CCCccEEE
Q 025428 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM 235 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~~---------~~~fD~Vi 235 (253)
+||+||||||-.+.+++++ ..-...-.|.++..+...++.+...+++|+ .-+..|+...+. .++||+|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 5999999999999999998 333677899999998888888888887763 455667766532 25899999
Q ss_pred Ecccccee
Q 025428 236 DKGTLDAI 243 (253)
Q Consensus 236 ~~~~l~~i 243 (253)
+..++|-+
T Consensus 108 ~~N~lHI~ 115 (204)
T PF06080_consen 108 CINMLHIS 115 (204)
T ss_pred ehhHHHhc
Confidence 99999865
No 211
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.86 E-value=5.4e-05 Score=64.49 Aligned_cols=71 Identities=25% Similarity=0.317 Sum_probs=55.1
Q ss_pred EEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 168 VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
|.||||-=|.+...|.+.|.. +++++|+++.-++.|+++++..|+. +++++.+|-.+...+ +..|+|+..|
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence 689999999999999999654 8999999999999999999999986 499999997664333 3478888654
No 212
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.86 E-value=3e-05 Score=66.06 Aligned_cols=78 Identities=21% Similarity=0.312 Sum_probs=51.5
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH-------hcCC--CceEEEEeccCCCcCC----
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKLE---- 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~-------~~g~--~~i~~~~~D~~~~~~~---- 228 (253)
.++...+|||||.|......+-. ++.+.+||++.+...+.|+...+ ..|. .++++.++|+.+.+..
T Consensus 41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~ 120 (205)
T PF08123_consen 41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW 120 (205)
T ss_dssp -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence 57789999999999998877765 78789999999998887776432 2333 3588999999876431
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
...|+|++|.++
T Consensus 121 s~AdvVf~Nn~~ 132 (205)
T PF08123_consen 121 SDADVVFVNNTC 132 (205)
T ss_dssp HC-SEEEE--TT
T ss_pred cCCCEEEEeccc
Confidence 457999998753
No 213
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.85 E-value=2.9e-05 Score=67.85 Aligned_cols=70 Identities=24% Similarity=0.372 Sum_probs=53.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-CCCCccEEEEccccce
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA 242 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~ 242 (253)
...++||||+|.|..+..++.. +++|++.|.|+.|....++ .|+ +++ +..+.. .+.+||+|.|.++|+.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~---~vl--~~~~w~~~~~~fDvIscLNvLDR 163 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF---TVL--DIDDWQQTDFKFDVISCLNVLDR 163 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC---eEE--ehhhhhccCCceEEEeehhhhhc
Confidence 4578999999999999999998 8899999999999765554 354 332 222222 2368999999999986
Q ss_pred e
Q 025428 243 I 243 (253)
Q Consensus 243 i 243 (253)
.
T Consensus 164 c 164 (265)
T PF05219_consen 164 C 164 (265)
T ss_pred c
Confidence 4
No 214
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.82 E-value=3.8e-05 Score=73.88 Aligned_cols=73 Identities=15% Similarity=0.134 Sum_probs=60.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~ 236 (253)
....+||||||.|.++..+|.. .-..++|+|+....+..+.+++...++.|+.++++|+..+. + ++++|.|+.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i 423 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI 423 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence 4568999999999999999988 33489999999999999999988889999999988875432 2 356666664
No 215
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.79 E-value=6.9e-05 Score=68.16 Aligned_cols=69 Identities=14% Similarity=0.176 Sum_probs=54.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~ 239 (253)
.++.++|||||++|.++..+.++|. +|++||..+ |-... . .-.+|..+.+|...... .+.+|+++|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L----~--~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL----M--DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh----h--CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 5788999999999999999999988 999999665 22211 1 11468888888877655 578999999764
No 216
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.77 E-value=7.9e-05 Score=66.45 Aligned_cols=74 Identities=26% Similarity=0.344 Sum_probs=62.3
Q ss_pred CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCcC--CCCccEEEEcc
Q 025428 166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--ERQFQLVMDKG 238 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~~--~~~fD~Vi~~~ 238 (253)
++||-||.|.|..+..++++. ..+++.|||++..++.|++.+.... -++++++.+|..++-- +.+||+|+...
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999994 5699999999999999999875432 2478999999988743 35899999865
Q ss_pred c
Q 025428 239 T 239 (253)
Q Consensus 239 ~ 239 (253)
+
T Consensus 158 t 158 (282)
T COG0421 158 T 158 (282)
T ss_pred C
Confidence 4
No 217
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.69 E-value=0.00014 Score=59.61 Aligned_cols=76 Identities=24% Similarity=0.410 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-CCCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L-ERQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~-~~~fD~V 234 (253)
.++..||++|.|||-++..+.++|.. .++++++|++......++. +.++++.||+.++. . ...||.|
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v 121 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV 121 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence 56779999999999999999999754 8999999999998888764 35668999998875 1 2679999
Q ss_pred EEcccccee
Q 025428 235 MDKGTLDAI 243 (253)
Q Consensus 235 i~~~~l~~i 243 (253)
+|.-.+-.+
T Consensus 122 iS~lPll~~ 130 (194)
T COG3963 122 ISGLPLLNF 130 (194)
T ss_pred EeccccccC
Confidence 996655544
No 218
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.65 E-value=0.0001 Score=65.55 Aligned_cols=81 Identities=23% Similarity=0.213 Sum_probs=54.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~ 239 (253)
....+|||+|||+|..+..+... ...+++++|.|+.|++.++..++...-. ...+......+...-...|+|++.++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 35579999999999877766654 3458999999999999999977543211 11111111111111134499999999
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
|.-+
T Consensus 112 L~EL 115 (274)
T PF09243_consen 112 LNEL 115 (274)
T ss_pred hhcC
Confidence 9877
No 219
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.61 E-value=0.00015 Score=64.80 Aligned_cols=92 Identities=17% Similarity=0.105 Sum_probs=73.9
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK- 226 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~- 226 (253)
...+.+...+..+.++.+|||+++|.|.-+..++... ...++++|+++..+...+.++++.|+.++...+.|.....
T Consensus 71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~ 150 (283)
T PF01189_consen 71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP 150 (283)
T ss_dssp HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence 3445555555666788999999999999999999872 3489999999999999999999999999999988888763
Q ss_pred --CCCCccEEEEccccc
Q 025428 227 --LERQFQLVMDKGTLD 241 (253)
Q Consensus 227 --~~~~fD~Vi~~~~l~ 241 (253)
....||.|+.....-
T Consensus 151 ~~~~~~fd~VlvDaPCS 167 (283)
T PF01189_consen 151 KKPESKFDRVLVDAPCS 167 (283)
T ss_dssp HHHTTTEEEEEEECSCC
T ss_pred cccccccchhhcCCCcc
Confidence 234699999865443
No 220
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.59 E-value=0.00012 Score=64.09 Aligned_cols=76 Identities=18% Similarity=0.236 Sum_probs=59.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEeccCCCcC--CC-CccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVDDVLDTKL--ER-QFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~----~~i~~~~~D~~~~~~--~~-~fD~V 234 (253)
...++||-||.|.|..+..+.++. ..++++||+++.+++.|++-+..... ++++++.+|...+-. .+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 367899999999999999999884 56999999999999999997654321 379999999977642 24 89999
Q ss_pred EEcc
Q 025428 235 MDKG 238 (253)
Q Consensus 235 i~~~ 238 (253)
+...
T Consensus 155 i~D~ 158 (246)
T PF01564_consen 155 IVDL 158 (246)
T ss_dssp EEES
T ss_pred EEeC
Confidence 9743
No 221
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=97.58 E-value=0.00035 Score=59.12 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCcH----HHHHHHhc---CCC---cEEEEeCCHHHHHHHHHHH--------------Hh-----cC--C
Q 025428 164 SSWSVLDIGTGNGL----LLQELSKQ---GFS---DLTGVDYSEDAINLAQSLA--------------NR-----DG--F 212 (253)
Q Consensus 164 ~~~~VLDiGcGtG~----~~~~la~~---g~~---~v~gvD~s~~~l~~ar~~~--------------~~-----~g--~ 212 (253)
+.-+|+-.||+||- +++.+... ... +++|+|+|+.+|+.|++-. ++ .+ .
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 44699999999997 34444441 111 8999999999999998711 00 01 1
Q ss_pred -------CceEEEEeccCC-CcCCCCccEEEEcccccee
Q 025428 213 -------SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAI 243 (253)
Q Consensus 213 -------~~i~~~~~D~~~-~~~~~~fD~Vi~~~~l~~i 243 (253)
.+|+|.+.|+.+ .+..+.||+|+|.+||-++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF 149 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF 149 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe
Confidence 258999999999 3344899999999999876
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.58 E-value=0.00033 Score=60.15 Aligned_cols=86 Identities=15% Similarity=0.216 Sum_probs=70.2
Q ss_pred cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--
Q 025428 152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-- 226 (253)
Q Consensus 152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~-- 226 (253)
...++..+-+....+++||||.=||.-+..+|.. ...+|+++|++++..+.+.+..+..|+. +|+++++...+..
T Consensus 61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 4556666666678899999999999999888876 2238999999999999999999999987 4999999987752
Q ss_pred ----C-CCCccEEEEc
Q 025428 227 ----L-ERQFQLVMDK 237 (253)
Q Consensus 227 ----~-~~~fD~Vi~~ 237 (253)
. .++||.+|..
T Consensus 141 l~~~~~~~tfDfaFvD 156 (237)
T KOG1663|consen 141 LLADGESGTFDFAFVD 156 (237)
T ss_pred HHhcCCCCceeEEEEc
Confidence 1 2789988863
No 223
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.57 E-value=0.00039 Score=60.58 Aligned_cols=86 Identities=20% Similarity=0.124 Sum_probs=64.0
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV 234 (253)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V 234 (253)
-..+.......+|+|||||.--++....... ...++|+||+..+++....-+...+. +.++...|+..-+.+...|+.
T Consensus 97 ~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~Dla 175 (251)
T PF07091_consen 97 DEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLA 175 (251)
T ss_dssp HHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEE
T ss_pred HHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchh
Confidence 3444444567899999999999999888773 23899999999999999999888886 788888899888777889998
Q ss_pred EEccccce
Q 025428 235 MDKGTLDA 242 (253)
Q Consensus 235 i~~~~l~~ 242 (253)
+..=+++.
T Consensus 176 LllK~lp~ 183 (251)
T PF07091_consen 176 LLLKTLPC 183 (251)
T ss_dssp EEET-HHH
T ss_pred hHHHHHHH
Confidence 87655553
No 224
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.56 E-value=3e-05 Score=66.76 Aligned_cols=74 Identities=20% Similarity=0.281 Sum_probs=62.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--CC-CCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LE-RQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~~-~~fD~Vi~ 236 (253)
+++.+|||.++|-|..++..+++|+.+|+.++.+++.|++|.-|-=..++. +|+++.||+.+.- ++ .+||+|+-
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 568999999999999999999999989999999999999998764333332 5899999998864 44 78999884
No 225
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.56 E-value=0.00045 Score=52.16 Aligned_cols=74 Identities=36% Similarity=0.548 Sum_probs=50.9
Q ss_pred EEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC--CcCCC--CccEEEEccccc
Q 025428 168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLER--QFQLVMDKGTLD 241 (253)
Q Consensus 168 VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~--~~~~~--~fD~Vi~~~~l~ 241 (253)
++|+|||+|... .+..... ..++|+|+++.++..++......+...+.+..+|... .++.. .||++.....++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999976 3333322 2799999999999996655433221116888888887 56654 799995444444
Q ss_pred e
Q 025428 242 A 242 (253)
Q Consensus 242 ~ 242 (253)
+
T Consensus 131 ~ 131 (257)
T COG0500 131 L 131 (257)
T ss_pred c
Confidence 3
No 226
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=0.001 Score=58.55 Aligned_cols=83 Identities=17% Similarity=0.162 Sum_probs=69.5
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC---C
Q 025428 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE---R 229 (253)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~---~ 229 (253)
+-.+....++.+||+-|+|+|.++.++++. + -.+++.+|+-+...+.|++-.+..|+. |+++.+-|+...-+. .
T Consensus 97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~ 176 (314)
T KOG2915|consen 97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL 176 (314)
T ss_pred HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence 333344579999999999999999999988 2 249999999999999999999999886 799999999887653 6
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
.+|.|+...
T Consensus 177 ~aDaVFLDl 185 (314)
T KOG2915|consen 177 KADAVFLDL 185 (314)
T ss_pred ccceEEEcC
Confidence 789998754
No 227
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.42 E-value=0.00088 Score=60.34 Aligned_cols=78 Identities=15% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-CCccEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-RQFQLVM 235 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-~~fD~Vi 235 (253)
.++..++|.-+|.|..+..+++. +..+|+|+|.++.+++.++++++..+ .++.++++++.++.. . +++|.|+
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl 97 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL 97 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence 46789999999999999999987 33699999999999999999886543 379999999987641 2 5689888
Q ss_pred Eccccc
Q 025428 236 DKGTLD 241 (253)
Q Consensus 236 ~~~~l~ 241 (253)
.+--+.
T Consensus 98 ~DLGvS 103 (305)
T TIGR00006 98 VDLGVS 103 (305)
T ss_pred EeccCC
Confidence 755333
No 228
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.40 E-value=8.3e-05 Score=61.54 Aligned_cols=68 Identities=26% Similarity=0.466 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-C--CC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-E--RQ 230 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~--~~ 230 (253)
.+.+|||+||++|.++..+.+++ ..+|+|+|+.+. ..+.++.++++|+.+.. + . ++
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~ 91 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK 91 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence 45799999999999999999997 459999999985 12235666677765431 1 1 58
Q ss_pred ccEEEEccccce
Q 025428 231 FQLVMDKGTLDA 242 (253)
Q Consensus 231 fD~Vi~~~~l~~ 242 (253)
||+|++....+.
T Consensus 92 ~dlv~~D~~~~~ 103 (181)
T PF01728_consen 92 FDLVLSDMAPNV 103 (181)
T ss_dssp ESEEEE------
T ss_pred cceeccccccCC
Confidence 999999885544
No 229
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.35 E-value=0.00047 Score=61.68 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=58.1
Q ss_pred CCEEEEEcCCCcH----HHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHH------------------Hh-----cC-
Q 025428 165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLA------------------NR-----DG- 211 (253)
Q Consensus 165 ~~~VLDiGcGtG~----~~~~la~~-g----~~~v~gvD~s~~~l~~ar~~~------------------~~-----~g- 211 (253)
.-+|+..||+||- +++.+.+. + .-+|+|+|+|+.+|+.|++-. .. .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3699999999996 34444442 1 127999999999999998742 00 01
Q ss_pred ------C-CceEEEEeccCCCcC--CCCccEEEEcccccee
Q 025428 212 ------F-SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI 243 (253)
Q Consensus 212 ------~-~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~i 243 (253)
+ ..|+|.+.|+.+.++ .+.||+|+|.++|.|+
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF 236 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF 236 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC
Confidence 1 248999999988543 4889999999999876
No 230
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.29 E-value=0.00039 Score=64.78 Aligned_cols=61 Identities=30% Similarity=0.459 Sum_probs=53.4
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~ 226 (253)
..|||||+|||.++...++.|+..|++++.-.-|.+.|++...++|.+ +|+++.---.+..
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~ 129 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK 129 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence 479999999999999999999889999999999999999999999986 5888765554443
No 231
>PHA01634 hypothetical protein
Probab=97.26 E-value=0.0017 Score=51.08 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~ 212 (253)
.+++|+|||.+.|..+++++-+|++.|++++.++...+..+++++.+.+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI 76 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI 76 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence 6789999999999999999999999999999999999999998877644
No 232
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.23 E-value=0.00041 Score=62.87 Aligned_cols=84 Identities=18% Similarity=0.152 Sum_probs=65.3
Q ss_pred hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHH-------HHHHHHHhcCCC-c-eEEEEeccCC
Q 025428 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN-------LAQSLANRDGFS-C-IKFLVDDVLD 224 (253)
Q Consensus 154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~-------~ar~~~~~~g~~-~-i~~~~~D~~~ 224 (253)
.+........+++.|+|--.|||.++...+..|+ .|+|.||+-.|+. ..+.|++..|.. . +.++.+|..+
T Consensus 198 li~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn 276 (421)
T KOG2671|consen 198 LIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN 276 (421)
T ss_pred HHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence 3334445557899999999999999999999987 9999999999987 345677777743 2 7888999988
Q ss_pred CcCC--CCccEEEEcc
Q 025428 225 TKLE--RQFQLVMDKG 238 (253)
Q Consensus 225 ~~~~--~~fD~Vi~~~ 238 (253)
.+.- -.||.|+|..
T Consensus 277 ~~~rsn~~fDaIvcDP 292 (421)
T KOG2671|consen 277 PPLRSNLKFDAIVCDP 292 (421)
T ss_pred cchhhcceeeEEEeCC
Confidence 7653 5677777643
No 233
>PRK00536 speE spermidine synthase; Provisional
Probab=97.19 E-value=0.0018 Score=57.23 Aligned_cols=73 Identities=15% Similarity=0.023 Sum_probs=55.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--CCC--ceEEEEeccCCCcCCCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFS--CIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~--~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
+..++||=||.|.|..++.++++. .+|+.|||++++++.+++-+... +++ +++++. .+.+. ..++||+||...
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~-~~~~fDVIIvDs 147 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDL-DIKKYDLIICLQ 147 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhc-cCCcCCEEEEcC
Confidence 456899999999999999999995 49999999999999999954321 233 566665 22211 236899999874
No 234
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=97.17 E-value=0.00013 Score=64.52 Aligned_cols=81 Identities=17% Similarity=0.164 Sum_probs=64.4
Q ss_pred hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCcCC-CCc
Q 025428 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKLE-RQF 231 (253)
Q Consensus 154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~~~-~~f 231 (253)
...+++.....+..+||+|||+|..+..- ....++|+|++...+..+++. +. ....+|+..+|+. .+|
T Consensus 35 ~v~qfl~~~~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~ 104 (293)
T KOG1331|consen 35 MVRQFLDSQPTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESF 104 (293)
T ss_pred HHHHHHhccCCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCcc
Confidence 34455555567889999999999875433 233799999999999888763 44 6888999999886 899
Q ss_pred cEEEEccccceec
Q 025428 232 QLVMDKGTLDAIG 244 (253)
Q Consensus 232 D~Vi~~~~l~~i~ 244 (253)
|.+++..++||+.
T Consensus 105 d~~lsiavihhls 117 (293)
T KOG1331|consen 105 DAALSIAVIHHLS 117 (293)
T ss_pred ccchhhhhhhhhh
Confidence 9999999999983
No 235
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0011 Score=57.40 Aligned_cols=73 Identities=18% Similarity=0.171 Sum_probs=54.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC---CCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~---~~~fD~Vi~~~ 238 (253)
.++..+||+|+.||.++..+..+|+++|+++|..-+.+..--++ . ++ +.+...|++.+.. .+..|++++.-
T Consensus 78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv 152 (245)
T COG1189 78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV 152 (245)
T ss_pred CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence 57899999999999999999999999999999988766543332 1 23 4556667776643 25678888765
Q ss_pred cc
Q 025428 239 TL 240 (253)
Q Consensus 239 ~l 240 (253)
.|
T Consensus 153 SF 154 (245)
T COG1189 153 SF 154 (245)
T ss_pred eh
Confidence 44
No 236
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=97.08 E-value=0.0013 Score=55.96 Aligned_cols=71 Identities=17% Similarity=0.179 Sum_probs=41.6
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF 231 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f 231 (253)
..+++.+.+.++...|-|+|||.+.++..+. .+. .|..+|+-. .|-.+..+|+...|++ ++.
T Consensus 61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva---------------~n~~Vtacdia~vPL~~~sv 123 (219)
T PF05148_consen 61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA---------------PNPRVTACDIANVPLEDESV 123 (219)
T ss_dssp HHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TTS-S--TT-E
T ss_pred HHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC---------------CCCCEEEecCccCcCCCCce
Confidence 3445555555567899999999999997764 324 799999865 2335788999999987 899
Q ss_pred cEEEEcccc
Q 025428 232 QLVMDKGTL 240 (253)
Q Consensus 232 D~Vi~~~~l 240 (253)
|++++.-.|
T Consensus 124 Dv~VfcLSL 132 (219)
T PF05148_consen 124 DVAVFCLSL 132 (219)
T ss_dssp EEEEEES--
T ss_pred eEEEEEhhh
Confidence 999985443
No 237
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.01 E-value=0.0013 Score=56.68 Aligned_cols=79 Identities=14% Similarity=0.347 Sum_probs=59.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-CCCc-eEEEEeccCCCcC------CCCccE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSC-IKFLVDDVLDTKL------ERQFQL 233 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~-i~~~~~D~~~~~~------~~~fD~ 233 (253)
++.++||||.|.-++=-.+.-+ |+ +.+|.|+++..+..|+.++..+ ++.+ |+++..--....+ .+.||+
T Consensus 78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~ 156 (292)
T COG3129 78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA 156 (292)
T ss_pred CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence 5669999999988775555544 66 8999999999999999999887 6653 7766543222222 368999
Q ss_pred EEEcccccee
Q 025428 234 VMDKGTLDAI 243 (253)
Q Consensus 234 Vi~~~~l~~i 243 (253)
++|+..||.-
T Consensus 157 tlCNPPFh~s 166 (292)
T COG3129 157 TLCNPPFHDS 166 (292)
T ss_pred EecCCCcchh
Confidence 9999999863
No 238
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.00 E-value=0.0032 Score=53.84 Aligned_cols=76 Identities=17% Similarity=0.164 Sum_probs=63.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
..+.++.||||=-|++..++.+.+ ...+++.|+++..++.|.++++++++. .++..++|....... ..+|+|+..|
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 355679999999999999999984 458999999999999999999999886 599999998654333 5799988754
No 239
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.99 E-value=0.0035 Score=53.25 Aligned_cols=67 Identities=19% Similarity=0.203 Sum_probs=52.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--------C-CCc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------E-RQF 231 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--------~-~~f 231 (253)
.++..|+|+|+-.|.++..++++... .|+|+|+.|- ..+.++.++++|+++... . .++
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~ 112 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPV 112 (205)
T ss_pred cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence 56789999999999999999998322 5999999883 223579999999988642 2 457
Q ss_pred cEEEEcccc
Q 025428 232 QLVMDKGTL 240 (253)
Q Consensus 232 D~Vi~~~~l 240 (253)
|+|++...=
T Consensus 113 DvV~sD~ap 121 (205)
T COG0293 113 DVVLSDMAP 121 (205)
T ss_pred ceEEecCCC
Confidence 999986643
No 240
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.97 E-value=0.0032 Score=57.17 Aligned_cols=81 Identities=17% Similarity=0.176 Sum_probs=56.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEE--EEeccCCC----cC---C
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDT----KL---E 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~----g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~--~~~D~~~~----~~---~ 228 (253)
.++..|+|+|||+|.-+..|.+. + ....+++|+|.++|+.+.+++....++++++ +++|+.+. +. .
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence 45668999999999987665543 1 2379999999999999999988445555544 88988653 11 2
Q ss_pred CCccEEEEcc-cccee
Q 025428 229 RQFQLVMDKG-TLDAI 243 (253)
Q Consensus 229 ~~fD~Vi~~~-~l~~i 243 (253)
....+++.-| ++..+
T Consensus 155 ~~~r~~~flGSsiGNf 170 (319)
T TIGR03439 155 SRPTTILWLGSSIGNF 170 (319)
T ss_pred CCccEEEEeCccccCC
Confidence 3456776655 55443
No 241
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=96.96 E-value=0.0034 Score=55.58 Aligned_cols=79 Identities=19% Similarity=0.280 Sum_probs=59.0
Q ss_pred CCEEEEEcCCCcH----HHHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHH-----H-h---------------cC--
Q 025428 165 SWSVLDIGTGNGL----LLQELSKQG-----F-SDLTGVDYSEDAINLAQSLA-----N-R---------------DG-- 211 (253)
Q Consensus 165 ~~~VLDiGcGtG~----~~~~la~~g-----~-~~v~gvD~s~~~l~~ar~~~-----~-~---------------~g-- 211 (253)
.-+|+-+||+||- +++.+.+.+ . -+|+|+|||..+|+.|+.-. . + .|
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5699999999996 444444442 1 28999999999999998621 1 0 01
Q ss_pred -----C-CceEEEEeccCCCc-CCCCccEEEEcccccee
Q 025428 212 -----F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAI 243 (253)
Q Consensus 212 -----~-~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~i 243 (253)
+ ..|.|...|+.... +.+.||+|+|..||-++
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF 215 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF 215 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee
Confidence 1 24788888988877 66889999999999876
No 242
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=96.88 E-value=0.0014 Score=60.61 Aligned_cols=84 Identities=21% Similarity=0.186 Sum_probs=71.9
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
...++..++|+|||.|.....++..+...++|+|+++.-+.++.......++.+ ..++.+|+.+.+++ +.||.+-+..
T Consensus 107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld 186 (364)
T KOG1269|consen 107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE 186 (364)
T ss_pred cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence 445666899999999999999999976799999999999999988887777764 66789999999886 8999999988
Q ss_pred ccceec
Q 025428 239 TLDAIG 244 (253)
Q Consensus 239 ~l~~i~ 244 (253)
+.+|+.
T Consensus 187 ~~~~~~ 192 (364)
T KOG1269|consen 187 VVCHAP 192 (364)
T ss_pred ecccCC
Confidence 888763
No 243
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=96.73 E-value=0.0033 Score=57.62 Aligned_cols=74 Identities=30% Similarity=0.387 Sum_probs=59.7
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHH--h-c--CC--CceEEEEeccCCCcC--CCCcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLAN--R-D--GF--SCIKFLVDDVLDTKL--ERQFQ 232 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~--~-~--g~--~~i~~~~~D~~~~~~--~~~fD 232 (253)
+.-.+||-+|.|.|.-+..+.+.+ ..+++-+|.+|.||+.++++.. . | .+ ++++++..|+.++.- .+.||
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 445699999999999999999994 7899999999999999995432 1 1 12 258999999988743 27899
Q ss_pred EEEE
Q 025428 233 LVMD 236 (253)
Q Consensus 233 ~Vi~ 236 (253)
+||.
T Consensus 368 ~vIV 371 (508)
T COG4262 368 VVIV 371 (508)
T ss_pred EEEE
Confidence 9985
No 244
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.0036 Score=50.48 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=56.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~ 228 (253)
.+..+.+|+|+|.|++-...++.|....+|+++++-.+..+|-.+-+.|.. ...|+.-|+....+.
T Consensus 71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 455789999999999999999998669999999999999999988888776 477888888776543
No 245
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.69 E-value=0.0047 Score=59.32 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=68.5
Q ss_pred cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccC
Q 025428 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVL 223 (253)
Q Consensus 150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g----~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~ 223 (253)
++...+++++.. .+..+|+|..||+|.++....+. + ...++|.|+++.....|+.++-..|+. ++...++|-.
T Consensus 173 ~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl 251 (489)
T COG0286 173 EVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL 251 (489)
T ss_pred HHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence 445555555554 45569999999999998877765 2 136899999999999999999888886 4677777765
Q ss_pred CCcC-----C-CCccEEEEccccc
Q 025428 224 DTKL-----E-RQFQLVMDKGTLD 241 (253)
Q Consensus 224 ~~~~-----~-~~fD~Vi~~~~l~ 241 (253)
.-+. . ++||.|+++..+.
T Consensus 252 ~~~~~~~~~~~~~~D~viaNPPf~ 275 (489)
T COG0286 252 SNPKHDDKDDKGKFDFVIANPPFS 275 (489)
T ss_pred cCCcccccCCccceeEEEeCCCCC
Confidence 5542 2 6799999988765
No 246
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.68 E-value=0.012 Score=51.16 Aligned_cols=76 Identities=25% Similarity=0.271 Sum_probs=46.9
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH---HHHhcC-C-----CceEEEEeccCCCcC--CCCccEE
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS---LANRDG-F-----SCIKFLVDDVLDTKL--ERQFQLV 234 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~---~~~~~g-~-----~~i~~~~~D~~~~~~--~~~fD~V 234 (253)
.+|||.-+|-|.-++.++..|+ +|++++.|+-+....+. ++.... . .+|+++++|..++.. .++||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 4999999999999999998887 89999999976544443 333221 1 269999999988632 4899999
Q ss_pred EEccccce
Q 025428 235 MDKGTLDA 242 (253)
Q Consensus 235 i~~~~l~~ 242 (253)
.....|.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 98776654
No 247
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.57 E-value=0.008 Score=55.93 Aligned_cols=90 Identities=12% Similarity=0.006 Sum_probs=73.5
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---C
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L 227 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~ 227 (253)
+.+.-+...+.++.+|||+++-.|.-+.++|.. +-..|++.|.+.+-+...+.++.+.|+.|..+.+.|..+++ +
T Consensus 230 S~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~ 309 (460)
T KOG1122|consen 230 SFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF 309 (460)
T ss_pred ccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence 334444556678999999999999988888876 33379999999999999999999999999889999998775 3
Q ss_pred CCCccEEEEccccce
Q 025428 228 ERQFQLVMDKGTLDA 242 (253)
Q Consensus 228 ~~~fD~Vi~~~~l~~ 242 (253)
+++||-|+......-
T Consensus 310 ~~~fDRVLLDAPCSG 324 (460)
T KOG1122|consen 310 PGSFDRVLLDAPCSG 324 (460)
T ss_pred CcccceeeecCCCCC
Confidence 468999998766555
No 248
>PRK11524 putative methyltransferase; Provisional
Probab=96.54 E-value=0.0073 Score=53.82 Aligned_cols=46 Identities=15% Similarity=0.070 Sum_probs=42.1
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~ 209 (253)
.++..|||..||+|..+....+.|- +.+|+|++++.++.|++|+..
T Consensus 207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 5789999999999999999999865 999999999999999999753
No 249
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.51 E-value=0.0074 Score=53.60 Aligned_cols=71 Identities=17% Similarity=0.188 Sum_probs=56.1
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEcccccee
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI 243 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l~~i 243 (253)
+++|+.||.|.+..-+...|+..+.++|+++.+++..+.|... .++++|+.++.. ...+|+++.......+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6999999999999999988988899999999999988887531 156677777653 3568999886655433
No 250
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.50 E-value=0.0016 Score=58.05 Aligned_cols=73 Identities=12% Similarity=0.088 Sum_probs=62.6
Q ss_pred CCCEEEEEcCCCcHHHH-HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEE
Q 025428 164 SSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~-~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~ 236 (253)
.+..|+|+-+|-|++++ ++...|++.|+++|.+|..++-.|++++.+++. .+..+.+|.+...+....|-|..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL 268 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL 268 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence 45789999999999999 788889999999999999999999999998875 47788888888766666776654
No 251
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.41 E-value=0.0088 Score=53.19 Aligned_cols=74 Identities=30% Similarity=0.417 Sum_probs=46.0
Q ss_pred CCEEEEEcCCCc-HHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHH-hcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 165 SWSVLDIGTGNG-LLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 165 ~~~VLDiGcGtG-~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~-~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
..+|+=||||.= ..++.++++ +. ..|+++|+++++++.+++..+ ..|+. +++|+.+|..+...+ ..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 359999999954 445556554 32 379999999999999999877 44554 599999999887655 7899998744
No 252
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.40 E-value=0.025 Score=49.21 Aligned_cols=75 Identities=20% Similarity=0.227 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---CCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~~fD~Vi~~~ 238 (253)
..+++||=+|=.--.-.........++|+.+|+++.+|+..++.+++.|++ |+.++.|+++..++ ++||+++...
T Consensus 43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP 120 (243)
T PF01861_consen 43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP 120 (243)
T ss_dssp STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC
Confidence 578899999954433222222234569999999999999999999999985 99999999986433 8999999864
No 253
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=96.34 E-value=0.0081 Score=50.54 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=35.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~ 205 (253)
.++..|||..||+|..+......|. +.+|+|++++.++.|++
T Consensus 190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4789999999999999999999965 89999999999999874
No 254
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.26 E-value=0.032 Score=50.05 Aligned_cols=75 Identities=12% Similarity=0.088 Sum_probs=62.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-CCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-RQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-~~fD~V 234 (253)
.+++..||.--|.|..+..+.++. ..+++|+|.++.+|+.|++++...+ .++.++++++.++.. . +++|-|
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi 100 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI 100 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence 567899999999999999999983 2479999999999999999988765 489999999877642 1 477777
Q ss_pred EEcc
Q 025428 235 MDKG 238 (253)
Q Consensus 235 i~~~ 238 (253)
+..-
T Consensus 101 L~DL 104 (314)
T COG0275 101 LLDL 104 (314)
T ss_pred EEec
Confidence 7644
No 255
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.25 E-value=0.0089 Score=51.07 Aligned_cols=45 Identities=27% Similarity=0.388 Sum_probs=34.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHH
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
...++.|.+||.|.++..+.-. .-..|+|.|+++++|+.|++|+.
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3459999999999998877654 23389999999999999999874
No 256
>PRK13699 putative methylase; Provisional
Probab=96.23 E-value=0.018 Score=49.76 Aligned_cols=47 Identities=19% Similarity=0.096 Sum_probs=42.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~ 210 (253)
.++..|||..||+|..+....+.|. +.+|+|++++..+.+.++++..
T Consensus 162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence 4788999999999999999998866 9999999999999999988653
No 257
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.21 E-value=0.0085 Score=55.67 Aligned_cols=73 Identities=21% Similarity=0.215 Sum_probs=57.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCc--CCCCccEEEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~--~~~~fD~Vi~ 236 (253)
...+|||.=+|+|.=+++.+.. +..+|+.-|+|+++++..++|++.+++.. +++.+.|+..+- ....||+|=.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl 127 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL 127 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence 3458999999999999999987 55699999999999999999999999975 889999987764 3578888754
No 258
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=96.19 E-value=0.014 Score=53.19 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=59.6
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i 243 (253)
-...+|+|.|.|+++..+..+ +.++-+++....-+-.++..+. . .|+.+-+|..+- .| +-|+|++..+|||.
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P-~~daI~mkWiLhdw 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP-KGDAIWMKWILHDW 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence 478999999999999999996 7789999999988877777654 3 378888888876 33 34699999999997
No 259
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=96.17 E-value=0.00046 Score=58.54 Aligned_cols=42 Identities=17% Similarity=0.337 Sum_probs=37.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~ 206 (253)
...++||+|+|.|.++..++.. +.+|++.+.|..|..+.+++
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk 153 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK 153 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence 4479999999999999999998 88999999999999877664
No 260
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.15 E-value=0.0058 Score=46.57 Aligned_cols=33 Identities=33% Similarity=0.557 Sum_probs=28.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCH
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~ 197 (253)
+....+|||||+|.+.-.|...|+ ...|+|.-.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~ 90 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR 90 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence 456899999999999999999998 899999743
No 261
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=96.12 E-value=0.011 Score=52.05 Aligned_cols=68 Identities=10% Similarity=0.132 Sum_probs=51.2
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF 231 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f 231 (253)
..+++.+..-.....|-|+|||-+.++. .. ...|.++|+-. .|-.++.+|+.+.|++ ++.
T Consensus 169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~sv 229 (325)
T KOG3045|consen 169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESV 229 (325)
T ss_pred HHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcc
Confidence 3445555554567799999999999887 22 33899999854 3567899999999986 899
Q ss_pred cEEEEccc
Q 025428 232 QLVMDKGT 239 (253)
Q Consensus 232 D~Vi~~~~ 239 (253)
|++++...
T Consensus 230 DvaV~CLS 237 (325)
T KOG3045|consen 230 DVAVFCLS 237 (325)
T ss_pred cEEEeeHh
Confidence 99997443
No 262
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.04 E-value=0.015 Score=52.58 Aligned_cols=82 Identities=13% Similarity=0.123 Sum_probs=58.3
Q ss_pred HHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-
Q 025428 155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L- 227 (253)
Q Consensus 155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~- 227 (253)
+++.+.. .++...||.--|.|.++..+++. +..+++|+|.++.+++.|++++...+ .++.++++++.++. .
T Consensus 12 vl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~ 89 (310)
T PF01795_consen 12 VLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN 89 (310)
T ss_dssp HHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred HHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence 3444442 57789999999999999999987 44699999999999999999876542 47999999998864 1
Q ss_pred C-CCccEEEEcc
Q 025428 228 E-RQFQLVMDKG 238 (253)
Q Consensus 228 ~-~~fD~Vi~~~ 238 (253)
. .++|.|+..-
T Consensus 90 ~~~~~dgiL~DL 101 (310)
T PF01795_consen 90 GINKVDGILFDL 101 (310)
T ss_dssp TTS-EEEEEEE-
T ss_pred CCCccCEEEEcc
Confidence 2 5788887643
No 263
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=95.96 E-value=0.038 Score=49.05 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=36.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~ 205 (253)
...+||-.|||.|+++..+|.+|+ .+.|.|.|--|+=..+-
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~f 96 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNF 96 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHH
Confidence 457999999999999999999999 99999999999754443
No 264
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=95.93 E-value=0.019 Score=50.18 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=52.9
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-C--------CCcEEEEeCCHHHHHHHHHHHHhc-----CC-CceEEEEeccCCCcCCC
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRD-----GF-SCIKFLVDDVLDTKLER 229 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g--------~~~v~gvD~s~~~l~~ar~~~~~~-----g~-~~i~~~~~D~~~~~~~~ 229 (253)
.-+|+++|.|+|.++.-+++. . ..+++-||+|+.+.+.-++++... .. .+|.+ ..++.+.+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 369999999999999888764 1 137999999999988888887652 12 24666 34554443
Q ss_pred CccEEEEccccceeccC
Q 025428 230 QFQLVMDKGTLDAIGLH 246 (253)
Q Consensus 230 ~fD~Vi~~~~l~~i~~~ 246 (253)
..-+|++|.+|+.+.++
T Consensus 95 ~~~~iiaNE~~DAlP~~ 111 (252)
T PF02636_consen 95 FPGFIIANELFDALPVD 111 (252)
T ss_dssp CCEEEEEESSGGGS--E
T ss_pred CCEEEEEeeehhcCcee
Confidence 45578889999887653
No 265
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=95.93 E-value=0.0053 Score=58.32 Aligned_cols=71 Identities=17% Similarity=0.165 Sum_probs=47.0
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEE---eCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gv---D~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~ 241 (253)
..+||+|||+|.++.+|.+++. .++.+ |..+..++.|.++ |+.-+--+ .--..+|++ +.||+|-|..++.
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Ccchhhhh-hccccccCCccchhhhhcccccc
Confidence 4899999999999999999965 23222 4445566666654 54321111 112456766 8999999887765
Q ss_pred e
Q 025428 242 A 242 (253)
Q Consensus 242 ~ 242 (253)
.
T Consensus 193 ~ 193 (506)
T PF03141_consen 193 P 193 (506)
T ss_pred c
Confidence 3
No 266
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=95.83 E-value=0.013 Score=49.70 Aligned_cols=62 Identities=18% Similarity=0.254 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEEeccCCC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDT 225 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g-------~~~i~~~~~D~~~~ 225 (253)
+.-.+.|||||-|.++..|+.. +-.-+.|++|--..-+..+++++..+ +.|+.++..+....
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~ 129 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF 129 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence 4457999999999999999998 33478899998888888888876554 55788887777654
No 267
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.80 E-value=0.022 Score=52.27 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=57.0
Q ss_pred CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEE
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLV 234 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~V 234 (253)
..+|||.-+|||.=+++++.. +..+|+.-|+||++++.+++|++.|...+...++.|+..+-.. ..||+|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~I 125 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVI 125 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEE
Confidence 679999999999999999987 4448999999999999999999998555677777777665332 556655
No 268
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=95.43 E-value=0.028 Score=48.10 Aligned_cols=62 Identities=19% Similarity=0.254 Sum_probs=46.8
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC----CCccEEEEccccc
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVMDKGTLD 241 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~----~~fD~Vi~~~~l~ 241 (253)
-++|||||=+......-... + .|+.||+++ .+-.+.+.|+.+.|.+ ++||+|.+.-||.
T Consensus 53 lrlLEVGals~~N~~s~~~~-f-dvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN 115 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTSGW-F-DVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN 115 (219)
T ss_pred ceEEeecccCCCCcccccCc-e-eeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence 69999999755544333222 4 799999987 2446788899888753 7899999999999
Q ss_pred eec
Q 025428 242 AIG 244 (253)
Q Consensus 242 ~i~ 244 (253)
++.
T Consensus 116 fVP 118 (219)
T PF11968_consen 116 FVP 118 (219)
T ss_pred eCC
Confidence 984
No 269
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.08 E-value=0.0071 Score=45.31 Aligned_cols=69 Identities=29% Similarity=0.354 Sum_probs=24.3
Q ss_pred EEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CC-CCccEEEEcc
Q 025428 169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LE-RQFQLVMDKG 238 (253)
Q Consensus 169 LDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~-~~fD~Vi~~~ 238 (253)
|+|||..|..+..+++. +..+++++|..+. .+..++.+++.++. ++++++++..+.. +. +++|+++..+
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg 77 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG 77 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence 68999999998888764 2137999999995 44444444444444 6999999997652 23 7899999765
No 270
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=94.91 E-value=0.11 Score=46.04 Aligned_cols=80 Identities=18% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCc--HHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-----CCcc
Q 025428 164 SSWSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-----RQFQ 232 (253)
Q Consensus 164 ~~~~VLDiGcGtG--~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-----~~fD 232 (253)
.-...||||||-- ...-.+++. ...+|+-+|+++-.+..++..+..+.-....++++|+.+.. +. +-+|
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 3468999999932 233444443 34499999999999999999887653223889999998853 11 3334
Q ss_pred -----EEEEcccccee
Q 025428 233 -----LVMDKGTLDAI 243 (253)
Q Consensus 233 -----~Vi~~~~l~~i 243 (253)
.|++.++||++
T Consensus 148 ~~rPVavll~~vLh~v 163 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFV 163 (267)
T ss_dssp TTS--EEEECT-GGGS
T ss_pred CCCCeeeeeeeeeccC
Confidence 58889999998
No 271
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=94.86 E-value=0.052 Score=48.34 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=53.8
Q ss_pred EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEccccce
Q 025428 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDA 242 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l~~ 242 (253)
+++|+.||.|.+..-|...|+..+.++|+++.+++.-+.|.. ....+|+.++.. ++.+|+++......-
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~ 73 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG 73 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence 699999999999999999998889999999999988888753 788899988863 225898887554443
No 272
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=94.61 E-value=0.35 Score=41.67 Aligned_cols=73 Identities=16% Similarity=0.245 Sum_probs=52.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~ 236 (253)
.++.+||-+|..+|.....++.- | -..|++++.|+...+..-..+++. +||--+..|+..... -+.+|+|++
T Consensus 72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence 57889999999999999999987 4 338999999996655444444333 589899999987541 268899987
Q ss_pred c
Q 025428 237 K 237 (253)
Q Consensus 237 ~ 237 (253)
.
T Consensus 150 D 150 (229)
T PF01269_consen 150 D 150 (229)
T ss_dssp E
T ss_pred c
Confidence 4
No 273
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.40 E-value=0.032 Score=52.16 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCC
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT 225 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~ 225 (253)
.++..|.|+.||.|-+...++.+++ .|++-|.++++++..+.+++.+.+. +|+.+..|+..+
T Consensus 248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 5778999999999999999999975 9999999999999999999988775 488888887665
No 274
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.15 Score=46.80 Aligned_cols=79 Identities=13% Similarity=0.184 Sum_probs=53.0
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQL 233 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g---------~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~ 233 (253)
..-.++++|.|+|.++.-+++.. ..++.-|++|++..+.-+++++... . .+......+. +++. .=+
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~--~~~~~~~~e~-~p~~~~~i 152 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-D--LIRWVEWVED-LPKKFPGI 152 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-c--chhHHHHHHh-ccccCceE
Confidence 44589999999999987776541 3489999999998888887775432 1 1111122222 2344 456
Q ss_pred EEEccccceeccC
Q 025428 234 VMDKGTLDAIGLH 246 (253)
Q Consensus 234 Vi~~~~l~~i~~~ 246 (253)
|++|..|+.+.++
T Consensus 153 ~~~NElfDAlPv~ 165 (370)
T COG1565 153 VVSNELFDALPVE 165 (370)
T ss_pred EEechhhccccce
Confidence 7788888888664
No 275
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.74 E-value=0.12 Score=46.71 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=53.4
Q ss_pred EEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEcccccee
Q 025428 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAI 243 (253)
Q Consensus 168 VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i 243 (253)
|+|+.||.|.+..-|...|+.-+.++|+++.+++.-+.|.. + .++++|+.++... ..+|+++.......+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 68999999999999988898677789999999998887752 2 3456788776532 457888876554443
No 276
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.57 E-value=0.18 Score=46.71 Aligned_cols=53 Identities=26% Similarity=0.266 Sum_probs=40.9
Q ss_pred hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428 154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~ 206 (253)
+++..+.....-..|+|+|.|.|.++.+++-+-.-.|.+||-|+...+.|++.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 44444555556679999999999999999877223999999998877777653
No 277
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=93.32 E-value=0.21 Score=39.96 Aligned_cols=49 Identities=12% Similarity=0.193 Sum_probs=37.2
Q ss_pred cEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--C-CCccEEEEc
Q 025428 189 DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--E-RQFQLVMDK 237 (253)
Q Consensus 189 ~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--~-~~fD~Vi~~ 237 (253)
+|+|+||.+++|+.++++++..++. ++++++..-.++.. + +++|+++.|
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence 5899999999999999999999886 59999988877653 3 379998873
No 278
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.87 E-value=0.38 Score=37.16 Aligned_cols=61 Identities=25% Similarity=0.465 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEE
Q 025428 164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~ 236 (253)
..++|+++|.|-= ..+..|+++|+ .++++|+++. ++ + ..++++..|+.+.... ...|+|.+
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceee
Confidence 4459999998854 35778888888 9999999986 11 1 3578999999987654 56777776
No 279
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=92.85 E-value=0.27 Score=44.74 Aligned_cols=74 Identities=14% Similarity=0.190 Sum_probs=58.6
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---C-CccEEEEcccc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTL 240 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~-~fD~Vi~~~~l 240 (253)
..+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|... -.++..|+.+.... . .+|+++.....
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPC 77 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPC 77 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence 358999999999999999999998889999999999888877532 46777787766532 2 78999886655
Q ss_pred cee
Q 025428 241 DAI 243 (253)
Q Consensus 241 ~~i 243 (253)
..+
T Consensus 78 Q~F 80 (328)
T COG0270 78 QDF 80 (328)
T ss_pred cch
Confidence 554
No 280
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=92.81 E-value=0.51 Score=40.67 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=58.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CCCCccEEEEc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK 237 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~~~fD~Vi~~ 237 (253)
.++.+||.||-|-|.+...+.+.....-+-|+..++.++..|...-... .|+..+.+-+.+.. .++.||-|+-.
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yD 176 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYD 176 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEee
Confidence 4789999999999999999998866677889999999998888653332 37888888776653 34779988753
No 281
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=92.69 E-value=0.19 Score=39.46 Aligned_cols=61 Identities=25% Similarity=0.500 Sum_probs=36.8
Q ss_pred CCCEEEEEcCCCc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEE
Q 025428 164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMD 236 (253)
Q Consensus 164 ~~~~VLDiGcGtG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~ 236 (253)
...+|+++|-|.= ..+..|.++|+ .|+++|+++. ++. ..+.++..|+.+..+. ...|+|.+
T Consensus 13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcCCcEEEE
Confidence 4459999999964 45777777787 9999999996 111 2568999999987654 66788876
No 282
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.59 E-value=0.036 Score=45.47 Aligned_cols=78 Identities=15% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEeccCCCc---CCCCccEEE
Q 025428 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVDDVLDTK---LERQFQLVM 235 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~---g~~~i~~~~~D~~~~~---~~~~fD~Vi 235 (253)
.+.+||++|.| ||..++.+|.. ....|...|-+++.++..++....+ +++.+..+.-++.... ...+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 56799999999 66666777666 4458999999999999888876554 3334433333332221 125899999
Q ss_pred Eccccc
Q 025428 236 DKGTLD 241 (253)
Q Consensus 236 ~~~~l~ 241 (253)
+..++-
T Consensus 109 aADClF 114 (201)
T KOG3201|consen 109 AADCLF 114 (201)
T ss_pred eccchh
Confidence 977553
No 283
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=92.57 E-value=0.56 Score=41.10 Aligned_cols=78 Identities=14% Similarity=0.123 Sum_probs=49.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-----cCCC-ceEEEEeccCCCcC----CCC-cc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----DGFS-CIKFLVDDVLDTKL----ERQ-FQ 232 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-----~g~~-~i~~~~~D~~~~~~----~~~-fD 232 (253)
+..+||++|+|||..+..++......|+..|...-+... +.+... +++. ++.+...++.+.+. ... ||
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L-~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENL-KFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHH-HHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 456899999999999999998755589988886643332 222222 2222 45555555555431 233 89
Q ss_pred EEEEccccce
Q 025428 233 LVMDKGTLDA 242 (253)
Q Consensus 233 ~Vi~~~~l~~ 242 (253)
+|+...++-.
T Consensus 165 lilasDvvy~ 174 (248)
T KOG2793|consen 165 LILASDVVYE 174 (248)
T ss_pred EEEEeeeeec
Confidence 9998766543
No 284
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=91.96 E-value=0.11 Score=46.21 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~ 201 (253)
..+++|||+|||.|.-.+.....|...+...|+|.+.++
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 467899999999999999999998679999999998873
No 285
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=91.79 E-value=0.24 Score=41.68 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=44.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCc---------CCCC
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ 230 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~---------~~~~ 230 (253)
.++.+|||+||..|.++....++ +...|.|||+-.- ..+..+.++++ |+.+.. +..+
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~ 136 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP 136 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence 57889999999999999998887 3347999998431 11223455555 555431 1256
Q ss_pred ccEEEEccc
Q 025428 231 FQLVMDKGT 239 (253)
Q Consensus 231 fD~Vi~~~~ 239 (253)
.|+|++...
T Consensus 137 VdvVlSDMa 145 (232)
T KOG4589|consen 137 VDVVLSDMA 145 (232)
T ss_pred ccEEEeccC
Confidence 788777554
No 286
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.77 E-value=0.38 Score=43.73 Aligned_cols=45 Identities=31% Similarity=0.388 Sum_probs=38.5
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
..+.+.+||=+|+| .|..+...|+. |+++|+.+|++++.|+.|++
T Consensus 166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 34678899999999 46666666666 88899999999999999998
No 287
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.23 E-value=0.76 Score=41.00 Aligned_cols=75 Identities=23% Similarity=0.344 Sum_probs=58.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---CCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~~fD~Vi~~~ 238 (253)
..++.|+=+| ---..++.++-.| .++|..+||++..|+...+-++..|+.|++.+.-|+.+..++ .+||+++...
T Consensus 151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDP 229 (354)
T COG1568 151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDP 229 (354)
T ss_pred cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCc
Confidence 4678899999 4344444444333 559999999999999999999999998899999999987432 7899988643
No 288
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=90.77 E-value=1.4 Score=37.67 Aligned_cols=72 Identities=15% Similarity=0.259 Sum_probs=55.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD 236 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~ 236 (253)
.++.+||=+|..+|.....++.- |...++|++.|+.+....-..+++. .||--+.+|+....- =+..|+|+.
T Consensus 75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~ 151 (231)
T COG1889 75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ 151 (231)
T ss_pred CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence 57889999999999999999987 5448999999998876665555443 478888888876531 156787776
No 289
>PRK10458 DNA cytosine methylase; Provisional
Probab=90.39 E-value=1.4 Score=42.30 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~ 226 (253)
.-+++|+.||.|.+..-+-..|+.-|.++|+++.+.+.-+.|... ..+...+.+|+.++.
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~ 147 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDIT 147 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCc
Confidence 459999999999999999888887788999999888877776421 112344556666653
No 290
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.49 E-value=0.38 Score=41.80 Aligned_cols=72 Identities=24% Similarity=0.286 Sum_probs=56.0
Q ss_pred CCEEEEEcCCCcHHHHHHHhc--C------CC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ--G------FS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------- 226 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~--g------~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-------- 226 (253)
-.+++|++...|.++..|.++ . .. .+++||+.+. .-++.+..+++|+....
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence 468999999999999999876 1 11 3999999772 23456888999998753
Q ss_pred CC-CCccEEEEccccceeccCC
Q 025428 227 LE-RQFQLVMDKGTLDAIGLHP 247 (253)
Q Consensus 227 ~~-~~fD~Vi~~~~l~~i~~~p 247 (253)
|. .+.|+|+|.+.-+..++|.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd 132 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHD 132 (294)
T ss_pred hCCCCccEEEeCCCCCcccccc
Confidence 34 5899999999888777764
No 291
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=89.30 E-value=0.47 Score=43.08 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=53.3
Q ss_pred EEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCC--------CcCCCCccEEEE
Q 025428 168 VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD--------TKLERQFQLVMD 236 (253)
Q Consensus 168 VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~--------~~~~~~fD~Vi~ 236 (253)
=+|||+|+-.+--.+... ++ ..+++|+....+..|+.+...++++ .+.+++..... ...+..||.++|
T Consensus 106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc 184 (419)
T KOG2912|consen 106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC 184 (419)
T ss_pred eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence 479999888776555544 44 7899999999999999999988876 36666553322 111245999999
Q ss_pred ccccce
Q 025428 237 KGTLDA 242 (253)
Q Consensus 237 ~~~l~~ 242 (253)
+..|..
T Consensus 185 NPPFfe 190 (419)
T KOG2912|consen 185 NPPFFE 190 (419)
T ss_pred CCchhh
Confidence 886643
No 292
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=89.10 E-value=1.6 Score=40.85 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=23.2
Q ss_pred eccCCCcCC-CCccEEEEccccceeccCCCC
Q 025428 220 DDVLDTKLE-RQFQLVMDKGTLDAIGLHPDG 249 (253)
Q Consensus 220 ~D~~~~~~~-~~fD~Vi~~~~l~~i~~~pd~ 249 (253)
|.+..-.+| ++.+++++...|||+.--|+.
T Consensus 151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~ 181 (386)
T PLN02668 151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPES 181 (386)
T ss_pred ccccccccCCCceEEEEeeccceecccCchh
Confidence 455554455 899999999999999876764
No 293
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.90 E-value=1.3 Score=33.28 Aligned_cols=57 Identities=18% Similarity=0.267 Sum_probs=40.5
Q ss_pred CCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428 173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD 236 (253)
Q Consensus 173 cGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~ 236 (253)
||.|.++..+++. +..+|+.+|.+++.++.+++. .+.++.||..+... . ...+.|++
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEE
Confidence 5667777777765 334899999999998888764 36799999988642 2 56777765
No 294
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.50 E-value=1.1 Score=41.65 Aligned_cols=71 Identities=14% Similarity=0.091 Sum_probs=59.5
Q ss_pred HHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226 (253)
Q Consensus 156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~ 226 (253)
...+..+.++.+|+|..|-.|.-+..++.. .-.++.|+|.+..-.+..++.+...|...++...+|+...+
T Consensus 205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~ 277 (413)
T KOG2360|consen 205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA 277 (413)
T ss_pred hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC
Confidence 344455577899999999999998888875 23489999999999999999999999888888899998853
No 295
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=87.89 E-value=4.1 Score=37.23 Aligned_cols=84 Identities=13% Similarity=0.158 Sum_probs=45.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc------------C------CCcEEEEeCCHHHHH-HHHH------HHHhcCCCc--eE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ------------G------FSDLTGVDYSEDAIN-LAQS------LANRDGFSC--IK 216 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~------------g------~~~v~gvD~s~~~l~-~ar~------~~~~~g~~~--i~ 216 (253)
+.-+|+|+||..|..++.+... + + +|+--|.-.+=-. +.+. .... ..+ +.
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~-~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEF-QVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EE-EEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCCCccHHHHHHhChhhhhccCC--CceEEEE
Confidence 4459999999999988777642 1 1 6777776332111 1111 1111 112 44
Q ss_pred EEEeccCCCcCC-CCccEEEEccccceeccCCCCC
Q 025428 217 FLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGP 250 (253)
Q Consensus 217 ~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~~~pd~~ 250 (253)
-+-+.+..-.+| ++.|++++..+|||+.-.|..-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l 127 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEEL 127 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCC
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCccc
Confidence 456777766666 8999999999999998777653
No 296
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=87.73 E-value=0.17 Score=48.26 Aligned_cols=75 Identities=19% Similarity=0.209 Sum_probs=60.5
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC-----CCCcc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-----ERQFQ 232 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~-----~~~fD 232 (253)
...++-+|||.=|+||.-++..++. |..+|++.|.++..++..+.|.+.++..+ ++..++|+..+-. ...||
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FD 185 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFD 185 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccc
Confidence 3356679999999999999999988 66699999999999999999999988765 6777777755421 25677
Q ss_pred EEE
Q 025428 233 LVM 235 (253)
Q Consensus 233 ~Vi 235 (253)
+|=
T Consensus 186 vID 188 (525)
T KOG1253|consen 186 VID 188 (525)
T ss_pred eEe
Confidence 664
No 297
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=87.40 E-value=2.2 Score=41.13 Aligned_cols=78 Identities=22% Similarity=0.304 Sum_probs=54.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc---C--CCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc-C--CCCccE
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-L--ERQFQL 233 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~---g--~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~-~--~~~fD~ 233 (253)
+...|.|..||+|.++....+. | ...++|-+....|...|+.++...+.. ......+|-...+ . ..+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 5578999999999998765432 2 136999999999999999987665542 2344455544322 2 256999
Q ss_pred EEEccccc
Q 025428 234 VMDKGTLD 241 (253)
Q Consensus 234 Vi~~~~l~ 241 (253)
|+++..+.
T Consensus 297 v~~NpPf~ 304 (501)
T TIGR00497 297 VVSNPPYS 304 (501)
T ss_pred EeecCCcc
Confidence 98877554
No 298
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=86.12 E-value=1.6 Score=40.24 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=38.3
Q ss_pred cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
...++.+||.+|||. |.++..+++. |..+++++|.++++++.+++.
T Consensus 181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 345678999999987 8888888887 554699999999999988875
No 299
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.80 E-value=2 Score=38.75 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=33.5
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+||=+||| .|.++..+++. |+.+|+++|.+++.++.+++.
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l 213 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM 213 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence 357788888875 45566666666 666799999999998888763
No 300
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=85.75 E-value=1 Score=38.33 Aligned_cols=60 Identities=18% Similarity=0.250 Sum_probs=34.5
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT 225 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~-----g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~ 225 (253)
+...|+++|.-.|.-+..+|+. +..+|+|||++-....... .+...+ ++|++++||..+.
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~ 97 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDP 97 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSST
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCH
Confidence 6689999999999999888763 3359999999543322111 111111 3799999999775
No 301
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=85.67 E-value=1.6 Score=39.95 Aligned_cols=44 Identities=34% Similarity=0.402 Sum_probs=37.1
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+|+=+||| .|.++..+++. |+++|+.+|.+++-++.|++.
T Consensus 167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~ 212 (350)
T COG1063 167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA 212 (350)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence 344599999999 57777777776 888999999999999999985
No 302
>PTZ00357 methyltransferase; Provisional
Probab=85.66 E-value=3 Score=41.84 Aligned_cols=71 Identities=14% Similarity=0.235 Sum_probs=48.8
Q ss_pred CEEEEEcCCCcHHHHHHHhc----CCC-cEEEEeCCHHHHHHHHHHHH-hcCCC--------ceEEEEeccCCCcCC---
Q 025428 166 WSVLDIGTGNGLLLQELSKQ----GFS-DLTGVDYSEDAINLAQSLAN-RDGFS--------CIKFLVDDVLDTKLE--- 228 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~----g~~-~v~gvD~s~~~l~~ar~~~~-~~g~~--------~i~~~~~D~~~~~~~--- 228 (253)
..|+=+|+|-|-+.....+. |.+ +|++|+.|+..+...+.+.. ..... .|+++..|++++..+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 36899999999986555443 333 89999999765544444432 12221 389999999998532
Q ss_pred ---------CCccEEEE
Q 025428 229 ---------RQFQLVMD 236 (253)
Q Consensus 229 ---------~~fD~Vi~ 236 (253)
+++|+||+
T Consensus 782 ~s~~~P~~~gKaDIVVS 798 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS 798 (1072)
T ss_pred ccccccccccccceehH
Confidence 37999987
No 303
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=85.51 E-value=1.5 Score=37.24 Aligned_cols=85 Identities=12% Similarity=0.100 Sum_probs=57.0
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc-CCC-cEEEEeCCHHHH----HHHHHH--HHhcCCCceEEEEeccCCCcCCCCcc
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAI----NLAQSL--ANRDGFSCIKFLVDDVLDTKLERQFQ 232 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~-~v~gvD~s~~~l----~~ar~~--~~~~g~~~i~~~~~D~~~~~~~~~fD 232 (253)
.++++.+|+|+--|.|.++..|+.. |.+ .|+++=..+... +..+.+ .+.....|.+.+-.+...+..++..|
T Consensus 45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d 124 (238)
T COG4798 45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD 124 (238)
T ss_pred ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence 3468899999999999999999987 432 666665444311 111111 12234457777777777777668899
Q ss_pred EEEEccccceecc
Q 025428 233 LVMDKGTLDAIGL 245 (253)
Q Consensus 233 ~Vi~~~~l~~i~~ 245 (253)
+++.+...|-++.
T Consensus 125 ~~~~~~~yhdmh~ 137 (238)
T COG4798 125 LVPTAQNYHDMHN 137 (238)
T ss_pred ccccchhhhhhhc
Confidence 9998777666543
No 304
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=85.37 E-value=0.59 Score=41.18 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=52.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC----------------------------Cc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC 214 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~----------------------------~~ 214 (253)
.++.++||||||.-.+-..-+..-+.+++..|+++..++..++-++..+. ..
T Consensus 55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~ 134 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA 134 (256)
T ss_dssp S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence 35679999999997765444444477999999999998876665543210 01
Q ss_pred e-EEEEeccCCCcC-------CCCccEEEEccccceec
Q 025428 215 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIG 244 (253)
Q Consensus 215 i-~~~~~D~~~~~~-------~~~fD~Vi~~~~l~~i~ 244 (253)
| +++..|+.+.++ +.+||+|++..+|+.+.
T Consensus 135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~ 172 (256)
T PF01234_consen 135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC 172 (256)
T ss_dssp EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence 3 477889987642 23599999999988763
No 305
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=84.57 E-value=3.6 Score=38.38 Aligned_cols=49 Identities=16% Similarity=-0.006 Sum_probs=37.8
Q ss_pred hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428 159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
+.+..++.+||-|.+|-...+-++... .++|++||+|+..+...+=+.+
T Consensus 30 aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA 78 (380)
T PF11899_consen 30 ALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA 78 (380)
T ss_pred HhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence 334468889999998877777776655 6699999999998887766543
No 306
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=84.32 E-value=3 Score=36.66 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=42.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~ 210 (253)
..+..|||.-+|+|..+......|- +++|+|++++-++.+.+++...
T Consensus 221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence 5788999999999999999988855 9999999999999999998754
No 307
>PRK08339 short chain dehydrogenase; Provisional
Probab=84.23 E-value=7.2 Score=33.73 Aligned_cols=74 Identities=12% Similarity=0.208 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C-CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E-RQ 230 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~-~~ 230 (253)
+++++|-.|++.|. ++..|++.|+ +|+.++.+++.++...+.+....-.++.++.+|+.+..- . +.
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 56788888876554 3455666677 899999998887776665543211368889999887531 1 45
Q ss_pred ccEEEEcc
Q 025428 231 FQLVMDKG 238 (253)
Q Consensus 231 fD~Vi~~~ 238 (253)
.|+++.+.
T Consensus 86 iD~lv~na 93 (263)
T PRK08339 86 PDIFFFST 93 (263)
T ss_pred CcEEEECC
Confidence 78777654
No 308
>PRK07904 short chain dehydrogenase; Provisional
Probab=83.92 E-value=5.8 Score=34.16 Aligned_cols=73 Identities=15% Similarity=0.198 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHH-HHHHHHHHHhcCCCceEEEEeccCCCc-----CC-----
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTK-----LE----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~-l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~----- 228 (253)
.+.+||-.|++ |.++..++ ++|..+|+.++.+++- ++.+.+.++..+..++.++.+|+.+.. ..
T Consensus 7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~ 85 (253)
T PRK07904 7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG 85 (253)
T ss_pred CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence 45678888874 44444444 4443389999998764 665555555544347899999987643 11
Q ss_pred CCccEEEEc
Q 025428 229 RQFQLVMDK 237 (253)
Q Consensus 229 ~~fD~Vi~~ 237 (253)
+..|+++.+
T Consensus 86 g~id~li~~ 94 (253)
T PRK07904 86 GDVDVAIVA 94 (253)
T ss_pred CCCCEEEEe
Confidence 468877754
No 309
>PRK08703 short chain dehydrogenase; Provisional
Probab=83.71 E-value=9.7 Score=32.05 Aligned_cols=59 Identities=14% Similarity=0.074 Sum_probs=38.8
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~ 224 (253)
+++++|-.|| +|.++.. ++++|. +|++++.++..++...+.+...+-..+.++..|+.+
T Consensus 5 ~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 5 SDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence 5578999985 4444444 444566 899999999877766665544332345677777754
No 310
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.34 E-value=7.2 Score=33.21 Aligned_cols=73 Identities=14% Similarity=0.142 Sum_probs=49.6
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|+ +|.++..++ ++|+ +|++++.++..++...+.+...+. ++.++.+|+.+... -
T Consensus 9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (255)
T PRK07523 9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEI 85 (255)
T ss_pred CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5678888885 555555544 4577 899999998877766666654443 57888899877421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 86 ~~~d~li~~ag 96 (255)
T PRK07523 86 GPIDILVNNAG 96 (255)
T ss_pred CCCCEEEECCC
Confidence 45788776553
No 311
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=83.13 E-value=2 Score=37.29 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=49.2
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~ 226 (253)
...-|++||.|.|.++..+...|..+...++++...+.-.+...+... .++.+.++|+..+.
T Consensus 50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~ 111 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK 111 (326)
T ss_pred ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence 567899999999999999999988899999999887776665554332 26778888887654
No 312
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=82.74 E-value=7.5 Score=33.38 Aligned_cols=83 Identities=11% Similarity=0.106 Sum_probs=52.2
Q ss_pred hHHHHhccCCCCCEEEEEcCCCcH----HHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCC-Cc
Q 025428 154 EPVEENDKYLSSWSVLDIGTGNGL----LLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-TK 226 (253)
Q Consensus 154 ~l~~~l~~~~~~~~VLDiGcGtG~----~~~~la~-~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~-~~ 226 (253)
+++..+..-..-+.++++.|+-|. +++..|. +-..++++|-..+..+...++.+...++.+ ++|+.++..+ +.
T Consensus 31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~ 110 (218)
T PF07279_consen 31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM 110 (218)
T ss_pred HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence 444444443455689999766442 3333333 323389999999988888888887777765 6999888533 22
Q ss_pred CC-CCccEEEE
Q 025428 227 LE-RQFQLVMD 236 (253)
Q Consensus 227 ~~-~~fD~Vi~ 236 (253)
.. ...|+++.
T Consensus 111 ~~~~~iDF~vV 121 (218)
T PF07279_consen 111 PGLKGIDFVVV 121 (218)
T ss_pred hhccCCCEEEE
Confidence 12 55676664
No 313
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=82.72 E-value=3.7 Score=34.58 Aligned_cols=33 Identities=30% Similarity=0.269 Sum_probs=26.2
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS 196 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s 196 (253)
...+||=+||| .|. ++..|+..|..+++.+|.+
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 56799999998 344 5667777798899999976
No 314
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.42 E-value=8.5 Score=32.78 Aligned_cols=75 Identities=12% Similarity=0.109 Sum_probs=51.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|-.|++.|. ++..|+++|+ +|+.++.+++.++...+.++..+ .++.++.+|+.+... -+
T Consensus 8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T PRK05867 8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG 85 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 56789988876553 3455556677 89999999888777766665544 367788899876421 14
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
+.|+++.+...
T Consensus 86 ~id~lv~~ag~ 96 (253)
T PRK05867 86 GIDIAVCNAGI 96 (253)
T ss_pred CCCEEEECCCC
Confidence 68888876543
No 315
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=82.28 E-value=5.9 Score=35.66 Aligned_cols=74 Identities=23% Similarity=0.263 Sum_probs=59.4
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E- 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~- 228 (253)
-.+..||-=|+|.|. ++..+|++|+ +++..|++++..+...+.+++.| ++.....|+.+... +
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 367899999998886 5788888877 89999999999988888887766 78888899877531 2
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.|.-
T Consensus 113 G~V~ILVNNAG 123 (300)
T KOG1201|consen 113 GDVDILVNNAG 123 (300)
T ss_pred CCceEEEeccc
Confidence 67888888763
No 316
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=82.08 E-value=10 Score=32.29 Aligned_cols=73 Identities=15% Similarity=0.118 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|-.|+ +|.++.. |+++|+ +|+.++.+++.++...+.++..+. ++.++.+|+.+... -
T Consensus 10 ~~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (256)
T PRK06124 10 AGQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEH 86 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 5678888885 4444444 445577 899999998877766665555443 57889999876421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
++.|.++.+..
T Consensus 87 ~~id~vi~~ag 97 (256)
T PRK06124 87 GRLDILVNNVG 97 (256)
T ss_pred CCCCEEEECCC
Confidence 45688776543
No 317
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=82.00 E-value=2.8 Score=36.14 Aligned_cols=45 Identities=16% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~ 209 (253)
...+++|+-||+|.++..+... ...|+.-|+++..+...+..++.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~~ 64 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLKN 64 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHhc
Confidence 5689999999999999999776 44899999999988888755543
No 318
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=81.79 E-value=8.9 Score=32.72 Aligned_cols=73 Identities=15% Similarity=0.156 Sum_probs=50.4
Q ss_pred CCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|=.| |+|.++..+++ +|+ +|+.++.+...++...+.+...+. ++.++.+|+.+... .
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~ 87 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERF 87 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888 56666666554 476 899999998877776666554432 67889999987431 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|.|+.+..
T Consensus 88 ~~id~vi~~ag 98 (259)
T PRK08213 88 GHVDILVNNAG 98 (259)
T ss_pred CCCCEEEECCC
Confidence 35788877643
No 319
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.77 E-value=7.8 Score=32.45 Aligned_cols=71 Identities=13% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC------
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE------ 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~------ 228 (253)
.+.++|-+|+ +|.++..++ ++|+ +|++++.++..+....+.+... .++.++.+|+.+.. +.
T Consensus 5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (237)
T PRK07326 5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAF 80 (237)
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567888884 666655554 4466 7999999987766665544332 36788999987642 11
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+.+|+|+...
T Consensus 81 ~~~d~vi~~a 90 (237)
T PRK07326 81 GGLDVLIANA 90 (237)
T ss_pred CCCCEEEECC
Confidence 3578887653
No 320
>PRK07102 short chain dehydrogenase; Provisional
Probab=81.71 E-value=7.9 Score=32.69 Aligned_cols=71 Identities=15% Similarity=0.071 Sum_probs=45.3
Q ss_pred CEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--------CCCccE
Q 025428 166 WSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQL 233 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--------~~~fD~ 233 (253)
+++|-.| |+|.++..++ ++|. +|++++.+++-.+...+.+...+-.++.++.+|+.+... ...+|+
T Consensus 2 ~~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~ 79 (243)
T PRK07102 2 KKILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI 79 (243)
T ss_pred cEEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence 3677677 4555555444 4466 899999998776655444433333478899999987531 134688
Q ss_pred EEEcc
Q 025428 234 VMDKG 238 (253)
Q Consensus 234 Vi~~~ 238 (253)
++.+.
T Consensus 80 vv~~a 84 (243)
T PRK07102 80 VLIAV 84 (243)
T ss_pred EEECC
Confidence 77543
No 321
>PRK06125 short chain dehydrogenase; Provisional
Probab=81.15 E-value=11 Score=32.11 Aligned_cols=74 Identities=14% Similarity=0.163 Sum_probs=48.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C--CCCccE
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L--ERQFQL 233 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~--~~~fD~ 233 (253)
.++++|=.|++.|. +...|+++|+ +|++++.+++.++...+.+....-.++.++..|+.+.. + -+..|+
T Consensus 6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~ 84 (259)
T PRK06125 6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI 84 (259)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence 46788888865442 2334555677 99999999987777666554432236788889987642 1 156788
Q ss_pred EEEcc
Q 025428 234 VMDKG 238 (253)
Q Consensus 234 Vi~~~ 238 (253)
++.+.
T Consensus 85 lv~~a 89 (259)
T PRK06125 85 LVNNA 89 (259)
T ss_pred EEECC
Confidence 77654
No 322
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=81.01 E-value=9.4 Score=32.33 Aligned_cols=75 Identities=13% Similarity=0.145 Sum_probs=49.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----------C-
Q 025428 163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----------L- 227 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----------~- 227 (253)
.+++++|=.|+ +|.++..++ +.|+ +|++++.++..++...+.+...+..++.++..|+.... .
T Consensus 10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 87 (247)
T PRK08945 10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE 87 (247)
T ss_pred cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence 46778898885 555555444 4466 99999999887766666555544446777777775321 0
Q ss_pred --CCCccEEEEccc
Q 025428 228 --ERQFQLVMDKGT 239 (253)
Q Consensus 228 --~~~fD~Vi~~~~ 239 (253)
-++.|.|+.+..
T Consensus 88 ~~~~~id~vi~~Ag 101 (247)
T PRK08945 88 EQFGRLDGVLHNAG 101 (247)
T ss_pred HHhCCCCEEEECCc
Confidence 146788887553
No 323
>PRK08862 short chain dehydrogenase; Provisional
Probab=80.97 E-value=9.4 Score=32.40 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-----C-C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L-----E-R 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~-----~-~ 229 (253)
+++++|=.|++.|. ++..|+++|+ +|+.++.+++.++...+.+...+. ++..+..|..+.. + . +
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFN 81 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence 46789999988876 5666777777 899999999988877766655543 4666777776542 0 1 3
Q ss_pred -CccEEEEcc
Q 025428 230 -QFQLVMDKG 238 (253)
Q Consensus 230 -~fD~Vi~~~ 238 (253)
..|+++.+.
T Consensus 82 ~~iD~li~na 91 (227)
T PRK08862 82 RAPDVLVNNW 91 (227)
T ss_pred CCCCEEEECC
Confidence 688888765
No 324
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.91 E-value=12 Score=31.84 Aligned_cols=73 Identities=12% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~- 228 (253)
.++++|=.|++ |.++. .|+++|+ +|++++.++..++...+.+...+ .++.++..|+.+... .
T Consensus 4 ~~k~vlItGa~-~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK07890 4 KGKVVVVSGVG-PGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERF 80 (258)
T ss_pred CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence 45678877764 44444 4555677 89999999987776666554444 267889999876421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+|+.+..
T Consensus 81 g~~d~vi~~ag 91 (258)
T PRK07890 81 GRVDALVNNAF 91 (258)
T ss_pred CCccEEEECCc
Confidence 45788877553
No 325
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=80.90 E-value=8.4 Score=30.28 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=49.6
Q ss_pred EEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC--HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (253)
Q Consensus 167 ~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s--~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~ 230 (253)
++|=.|++.|. ++..|+++|...|+.+..+ .+.++.....++..+ .++.+++.|+.+... .++
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 80 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP 80 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence 56667766543 3445555567689999998 666666666666556 589999999877521 257
Q ss_pred ccEEEEcccc
Q 025428 231 FQLVMDKGTL 240 (253)
Q Consensus 231 fD~Vi~~~~l 240 (253)
+|+++.+..+
T Consensus 81 ld~li~~ag~ 90 (167)
T PF00106_consen 81 LDILINNAGI 90 (167)
T ss_dssp ESEEEEECSC
T ss_pred cccccccccc
Confidence 8888865433
No 326
>PRK05876 short chain dehydrogenase; Provisional
Probab=80.84 E-value=10 Score=33.06 Aligned_cols=75 Identities=15% Similarity=0.209 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.++++|-.|++.|. ++..|+++|+ +|+.++.++..++...+.+...+. ++.++..|+.+... -+
T Consensus 5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 82 (275)
T PRK05876 5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG 82 (275)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 45678877765443 2344555677 899999998877766655554443 57888899876431 13
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
..|+++.+.-+
T Consensus 83 ~id~li~nAg~ 93 (275)
T PRK05876 83 HVDVVFSNAGI 93 (275)
T ss_pred CCCEEEECCCc
Confidence 57888876543
No 327
>PRK06172 short chain dehydrogenase; Provisional
Probab=80.78 E-value=12 Score=31.84 Aligned_cols=73 Identities=14% Similarity=0.124 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|-.|++. .++. .|++.|. +|+.++.+++-++...+.++..+ .++.++.+|+.+..- -
T Consensus 6 ~~k~ilItGas~-~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 6 SGKVALVTGGAA-GIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 467888888644 4443 4445576 89999999887776666555444 268899999976420 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+++|+++.+..
T Consensus 83 g~id~li~~ag 93 (253)
T PRK06172 83 GRLDYAFNNAG 93 (253)
T ss_pred CCCCEEEECCC
Confidence 35788887653
No 328
>PRK09291 short chain dehydrogenase; Provisional
Probab=80.57 E-value=14 Score=31.24 Aligned_cols=71 Identities=15% Similarity=0.254 Sum_probs=46.1
Q ss_pred CEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CCCCccEEEE
Q 025428 166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMD 236 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~~~fD~Vi~ 236 (253)
++||-.|++ |.++..+ +.+|+ +|++++.++..++..++.....+. ++.++.+|+.+.. .....|+|+.
T Consensus 3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~ 79 (257)
T PRK09291 3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN 79 (257)
T ss_pred CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence 467777764 4444444 44566 899999988766665555444443 5888999987753 1246888887
Q ss_pred ccc
Q 025428 237 KGT 239 (253)
Q Consensus 237 ~~~ 239 (253)
+..
T Consensus 80 ~ag 82 (257)
T PRK09291 80 NAG 82 (257)
T ss_pred CCC
Confidence 543
No 329
>PRK07677 short chain dehydrogenase; Provisional
Probab=80.22 E-value=11 Score=31.94 Aligned_cols=71 Identities=10% Similarity=0.143 Sum_probs=46.9
Q ss_pred CEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (253)
Q Consensus 166 ~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f 231 (253)
+++|-.|++.|. ++..++++|. +|++++.++..++...+.+...+ .++.++.+|+.+... -+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 467877775542 3444555677 89999999887776666554433 368889999876420 1457
Q ss_pred cEEEEcc
Q 025428 232 QLVMDKG 238 (253)
Q Consensus 232 D~Vi~~~ 238 (253)
|+++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 8888654
No 330
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=80.16 E-value=5 Score=31.42 Aligned_cols=72 Identities=19% Similarity=0.190 Sum_probs=44.2
Q ss_pred CCCCEEEEEcCC-Cc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-CCCCccEEEEccc
Q 025428 163 LSSWSVLDIGTG-NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~~~~fD~Vi~~~~ 239 (253)
.++.++|=+|+| .| .....|+..|+++++.+..+.+-.+...+.+ +-.++.+... .++. ....+|+|+..-.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~--~~~~~~~~~~DivI~aT~ 84 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPL--EDLEEALQEADIVINATP 84 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEG--GGHCHHHHTESEEEE-SS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeH--HHHHHHHhhCCeEEEecC
Confidence 477899999997 22 2345555668888999999986555444443 2124444433 3332 1257898887543
No 331
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=79.99 E-value=2 Score=41.60 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=52.8
Q ss_pred CCEEEEEcCCCcHHHHHHHhc---CCC--cEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEE
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ---GFS--DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMD 236 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~---g~~--~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~ 236 (253)
...|+=+|+|-|-+.....+. -.. ++++++.+|+++-..+.+ +....+ +++++..|++.+..+ .+.|++++
T Consensus 368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VS 445 (649)
T KOG0822|consen 368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNRVTIISSDMRKWNAPREQADIIVS 445 (649)
T ss_pred eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCeeEEEeccccccCCchhhccchHH
Confidence 447889999999886555443 111 899999999998777663 222333 599999999999876 78898875
No 332
>PRK07454 short chain dehydrogenase; Provisional
Probab=79.92 E-value=13 Score=31.23 Aligned_cols=73 Identities=18% Similarity=0.145 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------ 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------ 228 (253)
..+++|-.|+ +|.++..+ +++|. +|++++.++.-++...+..+..+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGW-DLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNPEAIAPGIAELLEQF 81 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3457888884 55554444 44576 89999999877666555544333 268889999977531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
++.|+++.+..
T Consensus 82 ~~id~lv~~ag 92 (241)
T PRK07454 82 GCPDVLINNAG 92 (241)
T ss_pred CCCCEEEECCC
Confidence 35788886554
No 333
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.88 E-value=13 Score=31.60 Aligned_cols=74 Identities=12% Similarity=0.151 Sum_probs=49.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|=.|++.|. +...|+++|. +|+.++.++..++...+.+...+. ++.++..|+.+..- -+
T Consensus 7 ~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 84 (252)
T PRK07035 7 TGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEMEQIDALFAHIRERHG 84 (252)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45678888877554 3444555677 899999998877766666554442 57778888866521 13
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
+.|+++.+..
T Consensus 85 ~id~li~~ag 94 (252)
T PRK07035 85 RLDILVNNAA 94 (252)
T ss_pred CCCEEEECCC
Confidence 5788886554
No 334
>PRK07063 short chain dehydrogenase; Provisional
Probab=79.83 E-value=12 Score=31.88 Aligned_cols=75 Identities=15% Similarity=0.210 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|++.|. ++..|+++|+ +|+.++.+++.++...+.+...+. .++.++.+|+.+... -
T Consensus 6 ~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 6 AGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888875443 3444555677 899999999888777666654211 258889999876521 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+.-
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46788876543
No 335
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=79.83 E-value=7.5 Score=31.94 Aligned_cols=71 Identities=17% Similarity=0.176 Sum_probs=42.5
Q ss_pred EEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH------------------HHHHHHHHHHHhcCC-CceEEEEeccCCC
Q 025428 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE------------------DAINLAQSLANRDGF-SCIKFLVDDVLDT 225 (253)
Q Consensus 167 ~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~------------------~~l~~ar~~~~~~g~-~~i~~~~~D~~~~ 225 (253)
+|+=+||| .|. ++..|++.|..+++-+|.+. .-.+.+++++++.+. .+++.+...+...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 47888998 355 56677777988899999865 223444445544332 1455554444332
Q ss_pred c---CCCCccEEEEc
Q 025428 226 K---LERQFQLVMDK 237 (253)
Q Consensus 226 ~---~~~~fD~Vi~~ 237 (253)
. +-+.+|+|+..
T Consensus 81 ~~~~~l~~~DlVi~~ 95 (174)
T cd01487 81 NLEGLFGDCDIVVEA 95 (174)
T ss_pred hHHHHhcCCCEEEEC
Confidence 1 11578999863
No 336
>PRK06949 short chain dehydrogenase; Provisional
Probab=79.54 E-value=13 Score=31.45 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.+++||-.| |+|.++..++ ++|+ +|++++.+++.++.....+...+. ++.++.+|+.+... .
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGA-KVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAHAETEA 84 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 567888888 5555554444 4466 899999999887766665544332 57888889876420 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (258)
T PRK06949 85 GTIDILVNNSG 95 (258)
T ss_pred CCCCEEEECCC
Confidence 35788887654
No 337
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=79.26 E-value=2.4 Score=38.24 Aligned_cols=74 Identities=23% Similarity=0.390 Sum_probs=59.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cCCC--ceEEEEeccCCCc--C-CCCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGFS--CIKFLVDDVLDTK--L-ERQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g~~--~i~~~~~D~~~~~--~-~~~fD~V 234 (253)
...++||-||.|-|.+....+++ -..++.-+|+++..++..++-... .|++ ++.+..||-..+- . .++||+|
T Consensus 120 ~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVi 199 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVI 199 (337)
T ss_pred CCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEE
Confidence 45679999999999999999888 345899999999999999887654 2443 5889999876653 2 4889999
Q ss_pred EE
Q 025428 235 MD 236 (253)
Q Consensus 235 i~ 236 (253)
+.
T Consensus 200 i~ 201 (337)
T KOG1562|consen 200 IT 201 (337)
T ss_pred EE
Confidence 86
No 338
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=79.20 E-value=13 Score=31.14 Aligned_cols=72 Identities=17% Similarity=0.172 Sum_probs=46.9
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.+++||-.|+ +|.++.. |+++|+ +|++++.++..+....+.+...+ .++.++.+|+.+... .
T Consensus 5 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (251)
T PRK12826 5 EGRVALVTGA-ARGIGRAIAVRLAADGA-EVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAGVEDF 81 (251)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 4567887775 4555444 455576 89999999776665555544433 358889999877421 0
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+.+|+|+.+.
T Consensus 82 ~~~d~vi~~a 91 (251)
T PRK12826 82 GRLDILVANA 91 (251)
T ss_pred CCCCEEEECC
Confidence 3678887655
No 339
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=78.50 E-value=5.1 Score=36.79 Aligned_cols=45 Identities=24% Similarity=0.366 Sum_probs=37.1
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
+..++.+|+=+|+| .|.++..+++. |+ +|+++|+|++-++.|++.
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~ga-~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAMGA-EVIAITRSEEKLELAKKL 209 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHcCC-eEEEEeCChHHHHHHHHh
Confidence 34678888888887 56678888884 74 999999999999999986
No 340
>PRK06194 hypothetical protein; Provisional
Probab=78.38 E-value=13 Score=32.28 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|+ +|.++.. |+++|+ +|+.+|.+.+.++...+.+...+. ++.++.+|+.+... .
T Consensus 5 ~~k~vlVtGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~~~~~ 81 (287)
T PRK06194 5 AGKVAVITGA-ASGFGLAFARIGAALGM-KLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAALERF 81 (287)
T ss_pred CCCEEEEeCC-ccHHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567886664 4544444 445576 899999998777666555544343 67889999876421 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+|+.+..+
T Consensus 82 g~id~vi~~Ag~ 93 (287)
T PRK06194 82 GAVHLLFNNAGV 93 (287)
T ss_pred CCCCEEEECCCC
Confidence 357888876644
No 341
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=78.12 E-value=1.2 Score=42.38 Aligned_cols=82 Identities=13% Similarity=0.058 Sum_probs=51.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc--C-CCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEeccCCC--cCC--CCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ--G-FSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDT--KLE--RQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~--g-~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~--~~~--~~fD~V 234 (253)
.....++|+|.|.|.-.-.+... + ...++.||.|..|+.....+... ..+..+.+...-+.+. |.+ +.||+|
T Consensus 199 f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlv 278 (491)
T KOG2539|consen 199 FRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLV 278 (491)
T ss_pred cChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeE
Confidence 34567888888876654444333 2 34789999999999999887754 1111111111122222 222 569999
Q ss_pred EEccccceec
Q 025428 235 MDKGTLDAIG 244 (253)
Q Consensus 235 i~~~~l~~i~ 244 (253)
++...+|+++
T Consensus 279 i~ah~l~~~~ 288 (491)
T KOG2539|consen 279 ICAHKLHELG 288 (491)
T ss_pred EeeeeeeccC
Confidence 9999999863
No 342
>PRK07814 short chain dehydrogenase; Provisional
Probab=78.09 E-value=14 Score=31.74 Aligned_cols=72 Identities=11% Similarity=0.130 Sum_probs=48.2
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|=.|+ +|.++.. |+++|+ +|++++.+++.++...+.+...+ .++.++..|+.+... -
T Consensus 9 ~~~~vlItGa-sggIG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 9 DDQVAVVTGA-GRGLGAAIALAFAEAGA-DVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 5678888885 5555544 445577 99999999887766655554433 257888899877531 0
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+.+|+|+.+.
T Consensus 86 ~~id~vi~~A 95 (263)
T PRK07814 86 GRLDIVVNNV 95 (263)
T ss_pred CCCCEEEECC
Confidence 3678887654
No 343
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=78.04 E-value=15 Score=31.59 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=51.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.++++|-.|++.|. ++..|+.+|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+... -+
T Consensus 9 ~~k~~lItGa~~~iG~~ia~~l~~~G~-~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 86 (265)
T PRK07097 9 KGKIALITGASYGIGFAIAKAYAKAGA-TIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQIEKEVG 86 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHhCC
Confidence 56788888876544 3455666677 799999998888777666655442 68889999876421 14
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
+.|+++.+...
T Consensus 87 ~id~li~~ag~ 97 (265)
T PRK07097 87 VIDILVNNAGI 97 (265)
T ss_pred CCCEEEECCCC
Confidence 57888876543
No 344
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=78.00 E-value=7.3 Score=30.59 Aligned_cols=52 Identities=12% Similarity=0.055 Sum_probs=30.7
Q ss_pred EEcCCCc--HHHHHHH--hcC-CCcEEEEeCCHHHHHHHHHH--HHhcCCC-ceEEEEec
Q 025428 170 DIGTGNG--LLLQELS--KQG-FSDLTGVDYSEDAINLAQSL--ANRDGFS-CIKFLVDD 221 (253)
Q Consensus 170 DiGcGtG--~~~~~la--~~g-~~~v~gvD~s~~~l~~ar~~--~~~~g~~-~i~~~~~D 221 (253)
|||++.| .....+. ..+ ..+|+++|.++..++..+++ +..+... .+++....
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 5555543 232 34899999999999999988 5544322 25555443
No 345
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=77.55 E-value=3 Score=38.59 Aligned_cols=81 Identities=21% Similarity=0.249 Sum_probs=45.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT 239 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~ 239 (253)
....+|||+|.|.|.-+..+-.. .-..++-++.|+..-++.......-......+...|+..-..+ ..-|.+.+..+
T Consensus 112 fapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl~i~ 191 (484)
T COG5459 112 FAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTLAIV 191 (484)
T ss_pred cCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeehhhh
Confidence 35568999999999888777655 2237888899996666555544332222233333333222111 23344444445
Q ss_pred ccee
Q 025428 240 LDAI 243 (253)
Q Consensus 240 l~~i 243 (253)
+|-+
T Consensus 192 ~~eL 195 (484)
T COG5459 192 LDEL 195 (484)
T ss_pred hhhh
Confidence 6655
No 346
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.46 E-value=17 Score=30.52 Aligned_cols=73 Identities=14% Similarity=0.152 Sum_probs=47.9
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
++.++|-.|+ +|.++..+ +++|. +|+.++.++..++.+.+.+...+ .++.+++.|+.+... .
T Consensus 4 ~~~~~lItG~-~g~iG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 4 KDKVIVITGG-AQGLGRAMAEYLAQKGA-KLALIDLNQEKLEEAVAECGALG-TEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 4678888886 34444433 44566 89999999877776666555444 267888899876421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+.+|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 45788887543
No 347
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=77.09 E-value=7.4 Score=34.37 Aligned_cols=64 Identities=19% Similarity=0.168 Sum_probs=41.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcC------CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcC
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL 227 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g------~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~ 227 (253)
.+...++|+|||.|.++..++..- ...++.||....-. .+-.++..... ..++=+..|+.++.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~dl~l 87 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIKDLDL 87 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEeeccch
Confidence 456799999999999999998762 23889999865333 22222222221 145566677777653
No 348
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=77.09 E-value=7.3 Score=35.25 Aligned_cols=46 Identities=22% Similarity=0.220 Sum_probs=38.9
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~ 209 (253)
..+.+|+-||+|--.++.++++.+. +|.+||+++.-|...+-++..
T Consensus 62 g~ghrivtigSGGcn~L~ylsr~Pa-~id~VDlN~ahiAln~lklaA 107 (414)
T COG5379 62 GIGHRIVTIGSGGCNMLAYLSRAPA-RIDVVDLNPAHIALNRLKLAA 107 (414)
T ss_pred CCCcEEEEecCCcchHHHHhhcCCc-eeEEEeCCHHHHHHHHHHHHH
Confidence 4678999999998889999988855 999999999988887766543
No 349
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=76.73 E-value=8.3 Score=35.31 Aligned_cols=73 Identities=25% Similarity=0.244 Sum_probs=45.9
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH---------------------HHHHHHHHHHHhcCCC-ceEEEE
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE---------------------DAINLAQSLANRDGFS-CIKFLV 219 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~---------------------~~l~~ar~~~~~~g~~-~i~~~~ 219 (253)
...+||=+||| .|. ++..|+..|..+++.+|.+. .-.+.++++++..+.. +++.+.
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~ 102 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVV 102 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEe
Confidence 56799999998 333 56667777888999999864 1234445555444321 466666
Q ss_pred eccCCCcC---CCCccEEEE
Q 025428 220 DDVLDTKL---ERQFQLVMD 236 (253)
Q Consensus 220 ~D~~~~~~---~~~fD~Vi~ 236 (253)
.++..... -..+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid 122 (338)
T PRK12475 103 TDVTVEELEELVKEVDLIID 122 (338)
T ss_pred ccCCHHHHHHHhcCCCEEEE
Confidence 66542211 256899886
No 350
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=76.35 E-value=6.4 Score=38.92 Aligned_cols=61 Identities=18% Similarity=0.220 Sum_probs=41.7
Q ss_pred CEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428 166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD 236 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~ 236 (253)
.+|+=+|+| +++..+++ +|. +++.+|.+++.++.+++. ...++.||..+... . +..|+++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-------GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-------CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 456665554 45444443 455 899999999999988752 45789999988642 2 56777765
No 351
>PRK07478 short chain dehydrogenase; Provisional
Probab=76.24 E-value=19 Score=30.60 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=49.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~------~~ 229 (253)
+++++|=.|++.|. +...|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+.. + -+
T Consensus 5 ~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 82 (254)
T PRK07478 5 NGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALAVERFG 82 (254)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHhcC
Confidence 45678877765442 2344555677 899999998887777666655442 6788889987653 1 14
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
..|+++.+...
T Consensus 83 ~id~li~~ag~ 93 (254)
T PRK07478 83 GLDIAFNNAGT 93 (254)
T ss_pred CCCEEEECCCC
Confidence 67888876543
No 352
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=76.18 E-value=21 Score=27.94 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=28.6
Q ss_pred CCCCEEEEEcCCC--cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcGt--G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+|+-+|||. ..++..++..|...++.+|.+++..+...+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~ 62 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAER 62 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHH
Confidence 3567899999863 2233444444545899999998766554443
No 353
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.14 E-value=17 Score=32.04 Aligned_cols=72 Identities=14% Similarity=0.176 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|++. .++.. |+++|. +|+.++.+++.++...+.+...+. ++.++.+|+.+... -
T Consensus 39 ~~k~vlItGasg-gIG~~la~~La~~G~-~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~ 115 (293)
T PRK05866 39 TGKRILLTGASS-GIGEAAAEQFARRGA-TVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDLDAVDALVADVEKRI 115 (293)
T ss_pred CCCEEEEeCCCc-HHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456888888644 44444 445566 899999998887766665544332 57788999877431 1
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+++.+.
T Consensus 116 g~id~li~~A 125 (293)
T PRK05866 116 GGVDILINNA 125 (293)
T ss_pred CCCCEEEECC
Confidence 3678888654
No 354
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.12 E-value=19 Score=30.09 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=39.3
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
++++||-.|++ |.++..+ ++.|+ +|++++.+++.+....+..... .++.++.+|+.+.
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~ 65 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKY--GNIHYVVGDVSST 65 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhc--CCeEEEECCCCCH
Confidence 45788888875 4444333 34577 8999999988776654444332 2678889998864
No 355
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=76.11 E-value=13 Score=32.89 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcC-C---CCccEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-E---RQFQLV 234 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~-~---~~fD~V 234 (253)
.+++||-.| |+|.++..+++ .|+ +|+++..++.............+. .+++++.+|+.+... . ...|+|
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v 81 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGY-TINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETV 81 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCC-EEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEE
Confidence 356788777 66776666655 466 788877766544333222222222 368899999987641 1 357887
Q ss_pred EEcccc
Q 025428 235 MDKGTL 240 (253)
Q Consensus 235 i~~~~l 240 (253)
+.....
T Consensus 82 ih~A~~ 87 (325)
T PLN02989 82 FHTASP 87 (325)
T ss_pred EEeCCC
Confidence 765543
No 356
>PRK07109 short chain dehydrogenase; Provisional
Probab=76.06 E-value=17 Score=32.82 Aligned_cols=74 Identities=14% Similarity=0.147 Sum_probs=50.1
Q ss_pred CCCEEEEEcCCCcHH---HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGLL---LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~---~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.+++||=.|++.|.- +..|+++|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+... -+
T Consensus 7 ~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 7 GRQVVVITGASAGVGRATARAFARRGA-KVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 456788888644332 244455677 899999999888777666655553 68888999877531 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+.-
T Consensus 85 ~iD~lInnAg 94 (334)
T PRK07109 85 PIDTWVNNAM 94 (334)
T ss_pred CCCEEEECCC
Confidence 6888887653
No 357
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=76.05 E-value=7 Score=35.98 Aligned_cols=46 Identities=26% Similarity=0.328 Sum_probs=37.2
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
+..++.+|.=+||| .|...+.-++. |+.+++++|++++-++.|++.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~f 229 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKF 229 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhc
Confidence 33678899999997 56666666655 788999999999999999975
No 358
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=75.67 E-value=6.7 Score=38.23 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=41.7
Q ss_pred CEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CC-CCccEEEE
Q 025428 166 WSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LE-RQFQLVMD 236 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~-~~fD~Vi~ 236 (253)
.+++=+||| .++..+++ +|. +++.+|.+++.++.+++. +...+.+|..+.. .. +..|.++.
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~-~vvvId~d~~~~~~~~~~-------g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGI-PLVVIETSRTRVDELRER-------GIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHC-------CCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666665 44444443 355 899999999998888752 5689999998853 12 57786653
No 359
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=75.61 E-value=12 Score=33.53 Aligned_cols=70 Identities=24% Similarity=0.384 Sum_probs=43.2
Q ss_pred EEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCCC-ceEEEEeccCC
Q 025428 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGFS-CIKFLVDDVLD 224 (253)
Q Consensus 167 ~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~~-~i~~~~~D~~~ 224 (253)
+||=+||| .|. ++..|+..|..+++.+|.+. .-.+.|.+++++.+.. +++....++.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 47888887 444 45556666888999988421 1234445555443322 56677777765
Q ss_pred CcC--CCCccEEEE
Q 025428 225 TKL--ERQFQLVMD 236 (253)
Q Consensus 225 ~~~--~~~fD~Vi~ 236 (253)
... -..||+|++
T Consensus 81 ~~~~f~~~fdvVi~ 94 (291)
T cd01488 81 KDEEFYRQFNIIIC 94 (291)
T ss_pred hhHHHhcCCCEEEE
Confidence 432 268999997
No 360
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.57 E-value=18 Score=30.30 Aligned_cols=73 Identities=14% Similarity=0.196 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------ 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------ 228 (253)
.++++|-.|+ +|.++..++ .+|+ +|+.++.++..++.....+...+ .++.++..|+.+... .
T Consensus 6 ~~~~vlVtG~-sg~iG~~l~~~L~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (239)
T PRK07666 6 QGKNALITGA-GRGIGRAVAIALAKEGV-NVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQLKNEL 82 (239)
T ss_pred CCCEEEEEcC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3567888884 666665544 4577 89999999876665544444333 268888999876431 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+|+.+..
T Consensus 83 ~~id~vi~~ag 93 (239)
T PRK07666 83 GSIDILINNAG 93 (239)
T ss_pred CCccEEEEcCc
Confidence 35788886543
No 361
>PRK07062 short chain dehydrogenase; Provisional
Probab=75.45 E-value=19 Score=30.73 Aligned_cols=75 Identities=13% Similarity=0.106 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|++.|. ++..|+++|+ +|+.++.+++.++.+.+.+..... .++.++..|+.+... -
T Consensus 7 ~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 7 EGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 56788888876553 3444555677 899999999887776665544321 257788889877531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+.-
T Consensus 86 g~id~li~~Ag 96 (265)
T PRK07062 86 GGVDMLVNNAG 96 (265)
T ss_pred CCCCEEEECCC
Confidence 45788877654
No 362
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=75.37 E-value=9.2 Score=35.80 Aligned_cols=69 Identities=25% Similarity=0.375 Sum_probs=47.6
Q ss_pred CEEEEEcCC-CcHHH-HHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEEcc
Q 025428 166 WSVLDIGTG-NGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG 238 (253)
Q Consensus 166 ~~VLDiGcG-tG~~~-~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~~~ 238 (253)
.+||=|||| .|... ..++.++..+|+..|.|.+.++.+..... .+++.++.|+.+.+- -+.+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~----~~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG----GKVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc----ccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 478999995 23332 23344464599999999988887776532 278999999988741 15669988744
No 363
>PRK07024 short chain dehydrogenase; Provisional
Probab=74.57 E-value=14 Score=31.47 Aligned_cols=70 Identities=19% Similarity=0.175 Sum_probs=45.4
Q ss_pred CEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428 166 WSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~ 230 (253)
.+||=.|+ +|.++.. |+++|+ +|+.++.+++.++...+.+...+ ++.++.+|+.+... .+.
T Consensus 3 ~~vlItGa-s~gIG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~i~~~~~~~~~~~g~ 78 (257)
T PRK07024 3 LKVFITGA-SSGIGQALAREYARQGA-TLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDADALAAAAADFIAAHGL 78 (257)
T ss_pred CEEEEEcC-CcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 46776775 4444444 445576 89999999887766555443222 68889999977421 135
Q ss_pred ccEEEEccc
Q 025428 231 FQLVMDKGT 239 (253)
Q Consensus 231 fD~Vi~~~~ 239 (253)
.|+++.+..
T Consensus 79 id~lv~~ag 87 (257)
T PRK07024 79 PDVVIANAG 87 (257)
T ss_pred CCEEEECCC
Confidence 788887654
No 364
>PRK08643 acetoin reductase; Validated
Probab=74.39 E-value=21 Score=30.31 Aligned_cols=70 Identities=24% Similarity=0.312 Sum_probs=46.0
Q ss_pred CEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428 166 WSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~ 230 (253)
+++|=.|+. |.++. .|+++|+ +|+.++.++..++.....+...+ .++.++.+|+.+... .+.
T Consensus 3 k~~lItGas-~giG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 79 (256)
T PRK08643 3 KVALVTGAG-QGIGFAIAKRLVEDGF-KVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVDTFGD 79 (256)
T ss_pred CEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 466766644 44444 4445576 89999999887776666555443 267888999987531 145
Q ss_pred ccEEEEcc
Q 025428 231 FQLVMDKG 238 (253)
Q Consensus 231 fD~Vi~~~ 238 (253)
.|+++.+.
T Consensus 80 id~vi~~a 87 (256)
T PRK08643 80 LNVVVNNA 87 (256)
T ss_pred CCEEEECC
Confidence 78887654
No 365
>PRK06139 short chain dehydrogenase; Provisional
Probab=74.34 E-value=19 Score=32.53 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=50.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----------CCC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----------~~~ 229 (253)
.+++||=.|++.|. ++..|+++|+ +|+.++.+++.++...+.++..+. ++.++..|+.+.. ..+
T Consensus 6 ~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g 83 (330)
T PRK06139 6 HGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQAASFGG 83 (330)
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45688877774433 2344555677 899999999988877776665553 6778888887642 015
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
.+|+++.+.-
T Consensus 84 ~iD~lVnnAG 93 (330)
T PRK06139 84 RIDVWVNNVG 93 (330)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 366
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=74.08 E-value=16 Score=31.36 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=43.2
Q ss_pred EEEEEcCCC--cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428 167 SVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD 236 (253)
Q Consensus 167 ~VLDiGcGt--G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~ 236 (253)
+++=+|||. +.++..|.+.|. .|+.+|.+++.++..... . -.+..+++|..+... . ..+|+++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~----~-~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLAD----E-LDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhh----h-cceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 466677772 334555555666 999999999988774431 0 157888999887642 2 57888775
No 367
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=74.04 E-value=18 Score=30.61 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=48.0
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|=.|+ +|.++.. |+++|. +|++++.++...+...+.+...+. ++.++.+|+.+... .
T Consensus 6 ~~~~vlItGa-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (262)
T PRK13394 6 NGKTAVVTGA-ASGIGKEIALELARAGA-AVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKVAERF 82 (262)
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4567776555 4454444 445577 899999999877777666654442 57888999877531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
++.|+|+.+..
T Consensus 83 ~~~d~vi~~ag 93 (262)
T PRK13394 83 GSVDILVSNAG 93 (262)
T ss_pred CCCCEEEECCc
Confidence 35788776553
No 368
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=73.95 E-value=6.8 Score=38.03 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=36.1
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+|+=+||| .|..+...++. |+ .|+++|.+++.++++++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESM 207 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc
Confidence 367899999999 57777777776 77 899999999999988873
No 369
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=73.82 E-value=24 Score=33.03 Aligned_cols=65 Identities=14% Similarity=0.124 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CC-CCccEE
Q 025428 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LE-RQFQLV 234 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~-~~fD~V 234 (253)
...+++=+|+ |.++..+++ .|. .++.+|.+++.++..++.. .++.++.+|..+.. .. ..+|+|
T Consensus 230 ~~~~iiIiG~--G~~g~~l~~~L~~~~~-~v~vid~~~~~~~~~~~~~-----~~~~~i~gd~~~~~~L~~~~~~~a~~v 301 (453)
T PRK09496 230 PVKRVMIVGG--GNIGYYLAKLLEKEGY-SVKLIERDPERAEELAEEL-----PNTLVLHGDGTDQELLEEEGIDEADAF 301 (453)
T ss_pred CCCEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHC-----CCCeEEECCCCCHHHHHhcCCccCCEE
Confidence 3567888887 555555444 355 8999999999888776642 25678999987653 12 567777
Q ss_pred EE
Q 025428 235 MD 236 (253)
Q Consensus 235 i~ 236 (253)
++
T Consensus 302 i~ 303 (453)
T PRK09496 302 IA 303 (453)
T ss_pred EE
Confidence 75
No 370
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=73.81 E-value=22 Score=30.16 Aligned_cols=74 Identities=14% Similarity=0.135 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.+++||-.|++.|. +...|+++|. +++.++.+...++.....++..+. ++.++..|+.+... -+
T Consensus 10 ~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~~~~~~ 87 (255)
T PRK06113 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFALSKLG 87 (255)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56789999965543 2334555576 899999988887766655544432 57788889876531 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
.+|+++.+..
T Consensus 88 ~~d~li~~ag 97 (255)
T PRK06113 88 KVDILVNNAG 97 (255)
T ss_pred CCCEEEECCC
Confidence 6788887654
No 371
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=73.70 E-value=10 Score=35.16 Aligned_cols=81 Identities=15% Similarity=-0.003 Sum_probs=57.8
Q ss_pred HHhccCCCCCEEEEEcCCCcHHHHHHHhcCC---C--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----
Q 025428 157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGF---S--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---- 227 (253)
Q Consensus 157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~---~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---- 227 (253)
-++....++.+|||+++-.|.-+..+....+ . .|++-|.+..-+...+..+.+....++.+...|+...+-
T Consensus 148 vL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~ 227 (375)
T KOG2198|consen 148 VLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK 227 (375)
T ss_pred hhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc
Confidence 3445667899999999999998877776522 2 799999999999888888765544455566655544431
Q ss_pred -----C-CCccEEEEc
Q 025428 228 -----E-RQFQLVMDK 237 (253)
Q Consensus 228 -----~-~~fD~Vi~~ 237 (253)
. ..||-|++.
T Consensus 228 ~~~~~~~~~fDrVLvD 243 (375)
T KOG2198|consen 228 DGNDKEQLKFDRVLVD 243 (375)
T ss_pred cCchhhhhhcceeEEe
Confidence 1 368888764
No 372
>PRK07576 short chain dehydrogenase; Provisional
Probab=73.53 E-value=22 Score=30.58 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~------~ 228 (253)
+++++|-.|. +|.++.. |+..|+ +|++++.+++-++...+.+...+ .++.++..|+.+.. + .
T Consensus 8 ~~k~ilItGa-sggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 8 AGKNVVVVGG-TSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAG-PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5678888875 4444444 445566 89999999887765555444333 25678888987642 1 1
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+++.+.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3578888654
No 373
>PRK09242 tropinone reductase; Provisional
Probab=73.42 E-value=22 Score=30.21 Aligned_cols=75 Identities=19% Similarity=0.194 Sum_probs=49.1
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|++.|. ++..++++|+ +|+.++.+++.++...+.+.... -.++.++.+|+.+... -
T Consensus 8 ~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 86 (257)
T PRK09242 8 DGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW 86 (257)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 56788888875443 3344455577 89999999888776666554431 1257888999876420 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
++.|+++.+..
T Consensus 87 g~id~li~~ag 97 (257)
T PRK09242 87 DGLHILVNNAG 97 (257)
T ss_pred CCCCEEEECCC
Confidence 46788876553
No 374
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=73.39 E-value=25 Score=29.52 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|-.|+ +|.++..++ +.|. +|++++.++.......+.+...+ .++.++.+|+.+... .
T Consensus 2 ~~~~ilItGa-s~~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~ 78 (250)
T TIGR03206 2 KDKTAIVTGG-GGGIGGATCRRFAEEGA-KVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTAVAAAEQAL 78 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 3567787775 455554444 4466 89999999887766665554433 268889999876421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 79 ~~~d~vi~~ag 89 (250)
T TIGR03206 79 GPVDVLVNNAG 89 (250)
T ss_pred CCCCEEEECCC
Confidence 35787776553
No 375
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=73.36 E-value=11 Score=34.68 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCC-cH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCCC-ceEEEEec
Q 025428 164 SSWSVLDIGTGN-GL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGFS-CIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcGt-G~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~~-~i~~~~~D 221 (253)
...+||=+|||. |. .+..|+..|..+++.+|.+. .-.+.+.+++...+.. +++.+...
T Consensus 27 ~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~ 106 (355)
T PRK05597 27 FDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRR 106 (355)
T ss_pred hCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEee
Confidence 567999999983 43 56777777998999999653 2345566666554421 35555444
Q ss_pred cCCCc---CCCCccEEEEc
Q 025428 222 VLDTK---LERQFQLVMDK 237 (253)
Q Consensus 222 ~~~~~---~~~~fD~Vi~~ 237 (253)
+.... +-..||+|+..
T Consensus 107 i~~~~~~~~~~~~DvVvd~ 125 (355)
T PRK05597 107 LTWSNALDELRDADVILDG 125 (355)
T ss_pred cCHHHHHHHHhCCCEEEEC
Confidence 43211 12579999873
No 376
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=73.32 E-value=19 Score=30.25 Aligned_cols=70 Identities=17% Similarity=0.253 Sum_probs=46.0
Q ss_pred EEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C---CCCc
Q 025428 167 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L---ERQF 231 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~---~~~f 231 (253)
++|=.| |+|.++..+++ +|. +|++++.++...+.........+ .++.++.+|+.+.. . -+..
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~ 79 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGA-NVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAAEFGGL 79 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHhcCCC
Confidence 566666 55666555554 476 89999999877766665554433 26888999998753 0 1457
Q ss_pred cEEEEccc
Q 025428 232 QLVMDKGT 239 (253)
Q Consensus 232 D~Vi~~~~ 239 (253)
|+|+.+..
T Consensus 80 d~vi~~a~ 87 (255)
T TIGR01963 80 DILVNNAG 87 (255)
T ss_pred CEEEECCC
Confidence 88876553
No 377
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=73.29 E-value=21 Score=30.13 Aligned_cols=72 Identities=15% Similarity=0.131 Sum_probs=48.1
Q ss_pred CCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++||=.| |+|.++..++++ |. +|++++.++...+.....+...+ .++.++.+|+.+... .+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGA-KVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 456666666554 66 89999999887776665554444 368889999876431 13
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+|+.+..
T Consensus 81 ~~d~vi~~a~ 90 (258)
T PRK12429 81 GVDILVNNAG 90 (258)
T ss_pred CCCEEEECCC
Confidence 5788886553
No 378
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=73.27 E-value=12 Score=34.33 Aligned_cols=73 Identities=25% Similarity=0.249 Sum_probs=45.6
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH---------------------HHHHHHHHHHHhcCCC-ceEEEE
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE---------------------DAINLAQSLANRDGFS-CIKFLV 219 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~---------------------~~l~~ar~~~~~~g~~-~i~~~~ 219 (253)
...+||=+||| .|. ++..|+..|..+++.+|.+. .-.+.++++++..+.. +++.+.
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~ 102 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIV 102 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence 56799999998 343 56677777888999999862 1223444555443321 456666
Q ss_pred eccCCCc---CCCCccEEEE
Q 025428 220 DDVLDTK---LERQFQLVMD 236 (253)
Q Consensus 220 ~D~~~~~---~~~~fD~Vi~ 236 (253)
.++.... +-..||+|+.
T Consensus 103 ~~~~~~~~~~~~~~~DlVid 122 (339)
T PRK07688 103 QDVTAEELEELVTGVDLIID 122 (339)
T ss_pred ccCCHHHHHHHHcCCCEEEE
Confidence 5554321 1256899886
No 379
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=73.16 E-value=4.6 Score=38.72 Aligned_cols=73 Identities=22% Similarity=0.353 Sum_probs=47.1
Q ss_pred CCCEEEEEcCC-CcHH-HHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCC-CceEEEEec
Q 025428 164 SSWSVLDIGTG-NGLL-LQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~~-~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
.+.+||=+||| -|.- +..|+..|+.+|.-||.+. .-...|.+..+.... -++...+++
T Consensus 11 ~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l~~yhan 90 (603)
T KOG2013|consen 11 KSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKLVPYHAN 90 (603)
T ss_pred ccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCceEecccc
Confidence 57899999997 5654 4445555899888888532 112334444433332 257889999
Q ss_pred cCCCcCC----CCccEEEE
Q 025428 222 VLDTKLE----RQFQLVMD 236 (253)
Q Consensus 222 ~~~~~~~----~~fD~Vi~ 236 (253)
+.+..++ ++||+|+.
T Consensus 91 I~e~~fnv~ff~qfdiV~N 109 (603)
T KOG2013|consen 91 IKEPKFNVEFFRQFDIVLN 109 (603)
T ss_pred ccCcchHHHHHHHHHHHHH
Confidence 9998654 67888764
No 380
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=73.14 E-value=24 Score=30.01 Aligned_cols=72 Identities=15% Similarity=0.261 Sum_probs=45.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.++++|=.|++.|. ++..|++.|+ +|+.++.+. ..+.+.+.....+ .++.++.+|+.+... -+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~g 90 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHGT-NWDETRRLIEKEG-RKVTFVQVDLTKPESAEKVVKEALEEFG 90 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCc-HHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 56788888876553 3444556677 888888873 3444444444333 368889999887431 13
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
..|+++.+.
T Consensus 91 ~id~li~~a 99 (258)
T PRK06935 91 KIDILVNNA 99 (258)
T ss_pred CCCEEEECC
Confidence 578888654
No 381
>PRK08589 short chain dehydrogenase; Validated
Probab=73.10 E-value=22 Score=30.69 Aligned_cols=73 Identities=15% Similarity=0.213 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|=.|++.|. ++..|+++|+ +|++++.+ +.++...+.+...+ .++.++..|+.+..- -+
T Consensus 5 ~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (272)
T PRK08589 5 ENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-EAVSETVDKIKSNG-GKAKAYHVDISDEQQVKDFASEIKEQFG 81 (272)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-HHHHHHHHHHHhcC-CeEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 45678877775543 3445556676 89999999 44544444444333 257888899876520 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+.-
T Consensus 82 ~id~li~~Ag 91 (272)
T PRK08589 82 RVDVLFNNAG 91 (272)
T ss_pred CcCEEEECCC
Confidence 5788887654
No 382
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=72.89 E-value=9.4 Score=34.50 Aligned_cols=42 Identities=21% Similarity=0.402 Sum_probs=30.9
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeC---CHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDY---SEDAINLAQS 205 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~---s~~~l~~ar~ 205 (253)
.++.+||-+|+| .|.++..+++. |. +|++++. ++.-++.+++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~ 217 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEE 217 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHH
Confidence 467899999886 46666777776 66 8999987 6777776654
No 383
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=72.70 E-value=7.4 Score=38.65 Aligned_cols=64 Identities=20% Similarity=0.291 Sum_probs=45.0
Q ss_pred CCEEEEEcCC-CcHHHH-HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428 165 SWSVLDIGTG-NGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD 236 (253)
Q Consensus 165 ~~~VLDiGcG-tG~~~~-~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~ 236 (253)
..+|+=+||| .|.... .|.++|. +++.+|.+++.++.+++. ...++.||..+... . +..|++++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-------g~~v~~GDat~~~~L~~agi~~A~~vvv 470 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPDHIETLRKF-------GMKVFYGDATRMDLLESAGAAKAEVLIN 470 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhc-------CCeEEEEeCCCHHHHHhcCCCcCCEEEE
Confidence 3578888877 344333 3344455 899999999999988752 45789999988642 2 56777775
No 384
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=72.60 E-value=20 Score=35.27 Aligned_cols=89 Identities=22% Similarity=0.308 Sum_probs=65.4
Q ss_pred cCCCCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCc-----CC-C
Q 025428 161 KYLSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTK-----LE-R 229 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~-----~~-~ 229 (253)
....+++||=-| |+|.++..+.++ +.++++-+|.++..+...+..+... +..++.++.+|+.+.. +. -
T Consensus 246 ~~~~gK~vLVTG-agGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~ 324 (588)
T COG1086 246 AMLTGKTVLVTG-GGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH 324 (588)
T ss_pred hHcCCCEEEEeC-CCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC
Confidence 334667777555 678877777665 6779999999999998888877653 3347899999999874 12 4
Q ss_pred CccEEEEccccceeccCCCCC
Q 025428 230 QFQLVMDKGTLDAIGLHPDGP 250 (253)
Q Consensus 230 ~fD~Vi~~~~l~~i~~~pd~~ 250 (253)
+.|+|+--..+-|+.+-..+|
T Consensus 325 kvd~VfHAAA~KHVPl~E~nP 345 (588)
T COG1086 325 KVDIVFHAAALKHVPLVEYNP 345 (588)
T ss_pred CCceEEEhhhhccCcchhcCH
Confidence 689999877887877654443
No 385
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=72.43 E-value=20 Score=33.31 Aligned_cols=92 Identities=21% Similarity=0.219 Sum_probs=56.8
Q ss_pred chHHHHhccCCCCCEEEEEcCCCcH----HHHHHHhc--CCC--cEEEEeC----CHHHHHHHHHHHHh----cCCCceE
Q 025428 153 SEPVEENDKYLSSWSVLDIGTGNGL----LLQELSKQ--GFS--DLTGVDY----SEDAINLAQSLANR----DGFSCIK 216 (253)
Q Consensus 153 ~~l~~~l~~~~~~~~VLDiGcGtG~----~~~~la~~--g~~--~v~gvD~----s~~~l~~ar~~~~~----~g~~~i~ 216 (253)
.+|++.+... +.-+|+|+|.|.|. +...|+.+ |.. ++|||+. +..-++.+.+++.. .|+ ..+
T Consensus 100 qaIleA~~g~-~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv-~fe 177 (374)
T PF03514_consen 100 QAILEAFEGE-RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGV-PFE 177 (374)
T ss_pred HHHHHHhccC-cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCc-cEE
Confidence 4555655553 56699999999997 45666665 212 8999999 88888888877643 355 344
Q ss_pred EEE---eccCCCc---C---CCCccEEEEccccceeccC
Q 025428 217 FLV---DDVLDTK---L---ERQFQLVMDKGTLDAIGLH 246 (253)
Q Consensus 217 ~~~---~D~~~~~---~---~~~fD~Vi~~~~l~~i~~~ 246 (253)
|.. .++.++. + ++..=+|-+...||++.-+
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~ 216 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDE 216 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccc
Confidence 433 2333332 1 1223344466677888643
No 386
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=72.31 E-value=19 Score=30.63 Aligned_cols=73 Identities=15% Similarity=0.172 Sum_probs=44.8
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH------------------HHHHHHHHHHHhcCC-CceEEEEecc
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE------------------DAINLAQSLANRDGF-SCIKFLVDDV 222 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~------------------~~l~~ar~~~~~~g~-~~i~~~~~D~ 222 (253)
+..+|+=+||| .|. ++..|+..|..+++.+|.+. .-.+.+.+++...+. .+++.+...+
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~i 106 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEKI 106 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeeec
Confidence 56789999998 344 56777777988999999871 223445555544332 1344444444
Q ss_pred CCCcC---CCCccEEEE
Q 025428 223 LDTKL---ERQFQLVMD 236 (253)
Q Consensus 223 ~~~~~---~~~fD~Vi~ 236 (253)
..... -..||+|+.
T Consensus 107 ~~~~~~~~~~~~DvVI~ 123 (212)
T PRK08644 107 DEDNIEELFKDCDIVVE 123 (212)
T ss_pred CHHHHHHHHcCCCEEEE
Confidence 33211 156899985
No 387
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=72.09 E-value=24 Score=30.36 Aligned_cols=74 Identities=16% Similarity=0.181 Sum_probs=48.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|-.|++.|. +...|+++|. +|+.++.+++.++...+.+...+. ++.++.+|+.+... -+
T Consensus 9 ~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (278)
T PRK08277 9 KGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQEKAEAVVAEIKAAGG-EALAVKADVLDKESLEQARQQILEDFG 86 (278)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45778877765443 2344555677 899999998777665555544332 57888999876531 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+..
T Consensus 87 ~id~li~~ag 96 (278)
T PRK08277 87 PCDILINGAG 96 (278)
T ss_pred CCCEEEECCC
Confidence 6788887654
No 388
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=72.05 E-value=10 Score=32.39 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=45.2
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeC-------------------CHHHHHHHHHHHHhcCCC-ceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDY-------------------SEDAINLAQSLANRDGFS-CIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~-------------------s~~~l~~ar~~~~~~g~~-~i~~~~~D 221 (253)
...+|+=+||| .|. ++..|+..|..+++.+|. -..-.+.+.+++++.+.. +++.+...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~ 99 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNER 99 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecce
Confidence 56799999998 344 566677779889988863 333345566666554431 45555554
Q ss_pred cCCCc---CCCCccEEEE
Q 025428 222 VLDTK---LERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~---~~~~fD~Vi~ 236 (253)
+.... +-..+|+|++
T Consensus 100 i~~~~~~~~~~~~DvVi~ 117 (228)
T cd00757 100 LDAENAEELIAGYDLVLD 117 (228)
T ss_pred eCHHHHHHHHhCCCEEEE
Confidence 42211 1156899986
No 389
>PRK09072 short chain dehydrogenase; Provisional
Probab=71.89 E-value=25 Score=29.99 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------CCC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQ 230 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~~~ 230 (253)
++.++|=.|++.|. ++..++++|+ +|++++.+++.++.....+ ..+ .++.++.+|+.+... .+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~-~~~-~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNAEKLEALAARL-PYP-GRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHH-hcC-CceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 45678888765433 3444556677 8999999988777665544 222 368889999877531 135
Q ss_pred ccEEEEccc
Q 025428 231 FQLVMDKGT 239 (253)
Q Consensus 231 fD~Vi~~~~ 239 (253)
.|.++.+..
T Consensus 81 id~lv~~ag 89 (263)
T PRK09072 81 INVLINNAG 89 (263)
T ss_pred CCEEEECCC
Confidence 688876543
No 390
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=71.78 E-value=20 Score=30.62 Aligned_cols=70 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred EEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C------CCCcc
Q 025428 167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L------ERQFQ 232 (253)
Q Consensus 167 ~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~------~~~fD 232 (253)
++|=.|++.|. ++..|+++|+ +|+.++.++..++.+.+.+...+ ++.++..|+.+.. + -+..|
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id 78 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWELLGGID 78 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHHhcCCCC
Confidence 46777765443 3444555677 89999999988877766654432 5778889987642 0 14688
Q ss_pred EEEEccc
Q 025428 233 LVMDKGT 239 (253)
Q Consensus 233 ~Vi~~~~ 239 (253)
+++.+.-
T Consensus 79 ~li~naG 85 (259)
T PRK08340 79 ALVWNAG 85 (259)
T ss_pred EEEECCC
Confidence 8887643
No 391
>PRK08223 hypothetical protein; Validated
Probab=71.60 E-value=17 Score=32.64 Aligned_cols=73 Identities=15% Similarity=0.152 Sum_probs=45.8
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCCC-ceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGFS-CIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~~-~i~~~~~D 221 (253)
+..+||=+||| .|. .+..|+..|..+++.+|.+. .-++.+++++...+.. +|+.+...
T Consensus 26 ~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~ 105 (287)
T PRK08223 26 RNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEG 105 (287)
T ss_pred hcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56799999998 344 57888888988999998531 1235556665544421 35555444
Q ss_pred cCCCcC---CCCccEEEE
Q 025428 222 VLDTKL---ERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~~---~~~fD~Vi~ 236 (253)
+..... -..+|+|+.
T Consensus 106 l~~~n~~~ll~~~DlVvD 123 (287)
T PRK08223 106 IGKENADAFLDGVDVYVD 123 (287)
T ss_pred cCccCHHHHHhCCCEEEE
Confidence 433221 157899985
No 392
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=71.21 E-value=17 Score=35.78 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhc-----CC---CceEEEEeccCCCcC----
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRD-----GF---SCIKFLVDDVLDTKL---- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~-----g~---~~i~~~~~D~~~~~~---- 227 (253)
.+++||-.|+ +|.++..++ +.|+ +|++++.+.+.+....+.+... |. .++.++.+|+.+...
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~-~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a 156 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGF-RVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA 156 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence 4556666664 566665554 4466 8999999987765544433221 11 258899999987531
Q ss_pred CCCccEEEEcc
Q 025428 228 ERQFQLVMDKG 238 (253)
Q Consensus 228 ~~~fD~Vi~~~ 238 (253)
-+..|+||++.
T Consensus 157 LggiDiVVn~A 167 (576)
T PLN03209 157 LGNASVVICCI 167 (576)
T ss_pred hcCCCEEEEcc
Confidence 15678888753
No 393
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.75 E-value=26 Score=29.33 Aligned_cols=72 Identities=11% Similarity=0.065 Sum_probs=47.7
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------ 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------ 228 (253)
+++++|=.|+ +|.++..++ ++|. ++++++.+++.+....+.++..+ .++.++.+|+.+... .
T Consensus 6 ~~~~vlItGa-~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGA-ARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 4577886664 555555554 4466 89999999887776655554433 368899999976431 0
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+|+.+.
T Consensus 83 ~~id~vi~~a 92 (250)
T PRK12939 83 GGLDGLVNNA 92 (250)
T ss_pred CCCCEEEECC
Confidence 4678877654
No 394
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=70.64 E-value=27 Score=28.98 Aligned_cols=59 Identities=20% Similarity=0.157 Sum_probs=40.2
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
.+.+||=.|+ +|.++..++ ++|. +|++++.++..++.....+...+. ++.++.+|+.+.
T Consensus 4 ~~~~ilItGa-sg~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 66 (246)
T PRK05653 4 QGKTALVTGA-SRGIGRAIALRLAADGA-KVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDE 66 (246)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence 3467887775 666655554 4577 699999998777665555443332 578888998764
No 395
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=70.58 E-value=18 Score=30.28 Aligned_cols=74 Identities=20% Similarity=0.187 Sum_probs=43.7
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCCC-ceEEEEec
Q 025428 164 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGFS-CIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcGt-G-~~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~~-~i~~~~~D 221 (253)
...+||=+|||. | -++..|+..|..+++.+|... .-.+.+.+++++.+.. +++.....
T Consensus 20 ~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~ 99 (197)
T cd01492 20 RSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD 99 (197)
T ss_pred HhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC
Confidence 557899999884 2 335555566988999998542 1134445555544431 35555444
Q ss_pred cCCCcC--CCCccEEEEc
Q 025428 222 VLDTKL--ERQFQLVMDK 237 (253)
Q Consensus 222 ~~~~~~--~~~fD~Vi~~ 237 (253)
+.+... -..||+|++.
T Consensus 100 ~~~~~~~~~~~~dvVi~~ 117 (197)
T cd01492 100 ISEKPEEFFSQFDVVVAT 117 (197)
T ss_pred ccccHHHHHhCCCEEEEC
Confidence 433211 2679999974
No 396
>PRK06914 short chain dehydrogenase; Provisional
Probab=70.52 E-value=29 Score=29.92 Aligned_cols=72 Identities=17% Similarity=0.116 Sum_probs=45.1
Q ss_pred CCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcC----------CC
Q 025428 165 SWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKL----------ER 229 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~----------~~ 229 (253)
++++|-.|+ +|.++.. |+++|+ +|++++.+++.++...+.....+. .++.++.+|+.+... -+
T Consensus 3 ~k~~lItGa-sg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~ 80 (280)
T PRK06914 3 KKIAIVTGA-SSGFGLLTTLELAKKGY-LVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIG 80 (280)
T ss_pred CCEEEEECC-CchHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcC
Confidence 356777775 4444444 445576 899999988777666554444333 268899999977431 03
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
..|.|+.+.
T Consensus 81 ~id~vv~~a 89 (280)
T PRK06914 81 RIDLLVNNA 89 (280)
T ss_pred CeeEEEECC
Confidence 567776543
No 397
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=70.22 E-value=29 Score=29.09 Aligned_cols=72 Identities=13% Similarity=0.108 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCcHHH----HHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLL----QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~----~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|=.|+. |.++ ..|+++|. +|++++.++.-++.....+.. + .++.++.+|+.+... -
T Consensus 4 ~~~~vlItGas-g~iG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 79 (251)
T PRK07231 4 EGKVAIVTGAS-SGIGEGIARRFAAEGA-RVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAALERF 79 (251)
T ss_pred CCcEEEEECCC-ChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 45677777754 3333 44455577 799999999777665555433 2 257889999877531 0
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+.+|+|+.+..
T Consensus 80 ~~~d~vi~~ag 90 (251)
T PRK07231 80 GSVDILVNNAG 90 (251)
T ss_pred CCCCEEEECCC
Confidence 35788887543
No 398
>PRK05854 short chain dehydrogenase; Provisional
Probab=70.21 E-value=31 Score=30.71 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|++.|. ++..|+++|+ +|+.+..+++..+.+.+.+.... -.++.++..|+.+..- .
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 56788877775544 2344455676 89999999887776666554332 1258899999977531 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+++.+.-.
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468988876543
No 399
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=69.97 E-value=30 Score=29.28 Aligned_cols=74 Identities=15% Similarity=0.210 Sum_probs=47.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
.++++|=.|++.|. +...|+++|+ +|+.++.++..++...+.+...+ .++.++..|+.+... -+
T Consensus 8 ~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 85 (254)
T PRK08085 8 AGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITAERAELAVAKLRQEG-IKAHAAPFNVTHKQEVEAAIEHIEKDIG 85 (254)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHhcC
Confidence 46678888855433 2344445576 89999999877766655554443 257778888876420 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
.+|+++.+..
T Consensus 86 ~id~vi~~ag 95 (254)
T PRK08085 86 PIDVLINNAG 95 (254)
T ss_pred CCCEEEECCC
Confidence 5788887654
No 400
>PRK07774 short chain dehydrogenase; Provisional
Probab=69.96 E-value=31 Score=29.02 Aligned_cols=73 Identities=14% Similarity=0.147 Sum_probs=47.2
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.| |+|.++..++ ++|. +|++++.++..+....+.+...+ .++.++..|+.+... -
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 81 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADATVSAF 81 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 456788777 5556555555 4466 89999999876655555444332 256788889877531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+|+.+..
T Consensus 82 ~~id~vi~~ag 92 (250)
T PRK07774 82 GGIDYLVNNAA 92 (250)
T ss_pred CCCCEEEECCC
Confidence 35788887554
No 401
>PRK06720 hypothetical protein; Provisional
Probab=69.82 E-value=38 Score=27.54 Aligned_cols=75 Identities=17% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---------C-C-C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------L-E-R 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---------~-~-~ 229 (253)
+++.+|-.|.+.|. +...|++.|+ +|+.+|.++..++...+.+...+. .+.++..|+.+.. . . +
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~v~~~~~~~G 92 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDIDQESGQATVEEITNLGG-EALFVSYDMEKQGDWQRVISITLNAFS 92 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46678888876544 3445556676 899999998877665555443342 4667788886542 0 1 4
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
..|+++.+.-+
T Consensus 93 ~iDilVnnAG~ 103 (169)
T PRK06720 93 RIDMLFQNAGL 103 (169)
T ss_pred CCCEEEECCCc
Confidence 67888876543
No 402
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=69.81 E-value=9.1 Score=31.83 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=21.9
Q ss_pred EEEEcCC-Cc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428 168 VLDIGTG-NG-LLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 168 VLDiGcG-tG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~ 205 (253)
|-=+|.| .| .++..|++.|+ +|+|+|++++-++..++
T Consensus 3 I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~ 41 (185)
T PF03721_consen 3 IAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNN 41 (185)
T ss_dssp EEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHT
T ss_pred EEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhh
Confidence 4445555 23 23456666787 99999999998776653
No 403
>PRK08328 hypothetical protein; Provisional
Probab=69.72 E-value=18 Score=31.18 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=25.0
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeC
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDY 195 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~ 195 (253)
...+|+=+||| .|. ++..|+..|..+++.+|.
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~ 59 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDE 59 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 55789999998 454 466677779889999994
No 404
>PRK05650 short chain dehydrogenase; Provisional
Probab=69.66 E-value=29 Score=29.77 Aligned_cols=70 Identities=17% Similarity=0.163 Sum_probs=45.4
Q ss_pred EEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428 167 SVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f 231 (253)
+||-.|+ +|.++.. |+++|. +|+.++.+.+-++...+.+...+ .++.++.+|+.+... -+.+
T Consensus 2 ~vlVtGa-sggIG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i 78 (270)
T PRK05650 2 RVMITGA-ASGLGRAIALRWAREGW-RLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDYSQLTALAQACEEKWGGI 78 (270)
T ss_pred EEEEecC-CChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 5666665 4444444 445566 89999999877776666555444 267888999876421 1368
Q ss_pred cEEEEccc
Q 025428 232 QLVMDKGT 239 (253)
Q Consensus 232 D~Vi~~~~ 239 (253)
|+++.+.-
T Consensus 79 d~lI~~ag 86 (270)
T PRK05650 79 DVIVNNAG 86 (270)
T ss_pred CEEEECCC
Confidence 88887543
No 405
>PRK08251 short chain dehydrogenase; Provisional
Probab=69.64 E-value=30 Score=29.12 Aligned_cols=72 Identities=15% Similarity=0.019 Sum_probs=47.3
Q ss_pred CEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC-----------CC
Q 025428 166 WSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++|-.| |+|.++..++ ++|. +|+.++.++..++.....+.... -.++.++.+|+.+... -+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 80 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGR-DLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELG 80 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 4677777 4666665555 4465 89999999988776665544321 1268889999987531 13
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+..
T Consensus 81 ~id~vi~~ag 90 (248)
T PRK08251 81 GLDRVIVNAG 90 (248)
T ss_pred CCCEEEECCC
Confidence 5788877653
No 406
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=69.62 E-value=13 Score=34.45 Aligned_cols=73 Identities=22% Similarity=0.194 Sum_probs=44.5
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS-------------------EDAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s-------------------~~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
...+||=+||| .|. ++..|+..|..+++.+|.+ ..-.+.+.+++.+.+. .++......
T Consensus 134 ~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~ 213 (376)
T PRK08762 134 LEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQER 213 (376)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56789999998 455 5666777798899999987 2334555555544332 134444433
Q ss_pred cCCCc---CCCCccEEEE
Q 025428 222 VLDTK---LERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~---~~~~fD~Vi~ 236 (253)
+.... +-..+|+|+.
T Consensus 214 ~~~~~~~~~~~~~D~Vv~ 231 (376)
T PRK08762 214 VTSDNVEALLQDVDVVVD 231 (376)
T ss_pred CChHHHHHHHhCCCEEEE
Confidence 32211 1146898886
No 407
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=69.54 E-value=5.5 Score=39.41 Aligned_cols=35 Identities=31% Similarity=0.301 Sum_probs=29.3
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCH
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSE 197 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~ 197 (253)
.+...|||+||..|.++...++. +. +-|+|+|+-|
T Consensus 43 ~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 43 EKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred cccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 46789999999999999999887 32 3799999866
No 408
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=69.37 E-value=10 Score=34.21 Aligned_cols=43 Identities=21% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~ 205 (253)
.++.+||-+||| .|.++..++++ |..+|+++|.+++-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 567899999986 44455555653 55689999999988888764
No 409
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=69.29 E-value=28 Score=27.07 Aligned_cols=71 Identities=20% Similarity=0.317 Sum_probs=41.1
Q ss_pred EEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC--------------HH-----HHHHHHHHHHhcCC-CceEEEEeccCC
Q 025428 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS--------------ED-----AINLAQSLANRDGF-SCIKFLVDDVLD 224 (253)
Q Consensus 167 ~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s--------------~~-----~l~~ar~~~~~~g~-~~i~~~~~D~~~ 224 (253)
+|+=+||| .|. ++..|+..|..+++.+|.+ ++ -.+.++++++..+. -+++.+...+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 47778887 444 4556666688889999865 22 13444455544432 134455544433
Q ss_pred Cc---CCCCccEEEEc
Q 025428 225 TK---LERQFQLVMDK 237 (253)
Q Consensus 225 ~~---~~~~fD~Vi~~ 237 (253)
.. +-..+|+|++.
T Consensus 81 ~~~~~~~~~~diVi~~ 96 (143)
T cd01483 81 DNLDDFLDGVDLVIDA 96 (143)
T ss_pred hhHHHHhcCCCEEEEC
Confidence 21 12679999973
No 410
>PRK12829 short chain dehydrogenase; Provisional
Probab=69.19 E-value=28 Score=29.44 Aligned_cols=71 Identities=20% Similarity=0.220 Sum_probs=46.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------
Q 025428 163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------- 227 (253)
.+++++|-.|++ |.++..++ ++|+ +|++++.+++.++...+... +. ++.++.+|+.+...
T Consensus 9 ~~~~~vlItGa~-g~iG~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~~~--~~-~~~~~~~D~~~~~~~~~~~~~~~~~ 83 (264)
T PRK12829 9 LDGLRVLVTGGA-SGIGRAIAEAFAEAGA-RVHVCDVSEAALAATAARLP--GA-KVTATVADVADPAQVERVFDTAVER 83 (264)
T ss_pred cCCCEEEEeCCC-CcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHh--cC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence 366789988875 55554444 4477 79999999877665544332 11 56888889876431
Q ss_pred CCCccEEEEcc
Q 025428 228 ERQFQLVMDKG 238 (253)
Q Consensus 228 ~~~fD~Vi~~~ 238 (253)
-+.+|.|+...
T Consensus 84 ~~~~d~vi~~a 94 (264)
T PRK12829 84 FGGLDVLVNNA 94 (264)
T ss_pred hCCCCEEEECC
Confidence 13578887644
No 411
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=69.18 E-value=7.6 Score=33.01 Aligned_cols=58 Identities=21% Similarity=0.235 Sum_probs=42.0
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~----g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~ 225 (253)
.+...|+++|+--|.-++++|.. |- -+|+++||+-..++-+... .++|.|+.++-.++
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dp 130 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDP 130 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCH
Confidence 46679999999999988888865 41 2899999987655433322 35678888877665
No 412
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=68.83 E-value=14 Score=32.56 Aligned_cols=43 Identities=33% Similarity=0.440 Sum_probs=34.0
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
..++.+||..|+| .|..+..+++. |. +|++++.++...+.+++
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~-~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGA-AVIAVDIKEEKLELAKE 207 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence 4567788888876 47788888876 65 79999999998887755
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=68.53 E-value=19 Score=31.74 Aligned_cols=72 Identities=15% Similarity=0.203 Sum_probs=42.4
Q ss_pred CCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC-C---CCccEEE
Q 025428 165 SWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-E---RQFQLVM 235 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~-~---~~fD~Vi 235 (253)
+++||=.| |+|.++..++++ |. +|++++.++.............+ ..+++++.+|+.+... . ..+|.|+
T Consensus 4 ~~~ilVtG-atGfIG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vi 81 (322)
T PLN02662 4 GKVVCVTG-ASGYIASWLVKLLLQRGY-TVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVF 81 (322)
T ss_pred CCEEEEEC-ChHHHHHHHHHHHHHCCC-EEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEE
Confidence 45777666 477777666654 66 89888877543322222111112 1368999999987531 1 3467776
Q ss_pred Ecc
Q 025428 236 DKG 238 (253)
Q Consensus 236 ~~~ 238 (253)
-..
T Consensus 82 h~A 84 (322)
T PLN02662 82 HTA 84 (322)
T ss_pred EeC
Confidence 543
No 414
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=68.46 E-value=7.8 Score=34.87 Aligned_cols=79 Identities=20% Similarity=0.227 Sum_probs=47.7
Q ss_pred EcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcC-CCceE----EEEeccCCCc-----CC-CCccEEE
Q 025428 171 IGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDG-FSCIK----FLVDDVLDTK-----LE-RQFQLVM 235 (253)
Q Consensus 171 iGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~----~~~~D~~~~~-----~~-~~fD~Vi 235 (253)
|=.|+|.++..|.++ +.++++.+|.++..+...++.+.... -.++. .+.+|+.+.. +. ...|+|+
T Consensus 3 VTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVf 82 (293)
T PF02719_consen 3 VTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVF 82 (293)
T ss_dssp EETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEE
T ss_pred EEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEE
Confidence 345889998888876 55689999999999998888874321 12344 4588987754 22 4789999
Q ss_pred EccccceeccCCCC
Q 025428 236 DKGTLDAIGLHPDG 249 (253)
Q Consensus 236 ~~~~l~~i~~~pd~ 249 (253)
--..+-|+.+-.++
T Consensus 83 HaAA~KhVpl~E~~ 96 (293)
T PF02719_consen 83 HAAALKHVPLMEDN 96 (293)
T ss_dssp E------HHHHCCC
T ss_pred EChhcCCCChHHhC
Confidence 88888777664443
No 415
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=68.35 E-value=13 Score=33.98 Aligned_cols=46 Identities=28% Similarity=0.266 Sum_probs=34.2
Q ss_pred cCCCCCEEEEEcCCCcHHH-HHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTGNGLLL-QELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 161 ~~~~~~~VLDiGcGtG~~~-~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
+..++.++.-+|+|.=.++ ..-++. |+++++|||++++-.+.|++.
T Consensus 189 kv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~f 236 (375)
T KOG0022|consen 189 KVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEF 236 (375)
T ss_pred ccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhc
Confidence 3357788888888754443 334443 888999999999999988874
No 416
>PRK08267 short chain dehydrogenase; Provisional
Probab=68.32 E-value=27 Score=29.68 Aligned_cols=71 Identities=13% Similarity=0.180 Sum_probs=45.7
Q ss_pred CEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC------------CCC
Q 025428 166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------ERQ 230 (253)
Q Consensus 166 ~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~------------~~~ 230 (253)
+++|-.|++.|. ++..++++|. +|+.++.+++.++....... + .++.++++|+.+... .++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~-~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG--A-GNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc--C-CceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 357777765432 2344555676 89999999887776655432 2 368899999987430 245
Q ss_pred ccEEEEcccc
Q 025428 231 FQLVMDKGTL 240 (253)
Q Consensus 231 fD~Vi~~~~l 240 (253)
+|+|+.+...
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7888875543
No 417
>PRK08303 short chain dehydrogenase; Provisional
Probab=68.04 E-value=27 Score=31.09 Aligned_cols=73 Identities=16% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCH----------HHHHHHHHHHHhcCCCceEEEEeccCCCcC---
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE----------DAINLAQSLANRDGFSCIKFLVDDVLDTKL--- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~----------~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--- 227 (253)
+++++|-.|++.|. ++..|++.|+ +|+.++.+. +.++...+.+...+. ++.++++|+.+..-
T Consensus 7 ~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~ 84 (305)
T PRK08303 7 RGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSEYDRPETIEETAELVTAAGG-RGIAVQVDHLVPEQVRA 84 (305)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecccccccccccccchHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHH
Confidence 56789999977664 2444555677 899988873 334444444444442 56788899877530
Q ss_pred --------CCCccEEEEcc
Q 025428 228 --------ERQFQLVMDKG 238 (253)
Q Consensus 228 --------~~~fD~Vi~~~ 238 (253)
-+..|+++.+.
T Consensus 85 ~~~~~~~~~g~iDilVnnA 103 (305)
T PRK08303 85 LVERIDREQGRLDILVNDI 103 (305)
T ss_pred HHHHHHHHcCCccEEEECC
Confidence 14678888764
No 418
>PRK09186 flagellin modification protein A; Provisional
Probab=67.46 E-value=37 Score=28.61 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCc-----CC-----
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTK-----LE----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~-----~~----- 228 (253)
++++||=.|++ |.++.. |++.|+ +|++++.+++.++...+.+... +-..+.++.+|+.+.. +.
T Consensus 3 ~~k~vlItGas-~giG~~~a~~l~~~g~-~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~ 80 (256)
T PRK09186 3 KGKTILITGAG-GLIGSALVKAILEAGG-IVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEK 80 (256)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHH
Confidence 45678888864 344444 444576 8999999988777665555322 2234677889987742 11
Q ss_pred -CCccEEEEcc
Q 025428 229 -RQFQLVMDKG 238 (253)
Q Consensus 229 -~~fD~Vi~~~ 238 (253)
+..|+|+.+.
T Consensus 81 ~~~id~vi~~A 91 (256)
T PRK09186 81 YGKIDGAVNCA 91 (256)
T ss_pred cCCccEEEECC
Confidence 3478888654
No 419
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=67.32 E-value=4.5 Score=36.84 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHH
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~ 201 (253)
...+||--|||.|+++.-|+..|+ .+-|-+.|--|+=
T Consensus 150 ~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli 186 (369)
T KOG2798|consen 150 TKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLI 186 (369)
T ss_pred cCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHH
Confidence 356999999999999999999988 7888888887763
No 420
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.25 E-value=18 Score=32.01 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=48.6
Q ss_pred ccccchHHHHhc----cCCCCCEEEEEcCCCcHHHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEE
Q 025428 149 EDLKSEPVEEND----KYLSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFS-CIKFL 218 (253)
Q Consensus 149 ~~~~~~l~~~l~----~~~~~~~VLDiGcGtG~~~~~la~~----g~-~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~ 218 (253)
+..+.++++... .......++|+|+|+..-+..|... |. .+.+.||+|...++..-+.+...-.. .+.-+
T Consensus 59 TRtEaaIl~~~a~Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l 138 (321)
T COG4301 59 TRTEAAILQARAAEIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNAL 138 (321)
T ss_pred chhHHHHHHHHHHHHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeeh
Confidence 344555554433 2245679999999998877666543 32 38999999999887655544333211 46667
Q ss_pred EeccCC
Q 025428 219 VDDVLD 224 (253)
Q Consensus 219 ~~D~~~ 224 (253)
++|...
T Consensus 139 ~~~~~~ 144 (321)
T COG4301 139 CGDYEL 144 (321)
T ss_pred hhhHHH
Confidence 777654
No 421
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=66.67 E-value=7 Score=35.69 Aligned_cols=72 Identities=22% Similarity=0.254 Sum_probs=42.8
Q ss_pred CEEEEEcCCCcHH----HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEeccCCCcC-----C-CCccE
Q 025428 166 WSVLDIGTGNGLL----LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL-----E-RQFQL 233 (253)
Q Consensus 166 ~~VLDiGcGtG~~----~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~--~~i~~~~~D~~~~~~-----~-~~fD~ 233 (253)
.+||=.| |.|.+ ...|.+.|+ .|+++|.-.+....+-++++..-. ..+.|.++|+.+... . ..||.
T Consensus 3 ~~VLVtG-gaGyiGsht~l~L~~~gy-~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~ 80 (343)
T KOG1371|consen 3 KHVLVTG-GAGYIGSHTVLALLKRGY-GVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDA 80 (343)
T ss_pred cEEEEec-CCcceehHHHHHHHhCCC-cEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCce
Confidence 3566555 44443 355666678 899999644444333333333222 469999999998753 2 45666
Q ss_pred EEEccc
Q 025428 234 VMDKGT 239 (253)
Q Consensus 234 Vi~~~~ 239 (253)
|+-.+.
T Consensus 81 V~Hfa~ 86 (343)
T KOG1371|consen 81 VMHFAA 86 (343)
T ss_pred EEeehh
Confidence 664443
No 422
>PRK05599 hypothetical protein; Provisional
Probab=66.62 E-value=32 Score=29.22 Aligned_cols=70 Identities=19% Similarity=0.173 Sum_probs=45.6
Q ss_pred EEEEEcCCCcHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCcc
Q 025428 167 SVLDIGTGNGLLLQELSK---QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ 232 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~---~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~fD 232 (253)
++|-.|++.|. +..+++ +|. +|+.++.+++.++...+.++..+-..+.++..|+.+... -+..|
T Consensus 2 ~vlItGas~GI-G~aia~~l~~g~-~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 79 (246)
T PRK05599 2 SILILGGTSDI-AGEIATLLCHGE-DVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS 79 (246)
T ss_pred eEEEEeCccHH-HHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence 46666765544 433333 355 899999998888777666655553347888999877531 14678
Q ss_pred EEEEcc
Q 025428 233 LVMDKG 238 (253)
Q Consensus 233 ~Vi~~~ 238 (253)
+++.+.
T Consensus 80 ~lv~na 85 (246)
T PRK05599 80 LAVVAF 85 (246)
T ss_pred EEEEec
Confidence 877654
No 423
>PLN02780 ketoreductase/ oxidoreductase
Probab=66.46 E-value=34 Score=30.74 Aligned_cols=60 Identities=20% Similarity=0.200 Sum_probs=41.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLD 224 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~ 224 (253)
.+..+|-.|++.|. ++..|+++|+ +|+.++.+++.++...+.++... -.++..+..|+.+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCC
Confidence 46788888876553 4555666777 89999999998877766654431 1256777788764
No 424
>PLN02740 Alcohol dehydrogenase-like
Probab=66.34 E-value=13 Score=34.01 Aligned_cols=45 Identities=27% Similarity=0.366 Sum_probs=33.6
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
...++.+||=+|+| .|.++..+++. |..+|+++|.+++.++.+++
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 34678899999875 45555556665 66579999999998888865
No 425
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=66.21 E-value=29 Score=30.05 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=40.9
Q ss_pred EEEEEcCC-CcHH-HHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCCC-ceEEEEeccCC
Q 025428 167 SVLDIGTG-NGLL-LQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGFS-CIKFLVDDVLD 224 (253)
Q Consensus 167 ~VLDiGcG-tG~~-~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~~-~i~~~~~D~~~ 224 (253)
+||=+||| .|.. +..|+..|..+++.+|.+. .-.+.+.+++++.+.. ++.....++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 47778887 4443 4555556888999988521 1234444555444322 46666666632
Q ss_pred ---Cc--CCCCccEEEE
Q 025428 225 ---TK--LERQFQLVMD 236 (253)
Q Consensus 225 ---~~--~~~~fD~Vi~ 236 (253)
.. +-..||+|++
T Consensus 81 ~~~~~~~f~~~~DvVi~ 97 (234)
T cd01484 81 EQDFNDTFFEQFHIIVN 97 (234)
T ss_pred hhhchHHHHhCCCEEEE
Confidence 21 2267999997
No 426
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=66.20 E-value=16 Score=30.04 Aligned_cols=41 Identities=29% Similarity=0.448 Sum_probs=28.2
Q ss_pred EEEEcCCC-c-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428 168 VLDIGTGN-G-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209 (253)
Q Consensus 168 VLDiGcGt-G-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~ 209 (253)
|.=||+|+ | .++..++..|. +|+.+|.+++.++.++++++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHH
Confidence 45567763 2 34555556677 999999999999998887654
No 427
>PRK06181 short chain dehydrogenase; Provisional
Probab=66.12 E-value=39 Score=28.71 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=45.0
Q ss_pred CEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428 166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ 230 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~ 230 (253)
.+||-.| |+|.++..+ +..|. +|++++.++..++...+.+...+ .++.++.+|+.+... -+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~-~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGA-QLVLAARNETRLASLAQELADHG-GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3566566 445555544 44566 89999999877666555554444 268888999877531 035
Q ss_pred ccEEEEcc
Q 025428 231 FQLVMDKG 238 (253)
Q Consensus 231 fD~Vi~~~ 238 (253)
.|+|+.+.
T Consensus 79 id~vi~~a 86 (263)
T PRK06181 79 IDILVNNA 86 (263)
T ss_pred CCEEEECC
Confidence 78888654
No 428
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=66.08 E-value=39 Score=28.65 Aligned_cols=71 Identities=14% Similarity=0.120 Sum_probs=44.6
Q ss_pred CEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcC-----------CC
Q 025428 166 WSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
++||-.|+ +|.++. .|+++|+ +|+.+|.++..++...+.+... +-.++.++.+|+.+... -+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~ 80 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGY-RVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFG 80 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 46788885 455444 4455576 8999999987766555444322 21258889999876421 14
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
..|.|+.+.
T Consensus 81 ~id~vv~~a 89 (259)
T PRK12384 81 RVDLLVYNA 89 (259)
T ss_pred CCCEEEECC
Confidence 568777654
No 429
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=65.93 E-value=21 Score=30.05 Aligned_cols=44 Identities=32% Similarity=0.451 Sum_probs=33.8
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTGN-GLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcGt-G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+||..|+|+ |..+..+++....+|++++.++...+.+++.
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~ 177 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL 177 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh
Confidence 5678999999985 6677777776234999999999887777543
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=65.91 E-value=15 Score=34.66 Aligned_cols=43 Identities=12% Similarity=0.037 Sum_probs=32.8
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
...+++|+=+|+|. |.....+++. |+ +|+.+|.++..+..|+.
T Consensus 199 ~l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 199 MIAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHh
Confidence 35789999999995 5555555554 76 89999999987777765
No 431
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=65.73 E-value=18 Score=35.10 Aligned_cols=41 Identities=27% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 164 ~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
++.+||=+|+|. |..+..+++. |+ .|+++|.+++.++.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence 467999999984 5666666665 66 79999999998777775
No 432
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=65.61 E-value=37 Score=28.60 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=43.7
Q ss_pred EEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428 167 SVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f 231 (253)
++|=.|+ +|.++..+ ++.|. +|+.++.++..++...+.+...+. ++.++.+|+.+... .+..
T Consensus 2 ~~lItG~-sg~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 2 VALVTGG-AQGIGKGIAERLAKDGF-AVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4666674 45555444 44566 899999988766655555544442 68889999876431 1356
Q ss_pred cEEEEcc
Q 025428 232 QLVMDKG 238 (253)
Q Consensus 232 D~Vi~~~ 238 (253)
|+++.+.
T Consensus 79 d~vi~~a 85 (254)
T TIGR02415 79 DVMVNNA 85 (254)
T ss_pred CEEEECC
Confidence 8777654
No 433
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=65.51 E-value=36 Score=29.01 Aligned_cols=72 Identities=21% Similarity=0.345 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|-.|++.|. ++..|++.|+ +|+.++.+.. +...+..+..+ .++.++..|+.+..- -+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 82 (251)
T PRK12481 7 NGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAEA--PETQAQVEALG-RKFHFITADLIQQKDIDSIVSQAVEVMG 82 (251)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCchH--HHHHHHHHHcC-CeEEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 56789988876554 2444555677 8888887642 22333333333 267888999877531 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
+.|+++.+.-
T Consensus 83 ~iD~lv~~ag 92 (251)
T PRK12481 83 HIDILINNAG 92 (251)
T ss_pred CCCEEEECCC
Confidence 6788887653
No 434
>PRK07791 short chain dehydrogenase; Provisional
Probab=65.27 E-value=36 Score=29.78 Aligned_cols=75 Identities=15% Similarity=0.111 Sum_probs=47.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCH---------HHHHHHHHHHHhcCCCceEEEEeccCCCcC----
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE---------DAINLAQSLANRDGFSCIKFLVDDVLDTKL---- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~---------~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---- 227 (253)
.++++|-.|++.|. ++..|++.|+ +|+.++.+. +.++...+.+...+. ++.++..|+.+...
T Consensus 5 ~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~ 82 (286)
T PRK07791 5 DGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGG-EAVANGDDIADWDGAANL 82 (286)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCccccccccchhHHHHHHHHHHhcCC-ceEEEeCCCCCHHHHHHH
Confidence 56788888877664 3445566677 788888764 445544444443332 57788888876420
Q ss_pred -------CCCccEEEEcccc
Q 025428 228 -------ERQFQLVMDKGTL 240 (253)
Q Consensus 228 -------~~~fD~Vi~~~~l 240 (253)
-+..|+++.+.-+
T Consensus 83 ~~~~~~~~g~id~lv~nAG~ 102 (286)
T PRK07791 83 VDAAVETFGGLDVLVNNAGI 102 (286)
T ss_pred HHHHHHhcCCCCEEEECCCC
Confidence 1567888876543
No 435
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=65.15 E-value=33 Score=28.84 Aligned_cols=33 Identities=27% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCCEEEEEcCCC-c-HHHHHHHhcCCCcEEEEeCC
Q 025428 164 SSWSVLDIGTGN-G-LLLQELSKQGFSDLTGVDYS 196 (253)
Q Consensus 164 ~~~~VLDiGcGt-G-~~~~~la~~g~~~v~gvD~s 196 (253)
...+|+=+|||. | .++..|++.|..+++.+|.+
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 557899999983 3 35677777788889999988
No 436
>PRK06138 short chain dehydrogenase; Provisional
Probab=65.15 E-value=42 Score=28.14 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|=.||. |.++.. |+++|+ +|++++.+++.+....+... .+ .++.++.+|+.+... -
T Consensus 4 ~~k~~lItG~s-g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i~~~~ 79 (252)
T PRK06138 4 AGRVAIVTGAG-SGIGRATAKLFAREGA-RVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFVAARW 79 (252)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCC-eEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 45688888874 444443 444576 89999999877665555443 22 258889999877531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+.+|+|+.+..
T Consensus 80 ~~id~vi~~ag 90 (252)
T PRK06138 80 GRLDVLVNNAG 90 (252)
T ss_pred CCCCEEEECCC
Confidence 36788776443
No 437
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=64.94 E-value=23 Score=32.02 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=43.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHH----HHHHHHHHhcCCCceEEEEeccCCCc-C---CCCc
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAI----NLAQSLANRDGFSCIKFLVDDVLDTK-L---ERQF 231 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l----~~ar~~~~~~g~~~i~~~~~D~~~~~-~---~~~f 231 (253)
+.++||=.| |+|.++..++++ |. +|+++|...... .............++.++.+|+.+.. + -..+
T Consensus 14 ~~~~vlVtG-atGfiG~~lv~~L~~~g~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~ 91 (348)
T PRK15181 14 APKRWLITG-VAGFIGSGLLEELLFLNQ-TVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNV 91 (348)
T ss_pred cCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCC
Confidence 446777776 677777666654 55 899999754321 11111111112235889999998753 1 1457
Q ss_pred cEEEEcccc
Q 025428 232 QLVMDKGTL 240 (253)
Q Consensus 232 D~Vi~~~~l 240 (253)
|+|+-....
T Consensus 92 d~ViHlAa~ 100 (348)
T PRK15181 92 DYVLHQAAL 100 (348)
T ss_pred CEEEECccc
Confidence 877765544
No 438
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=64.07 E-value=43 Score=27.89 Aligned_cols=72 Identities=15% Similarity=0.193 Sum_probs=46.8
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEE-eCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGV-DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gv-D~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~----- 228 (253)
.++++|=+|+ +|.++..++ ++|+ +++.+ +.+++.++...+.+...+ .++.++.+|+.+... .
T Consensus 4 ~~~~ilI~Ga-sg~iG~~la~~l~~~g~-~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (247)
T PRK05565 4 MGKVAIVTGA-SGGIGRAIAELLAKEGA-KVVIAYDINEEAAQELLEEIKEEG-GDAIAVKADVSSEEDVENLVEQIVEK 80 (247)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3457777774 566655544 4466 78888 988877766555554433 268899999977531 1
Q ss_pred -CCccEEEEcc
Q 025428 229 -RQFQLVMDKG 238 (253)
Q Consensus 229 -~~fD~Vi~~~ 238 (253)
+.+|+|+.+.
T Consensus 81 ~~~id~vi~~a 91 (247)
T PRK05565 81 FGKIDILVNNA 91 (247)
T ss_pred hCCCCEEEECC
Confidence 2688888654
No 439
>PRK07831 short chain dehydrogenase; Provisional
Probab=63.73 E-value=45 Score=28.39 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=50.2
Q ss_pred CCCEEEEEcC-CC--cH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEeccCCCcC-----------
Q 025428 164 SSWSVLDIGT-GN--GL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL----------- 227 (253)
Q Consensus 164 ~~~~VLDiGc-Gt--G~-~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~~~----------- 227 (253)
.++++|=.|+ |. |. +...|+.+|+ +|+.+|.++..++...+.++. .+..++.++.+|+.+...
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 94 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGA-RVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER 94 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence 4678888885 33 33 3445556677 799999998887777666544 232368888999876420
Q ss_pred CCCccEEEEcccc
Q 025428 228 ERQFQLVMDKGTL 240 (253)
Q Consensus 228 ~~~fD~Vi~~~~l 240 (253)
-+..|+++.+..+
T Consensus 95 ~g~id~li~~ag~ 107 (262)
T PRK07831 95 LGRLDVLVNNAGL 107 (262)
T ss_pred cCCCCEEEECCCC
Confidence 1467888876643
No 440
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=63.71 E-value=41 Score=29.87 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=41.6
Q ss_pred CCCEEEEEcCCCcHH---HHHHHhcCCCcEEEEeCCHHHHHHHHH---HHHhcCCCceEEEEeccCCCc-C---CCCccE
Q 025428 164 SSWSVLDIGTGNGLL---LQELSKQGFSDLTGVDYSEDAINLAQS---LANRDGFSCIKFLVDDVLDTK-L---ERQFQL 233 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~---~~~la~~g~~~v~gvD~s~~~l~~ar~---~~~~~g~~~i~~~~~D~~~~~-~---~~~fD~ 233 (253)
.++++|=+|+| |.- +..++..|+++|+.++.+++..+.+++ .+...+ ..+.+...|+.+.. . -..+|+
T Consensus 125 ~~k~vlI~GAG-GagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~Di 202 (289)
T PRK12548 125 KGKKLTVIGAG-GAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEV-PECIVNVYDLNDTEKLKAEIASSDI 202 (289)
T ss_pred CCCEEEEECCc-HHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcC-CCceeEEechhhhhHHHhhhccCCE
Confidence 56789999986 432 233445688779999998632222332 222222 13344455554321 1 135688
Q ss_pred EEEccccc
Q 025428 234 VMDKGTLD 241 (253)
Q Consensus 234 Vi~~~~l~ 241 (253)
|+..-.+.
T Consensus 203 lINaTp~G 210 (289)
T PRK12548 203 LVNATLVG 210 (289)
T ss_pred EEEeCCCC
Confidence 88755544
No 441
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=63.39 E-value=43 Score=29.61 Aligned_cols=75 Identities=15% Similarity=0.115 Sum_probs=46.8
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC-HHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C
Q 025428 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s-~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~ 228 (253)
..++++|=.|++.|. ++..|+++|+ +|+.+|.+ ...++...+.+...+ .++.++.+|+.+... -
T Consensus 10 l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~~~~~~~~~~~i~~~g-~~~~~~~~Dv~d~~~~~~~~~~~~~~ 87 (306)
T PRK07792 10 LSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVASALDASDVLDEIRAAG-AKAVAVAGDISQRATADELVATAVGL 87 (306)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCchhHHHHHHHHHHhcC-CeEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 356788888877654 3455666677 89988875 334444444444334 267888999876420 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 88 g~iD~li~nAG 98 (306)
T PRK07792 88 GGLDIVVNNAG 98 (306)
T ss_pred CCCCEEEECCC
Confidence 45788876553
No 442
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=63.09 E-value=49 Score=28.03 Aligned_cols=72 Identities=15% Similarity=0.107 Sum_probs=44.4
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|=.|++.|. ++..|+++|+ +|+.++.++. +....+.+...+. ++.++.+|+.+... .+
T Consensus 7 ~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~~-~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~ 83 (260)
T PRK12823 7 AGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSEL-VHEVAAELRAAGG-EALALTADLETYAGAQAAMAAAVEAFG 83 (260)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCchH-HHHHHHHHHhcCC-eEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence 45688888865443 3444555677 8999999864 3333333333332 57788899877420 14
Q ss_pred CccEEEEcc
Q 025428 230 QFQLVMDKG 238 (253)
Q Consensus 230 ~fD~Vi~~~ 238 (253)
.+|+++.+.
T Consensus 84 ~id~lv~nA 92 (260)
T PRK12823 84 RIDVLINNV 92 (260)
T ss_pred CCeEEEECC
Confidence 678887654
No 443
>PRK05875 short chain dehydrogenase; Provisional
Probab=63.00 E-value=50 Score=28.32 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC-----C-----
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL-----E----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~-----~----- 228 (253)
+++++|-.|++ |.++..+ +++|+ +|++++.+++.++...+.+...+ ..++.++.+|+.+... .
T Consensus 6 ~~k~vlItGas-g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 83 (276)
T PRK05875 6 QDRTYLVTGGG-SGIGKGVAAGLVAAGA-AVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAW 83 (276)
T ss_pred CCCEEEEECCC-cHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 45788888854 3444444 44577 89999998876655544443322 1368888999876431 1
Q ss_pred -CCccEEEEcc
Q 025428 229 -RQFQLVMDKG 238 (253)
Q Consensus 229 -~~fD~Vi~~~ 238 (253)
+..|+++.+.
T Consensus 84 ~~~~d~li~~a 94 (276)
T PRK05875 84 HGRLHGVVHCA 94 (276)
T ss_pred cCCCCEEEECC
Confidence 3578888654
No 444
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=62.88 E-value=8.5 Score=36.03 Aligned_cols=77 Identities=17% Similarity=0.212 Sum_probs=52.8
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH-------hcCC--CceEEEEeccCCCcC----C
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKL----E 228 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~-------~~g~--~~i~~~~~D~~~~~~----~ 228 (253)
.++..-.|+|+|.|....+++.. +.+.-+|+++....-+.+..+.. ..|- ..++++++++..... .
T Consensus 191 g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI~ 270 (419)
T KOG3924|consen 191 GPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEIQ 270 (419)
T ss_pred CCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHHh
Confidence 56789999999999998888877 55678899886655444443322 2232 248899999877542 2
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
...++|+.+.+
T Consensus 271 ~eatvi~vNN~ 281 (419)
T KOG3924|consen 271 TEATVIFVNNV 281 (419)
T ss_pred hcceEEEEecc
Confidence 45677776553
No 445
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=62.84 E-value=22 Score=32.45 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=34.4
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
...++.+||=.|+| .|.++..+++. |..+|+++|.+++.++.+++.
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~ 229 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKL 229 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh
Confidence 34567899988875 35566666766 665799999999988888653
No 446
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=62.47 E-value=24 Score=32.75 Aligned_cols=72 Identities=15% Similarity=0.260 Sum_probs=45.2
Q ss_pred CCCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHH--HHHHHHhcCCCceEEEEeccCCCcC-----CC--
Q 025428 163 LSSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINL--AQSLANRDGFSCIKFLVDDVLDTKL-----ER-- 229 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~--ar~~~~~~g~~~i~~~~~D~~~~~~-----~~-- 229 (253)
..+.+||-+| |+|.++..+++ +|+ +|++++.++..+.. ....... ...+++++.+|+.+... .+
T Consensus 58 ~~~~kVLVtG-atG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d~~~l~~~~~~~~ 134 (390)
T PLN02657 58 PKDVTVLVVG-ATGYIGKFVVRELVRRGY-NVVAVAREKSGIRGKNGKEDTKK-ELPGAEVVFGDVTDADSLRKVLFSEG 134 (390)
T ss_pred CCCCEEEEEC-CCcHHHHHHHHHHHHCCC-EEEEEEechhhccccchhhHHhh-hcCCceEEEeeCCCHHHHHHHHHHhC
Confidence 4567888777 68887766654 466 89999988754321 0111111 11368899999987531 22
Q ss_pred -CccEEEEc
Q 025428 230 -QFQLVMDK 237 (253)
Q Consensus 230 -~fD~Vi~~ 237 (253)
.+|+|+.+
T Consensus 135 ~~~D~Vi~~ 143 (390)
T PLN02657 135 DPVDVVVSC 143 (390)
T ss_pred CCCcEEEEC
Confidence 58988863
No 447
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=62.42 E-value=46 Score=29.56 Aligned_cols=74 Identities=11% Similarity=0.051 Sum_probs=47.4
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|+. |.++.. |+++|+ +|+.++.++...+.+.+.+...+ .++.++..|+.+... .
T Consensus 5 ~~k~vlVTGas-~gIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 81 (322)
T PRK07453 5 AKGTVIITGAS-SGVGLYAAKALAKRGW-HVIMACRNLKKAEAAAQELGIPP-DSYTIIHIDLGDLDSVRRFVDDFRALG 81 (322)
T ss_pred CCCEEEEEcCC-ChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhhccC-CceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 45678877754 444444 445576 89999998877665555443222 258888999877531 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+++.+.-+
T Consensus 82 ~~iD~li~nAg~ 93 (322)
T PRK07453 82 KPLDALVCNAAV 93 (322)
T ss_pred CCccEEEECCcc
Confidence 357988877643
No 448
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=62.36 E-value=27 Score=32.44 Aligned_cols=73 Identities=22% Similarity=0.253 Sum_probs=44.6
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC-------------------HHHHHHHHHHHHhcCC-CceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS-------------------EDAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s-------------------~~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
...+||=+||| .|. .+..|+..|..+++.+|.+ ..-.+.+++++.+.+. -+++.+...
T Consensus 40 ~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~ 119 (370)
T PRK05600 40 HNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER 119 (370)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee
Confidence 56799999998 333 4666667788899999965 2234455555544432 145555544
Q ss_pred cCCCcC---CCCccEEEE
Q 025428 222 VLDTKL---ERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~~---~~~fD~Vi~ 236 (253)
+..... -..||+|+.
T Consensus 120 i~~~~~~~~~~~~DlVid 137 (370)
T PRK05600 120 LTAENAVELLNGVDLVLD 137 (370)
T ss_pred cCHHHHHHHHhCCCEEEE
Confidence 432111 156899886
No 449
>PLN02427 UDP-apiose/xylose synthase
Probab=62.04 E-value=21 Score=32.67 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEE
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLV 234 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~V 234 (253)
.+..+||=.| |+|.++..+++. |..+|+++|.+...+..........-..+++++.+|+.+... -..+|+|
T Consensus 12 ~~~~~VlVTG-gtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~V 90 (386)
T PLN02427 12 IKPLTICMIG-AGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLT 90 (386)
T ss_pred ccCcEEEEEC-CcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEE
Confidence 3456788554 788887776653 323899999876543322111000001268999999987531 1347877
Q ss_pred EEcc
Q 025428 235 MDKG 238 (253)
Q Consensus 235 i~~~ 238 (253)
+-..
T Consensus 91 iHlA 94 (386)
T PLN02427 91 INLA 94 (386)
T ss_pred EEcc
Confidence 7543
No 450
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=61.91 E-value=21 Score=31.59 Aligned_cols=41 Identities=29% Similarity=0.375 Sum_probs=31.0
Q ss_pred CEEEEEcCCC--cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHH
Q 025428 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLA 207 (253)
Q Consensus 166 ~~VLDiGcGt--G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~ 207 (253)
.+|.=||+|+ +.++..++..|. +|+.+|.+++.++.+++++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i 46 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELI 46 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHH
Confidence 4678888883 345666667777 8999999999998776644
No 451
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=61.84 E-value=47 Score=28.27 Aligned_cols=72 Identities=14% Similarity=0.211 Sum_probs=46.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|=.|++.|. ++..|++.|+ +|+.++.+++.++...+.. + .++.++++|+.+... .+
T Consensus 5 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g 79 (263)
T PRK06200 5 HGQVALITGGGSGIGRALVERFLAEGA-RVAVLERSAEKLASLRQRF---G-DHVLVVEGDVTSYADNQRAVDQTVDAFG 79 (263)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CcceEEEccCCCHHHHHHHHHHHHHhcC
Confidence 45688888865443 2344555577 8999999987776554432 2 257788889876421 14
Q ss_pred CccEEEEcccc
Q 025428 230 QFQLVMDKGTL 240 (253)
Q Consensus 230 ~fD~Vi~~~~l 240 (253)
..|+++.+..+
T Consensus 80 ~id~li~~ag~ 90 (263)
T PRK06200 80 KLDCFVGNAGI 90 (263)
T ss_pred CCCEEEECCCC
Confidence 67888876544
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=61.68 E-value=20 Score=32.35 Aligned_cols=43 Identities=19% Similarity=0.343 Sum_probs=33.7
Q ss_pred CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
..++.+||=+|+|. |.++..+++. |. +|+++|.+++.++.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~G~-~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAMGA-AVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEcCCHHHHHHHHH
Confidence 35678999999864 6666667766 66 79999999998888765
No 453
>PRK06701 short chain dehydrogenase; Provisional
Probab=61.66 E-value=46 Score=29.18 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=44.9
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCH-HHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~-~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+++++|-.|++.|. ++..|+++|+ +|+.++.++ ..++...+.++..+ .++.++.+|+.+... -
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 46788888865443 3444555676 888888875 33443344444334 267889999876431 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+|+.+..
T Consensus 123 ~~iD~lI~~Ag 133 (290)
T PRK06701 123 GRLDILVNNAA 133 (290)
T ss_pred CCCCEEEECCc
Confidence 35788876543
No 454
>PRK06940 short chain dehydrogenase; Provisional
Probab=61.63 E-value=49 Score=28.72 Aligned_cols=69 Identities=20% Similarity=0.250 Sum_probs=44.3
Q ss_pred EEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------CCCccE
Q 025428 167 SVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------ERQFQL 233 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~~~fD~ 233 (253)
.+|=-|+ |.++..+++. |. +|+.++.++..++...+.++..+. ++.++.+|+.+... -+..|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGK-KVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555554 4566666554 55 899999998777666555544442 67888899877421 145788
Q ss_pred EEEccc
Q 025428 234 VMDKGT 239 (253)
Q Consensus 234 Vi~~~~ 239 (253)
++.+.-
T Consensus 80 li~nAG 85 (275)
T PRK06940 80 LVHTAG 85 (275)
T ss_pred EEECCC
Confidence 776553
No 455
>PRK09135 pteridine reductase; Provisional
Probab=61.62 E-value=55 Score=27.26 Aligned_cols=74 Identities=12% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCC-HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s-~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~----- 228 (253)
.+.++|-.|+ +|.++..++ ++|+ +|++++.+ +.-++.....+...+..++.++.+|+.+... .
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~ 82 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGY-RVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAA 82 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 3468898886 456555544 4566 89999975 3334443333333222357889999977431 1
Q ss_pred -CCccEEEEccc
Q 025428 229 -RQFQLVMDKGT 239 (253)
Q Consensus 229 -~~fD~Vi~~~~ 239 (253)
+..|+|+.+..
T Consensus 83 ~~~~d~vi~~ag 94 (249)
T PRK09135 83 FGRLDALVNNAS 94 (249)
T ss_pred cCCCCEEEECCC
Confidence 34688776543
No 456
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=61.50 E-value=20 Score=32.71 Aligned_cols=44 Identities=32% Similarity=0.335 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
..++.+||=.|+| .|.++..+++. |+++|+++|.+++.++.+++
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 3567788888875 45566666666 66579999999998888865
No 457
>PRK06198 short chain dehydrogenase; Provisional
Probab=61.39 E-value=56 Score=27.63 Aligned_cols=73 Identities=12% Similarity=0.077 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|++ |.++..+ +++|+..|+.++.+++.+......+...+ .++.++..|+.+... -
T Consensus 5 ~~k~vlItGa~-g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (260)
T PRK06198 5 DGKVALVTGGT-QGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALG-AKAVFVQADLSDVEDCRRVVAAADEAF 82 (260)
T ss_pred CCcEEEEeCCC-chHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 56788888754 4454444 44577449999998766654444443333 257788889876421 0
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|.++.+.
T Consensus 83 g~id~li~~a 92 (260)
T PRK06198 83 GRLDALVNAA 92 (260)
T ss_pred CCCCEEEECC
Confidence 3578877654
No 458
>PRK08226 short chain dehydrogenase; Provisional
Probab=61.01 E-value=51 Score=27.97 Aligned_cols=73 Identities=21% Similarity=0.257 Sum_probs=45.2
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|+. |.++..+ +++|+ +|+.++.++...+.+.+. ...+ .++.++.+|+.+... .
T Consensus 5 ~~~~~lItG~s-~giG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~-~~~~-~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 80 (263)
T PRK08226 5 TGKTALITGAL-QGIGEGIARVFARHGA-NLILLDISPEIEKLADEL-CGRG-HRCTAVVADVRDPASVAAAIKRAKEKE 80 (263)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHH-HHhC-CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45788877764 5554444 44576 799999988654444333 2223 257788899877421 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+++.+...
T Consensus 81 ~~id~vi~~ag~ 92 (263)
T PRK08226 81 GRIDILVNNAGV 92 (263)
T ss_pred CCCCEEEECCCc
Confidence 357888876543
No 459
>PRK07775 short chain dehydrogenase; Provisional
Probab=60.88 E-value=57 Score=28.15 Aligned_cols=72 Identities=13% Similarity=0.034 Sum_probs=45.9
Q ss_pred CCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
+.+++|=.|+ +|.++..+++ +|+ +|+.++.+.+.++.....+...+. ++.++.+|+.+... -
T Consensus 9 ~~~~vlVtGa-~g~iG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~ 85 (274)
T PRK07775 9 DRRPALVAGA-SSGIGAATAIELAAAGF-PVALGARRVEKCEELVDKIRADGG-EAVAFPLDVTDPDSVKSFVAQAEEAL 85 (274)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHHHHhc
Confidence 4457887775 5666655554 476 888888887766555544444332 57888899876431 1
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|.++.+.
T Consensus 86 ~~id~vi~~A 95 (274)
T PRK07775 86 GEIEVLVSGA 95 (274)
T ss_pred CCCCEEEECC
Confidence 3568777655
No 460
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=60.73 E-value=21 Score=31.67 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=32.2
Q ss_pred CEEEEEcCC--CcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428 166 WSVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 166 ~~VLDiGcG--tG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
.+|-=||+| -+.++..++..|. .|+..|.+++.++.+++++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIE 49 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHH
Confidence 367788887 3445666677777 99999999999998776643
No 461
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=60.47 E-value=82 Score=27.75 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=58.0
Q ss_pred CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc-----------
Q 025428 163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK----------- 226 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~----------- 226 (253)
..++.+|--|.++|. ++..|++.|+ +|+.++.+++.++...+.....+.. ++..+.+|+.+.+
T Consensus 6 l~gkvalVTG~s~GIG~aia~~la~~Ga-~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~ 84 (270)
T KOG0725|consen 6 LAGKVALVTGGSSGIGKAIALLLAKAGA-KVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE 84 (270)
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence 467788888887764 5678888877 9999999999998888776665543 5888999987642
Q ss_pred -CCCCccEEEEcccc
Q 025428 227 -LERQFQLVMDKGTL 240 (253)
Q Consensus 227 -~~~~fD~Vi~~~~l 240 (253)
+.++.|+.+.+.-.
T Consensus 85 ~~~GkidiLvnnag~ 99 (270)
T KOG0725|consen 85 KFFGKIDILVNNAGA 99 (270)
T ss_pred HhCCCCCEEEEcCCc
Confidence 13678888876543
No 462
>PRK06196 oxidoreductase; Provisional
Probab=60.44 E-value=42 Score=29.71 Aligned_cols=70 Identities=14% Similarity=0.124 Sum_probs=46.3
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.+++||=.|++ |.++..++ ++|+ +|++++.+++.++...+.+ .++.++.+|+.+... .
T Consensus 25 ~~k~vlITGas-ggIG~~~a~~L~~~G~-~Vv~~~R~~~~~~~~~~~l-----~~v~~~~~Dl~d~~~v~~~~~~~~~~~ 97 (315)
T PRK06196 25 SGKTAIVTGGY-SGLGLETTRALAQAGA-HVIVPARRPDVAREALAGI-----DGVEVVMLDLADLESVRAFAERFLDSG 97 (315)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh-----hhCeEEEccCCCHHHHHHHHHHHHhcC
Confidence 55788888854 55555444 4576 8999999987665544432 246788899887531 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+++.+..+
T Consensus 98 ~~iD~li~nAg~ 109 (315)
T PRK06196 98 RRIDILINNAGV 109 (315)
T ss_pred CCCCEEEECCCC
Confidence 467888876643
No 463
>PRK07832 short chain dehydrogenase; Provisional
Probab=60.43 E-value=52 Score=28.28 Aligned_cols=70 Identities=19% Similarity=0.158 Sum_probs=42.3
Q ss_pred EEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428 167 SVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF 231 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f 231 (253)
++|=.|++ |.++.. ++++|+ +|+.++.+++.++...+.+...+-..+.++.+|+.+... .+..
T Consensus 2 ~vlItGas-~giG~~la~~la~~G~-~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (272)
T PRK07832 2 RCFVTGAA-SGIGRATALRLAAQGA-ELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSM 79 (272)
T ss_pred EEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 45556653 444443 455576 799999998877666555544332235667788866321 1457
Q ss_pred cEEEEcc
Q 025428 232 QLVMDKG 238 (253)
Q Consensus 232 D~Vi~~~ 238 (253)
|+++.+.
T Consensus 80 d~lv~~a 86 (272)
T PRK07832 80 DVVMNIA 86 (272)
T ss_pred CEEEECC
Confidence 8887655
No 464
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=60.30 E-value=23 Score=26.16 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=32.2
Q ss_pred CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG 238 (253)
Q Consensus 166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~ 238 (253)
.+|| +-||+|.-+..++.+ .++.++.+|+ ++++....+.+.... ..+|+|+...
T Consensus 4 ~~IL-l~C~~G~sSS~l~~k-----------------~~~~~~~~gi-~~~v~a~~~~~~~~~~~~~Dvill~p 58 (95)
T TIGR00853 4 TNIL-LLCAAGMSTSLLVNK-----------------MNKAAEEYGV-PVKIAAGSYGAAGEKLDDADVVLLAP 58 (95)
T ss_pred cEEE-EECCCchhHHHHHHH-----------------HHHHHHHCCC-cEEEEEecHHHHHhhcCCCCEEEECc
Confidence 3555 788888666655533 2333444566 567777776554322 4678888643
No 465
>PRK08265 short chain dehydrogenase; Provisional
Probab=60.21 E-value=51 Score=28.16 Aligned_cols=71 Identities=14% Similarity=0.197 Sum_probs=44.7
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|-.|++.|. ++..|++.|+ +|+.++.+++.++...+.. + .++.++.+|+.+... -+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASL---G-ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHh---C-CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 45688888854432 2344455577 8999999986555443322 2 257888999977531 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 5788887653
No 466
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=59.99 E-value=20 Score=31.20 Aligned_cols=44 Identities=32% Similarity=0.385 Sum_probs=31.8
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+||=+|+| .|.++..+++. |..+|+++|.+++.++.+++.
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~ 164 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSF 164 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence 367788888875 45555556655 765699999999888877663
No 467
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=59.80 E-value=22 Score=32.16 Aligned_cols=44 Identities=25% Similarity=0.210 Sum_probs=33.1
Q ss_pred CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
..++.+||=.||| .|.++..+++. |..+|+++|.++..++.+++
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 3567899988875 35556666666 66569999999998888865
No 468
>PRK08628 short chain dehydrogenase; Provisional
Probab=59.78 E-value=55 Score=27.69 Aligned_cols=71 Identities=14% Similarity=0.084 Sum_probs=44.1
Q ss_pred CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC------
Q 025428 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE------ 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~------ 228 (253)
+++++|=.|++ |.++. .|+++|+ +++.++.++..++..+ .+...+ .++.++..|+.+.. +.
T Consensus 6 ~~~~ilItGas-ggiG~~la~~l~~~G~-~v~~~~r~~~~~~~~~-~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 81 (258)
T PRK08628 6 KDKVVIVTGGA-SGIGAAISLRLAEEGA-IPVIFGRSAPDDEFAE-ELRALQ-PRAEFVQVDLTDDAQCRDAVEQTVAKF 81 (258)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCC-cEEEEcCChhhHHHHH-HHHhcC-CceEEEEccCCCHHHHHHHHHHHHHhc
Confidence 56678888764 44444 4445576 7888998887664333 333333 26788999987643 11
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+|+.+.
T Consensus 82 ~~id~vi~~a 91 (258)
T PRK08628 82 GRIDGLVNNA 91 (258)
T ss_pred CCCCEEEECC
Confidence 3578777654
No 469
>PRK05855 short chain dehydrogenase; Validated
Probab=59.74 E-value=48 Score=31.65 Aligned_cols=74 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.+.++|=+|+ +|.++.. |++.|. +|+.++.+...++...+.++..+. ++.++.+|+.+... .
T Consensus 314 ~~~~~lv~G~-s~giG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 390 (582)
T PRK05855 314 SGKLVVVTGA-GSGIGRETALAFAREGA-EVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWVRAEH 390 (582)
T ss_pred CCCEEEEECC-cCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence 3457776665 5555444 445577 799999998887776666555553 68899999987531 1
Q ss_pred CCccEEEEcccc
Q 025428 229 RQFQLVMDKGTL 240 (253)
Q Consensus 229 ~~fD~Vi~~~~l 240 (253)
+..|+++.+.-+
T Consensus 391 g~id~lv~~Ag~ 402 (582)
T PRK05855 391 GVPDIVVNNAGI 402 (582)
T ss_pred CCCcEEEECCcc
Confidence 457888876643
No 470
>PRK07877 hypothetical protein; Provisional
Probab=59.57 E-value=23 Score=35.92 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=45.6
Q ss_pred CCCCEEEEEcCCCcHH-HHHHHhcCC-CcEEEEeCCH------------------HHHHHHHHHHHhcCC-CceEEEEec
Q 025428 163 LSSWSVLDIGTGNGLL-LQELSKQGF-SDLTGVDYSE------------------DAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~-~~~la~~g~-~~v~gvD~s~------------------~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
....+|+=+|||-|.. +..|+..|. .+++-+|.+. .-++.+++++...+. -+|+.+...
T Consensus 105 L~~~~V~IvG~GlGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~ 184 (722)
T PRK07877 105 LGRLRIGVVGLSVGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDG 184 (722)
T ss_pred HhcCCEEEEEecHHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 3567999999998875 566666784 7888888521 223445555544432 146666655
Q ss_pred cCCCcC---CCCccEEEE
Q 025428 222 VLDTKL---ERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~~---~~~fD~Vi~ 236 (253)
+..-.. -..+|+|+.
T Consensus 185 i~~~n~~~~l~~~DlVvD 202 (722)
T PRK07877 185 LTEDNVDAFLDGLDVVVE 202 (722)
T ss_pred CCHHHHHHHhcCCCEEEE
Confidence 543221 146898886
No 471
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=59.31 E-value=21 Score=29.39 Aligned_cols=79 Identities=19% Similarity=0.282 Sum_probs=50.6
Q ss_pred CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCCc---------C-CC
Q 025428 164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTK---------L-ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~~---------~-~~ 229 (253)
....|+.+|||-=.....+.... ..+++-+|. +++++.-++.+...+. .+.+++.+|+.+.. + ++
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~ 156 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPD 156 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TT
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCC
Confidence 33489999999999999998762 336667776 4467666666655432 14668999998642 1 24
Q ss_pred CccEEEEcccccee
Q 025428 230 QFQLVMDKGTLDAI 243 (253)
Q Consensus 230 ~fD~Vi~~~~l~~i 243 (253)
..-++++-+++.++
T Consensus 157 ~ptl~i~Egvl~Yl 170 (183)
T PF04072_consen 157 RPTLFIAEGVLMYL 170 (183)
T ss_dssp SEEEEEEESSGGGS
T ss_pred CCeEEEEcchhhcC
Confidence 56688888888887
No 472
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=59.29 E-value=32 Score=32.18 Aligned_cols=61 Identities=16% Similarity=0.238 Sum_probs=41.5
Q ss_pred EEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CC-CCccEEEE
Q 025428 167 SVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LE-RQFQLVMD 236 (253)
Q Consensus 167 ~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~-~~fD~Vi~ 236 (253)
+|+=+|| |.++..+++. |. .|+.+|.+++.++.+++. ..+.++.+|..+.. .. ..+|.|++
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~-~v~vid~~~~~~~~~~~~------~~~~~~~gd~~~~~~l~~~~~~~a~~vi~ 71 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENN-DVTVIDTDEERLRRLQDR------LDVRTVVGNGSSPDVLREAGAEDADLLIA 71 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------cCEEEEEeCCCCHHHHHHcCCCcCCEEEE
Confidence 4566666 6777766653 55 899999999987776642 14678888887642 11 46777765
No 473
>PRK06197 short chain dehydrogenase; Provisional
Probab=59.14 E-value=62 Score=28.39 Aligned_cols=75 Identities=13% Similarity=0.021 Sum_probs=48.6
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcC-----------
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL----------- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~----------- 227 (253)
.+++||=.|+ +|.++..++ ++|+ +|+.++.+++..+.+.+.+... +-.++.++.+|+.+...
T Consensus 15 ~~k~vlItGa-s~gIG~~~a~~l~~~G~-~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~ 92 (306)
T PRK06197 15 SGRVAVVTGA-NTGLGYETAAALAAKGA-HVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA 92 (306)
T ss_pred CCCEEEEcCC-CCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence 5677886665 455554444 4576 8999999887776665554432 11258889999987531
Q ss_pred CCCccEEEEcccc
Q 025428 228 ERQFQLVMDKGTL 240 (253)
Q Consensus 228 ~~~fD~Vi~~~~l 240 (253)
-+..|+++.+..+
T Consensus 93 ~~~iD~li~nAg~ 105 (306)
T PRK06197 93 YPRIDLLINNAGV 105 (306)
T ss_pred CCCCCEEEECCcc
Confidence 1458988876643
No 474
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=59.13 E-value=25 Score=31.48 Aligned_cols=68 Identities=15% Similarity=0.154 Sum_probs=46.6
Q ss_pred CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcc
Q 025428 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG 238 (253)
Q Consensus 163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~ 238 (253)
.++...+|+|.-.|.++..|.+++- .|++||.-+. ....- ..| .|+....|-+.+.+ ....|-.+|..
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~m-a~sL~----dtg--~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPM-AQSLM----DTG--QVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred cCCceeeecccCCCccchhhhhcce-EEEEeccchh-hhhhh----ccc--ceeeeeccCcccccCCCCCceEEeeh
Confidence 5778999999999999999999966 9999998773 22111 111 35566666655544 35566666543
No 475
>PRK07411 hypothetical protein; Validated
Probab=58.66 E-value=27 Score=32.58 Aligned_cols=74 Identities=24% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCC-CceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
...+||=+||| .|. .+..|+..|..+++-+|.+. .-.+.+++++...+. -+++.+...
T Consensus 37 ~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~ 116 (390)
T PRK07411 37 KAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETR 116 (390)
T ss_pred hcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecc
Confidence 56799999998 444 56777777988999998531 113445555544432 245656555
Q ss_pred cCCCc---CCCCccEEEEc
Q 025428 222 VLDTK---LERQFQLVMDK 237 (253)
Q Consensus 222 ~~~~~---~~~~fD~Vi~~ 237 (253)
+.... +-..||+|+..
T Consensus 117 ~~~~~~~~~~~~~D~Vvd~ 135 (390)
T PRK07411 117 LSSENALDILAPYDVVVDG 135 (390)
T ss_pred cCHHhHHHHHhCCCEEEEC
Confidence 54321 11579999873
No 476
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=58.57 E-value=35 Score=29.49 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=25.2
Q ss_pred CCCEEEEEcCC-CcHH-HHHHHhcCCCcEEEEeCC
Q 025428 164 SSWSVLDIGTG-NGLL-LQELSKQGFSDLTGVDYS 196 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~~-~~~la~~g~~~v~gvD~s 196 (253)
...+||=+||| .|.. +..|++.|..+++-+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 55789999998 5554 566667788899999954
No 477
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=58.23 E-value=46 Score=31.21 Aligned_cols=70 Identities=23% Similarity=0.232 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCcHH--HHHHHhcCCCcEEEEeCCH-HHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428 164 SSWSVLDIGTGNGLL--LQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 238 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~--~~~la~~g~~~v~gvD~s~-~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~ 238 (253)
.+++|+=+|+|...+ +..|++.|+ +|+++|.+. ..+....+.+...+ ++++.+|..+. ..+.+|+|+...
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~-~~~~~d~vv~~~ 76 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEEDQLKEALEELGELG---IELVLGEYPEE-FLEGVDLVVVSP 76 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcC---CEEEeCCcchh-HhhcCCEEEECC
Confidence 467899998876332 344445577 899999985 33333223333333 56776666552 225689888643
No 478
>PLN02253 xanthoxin dehydrogenase
Probab=58.19 E-value=65 Score=27.71 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=46.0
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|-.|+ +|.++..+ +++|+ +|+.++.++...+...+.+.. + .++.++.+|+.+... -
T Consensus 17 ~~k~~lItGa-s~gIG~~la~~l~~~G~-~v~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Dl~d~~~~~~~~~~~~~~~ 92 (280)
T PLN02253 17 LGKVALVTGG-ATGIGESIVRLFHKHGA-KVCIVDLQDDLGQNVCDSLGG-E-PNVCFFHCDVTVEDDVSRAVDFTVDKF 92 (280)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhcC-C-CceEEEEeecCCHHHHHHHHHHHHHHh
Confidence 4567887774 45555444 44576 899999988766554443321 1 358899999987521 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 93 g~id~li~~Ag 103 (280)
T PLN02253 93 GTLDIMVNNAG 103 (280)
T ss_pred CCCCEEEECCC
Confidence 46788887653
No 479
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=58.11 E-value=17 Score=32.20 Aligned_cols=42 Identities=26% Similarity=0.192 Sum_probs=31.1
Q ss_pred CCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
++.+||=+||| .|.++..+++. |+..|+++|.+++.++.+.+
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 46678888875 56677777766 77668889999887776654
No 480
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=57.63 E-value=35 Score=29.61 Aligned_cols=73 Identities=27% Similarity=0.296 Sum_probs=42.9
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCC-CceEEEEec
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGF-SCIKFLVDD 221 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~-~~i~~~~~D 221 (253)
...+||=+||| .|. .+..|+..|..+++-+|.+. .-++.+++++...+. -+++.+...
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~ 110 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINAR 110 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEecc
Confidence 56799999997 444 35556666888899888421 123444555544432 145555544
Q ss_pred cCCCcC---CCCccEEEE
Q 025428 222 VLDTKL---ERQFQLVMD 236 (253)
Q Consensus 222 ~~~~~~---~~~fD~Vi~ 236 (253)
+..... -..||+|+.
T Consensus 111 i~~~~~~~~~~~~DiVi~ 128 (245)
T PRK05690 111 LDDDELAALIAGHDLVLD 128 (245)
T ss_pred CCHHHHHHHHhcCCEEEe
Confidence 433211 157899886
No 481
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=57.39 E-value=12 Score=28.22 Aligned_cols=32 Identities=38% Similarity=0.638 Sum_probs=27.2
Q ss_pred CCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 174 GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 174 GtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
|.|.++..+++. | .+|+++|.++.-++.+++.
T Consensus 1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~~ 33 (130)
T PF00107_consen 1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKEL 33 (130)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHHT
T ss_pred ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHhh
Confidence 468888888888 6 6999999999998888764
No 482
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.09 E-value=63 Score=27.64 Aligned_cols=74 Identities=16% Similarity=0.162 Sum_probs=45.4
Q ss_pred CCCEEEEEcCCCc-HH----HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------
Q 025428 164 SSWSVLDIGTGNG-LL----LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG-~~----~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------- 227 (253)
+++.+|-.|+++| .+ +..|++.|+ +|+.++.++...+..++..+.. ..+.++..|+.+..-
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~ 85 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEEL--DAPIFLPLDVREPGQLEAVFARIAEE 85 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhh--ccceEEecCcCCHHHHHHHHHHHHHH
Confidence 5678999998752 44 445555677 8888898865443333332222 234577788876420
Q ss_pred CCCccEEEEcccc
Q 025428 228 ERQFQLVMDKGTL 240 (253)
Q Consensus 228 ~~~fD~Vi~~~~l 240 (253)
-+..|+++.+.-+
T Consensus 86 ~g~ld~lv~nAg~ 98 (258)
T PRK07533 86 WGRLDFLLHSIAF 98 (258)
T ss_pred cCCCCEEEEcCcc
Confidence 1567988876543
No 483
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=56.95 E-value=27 Score=31.68 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=32.3
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
+..++.+||=.|+| .|.++..+++. |..+|++++.+++.++.+++
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 34677888888864 34445556655 66579999999988887755
No 484
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=56.93 E-value=61 Score=27.41 Aligned_cols=70 Identities=13% Similarity=0.084 Sum_probs=44.6
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.| |+|.++..++ ++|. +|+.++.+.+.++...+.. + .++.++.+|+.+... -
T Consensus 5 ~~~~vlItG-as~~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~---~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (257)
T PRK07067 5 QGKVALLTG-AASGIGEAVAERYLAEGA-RVVIADIKPARARLAALEI---G-PAAIAVSLDVTRQDSIDRIVAAAVERF 78 (257)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHHh---C-CceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 456788777 4455544444 5576 8999999988776554432 2 257888899876421 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+..
T Consensus 79 ~~id~li~~ag 89 (257)
T PRK07067 79 GGIDILFNNAA 89 (257)
T ss_pred CCCCEEEECCC
Confidence 35788776543
No 485
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=56.92 E-value=21 Score=30.37 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=45.7
Q ss_pred CCCCEEEEEcCC-CcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428 163 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240 (253)
Q Consensus 163 ~~~~~VLDiGcG-tG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l 240 (253)
..++++|-+|.- ||.+...+... ..+|+.+|+.+.|-..... ++.|+.+ -.++++.+|+|+..--|
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp~--------~v~Fr~~---~~~~~G~~DlivDlTGl 109 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLPN--------NVKFRNL---LKFIRGEVDLIVDLTGL 109 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCCC--------CccHhhh---cCCCCCceeEEEecccc
Confidence 467799999986 88888888777 5599999999976543332 4556554 11234778888874433
No 486
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=56.92 E-value=66 Score=26.92 Aligned_cols=72 Identities=21% Similarity=0.272 Sum_probs=44.5
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~ 229 (253)
+++++|=.|++.|. +...|+++|+ +|++++.++. ....+..+..+ .++.++..|+.+..- .+
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~~--~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSEP--SETQQQVEALG-RRFLSLTADLSDIEAIKALVDSAVEEFG 79 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCchH--HHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56788888886542 3444555577 8999998752 33333333333 257888999877521 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+..
T Consensus 80 ~~d~li~~ag 89 (248)
T TIGR01832 80 HIDILVNNAG 89 (248)
T ss_pred CCCEEEECCC
Confidence 5788887543
No 487
>PRK05993 short chain dehydrogenase; Provisional
Probab=56.90 E-value=42 Score=29.02 Aligned_cols=65 Identities=12% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------CC
Q 025428 165 SWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------LE 228 (253)
Q Consensus 165 ~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~~ 228 (253)
+++||-.|++ |.++.. |+++|+ +|++++.+++.++.... . .+.++.+|+.+.. ..
T Consensus 4 ~k~vlItGas-ggiG~~la~~l~~~G~-~Vi~~~r~~~~~~~l~~----~---~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 74 (277)
T PRK05993 4 KRSILITGCS-SGIGAYCARALQSDGW-RVFATCRKEEDVAALEA----E---GLEAFQLDYAEPESIAALVAQVLELSG 74 (277)
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHH----C---CceEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578878864 444444 445576 89999999877654432 2 4677888887642 01
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+++.+.
T Consensus 75 g~id~li~~A 84 (277)
T PRK05993 75 GRLDALFNNG 84 (277)
T ss_pred CCccEEEECC
Confidence 3578888764
No 488
>PRK08278 short chain dehydrogenase; Provisional
Probab=56.83 E-value=56 Score=28.18 Aligned_cols=74 Identities=16% Similarity=0.224 Sum_probs=44.8
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHH-------HHHHHHHHHhcCCCceEEEEeccCCCcC-----C
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDA-------INLAQSLANRDGFSCIKFLVDDVLDTKL-----E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~-------l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~ 228 (253)
+++++|=.|++.|. ++..|+++|+ +|+.++.+... ++...+.+...+. ++.++.+|+.+... .
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i~~~~~ 82 (273)
T PRK08278 5 SGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQVAAAVA 82 (273)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHH
Confidence 45688877775443 3344555576 89999987532 3333333333332 68888999877531 1
Q ss_pred ------CCccEEEEccc
Q 025428 229 ------RQFQLVMDKGT 239 (253)
Q Consensus 229 ------~~fD~Vi~~~~ 239 (253)
+.+|+++.+..
T Consensus 83 ~~~~~~g~id~li~~ag 99 (273)
T PRK08278 83 KAVERFGGIDICVNNAS 99 (273)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 36788887654
No 489
>PRK07825 short chain dehydrogenase; Provisional
Probab=55.71 E-value=59 Score=27.86 Aligned_cols=68 Identities=15% Similarity=0.039 Sum_probs=43.5
Q ss_pred CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|++.| ++. .|+++|+ +|+.++.+++.++...+.+ .++.++.+|+.+... -
T Consensus 4 ~~~~ilVtGasgg-iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~ 76 (273)
T PRK07825 4 RGKVVAITGGARG-IGLATARALAALGA-RVAIGDLDEALAKETAAEL-----GLVVGGPLDVTDPASFAAFLDAVEADL 76 (273)
T ss_pred CCCEEEEeCCCch-HHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-----ccceEEEccCCCHHHHHHHHHHHHHHc
Confidence 3567887776544 444 3455577 7999999987766544332 146788888876431 1
Q ss_pred CCccEEEEcc
Q 025428 229 RQFQLVMDKG 238 (253)
Q Consensus 229 ~~fD~Vi~~~ 238 (253)
+..|+++.+.
T Consensus 77 ~~id~li~~a 86 (273)
T PRK07825 77 GPIDVLVNNA 86 (273)
T ss_pred CCCCEEEECC
Confidence 4568887654
No 490
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=55.50 E-value=26 Score=35.50 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=34.5
Q ss_pred CEEEEEcCCC--cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428 166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208 (253)
Q Consensus 166 ~~VLDiGcGt--G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~ 208 (253)
.+|.=||+|+ ..++..++..|. .|+.+|.+++.++.+++++.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHH
Confidence 5789999997 556677777887 99999999999988876653
No 491
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=55.25 E-value=32 Score=30.18 Aligned_cols=38 Identities=26% Similarity=0.373 Sum_probs=29.2
Q ss_pred EEEEEcCC--CcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428 167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 167 ~VLDiGcG--tG~~~~~la~~g~~~v~gvD~s~~~l~~ar~ 205 (253)
+|-=||+| -+.++..++..|. +|+++|++++.++.+++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHH
Confidence 56777887 4556666777777 89999999999977664
No 492
>PLN02827 Alcohol dehydrogenase-like
Probab=55.17 E-value=29 Score=31.87 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=32.1
Q ss_pred cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
...++.+||-.|+| .|.++..+++. |...|+++|.+++.++.+++
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 34678899988874 34445555555 76579999999988877754
No 493
>PRK07201 short chain dehydrogenase; Provisional
Probab=55.09 E-value=65 Score=31.66 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=48.5
Q ss_pred CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428 164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~ 228 (253)
.++++|=.|+ +|.++..+ +++|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+... -
T Consensus 370 ~~k~vlItGa-s~giG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~ 446 (657)
T PRK07201 370 VGKVVLITGA-SSGIGRATAIKVAEAGA-TVFLVARNGEALDELVAEIRAKGG-TAHAYTCDLTDSAAVDHTVKDILAEH 446 (657)
T ss_pred CCCEEEEeCC-CCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 3567776665 44554444 44576 899999999887776665544442 68888999877531 1
Q ss_pred CCccEEEEccc
Q 025428 229 RQFQLVMDKGT 239 (253)
Q Consensus 229 ~~fD~Vi~~~~ 239 (253)
+..|+++.+.-
T Consensus 447 g~id~li~~Ag 457 (657)
T PRK07201 447 GHVDYLVNNAG 457 (657)
T ss_pred CCCCEEEECCC
Confidence 35788887654
No 494
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=55.09 E-value=31 Score=30.56 Aligned_cols=42 Identities=21% Similarity=0.458 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428 164 SSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS 205 (253)
Q Consensus 164 ~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~ 205 (253)
++.+||-.|||. |..+..+++. |..++++++.++...+.+++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~ 208 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA 208 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 677888888775 6676667766 66579999999988886655
No 495
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=54.63 E-value=33 Score=29.35 Aligned_cols=44 Identities=34% Similarity=0.436 Sum_probs=32.5
Q ss_pred CCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428 163 LSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL 206 (253)
Q Consensus 163 ~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~ 206 (253)
.++.+||-.|+|. |..+..+++. |..+|++++.+++.++.+++.
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~ 141 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL 141 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc
Confidence 4677888888764 6666667766 653499999999888877654
No 496
>PRK07806 short chain dehydrogenase; Provisional
Probab=54.49 E-value=85 Score=26.25 Aligned_cols=72 Identities=10% Similarity=0.039 Sum_probs=42.3
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCH-HHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E----- 228 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~-~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~----- 228 (253)
.++++|-.|+ +|.++..++ .+|. +|++++.+. ..++.....++..+ .++.++.+|+.+... .
T Consensus 5 ~~k~vlItGa-sggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~ 81 (248)
T PRK07806 5 PGKTALVTGS-SRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDTAREE 81 (248)
T ss_pred CCcEEEEECC-CCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 4568888885 344444443 4566 788888764 33443333333333 257888999877531 1
Q ss_pred -CCccEEEEcc
Q 025428 229 -RQFQLVMDKG 238 (253)
Q Consensus 229 -~~fD~Vi~~~ 238 (253)
+..|+|+.+.
T Consensus 82 ~~~~d~vi~~a 92 (248)
T PRK07806 82 FGGLDALVLNA 92 (248)
T ss_pred CCCCcEEEECC
Confidence 3578777554
No 497
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=54.40 E-value=61 Score=29.40 Aligned_cols=70 Identities=26% Similarity=0.366 Sum_probs=42.2
Q ss_pred EEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCCH-------------------HHHHHHHHHHHhcCC-CceEEEEeccCC
Q 025428 167 SVLDIGTG-NGL-LLQELSKQGFSDLTGVDYSE-------------------DAINLAQSLANRDGF-SCIKFLVDDVLD 224 (253)
Q Consensus 167 ~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s~-------------------~~l~~ar~~~~~~g~-~~i~~~~~D~~~ 224 (253)
+||=+||| .|. ++..|+..|..+++.+|.+. .-.+.+.+++++.+. -+++....++.+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 47788887 343 45555556888999998421 123445555544332 256667777665
Q ss_pred Cc----CCCCccEEEE
Q 025428 225 TK----LERQFQLVMD 236 (253)
Q Consensus 225 ~~----~~~~fD~Vi~ 236 (253)
.. +-..||+|++
T Consensus 81 ~~~~~~f~~~~DvVv~ 96 (312)
T cd01489 81 PDFNVEFFKQFDLVFN 96 (312)
T ss_pred ccchHHHHhcCCEEEE
Confidence 32 2268999987
No 498
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=54.36 E-value=78 Score=28.06 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC
Q 025428 164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS 196 (253)
Q Consensus 164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s 196 (253)
...+|+=+||| .|. .+..|++.|..+++-+|.+
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 56799999998 454 4566667788899999965
No 499
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=54.35 E-value=68 Score=27.18 Aligned_cols=72 Identities=17% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C------CC
Q 025428 164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L------ER 229 (253)
Q Consensus 164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~------~~ 229 (253)
+++++|-.|+..|. ++..|++.|+ +|+++|.+.. +...+.+...+ .++.++..|+.+.. + .+
T Consensus 9 ~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~~--~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK08993 9 EGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVEP--TETIEQVTALG-RRFLSLTADLRKIDGIPALLERAVAEFG 84 (253)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcch--HHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 56788888875433 2344445576 8999987652 22222233333 25778888987632 1 14
Q ss_pred CccEEEEccc
Q 025428 230 QFQLVMDKGT 239 (253)
Q Consensus 230 ~fD~Vi~~~~ 239 (253)
..|+++.+.-
T Consensus 85 ~~D~li~~Ag 94 (253)
T PRK08993 85 HIDILVNNAG 94 (253)
T ss_pred CCCEEEECCC
Confidence 6788886553
No 500
>PRK06114 short chain dehydrogenase; Provisional
Probab=54.23 E-value=81 Score=26.68 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=45.3
Q ss_pred CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHH-HHHHHHHHHHhcCCCceEEEEeccCCCcC-----------
Q 025428 164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSED-AINLAQSLANRDGFSCIKFLVDDVLDTKL----------- 227 (253)
Q Consensus 164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~-~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------- 227 (253)
+++++|-.|+ +|.++..++ +.|+ +|+.++.+.. .++...+.+...+ .++.++..|+.+...
T Consensus 7 ~~k~~lVtG~-s~gIG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~ 83 (254)
T PRK06114 7 DGQVAFVTGA-GSGIGQRIAIGLAQAGA-DVALFDLRTDDGLAETAEHIEAAG-RRAIQIAADVTSKADLRAAVARTEAE 83 (254)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHH
Confidence 5678887774 444555544 4576 8999998653 3444444444333 257788889876420
Q ss_pred CCCccEEEEcccc
Q 025428 228 ERQFQLVMDKGTL 240 (253)
Q Consensus 228 ~~~fD~Vi~~~~l 240 (253)
-++.|+++.+...
T Consensus 84 ~g~id~li~~ag~ 96 (254)
T PRK06114 84 LGALTLAVNAAGI 96 (254)
T ss_pred cCCCCEEEECCCC
Confidence 1457888876543
Done!