Query 025430
Match_columns 253
No_of_seqs 168 out of 245
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:43:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 7.8E-32 1.7E-36 250.6 22.7 216 22-241 54-318 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 2E-20 4.3E-25 141.6 7.1 83 23-109 2-90 (90)
3 PF12776 Myb_DNA-bind_3: Myb/S 98.6 1.7E-07 3.7E-12 71.6 7.6 68 24-94 1-71 (96)
4 smart00595 MADF subfamily of S 98.5 9E-08 1.9E-12 72.5 4.3 69 33-110 2-85 (89)
5 PF10545 MADF_DNA_bdg: Alcohol 98.2 4.7E-07 1E-11 66.8 1.9 70 33-109 1-85 (85)
6 PF13873 Myb_DNA-bind_5: Myb/S 98.2 5.8E-06 1.3E-10 61.5 7.5 70 21-93 1-77 (78)
7 PF00249 Myb_DNA-binding: Myb- 97.8 3.6E-05 7.8E-10 52.7 5.1 47 23-85 2-48 (48)
8 smart00717 SANT SANT SWI3, AD 97.3 0.00048 1E-08 45.0 4.4 47 23-86 2-48 (49)
9 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.0005 1.1E-08 48.6 4.5 43 25-85 1-44 (60)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.1 0.00099 2.1E-08 42.9 4.6 45 24-85 1-45 (45)
11 PLN03212 Transcription repress 95.4 0.039 8.4E-07 50.9 6.2 54 19-90 75-128 (249)
12 PLN03091 hypothetical protein; 95.2 0.05 1.1E-06 53.8 6.9 54 19-90 64-117 (459)
13 PF04504 DUF573: Protein of un 95.2 0.11 2.4E-06 41.2 7.4 67 23-94 5-71 (98)
14 PLN03212 Transcription repress 93.9 0.12 2.6E-06 47.7 5.7 50 19-84 22-71 (249)
15 PLN03091 hypothetical protein; 89.9 0.41 8.9E-06 47.6 4.5 49 19-83 11-59 (459)
16 KOG0457 Histone acetyltransfer 89.4 7.2 0.00016 38.8 12.5 42 21-79 71-112 (438)
17 KOG1279 Chromatin remodeling f 88.3 0.62 1.3E-05 47.0 4.4 49 18-84 249-297 (506)
18 COG5259 RSC8 RSC chromatin rem 87.4 0.87 1.9E-05 45.7 4.8 46 21-84 278-323 (531)
19 PRK13923 putative spore coat p 83.2 3 6.6E-05 36.6 5.7 58 20-90 3-62 (170)
20 TIGR02894 DNA_bind_RsfA transc 82.7 3.3 7.1E-05 36.2 5.6 60 20-91 2-62 (161)
21 KOG0051 RNA polymerase I termi 82.0 2.4 5.2E-05 43.7 5.2 67 20-94 434-516 (607)
22 PF03353 Lin-8: Ras-mediated v 79.2 4.8 0.0001 37.5 5.9 78 24-106 19-112 (313)
23 KOG0049 Transcription factor, 71.8 6.5 0.00014 41.4 5.0 56 18-89 249-304 (939)
24 KOG4348 Adaptor protein CMS/SE 71.0 18 0.0004 36.6 7.8 55 179-241 569-623 (627)
25 KOG0048 Transcription factor, 68.0 18 0.00038 32.6 6.6 56 19-92 59-115 (238)
26 TIGR01557 myb_SHAQKYF myb-like 67.8 17 0.00038 26.1 5.3 48 21-83 2-52 (57)
27 PF15444 TMEM247: Transmembran 62.1 11 0.00024 33.8 3.9 14 204-217 101-114 (218)
28 PF13404 HTH_AsnC-type: AsnC-t 40.8 45 0.00097 22.4 3.4 24 53-85 19-42 (42)
29 PF06576 DUF1133: Protein of u 35.9 38 0.00082 30.0 3.1 27 55-85 134-160 (176)
30 KOG4661 Hsp27-ERE-TATA-binding 35.0 86 0.0019 33.0 5.8 21 209-230 665-685 (940)
31 KOG0048 Transcription factor, 33.5 42 0.00091 30.2 3.1 44 23-83 10-54 (238)
32 PF13767 DUF4168: Domain of un 32.7 2.1E+02 0.0045 21.3 6.5 46 187-238 5-50 (78)
33 cd07605 I-BAR_IMD Inverse (I)- 32.6 3.5E+02 0.0075 24.6 8.8 69 180-249 62-149 (223)
34 PF04568 IATP: Mitochondrial A 30.4 2.3E+02 0.0049 22.9 6.5 40 187-226 46-91 (100)
35 PRK13271 treA trehalase; Provi 30.4 43 0.00094 34.5 2.9 22 19-40 518-539 (569)
36 smart00586 ZnF_DBF Zinc finger 29.6 23 0.0005 25.1 0.6 38 74-111 8-45 (49)
37 PF05278 PEARLI-4: Arabidopsis 29.1 2.8E+02 0.0061 26.2 7.8 21 191-211 175-195 (269)
38 KOG0049 Transcription factor, 29.0 1E+02 0.0023 32.9 5.3 50 18-84 356-405 (939)
39 smart00502 BBC B-Box C-termina 28.8 2.6E+02 0.0056 21.2 7.2 38 189-226 46-83 (127)
40 PF07227 DUF1423: Protein of u 28.6 2.6E+02 0.0057 28.2 7.9 52 180-234 368-424 (446)
41 PF12037 DUF3523: Domain of un 28.2 3E+02 0.0066 26.0 7.8 49 186-234 133-182 (276)
42 KOG0050 mRNA splicing protein 27.7 53 0.0011 33.9 2.9 23 52-82 28-50 (617)
43 PF09420 Nop16: Ribosome bioge 26.8 82 0.0018 26.8 3.6 16 70-85 148-163 (164)
44 PF04231 Endonuclease_1: Endon 23.9 2E+02 0.0042 26.1 5.6 51 182-232 157-207 (218)
45 cd07662 BAR_SNX6 The Bin/Amphi 21.3 4.8E+02 0.01 23.9 7.6 60 182-241 76-148 (218)
46 PF01388 ARID: ARID/BRIGHT DNA 20.5 1.4E+02 0.0031 22.3 3.5 30 51-90 57-86 (92)
47 KOG2264 Exostosin EXT1L [Signa 20.5 4.7E+02 0.01 27.9 8.0 58 178-240 78-135 (907)
48 PRK08476 F0F1 ATP synthase sub 20.5 4.9E+02 0.011 21.4 8.0 45 196-240 88-132 (141)
49 PF15419 LNP1: Leukemia NUP98 20.0 1.5E+02 0.0033 26.3 4.0 14 185-198 107-120 (177)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=100.00 E-value=7.8e-32 Score=250.57 Aligned_cols=216 Identities=33% Similarity=0.442 Sum_probs=150.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC----CC
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP 97 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~----~~ 97 (253)
.++|+.+||++||++|+++|..|+++++++++|++||.++... +++||+.||++||+||+++||++|.+. ..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~ 129 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG 129 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 7999999999999999999999999999999999999987763 588999999999999999999999986 48
Q ss_pred CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CC-----C---CCCC
Q 025430 98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GR-----S---VSTE 143 (253)
Q Consensus 98 s~W~fFd~LD~Llg-~~~~~---------~~~p~~~~~~~----~~~p~~~-----------~~-~~-----~---~~~~ 143 (253)
+.|+||+.||.++. ..++. ...|.++.... ..+|... .+ .+ . ....
T Consensus 130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (345)
T KOG4282|consen 130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV 209 (345)
T ss_pred ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence 89999999999997 22210 01111111000 0000000 00 00 0 0000
Q ss_pred CCC------CCCCCCCCCCCCCh-hhhhhhhcccccccCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025430 144 NDN------LSSDGEADDDGDDD-EIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE 215 (253)
Q Consensus 144 ~~~------~~sd~~~~~~~~~~-~~~~~k~~r~~~~~~~~g~~~~ela~aI~~f~e~yer~E-~~K~~~~~elEk~Rme 215 (253)
.+. .+++.++..+...+ .....++.+........+..++++++++.+|+++|+++| ..++++|.++|++||+
T Consensus 210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~ 289 (345)
T KOG4282|consen 210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME 289 (345)
T ss_pred CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence 000 01111111111110 111111111222222345689999999999999999999 9999999999999999
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHhhhc
Q 025430 216 FI---KDVECERMNMFMGAQLEIQKSKRK 241 (253)
Q Consensus 216 f~---kdlE~~r~~~~~~~Q~ei~~~~~~ 241 (253)
|+ +++|++++++++++|++|+.|+..
T Consensus 290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~ 318 (345)
T KOG4282|consen 290 EIERNKELELARQERIQETQLEIRSIKAI 318 (345)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999988765
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.82 E-value=2e-20 Score=141.63 Aligned_cols=83 Identities=35% Similarity=0.718 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHh--hhc-CCCChh-hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC--C
Q 025430 23 DCWSEGATGTLIEAWGDRYVR--LNR-GHLRQK-DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--P 96 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~q--l~r-g~lr~k-~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~--~ 96 (253)
..||++||.+||++|++.+.+ +.. +++++. .|++||+.|+++ |+.+|+.||++||++|+++|++++.+. .
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~----G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~ 77 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEH----GYNRTPEQCRNKWKNLKKKYKKIKDRNKKS 77 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHH----C----HHHHHHHHHHHHHHHHCSSSSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 579999999999999996544 443 577776 899999999976 267999999999999999999999986 4
Q ss_pred CCCCcchHHHHHh
Q 025430 97 PSKWPFYYRLDSL 109 (253)
Q Consensus 97 ~s~W~fFd~LD~L 109 (253)
+++|+||+.||.|
T Consensus 78 ~~~w~~f~~md~i 90 (90)
T PF13837_consen 78 GSSWPYFDEMDEI 90 (90)
T ss_dssp --S---TT-----
T ss_pred CCcCcCHHHHhcC
Confidence 6799999999987
No 3
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.61 E-value=1.7e-07 Score=71.60 Aligned_cols=68 Identities=29% Similarity=0.474 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHhhHHHhhh---cCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025430 24 CWSEGATGTLIEAWGDRYVRLN---RGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (253)
Q Consensus 24 ~WSe~ET~~LIdawger~~ql~---rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~ 94 (253)
.||+..+..||+++-+.-..-+ .+.++...|..|+.+++++.+ ...|..||+||++.||+.|+..+.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~---~~~t~~qlknk~~~lk~~y~~~~~l 71 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTG---LNYTKKQLKNKWKTLKKDYRIWKEL 71 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhC---CcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999988755543 356778899999999999754 5689999999999999999998764
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.54 E-value=9e-08 Score=72.50 Aligned_cols=69 Identities=30% Similarity=0.534 Sum_probs=52.8
Q ss_pred HHHHHhhHHHh-------hhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC------C--C
Q 025430 33 LIEAWGDRYVR-------LNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP------P--P 97 (253)
Q Consensus 33 LIdawger~~q-------l~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~------~--~ 97 (253)
||+++...-.- ......+...|.+||..|+. |..+|+.||++|+..|+.+..+. + +
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~ 72 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 67777764222 22334456689999999953 89999999999999999987542 1 5
Q ss_pred CCCcchHHHHHhh
Q 025430 98 SKWPFYYRLDSLI 110 (253)
Q Consensus 98 s~W~fFd~LD~Ll 110 (253)
+.|+||+.|..|-
T Consensus 73 ~~w~~~~~m~FL~ 85 (89)
T smart00595 73 SKWEYFDRLSFLR 85 (89)
T ss_pred CCchhhHhhhhHH
Confidence 8999999998875
No 5
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.24 E-value=4.7e-07 Score=66.76 Aligned_cols=70 Identities=27% Similarity=0.480 Sum_probs=51.6
Q ss_pred HHHHHhhHHHhh-------hcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC--------CC
Q 025430 33 LIEAWGDRYVRL-------NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--------PP 97 (253)
Q Consensus 33 LIdawger~~ql-------~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~--------~~ 97 (253)
||++|...-.-. ....++...|++||..++.. .+..+|+.+|.+|+..|+.++.+. ..
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~~-------~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~ 73 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGKE-------FSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYV 73 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 566666543322 23335567899999999643 468899999999999999988653 37
Q ss_pred CCCcchHHHHHh
Q 025430 98 SKWPFYYRLDSL 109 (253)
Q Consensus 98 s~W~fFd~LD~L 109 (253)
+.|.||+.|.-|
T Consensus 74 ~~~~~~~~l~FL 85 (85)
T PF10545_consen 74 PTWSYYEELSFL 85 (85)
T ss_pred CccHHHHHCcCC
Confidence 899999999754
No 6
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.22 E-value=5.8e-06 Score=61.54 Aligned_cols=70 Identities=29% Similarity=0.298 Sum_probs=55.2
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhc-CC------CChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 025430 21 REDCWSEGATGTLIEAWGDRYVRLNR-GH------LRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (253)
Q Consensus 21 r~~~WSe~ET~~LIdawger~~ql~r-g~------lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~ 93 (253)
|...||.+|..+||+....+...+.. .+ .+...|++|+..||+..+ ..+|+.||+.+|++||..=|+.-.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~---~~Rs~~~lkkkW~nlk~~~Kk~~~ 77 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP---GKRSWKQLKKKWKNLKSKAKKKLA 77 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45789999999999998886555432 11 234679999999999643 279999999999999998887643
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.84 E-value=3.6e-05 Score=52.71 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
..||.+|...|+++....-. ..|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS-------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC-------CCCCHHHHHHHHHhhC
Confidence 37999999999998764321 17999999995 1489999999998874
No 8
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.29 E-value=0.00048 Score=44.95 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.2
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
..||.+|...|+.+....-. .+|..||..|. .||..||++++.+|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC--------CCCHHHHHHHHHHHcC
Confidence 47999999999988764321 47999999994 4899999999988764
No 9
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.25 E-value=0.0005 Score=48.60 Aligned_cols=43 Identities=35% Similarity=0.730 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HH
Q 025430 25 WSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LK 85 (253)
Q Consensus 25 WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LK 85 (253)
||.+|...|+..+... |+ .|..||..|. .||..||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~--------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG--------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST--------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC--------cCCHHHHHHHHHHHCc
Confidence 9999999999998874 22 6999999984 3899999999998 64
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.13 E-value=0.00099 Score=42.91 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 24 ~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
.||.+|...|+.+....-. ..|..||..|. .||..||++++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELP--------GRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcC--------CCCHHHHHHHHHHhC
Confidence 4999999999988774421 46999999984 289999999998763
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.39 E-value=0.039 Score=50.87 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~ 90 (253)
......||.+|-..||+.+.. -| ..|..||..| +.||+.||||+|.++.++...
T Consensus 75 ~I~kgpWT~EED~lLlel~~~------~G----nKWs~IAk~L--------pGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 75 SVKRGGITSDEEDLILRLHRL------LG----NRWSLIAGRI--------PGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred hcccCCCChHHHHHHHHHHHh------cc----ccHHHHHhhc--------CCCCHHHHHHHHHHHHhHHHH
Confidence 445668999999999987533 12 2599999988 348999999999987666433
No 12
>PLN03091 hypothetical protein; Provisional
Probab=95.24 E-value=0.05 Score=53.82 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~ 90 (253)
......||.+|-..||+.+.. -| ..|..||..| +.||+.||||+|..+-++|.+
T Consensus 64 ~IkKgpWT~EED~lLLeL~k~------~G----nKWskIAk~L--------PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 64 DLKRGTFSQQEENLIIELHAV------LG----NRWSQIAAQL--------PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cccCCCCCHHHHHHHHHHHHH------hC----cchHHHHHhc--------CCCCHHHHHHHHHHHHHHHHH
Confidence 345668999999999988753 13 3699999988 348999999999998777755
No 13
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.16 E-value=0.11 Score=41.24 Aligned_cols=67 Identities=22% Similarity=0.250 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~ 94 (253)
-.||++.-.+||+..-+....-+.. -..+|..+++.|..... +..|..|-..||..||++|.....+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~--p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKS--PQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCC--CCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 3699999999999888764444443 33488888888887653 5578999999999999999997766
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=93.90 E-value=0.12 Score=47.67 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=36.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
+-+...||.+|-..|+.+-... | ...|..||..|. ..||+.|||.||.+.
T Consensus 22 glKRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g-------~gRT~KQCReRW~N~ 71 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG-------LLRCGKSCRLRWMNY 71 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh-------cCCCcchHHHHHHHh
Confidence 4566689999999988753321 2 235999998873 348999999999753
No 15
>PLN03091 hypothetical protein; Provisional
Probab=89.95 E-value=0.41 Score=47.56 Aligned_cols=49 Identities=18% Similarity=0.339 Sum_probs=36.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
..+...||.+|-..|+.+.... | ...|..||..+. ..||+.|||.||.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky------G---~~nWs~IAk~~g-------~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY------G---HGCWSSVPKQAG-------LQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------C---cCCHHHHhhhhc-------cCcCcchHhHHHHh
Confidence 3455689999999998776422 2 136999997762 34899999999874
No 16
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=89.43 E-value=7.2 Score=38.82 Aligned_cols=42 Identities=26% Similarity=0.586 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHH
Q 025430 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (253)
Q Consensus 21 r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrn 79 (253)
-.+.||..|-.+||++-. .++-|| |++||+.|- .||..+|+.
T Consensus 71 ~~~~WtadEEilLLea~~----t~G~GN-----W~dIA~hIG--------tKtkeeck~ 112 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAE----TYGFGN-----WQDIADHIG--------TKTKEECKE 112 (438)
T ss_pred CCCCCChHHHHHHHHHHH----HhCCCc-----HHHHHHHHc--------ccchHHHHH
Confidence 356899999999999853 355564 999999994 379999963
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=88.27 E-value=0.62 Score=47.03 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=37.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
+..-+..||+.||++||++-.-. ..+|..||..|. .||..||--|+=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y----------~ddW~kVa~hVg--------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMY----------GDDWNKVADHVG--------TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHh----------cccHHHHHhccC--------CCCHHHHHHHHHhc
Confidence 45567799999999999874321 347999999995 38999999887655
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=87.42 E-value=0.87 Score=45.68 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 21 r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
+...||.+|+++||+.-... ..+|..||..|.. ||..||--+|=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVgt--------Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVGT--------KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhCC--------CCHHHHHHHHHcC
Confidence 56699999999998753221 2479999999952 8999998887665
No 19
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=83.21 E-value=3 Score=36.61 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=44.1
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhh-hcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHH-HHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI-DTLKKKYKI 90 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql-~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKi-d~LKKrYK~ 90 (253)
.+.++||.++-.+|-+++ +.. ..|+.+-..+++|+..++ +|..+|.-+| -.++++|..
T Consensus 3 ~rqdawt~e~d~llae~v----l~~i~eg~tql~afe~~g~~L~---------rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVV----LRHIREGGTQLKAFEEVGDALK---------RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHH
Confidence 467899999999985544 433 456666677888988886 6899999999 456777776
No 20
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.73 E-value=3.3 Score=36.16 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHh
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIE 91 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LKKrYK~e 91 (253)
.|-+.||+++-++|-++-= ++ +..|+..-.-++||++.+| ||..=|.-||.. ++|+|..+
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rh--IReG~TQL~AFeEvg~~L~---------RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RH--IREGSTQLSAFEEVGRALN---------RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHH-HH--HhcchHHHHHHHHHHHHHc---------ccHHHhcchHHHHHHHHHHHH
Confidence 4678999999998877632 22 3456554467999999995 799999999985 67789885
No 21
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=81.95 E-value=2.4 Score=43.74 Aligned_cols=67 Identities=18% Similarity=0.391 Sum_probs=49.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHH---hhh--------c----CCCChh-hHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYV---RLN--------R----GHLRQK-DWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~---ql~--------r----g~lr~k-~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
.....||-+|...||++..+.+. |.. + +.|..- .|-.|++.+- .|+..|||.|+-.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~--------TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG--------TRSRIQCRYKWYK 505 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc--------CCCcchHHHHHHH
Confidence 45668999999999999987544 331 1 123333 3999999442 2789999999999
Q ss_pred HHHHHHHhhCC
Q 025430 84 LKKKYKIEKAK 94 (253)
Q Consensus 84 LKKrYK~eK~~ 94 (253)
|-..|=.-+.+
T Consensus 506 l~~~~s~n~~~ 516 (607)
T KOG0051|consen 506 LTTSPSFNKRQ 516 (607)
T ss_pred HHhhHHhhccc
Confidence 99988766655
No 22
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=79.25 E-value=4.8 Score=37.50 Aligned_cols=78 Identities=15% Similarity=0.219 Sum_probs=49.5
Q ss_pred CCCHHHHHHHHHHHhh---HHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH-----h-hCC
Q 025430 24 CWSEGATGTLIEAWGD---RYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI-----E-KAK 94 (253)
Q Consensus 24 ~WSe~ET~~LIdawge---r~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~-----e-K~~ 94 (253)
.|...-..++|..-++ -|- ..+.....+|+.||-.|-.|-| ...+..+++.=|.+-|...|. + +.+
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~--~~~~~~~~~~~~v~v~vy~Rtg---~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~ 93 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWK--KKSRVPNEEWEEVAVEVYKRTG---KLVSVKHIRSIFKNAKDSLRRRLRKCIKKKK 93 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhh--ccCCccHHHHHHHHHHHHHHHh---hhcCHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3444444445554444 344 4445556789999999999864 457788888888777766665 2 222
Q ss_pred CC-------CCCCcchHHH
Q 025430 95 PP-------PSKWPFYYRL 106 (253)
Q Consensus 95 ~~-------~s~W~fFd~L 106 (253)
.+ -..|+||..|
T Consensus 94 l~~~~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 94 LSPEETEEKLWKWELYPFI 112 (313)
T ss_pred CCHHHHHHHHHcCCccchh
Confidence 22 3579988755
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=71.78 E-value=6.5 Score=41.37 Aligned_cols=56 Identities=14% Similarity=0.275 Sum_probs=42.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (253)
+..+.+.||.+|...|+.+=.. . +...|+-||..+- ..|++-||-.||.+=-+..+
T Consensus 249 P~~nk~~WS~EE~E~L~AiA~A------~---~~~~W~~IA~~Lg-------t~RS~yQC~~kF~t~~~~L~ 304 (939)
T KOG0049|consen 249 PKWNKEHWSNEEVEKLKALAEA------P---KFVSWPMIALNLG-------TNRSSYQCMEKFKTEVSQLS 304 (939)
T ss_pred CccchhccChHHHHHHHHHHhc------c---ccccHHHHHHHhC-------CCcchHHHHHHHHHHHHHHH
Confidence 5778899999999999876332 1 2346999999983 56899999999987554433
No 24
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=70.98 E-value=18 Score=36.56 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 025430 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRK 241 (253)
Q Consensus 179 ~~~~ela~aI~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~~ 241 (253)
+++.||-..|+-+-- =||..|-+|-+|||+.|-+ ||-..+ |-.+.||||.+||.+
T Consensus 569 ~s~delr~qi~el~~---ive~lk~~~~kel~kl~~d----leeek~-mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLC---IVEALKKDHGKELEKLRKD----LEEEKT-MRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHH-HHhhhHhhHHHHHHH
Confidence 366677666654443 4789999999999999988 665543 556899999999875
No 25
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=68.02 E-value=18 Score=32.60 Aligned_cols=56 Identities=27% Similarity=0.366 Sum_probs=43.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHhh
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIEK 92 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LKKrYK~eK 92 (253)
.-....||++|..+||.+.... || -|..||..| +.||+--.||=|.+ |||+++...
T Consensus 59 ~ikrg~fT~eEe~~Ii~lH~~~------GN----rWs~IA~~L--------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 59 DLKRGNFSDEEEDLIIKLHALL------GN----RWSLIAGRL--------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CccCCCCCHHHHHHHHHHHHHH------Cc----HHHHHHhhC--------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 4456689999999999876532 32 299999998 56999888887765 588887765
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=67.83 E-value=17 Score=26.12 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhH---HHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW---KEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 21 r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W---~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
+...||+++-..+|+++.. +++| +| ..|++.|.. ...|..||+.-...
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~------~~lT~~qV~SH~QK 52 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV------DGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC------CCCCHHHHHHHHHH
Confidence 4568999999999998753 4444 58 889888753 22499999876543
No 27
>PF15444 TMEM247: Transmembrane protein 247
Probab=62.06 E-value=11 Score=33.81 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhh
Q 025430 204 KQMMELEKERLEFI 217 (253)
Q Consensus 204 ~~~~elEk~Rmef~ 217 (253)
...+||||.||||.
T Consensus 101 ~~emELEKvRMEFE 114 (218)
T PF15444_consen 101 NTEMELEKVRMEFE 114 (218)
T ss_pred chhhHHHHHHHHHH
Confidence 34579999999986
No 28
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=40.81 E-value=45 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.2
Q ss_pred hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 53 DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 53 ~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
-|.+||+.|. -|...|..||..|+
T Consensus 19 s~~~la~~lg---------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG---------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT---------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------cCHHHHHHHHHHhC
Confidence 4889999994 58899999999885
No 29
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=35.94 E-value=38 Score=30.02 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.7
Q ss_pred HHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 55 KEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 55 ~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
..+|+.++..+ +.-+-.||++||+.=-
T Consensus 134 ~~MA~eL~~~h----Pew~~~TC~~RI~~wL 160 (176)
T PF06576_consen 134 RKMAEELNEKH----PEWCLRTCRRRIDWWL 160 (176)
T ss_pred HHHHHHHhccC----CcccHHHHHHHHHHHH
Confidence 35899998754 7789999999998643
No 30
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=34.99 E-value=86 Score=33.03 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=12.1
Q ss_pred HHHHHHHhhHHHHHHHHHHHHH
Q 025430 209 LEKERLEFIKDVECERMNMFMG 230 (253)
Q Consensus 209 lEk~Rmef~kdlE~~r~~~~~~ 230 (253)
||+.|||.. -||++||.+...
T Consensus 665 LERErmErE-RLEreRM~ve~e 685 (940)
T KOG4661|consen 665 LERERMERE-RLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHH-HHHHHHHHHHHh
Confidence 555555533 377777776554
No 31
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=33.50 E-value=42 Score=30.20 Aligned_cols=44 Identities=11% Similarity=0.277 Sum_probs=31.7
Q ss_pred CCCCHHHHHHHHHHHhhHHHhh-hcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 23 DCWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql-~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
-.||.+|-..|++. ++. +-| -|.-||..+- ..|++++||-||-|
T Consensus 10 GpWt~EED~~L~~~-----V~~~G~~-----~W~~i~k~~g-------l~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRS-----IKSFGKH-----NGTALPKLAG-------LRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHH-----HHHhCCC-----CcchhhhhcC-------CCccchHHHHHhhc
Confidence 47999999998863 322 112 5888888773 24889999999865
No 32
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=32.75 E-value=2.1e+02 Score=21.26 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 025430 187 AILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKS 238 (253)
Q Consensus 187 aI~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~ 238 (253)
-|..|+.+|..||.-+.+...+|.. .. -.-+..+|-.++|.+..++
T Consensus 5 el~~fA~A~~~ie~ir~~~~~~l~~-----~~-~~~~~~~l~~~a~~~~~~~ 50 (78)
T PF13767_consen 5 ELDQFARAVLEIEPIRQEYQQELQA-----AE-DPEEIQELQEEAQEEMVEA 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-----cc-CHHHHHHHHHHHHHHHHHH
Confidence 5788999999999988887777765 11 1234445555555555443
No 33
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=32.59 E-value=3.5e+02 Score=24.58 Aligned_cols=69 Identities=23% Similarity=0.341 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHH-----------HHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025430 180 ACRELARAILKFGEIYERIESAKQKQM--------MELEK-----------ERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (253)
Q Consensus 180 ~~~ela~aI~~f~e~yer~E~~K~~~~--------~elEk-----------~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~ 240 (253)
+.++|..++..+.++|-.+|..-.+.. ..||+ ..-++.+|--.+|- -|.+.+.++.|+.+
T Consensus 62 ~sk~lG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pLe~k~e~d~k~i~~~~K~y~~E~K~~~~-~l~K~~sel~Kl~K 140 (223)
T cd07605 62 GSQELGEALKQIVDTHKSIEASLEQVAKAFHGELILPLEKKLELDQKVINKFEKDYKKEYKQKRE-DLDKARSELKKLQK 140 (223)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 567899999999999999998877663 22222 22334444444443 46789999999887
Q ss_pred ccCCCCCCC
Q 025430 241 KQRPASSGK 249 (253)
Q Consensus 241 ~~~~~~~~~ 249 (253)
..+..+++|
T Consensus 141 Ks~~~~~~k 149 (223)
T cd07605 141 KSQKSGTGK 149 (223)
T ss_pred HHcccCCCc
Confidence 755444444
No 34
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=30.44 E-value=2.3e+02 Score=22.88 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHH
Q 025430 187 AILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMN 226 (253)
Q Consensus 187 aI~~f~e~yer~E~~------K~~~~~elEk~Rmef~kdlE~~r~~ 226 (253)
+|+.-|.+|-+.|.+ +.++...|+++|.....|.+.++.+
T Consensus 46 sir~ag~~f~krE~A~E~~Y~r~~EkEqL~~Lk~kl~~e~~~~~k~ 91 (100)
T PF04568_consen 46 SIRAAGGAFGKREAAQEEQYFRKKEKEQLKKLKEKLKEEIEHHRKE 91 (100)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCCccchHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445444444 4556667777777766666666665
No 35
>PRK13271 treA trehalase; Provisional
Probab=30.36 E-value=43 Score=34.51 Aligned_cols=22 Identities=14% Similarity=0.211 Sum_probs=18.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhH
Q 025430 19 GGREDCWSEGATGTLIEAWGDR 40 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger 40 (253)
-..++.||.+-++.||+.|+.+
T Consensus 518 ~q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 518 LQDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred CCCCcCcHHHHHHHHHHhcCcc
Confidence 3558999999999999988775
No 36
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=29.59 E-value=23 Score=25.11 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCCcchHHHHHhhC
Q 025430 74 DIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG 111 (253)
Q Consensus 74 ~~QCrnKid~LKKrYK~eK~~~~~s~W~fFd~LD~Llg 111 (253)
-.-|+.|+++|..--...+-+.-...=..|..||.||.
T Consensus 8 CE~Cr~kfd~l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~ 45 (49)
T smart00586 8 CENCREKYDDLETHLLSEKHRRFAENNDNFQALDDLIS 45 (49)
T ss_pred cccHhHHHhhHHHHhccHHHHHHHcCchhHHHHHHHHH
Confidence 35699999999987776665532223356788898875
No 37
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.13 E-value=2.8e+02 Score=26.17 Aligned_cols=21 Identities=38% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 025430 191 FGEIYERIESAKQKQMMELEK 211 (253)
Q Consensus 191 f~e~yer~E~~K~~~~~elEk 211 (253)
|.|+.+-+|..+.-.+.++|+
T Consensus 175 L~Ei~Ea~e~~~~~~~~e~ek 195 (269)
T PF05278_consen 175 LEEILEAKEIYDQHETREEEK 195 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444443
No 38
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=29.04 E-value=1e+02 Score=32.85 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=37.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
++..-..|+++|-..|+.|-.+. ..++|..|-..| +.|++.|||.|.-+.
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v--------PnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV--------PNRSDSQCRERYTNV 405 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhc--------CCccHHHHHHHHHHH
Confidence 34555589999999999875432 146898888888 678999999986553
No 39
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=28.82 E-value=2.6e+02 Score=21.17 Aligned_cols=38 Identities=18% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 025430 189 LKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMN 226 (253)
Q Consensus 189 ~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~ 226 (253)
..|.....-++..+...+.+|++.+.+-...|+-+.-+
T Consensus 46 ~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~ 83 (127)
T smart00502 46 AAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLES 83 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999998866666665544
No 40
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=28.63 E-value=2.6e+02 Score=28.25 Aligned_cols=52 Identities=27% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhHHHHHHHHHHHHHHHHH
Q 025430 180 ACRELARAILKFGEIYERIESAKQKQMME-----LEKERLEFIKDVECERMNMFMGAQLE 234 (253)
Q Consensus 180 ~~~ela~aI~~f~e~yer~E~~K~~~~~e-----lEk~Rmef~kdlE~~r~~~~~~~Q~e 234 (253)
=|-.-|+-.|+=||.|-||-.+|-+++.| +=|.|+. |.|-+|.+.|++.|+.
T Consensus 368 MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 368 MFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 45577888999999999999999988875 3455554 8888999999887764
No 41
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=28.15 E-value=3e+02 Score=26.03 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHH
Q 025430 186 RAILKFGEIYERIESAKQKQMMELEKERLEFI-KDVECERMNMFMGAQLE 234 (253)
Q Consensus 186 ~aI~~f~e~yer~E~~K~~~~~elEk~Rmef~-kdlE~~r~~~~~~~Q~e 234 (253)
+.++.--|.+.|.|+.+++.-.+|..+|+.-. .++||+|-.++.++..|
T Consensus 133 e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AE 182 (276)
T PF12037_consen 133 ELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAE 182 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45666678999999999999888887777644 77888888877777766
No 42
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=27.65 E-value=53 Score=33.91 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcccCCCCCCCChHHHHHHHH
Q 025430 52 KDWKEVAESVNSRENGVKPKKTDIQCKNRID 82 (253)
Q Consensus 52 k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid 82 (253)
+.|.+||..++. +|..||+++|.
T Consensus 28 nqws~i~sll~~--------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 28 NQWSRIASLLNR--------KTARQCKARWE 50 (617)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHH
No 43
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=26.82 E-value=82 Score=26.82 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHHHHH
Q 025430 70 PKKTDIQCKNRIDTLK 85 (253)
Q Consensus 70 ~~kT~~QCrnKid~LK 85 (253)
+.-|+.||+.||...+
T Consensus 148 ~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 148 MQHTPGQLRRKIRKYK 163 (164)
T ss_pred ccCCHHHHHHHHHHhc
Confidence 5579999999987654
No 44
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=23.95 E-value=2e+02 Score=26.07 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 025430 182 RELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQ 232 (253)
Q Consensus 182 ~ela~aI~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q 232 (253)
..+|+|+-=|+..|+-+.-.+.+..+=++--+.+=.-+.|+.|.+.|...|
T Consensus 157 GdIARa~fYm~~rY~~~~~~~~~~~~l~~W~~~DPVd~~E~~RN~~I~~~Q 207 (218)
T PF04231_consen 157 GDIARAYFYMATRYEGLPLSDQQRQLLLAWHKEDPVDEWERERNNRIYKIQ 207 (218)
T ss_dssp HHHHHHHHHHHHHC-T----HHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 489999999999998888888777777788888888899999999988766
No 45
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=21.33 E-value=4.8e+02 Score=23.87 Aligned_cols=60 Identities=15% Similarity=0.294 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHhhhc
Q 025430 182 RELARAILKFGEIYERIESAKQKQMM----------ELEKERLEFIKDVECERMNMFM---GAQLEIQKSKRK 241 (253)
Q Consensus 182 ~ela~aI~~f~e~yer~E~~K~~~~~----------elEk~Rmef~kdlE~~r~~~~~---~~Q~ei~~~~~~ 241 (253)
..|+.++.+++|+|++|.+---.|.- ..=-+=+..+|||=.+|+..|. ++|.-|.|.+..
T Consensus 76 t~L~~~l~~laev~eki~~l~~~~A~~e~l~L~e~L~~Y~r~~~A~Kdll~rR~r~l~~~enA~k~L~KaR~~ 148 (218)
T cd07662 76 TDICKFFLKVSELFDKTRKIEARVAADEDLKLSDLLKYYLRESQAAKDLLYRRSRSLVDYENANKALDKARAK 148 (218)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36899999999999998876555531 1112224566999999998875 566777776654
No 46
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=20.55 E-value=1.4e+02 Score=22.26 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025430 51 QKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (253)
Q Consensus 51 ~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~ 90 (253)
++.|.+||+.+.-- ...+.. ...|++.|.+
T Consensus 57 ~~~W~~va~~lg~~-----~~~~~~-----~~~L~~~Y~~ 86 (92)
T PF01388_consen 57 NKKWREVARKLGFP-----PSSTSA-----AQQLRQHYEK 86 (92)
T ss_dssp HTTHHHHHHHTTS------TTSCHH-----HHHHHHHHHH
T ss_pred cchHHHHHHHhCCC-----CCCCcH-----HHHHHHHHHH
Confidence 45799999999421 112222 6677777765
No 47
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.50 E-value=4.7e+02 Score=27.85 Aligned_cols=58 Identities=22% Similarity=0.248 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025430 178 GAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (253)
Q Consensus 178 g~~~~ela~aI~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~ 240 (253)
+..++|+.+...-..+-.-..|..+|+---|+|+.+.. .|--. +.|.+.|+||.++|.
T Consensus 78 ~r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k----iEelk-~~i~~~q~eL~~Lk~ 135 (907)
T KOG2264|consen 78 GRILREQKRILASVSLELTELEVKRQELNSEIEEINTK----IEELK-RLIPQKQLELSALKG 135 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHH-HHHHHhHHHHHHHHh
Confidence 34566666666666666667788888888888887765 22211 235566666666654
No 48
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=20.45 E-value=4.9e+02 Score=21.45 Aligned_cols=45 Identities=18% Similarity=0.189 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh
Q 025430 196 ERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (253)
Q Consensus 196 er~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~ 240 (253)
...+..+.+.-.++++++-++..+|+.++-++..+.+.++.-+..
T Consensus 88 ~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~ 132 (141)
T PRK08476 88 EEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 344445555556666666667777888888888888877776654
No 49
>PF15419 LNP1: Leukemia NUP98 fusion partner 1
Probab=20.04 E-value=1.5e+02 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.570 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHH
Q 025430 185 ARAILKFGEIYERI 198 (253)
Q Consensus 185 a~aI~~f~e~yer~ 198 (253)
.-+|+.|.|.||+-
T Consensus 107 shSIqeFSESFEqQ 120 (177)
T PF15419_consen 107 SHSIQEFSESFEQQ 120 (177)
T ss_pred cccHHHHHHHHHHH
Confidence 34699999999973
Done!