Query 025430
Match_columns 253
No_of_seqs 168 out of 245
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:08:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025430.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025430hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 3.6E-21 1.2E-25 146.3 7.8 82 20-105 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 98.0 1.7E-05 5.8E-10 57.2 6.4 53 19-86 8-60 (64)
3 2cu7_A KIAA1915 protein; nucle 97.9 5.1E-05 1.7E-09 55.3 8.0 56 15-88 2-57 (72)
4 2d9a_A B-MYB, MYB-related prot 97.8 4.5E-05 1.6E-09 53.5 6.1 51 17-84 3-53 (60)
5 1x41_A Transcriptional adaptor 97.8 6.5E-05 2.2E-09 53.0 6.6 50 18-84 4-53 (60)
6 2elk_A SPCC24B10.08C protein; 97.7 0.00018 6E-09 50.6 7.5 47 22-84 9-55 (58)
7 1w0t_A Telomeric repeat bindin 97.6 0.0001 3.5E-09 50.6 5.9 49 23-86 3-51 (53)
8 2yus_A SWI/SNF-related matrix- 97.6 8.4E-05 2.9E-09 55.7 5.7 49 18-84 14-62 (79)
9 2dim_A Cell division cycle 5-l 97.6 0.00014 4.7E-09 52.6 6.5 52 15-83 2-53 (70)
10 2yum_A ZZZ3 protein, zinc fing 97.6 0.00019 6.5E-09 52.4 7.0 54 18-83 4-57 (75)
11 1guu_A C-MYB, MYB proto-oncoge 97.5 0.00013 4.5E-09 49.6 5.2 46 22-84 3-48 (52)
12 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00046 1.6E-08 53.5 7.4 51 20-88 51-101 (107)
13 1ity_A TRF1; helix-turn-helix, 97.4 0.00039 1.3E-08 50.1 6.5 53 19-86 7-59 (69)
14 2din_A Cell division cycle 5-l 97.4 0.00057 1.9E-08 48.8 7.0 53 18-89 5-57 (66)
15 1gvd_A MYB proto-oncogene prot 97.3 0.00026 8.8E-09 48.2 4.8 46 22-84 3-48 (52)
16 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.00035 1.2E-08 51.8 5.6 54 19-86 15-68 (73)
17 3osg_A MYB21; transcription-DN 97.3 0.00027 9.3E-09 56.4 5.3 51 20-88 60-110 (126)
18 2ltp_A Nuclear receptor corepr 96.3 4.3E-05 1.5E-09 58.3 0.0 57 15-89 9-65 (89)
19 2llk_A Cyclin-D-binding MYB-li 97.3 0.0003 1E-08 52.2 4.6 51 18-87 19-69 (73)
20 2juh_A Telomere binding protei 97.1 0.003 1E-07 51.1 9.6 77 17-108 12-88 (121)
21 1gv2_A C-MYB, MYB proto-oncoge 97.1 0.00041 1.4E-08 53.3 4.1 51 19-87 53-103 (105)
22 2cjj_A Radialis; plant develop 97.1 0.0018 6.1E-08 50.1 7.5 59 22-94 8-66 (93)
23 2roh_A RTBP1, telomere binding 97.0 0.0023 7.9E-08 51.9 8.2 58 18-88 27-84 (122)
24 2ckx_A NGTRF1, telomere bindin 96.9 0.0017 5.9E-08 49.2 5.9 52 24-88 2-53 (83)
25 2cqq_A RSGI RUH-037, DNAJ homo 96.8 0.0054 1.8E-07 45.2 7.8 55 19-88 5-59 (72)
26 1h8a_C AMV V-MYB, MYB transfor 96.7 0.00071 2.4E-08 53.9 2.4 51 19-87 76-126 (128)
27 2aje_A Telomere repeat-binding 96.6 0.0025 8.5E-08 50.4 5.3 58 17-87 8-65 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.5 0.0059 2E-07 45.4 6.3 54 18-85 4-57 (73)
29 1h89_C C-MYB, MYB proto-oncoge 96.3 0.0016 5.3E-08 53.6 2.4 50 19-86 107-156 (159)
30 3osg_A MYB21; transcription-DN 96.3 0.0055 1.9E-07 48.7 5.5 47 20-84 9-55 (126)
31 1h8a_C AMV V-MYB, MYB transfor 96.2 0.0063 2.2E-07 48.3 5.6 48 19-83 24-71 (128)
32 3zqc_A MYB3; transcription-DNA 96.2 0.0024 8.3E-08 51.1 2.8 49 20-86 52-100 (131)
33 2k9n_A MYB24; R2R3 domain, DNA 96.1 0.0088 3E-07 46.2 5.4 43 24-83 3-45 (107)
34 1gv2_A C-MYB, MYB proto-oncoge 96.0 0.0077 2.6E-07 46.1 4.8 45 22-83 4-48 (105)
35 1x58_A Hypothetical protein 49 95.8 0.023 7.9E-07 41.1 6.1 56 17-87 3-58 (62)
36 2eqr_A N-COR1, N-COR, nuclear 95.7 0.018 6E-07 40.6 5.1 48 18-83 8-55 (61)
37 2iw5_B Protein corest, REST co 95.5 0.019 6.6E-07 51.1 6.0 52 19-88 130-181 (235)
38 1h89_C C-MYB, MYB proto-oncoge 95.5 0.017 5.8E-07 47.3 5.1 48 20-84 56-103 (159)
39 1ign_A Protein (RAP1); RAP1,ye 95.1 0.018 6.1E-07 51.7 4.3 52 20-85 6-59 (246)
40 3zqc_A MYB3; transcription-DNA 94.4 0.014 4.7E-07 46.7 1.8 44 24-84 4-47 (131)
41 1ug2_A 2610100B20RIK gene prod 92.4 0.5 1.7E-05 36.7 7.4 63 17-94 28-90 (95)
42 2xag_B REST corepressor 1; ami 91.2 0.32 1.1E-05 47.4 6.4 44 20-81 378-421 (482)
43 2yqk_A Arginine-glutamic acid 90.1 0.62 2.1E-05 32.9 5.5 47 15-79 2-49 (63)
44 1fex_A TRF2-interacting telome 87.5 0.88 3E-05 31.9 4.7 52 22-83 2-55 (59)
45 3hm5_A DNA methyltransferase 1 84.4 2.3 8E-05 32.7 6.1 60 23-95 31-90 (93)
46 2lr8_A CAsp8-associated protei 80.9 0.37 1.3E-05 35.5 0.0 58 19-92 11-68 (70)
47 2crg_A Metastasis associated p 72.2 5 0.00017 28.8 4.4 44 18-79 4-48 (70)
48 1gmj_A ATPase inhibitor; coile 70.6 16 0.00053 27.7 6.9 52 186-238 13-70 (84)
49 4a69_C Nuclear receptor corepr 69.4 3.9 0.00013 31.0 3.5 41 21-79 42-82 (94)
50 4eef_G F-HB80.4, designed hema 59.5 1.6 5.6E-05 32.4 -0.4 47 20-80 18-64 (74)
51 4iej_A DNA methyltransferase 1 48.9 43 0.0015 25.6 6.1 58 23-93 31-88 (93)
52 3oja_B Anopheles plasmodium-re 34.3 2E+02 0.0068 26.9 9.6 30 199-228 532-561 (597)
53 3vem_A Helicase protein MOM1; 27.3 99 0.0034 24.6 5.1 13 199-211 56-68 (115)
54 2hzd_A Transcriptional enhance 25.7 1.3E+02 0.0046 22.4 5.3 66 20-91 4-78 (82)
55 2jee_A YIIU; FTSZ, septum, coi 24.8 2.2E+02 0.0074 21.2 7.6 40 193-233 6-45 (81)
56 2v4h_A NF-kappa-B essential mo 22.3 2.9E+02 0.0098 21.7 7.3 33 202-237 43-75 (110)
57 1ign_A Protein (RAP1); RAP1,ye 22.1 1.7E+02 0.006 25.9 6.3 37 47-91 167-203 (246)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.84 E-value=3.6e-21 Score=146.26 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC---C
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P 96 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~---~ 96 (253)
.|...||++||.+||++|++...++..+..+...|++||+.|.+++ +.+|+.||++||++|++.||++|+++ +
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG 77 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG 77 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3678999999999999999999999888877789999999999864 68999999999999999999999985 3
Q ss_pred CCCCcchHH
Q 025430 97 PSKWPFYYR 105 (253)
Q Consensus 97 ~s~W~fFd~ 105 (253)
+.+||||++
T Consensus 78 ~~~~~yf~e 86 (86)
T 2ebi_A 78 SAKMSYYKE 86 (86)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCc
Confidence 569999973
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.96 E-value=1.7e-05 Score=57.21 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
......||.+|...|+++.... | ...|..||..+-- ..||+.||++|+.+|.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~------G---~~~W~~Ia~~~~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKY------G---EGNWAAISKNYPF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHH------C---TTCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcc------C---CCchHHHHhhcCC------CCCCHHHHHHHHHHHhc
Confidence 3455689999999999887543 2 1259999987621 24899999999999976
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.89 E-value=5.1e-05 Score=55.35 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=44.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
+.++......||.+|-..||+++... |+ .|..||..| ..||+.||++++.++-++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~--------~~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKF------GR----RWTKISKLI--------GSRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHH--------SSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHc--------CCCCHHHHHHHHHHHHHHH
Confidence 34456677799999999999987642 32 699999988 3489999999999876553
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.79 E-value=4.5e-05 Score=53.50 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=40.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 17 ~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
++......||.+|...|+++.... | ...|..||..|. .||+.||++++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQF------G---QQDWKFLASHFP--------NRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHT------C---TTCHHHHHHHCS--------SSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh------C---CCCHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 445667799999999999987542 2 136999999983 38999999998764
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.76 E-value=6.5e-05 Score=53.00 Aligned_cols=50 Identities=26% Similarity=0.504 Sum_probs=38.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
+.-....||.+|-..||++.... | ...|..||..|. .||+.||++++.++
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDC------G---FGNWQDVANQMC--------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT------C---TTCHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------C---cCcHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 34556689999999999986432 1 136999999993 38999999998764
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.66 E-value=0.00018 Score=50.57 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
...||.+|-..||++.... | ...|..||..|. ..||+.||++++.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~-------~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G---LGNWADIADYVG-------NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHC-------SSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHC-------CCCCHHHHHHHHHHH
Confidence 4479999999999987542 2 136999999993 148999999998764
No 7
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.64 E-value=0.0001 Score=50.60 Aligned_cols=49 Identities=20% Similarity=0.354 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
..||.+|...|+++.... | ...|..||..|.- ..||+.||++|+.+|.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~------G---~~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY------G---EGNWSKILLHYKF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH------C---TTCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHcCC------CCCCHHHHHHHHHHHHc
Confidence 479999999999987643 2 1269999998831 14899999999999875
No 8
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.62 E-value=8.4e-05 Score=55.75 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
.......||.+|...||++... + | ..|..||..|. .||..||++++.+|
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~----~--G----~~W~~IA~~v~--------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEM----Y--K----DDWNKVSEHVG--------SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHH----S--S----SCHHHHHHHHS--------SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHH----h--C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 3455678999999999998543 1 2 36999999993 38999999987654
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=0.00014 Score=52.61 Aligned_cols=52 Identities=23% Similarity=0.472 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
+.++......||.+|-..|+++.... | ...|..||..|. .||+.||++++.+
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKY------G---KNQWSRIASLLH--------RKSAKQCKARWYE 53 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHT------C---SSCHHHHHHHST--------TCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHhc--------CCCHHHHHHHHHH
Confidence 34556677799999999999887542 2 136999999984 3899999998866
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.58 E-value=0.00019 Score=52.43 Aligned_cols=54 Identities=13% Similarity=0.361 Sum_probs=38.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
+......||.+|-..|+++... +..+......|..||..|. .||+.||++++.+
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~--------~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG--------NRTAKQVASQVQK 57 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS--------SSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 3455568999999999988643 2222111257999999993 3899999999943
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.53 E-value=0.00013 Score=49.62 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
...||.+|-..|+++.... |+ ..|..||..|. .||+.||++++.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP--------NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST--------TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987652 32 25999999873 38999999999875
No 12
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.39 E-value=0.00046 Score=53.52 Aligned_cols=51 Identities=20% Similarity=0.402 Sum_probs=41.7
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
.....||.+|-..||+++... |+ .|..||..| +.||+.||++++.+|.++-
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEY------GP----KWNKISKFL--------KNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHH--------SSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhhH
Confidence 345689999999999987653 32 599999988 3489999999999998763
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.39 E-value=0.00039 Score=50.10 Aligned_cols=53 Identities=19% Similarity=0.336 Sum_probs=41.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
......||.+|...|+++.... |. ..|..||..|.- ..||+.||++|+.++.+
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc------CCCCHHHHHHHHHHHcC
Confidence 4566789999999999887642 21 269999998831 15899999999998865
No 14
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00057 Score=48.76 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=40.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (253)
+......||.+|-..||++... -|+ .|..||. +- .||+.||++++.++-+.-.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~--------gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II--------GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH--------SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc--------CcCHHHHHHHHHHHhChHh
Confidence 3455568999999999998432 132 6999999 63 2899999999999866543
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.34 E-value=0.00026 Score=48.22 Aligned_cols=46 Identities=22% Similarity=0.477 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
...||.+|...|+++.... | ...|..||..|. .||+.||++++.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~------G---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY------G---PKRWSVIAKHLK--------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH------C---TTCHHHHHTTST--------TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cChHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3479999999999987542 2 236999999873 38999999998763
No 16
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.32 E-value=0.00035 Score=51.81 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
......||.+|..+|+.+... +..+ ....|..||..| +.||+.||++++.+|..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~v--------pGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCV--------PSKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGC--------SSSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 445568999999999988642 2212 235699999998 34899999999998853
No 17
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.31 E-value=0.00027 Score=56.44 Aligned_cols=51 Identities=27% Similarity=0.494 Sum_probs=41.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
.....||.+|...||+++... | ..|..||..| +.||+.||++++.+|.++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G----~~W~~Ia~~l--------~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------G----RQWAIIAKFF--------PGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------C----SCHHHHHTTS--------TTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHH------C----cCHHHHHHHc--------CCCCHHHHHHHHHHHHHhc
Confidence 344589999999999988654 3 2499999866 3489999999999998874
No 18
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.35 E-value=4.3e-05 Score=58.28 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=45.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025430 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (253)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (253)
+.++......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++.+++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~--------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG--------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 34456667799999999999988653 32 5999999983 3899999999998887753
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.25 E-value=0.0003 Score=52.21 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=41.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (253)
+......||.+|-..||+++... |+ .|..||..| - ||+.|||+++..|++.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g--------Rt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G--------RSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T--------SCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C--------CCHHHHHHHHHHHHHH
Confidence 45666799999999999987542 32 399999999 4 7999999999988653
No 20
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.12 E-value=0.003 Score=51.11 Aligned_cols=77 Identities=18% Similarity=0.195 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCCC
Q 025430 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPP 96 (253)
Q Consensus 17 ~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~~ 96 (253)
+.+.....||.+|..+|++..... +.| .|..|+....... ..||+.||++||.||.+.-....+ -
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~----G~G-----~W~~Ia~~~~~~f----~~RT~v~lKdRWrnllk~~~~~p~--~ 76 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTASIAPQ--Q 76 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH----GGG-----CHHHHHHHHCSCC----SSCCSHHHHHHHHHHHHHHHTCST--T
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHH----CCC-----CHHHHHHHhcccc----CCCCHHHHHHHHHHHHhhhccCCc--c
Confidence 346677799999999999887643 222 6999999875321 359999999999999987333222 1
Q ss_pred CCCCcchHHHHH
Q 025430 97 PSKWPFYYRLDS 108 (253)
Q Consensus 97 ~s~W~fFd~LD~ 108 (253)
...|+|=+.++.
T Consensus 77 krg~~~p~e~~~ 88 (121)
T 2juh_A 77 RRGEPVPQDLLD 88 (121)
T ss_dssp CCCSCCCHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 335777666544
No 21
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.09 E-value=0.00041 Score=53.29 Aligned_cols=51 Identities=24% Similarity=0.487 Sum_probs=39.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (253)
......||.+|-..|++++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC--------TTCCHHHHHHHHHHHTC-
T ss_pred cccccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc--------CCCCHHHHHHHHHHHHhc
Confidence 3455689999999999987643 32 599999766 348999999999988654
No 22
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.07 E-value=0.0018 Score=50.07 Aligned_cols=59 Identities=19% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~ 94 (253)
...||.+|-.+|+.+... +..+ ....|..||..| +.||+.||++++.+|...-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~v--------pGRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAV--------EGRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHS--------TTCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHc--------CCCCHHHHHHHHHHHHHHHHHhhcC
Confidence 347999999999887542 2222 124699999999 3489999999999998876555443
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=97.03 E-value=0.0023 Score=51.87 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
.+.....||.+|+.+|++..... +.| .|..|+....... ..||++||++||.||.+.-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~~----~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL----GTG-----RWRDVKFRAFENV----HHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH----SSS-----CHHHHHHHHHSSS----CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhhc
Confidence 45667799999999999987643 223 6999999764322 3599999999999998764
No 24
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.89 E-value=0.0017 Score=49.15 Aligned_cols=52 Identities=21% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 24 ~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
.||.+|..+|++..... +.| .|..|+..--... ..||+.|||+|+.||.+.-
T Consensus 2 ~WT~eEd~~L~~gv~k~----G~g-----~W~~I~~~~~~~~----~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL----GTG-----RWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHH----CSS-----CHHHHHHHHCTTC----TTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH----CCC-----CcHHHHHhhcccc----CCCCHHHHHHHHHHHHHhc
Confidence 69999999999877642 323 5999998632111 3599999999999998754
No 25
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.80 E-value=0.0054 Score=45.19 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=41.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
......||.+|..+|+.+.. .+..|. ..-|+.||..|. ||..||+++++.|+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~lg---------Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHELG---------RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHHT---------SCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHhC---------CCHHHHHHHHHHHHHhc
Confidence 34455899999999998864 233332 245999999982 79999999999997763
No 26
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.66 E-value=0.00071 Score=53.88 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=39.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (253)
......||.+|-..||+++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 76 ~~~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 76 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS--------TTCCHHHHHHHHHTTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhc
Confidence 3445689999999999987653 32 599999876 348999999999887543
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.64 E-value=0.0025 Score=50.38 Aligned_cols=58 Identities=17% Similarity=0.245 Sum_probs=43.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025430 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (253)
Q Consensus 17 ~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (253)
+.+.....||.+|+.+|++..... +.| .|..|+...-... ..||++||++||.||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~----G~g-----~W~~I~~~~~~~f----~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL----GTG-----RWRDVKLCAFEDA----DHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH----CSS-----SHHHHHSSSSSST----TCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh----CCC-----ChHHHHHHhcccc----CCCCHHHHHHHHHHHHhh
Confidence 346677799999999999877642 223 5999987542111 359999999999999875
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.51 E-value=0.0059 Score=45.37 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=39.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
+-.....||.+|..+|..|.. .+..+. ...|+.||+.|- .||..||+.+.+.|.
T Consensus 4 ~~~~~~~WT~eE~k~fe~ALa----~~~~~t--p~rWe~IA~~V~--------gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 4 GSSGDKEWNEKELQKLHCAFA----SLPKHK--PGFWSEVAAAVG--------SRSPEECQRKYMENP 57 (73)
T ss_dssp CCCSSSCCCHHHHHHHHHHHH----HSCSSS--SSHHHHHHHHTT--------TSCHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHH----HCCCCC--ccHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 345567899999999998854 222221 236999999992 389999998777663
No 29
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.31 E-value=0.0016 Score=53.62 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
......||.+|-..||+++... |+ .|..||..| +.||+.||+|++.+|.+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l--------~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHTTTC
T ss_pred cccccCCChHHHHHHHHHHHHH------CC----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 3456789999999999997643 32 599999866 34899999999998754
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.30 E-value=0.0055 Score=48.74 Aligned_cols=47 Identities=21% Similarity=0.469 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
.....||.+|...|+++.... |. .|..||..|. .||+.||+.|+.+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP--------NRNARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT--------TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC--------CCCHHHHHHHHhhh
Confidence 445589999999999988653 32 6999998873 48999999988763
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.25 E-value=0.0063 Score=48.29 Aligned_cols=48 Identities=21% Similarity=0.473 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
......||.+|...|+++.... | ...|..||..|. .||+.||++++.+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKY------G---PKRWSDIAKHLK--------GRIGKQCRERWHN 71 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHT------C---SCCHHHHHHHSS--------SCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------C---CCCHHHHHHHhc--------CCcHHHHHHHHHH
Confidence 3445689999999999887542 2 135999999883 3899999998875
No 32
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.17 E-value=0.0024 Score=51.08 Aligned_cols=49 Identities=22% Similarity=0.436 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (253)
.....||.+|-..||+++... | ..|..||..| +.||+.||++++.++.+
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~------G----~~W~~Ia~~l--------~gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKL------G----SKWSVIAKLI--------PGRTDNAIKNRWNSSIS 100 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHS------C----SCHHHHTTTS--------TTCCHHHHHHHHHHTTG
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHc--------CCCCHHHHHHHHHHHHH
Confidence 344579999999999987432 2 2499999866 34899999999977544
No 33
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.06 E-value=0.0088 Score=46.19 Aligned_cols=43 Identities=21% Similarity=0.375 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 24 ~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
.||.+|...|+++.... | ...|..||..|. .||+.||+.++.+
T Consensus 3 ~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRY------G---AKDWIRISQLMI--------TRNPRQCRERWNN 45 (107)
T ss_dssp SSCHHHHHHHHHHHHHH------C---SSCHHHHHHHTT--------TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------C---CCCHHHHhhhcC--------CCCHHHHHHHHHH
Confidence 69999999999887542 2 136999999883 3899999998765
No 34
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.01 E-value=0.0077 Score=46.06 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
...||.+|...|+.+.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc--------CCCHHHHHHHHHh
Confidence 3479999999999887542 21 36999998873 3899999998766
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.75 E-value=0.023 Score=41.05 Aligned_cols=56 Identities=11% Similarity=0.229 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025430 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (253)
Q Consensus 17 ~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (253)
++....-.||++|+.+||+-.... |+ .|..|+..-.- -..||.+.-++|+.+|.|.
T Consensus 3 ~~~~~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f-----~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 3 SGSSGRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPF-----QKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCCSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCC-----CTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCC-----ccCcccchHHHHHHHHHhc
Confidence 345567799999999999987654 32 69999976432 1359999999999999864
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.67 E-value=0.018 Score=40.64 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
.+.....||++|-..|++++... | +.|..||..| +.||..||....-.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l--------~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQH------P----KNFGLIASYL--------ERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHS------T----TCHHHHHHHC--------TTSCHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHh------C----CCHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 45667899999999999988753 2 4799999776 34899999865433
No 37
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.52 E-value=0.019 Score=51.13 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (253)
......||++|...++++.... | ++|..||+.|- .||..||++-+-+-|++|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kY------G----KDW~~IAk~Vg--------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH------S----SCHHHHHHHHS--------SCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHcC--------CCCHHHHHHHHHHHHHHh
Confidence 3456799999999999876542 2 36999999982 389999999776555443
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.46 E-value=0.017 Score=47.32 Aligned_cols=48 Identities=19% Similarity=0.389 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
.....||.+|...|++++... |. ..|..||..|. .||+.||++++.++
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 103 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST--------TCCHHHHHHHHHHT
T ss_pred cCCCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 445689999999999987542 21 35999998773 48999999988763
No 39
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.08 E-value=0.018 Score=51.71 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCC--hhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLR--QKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr--~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (253)
-....||.+|-..||++.... |+.| ++.|.+||..| +.||+-|||++|.++-
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~------Gn~r~ghk~W~~IAk~L--------pGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKN------PTRRTTHTLYDEISHYV--------PNHTGNSIRHRFRVYL 59 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTS------GGGTTCSHHHHHHTTTS--------TTSCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CcCccccccHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 345689999999999988762 2222 35699999866 3489999999999843
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.45 E-value=0.014 Score=46.67 Aligned_cols=44 Identities=18% Similarity=0.437 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025430 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (253)
Q Consensus 24 ~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (253)
.||.+|...|+++.... | ...|..||..| +.||+.||+.++.+.
T Consensus 4 ~Wt~eED~~L~~~v~~~------g---~~~W~~Ia~~~--------~~Rt~~qcr~Rw~~~ 47 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN------G---PQNWPRITSFL--------PNRSPKQCRERWFNH 47 (131)
T ss_dssp SCCHHHHHHHHHHHHHH------C---SCCGGGGTTSC--------TTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------C---cCCHHHHHHHH--------CCCCHHHHHHHHhhc
Confidence 69999999999876543 2 12699999877 248999999988653
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=92.41 E-value=0.5 Score=36.66 Aligned_cols=63 Identities=13% Similarity=0.350 Sum_probs=50.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCC
Q 025430 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (253)
Q Consensus 17 ~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~ 94 (253)
..+..-..||.++-..+|.++..+ |. ..+.|..||..+.. ||..|.++||..|-+-|.+....
T Consensus 28 s~Ge~VvlWTRe~DR~IL~~cQ~~------G~-s~~tFa~iA~~L~N--------ks~nqV~~RFq~Lm~Lf~~~~~~ 90 (95)
T 1ug2_A 28 STGEKVVLWTREADRVILTMCQEQ------GA-QPHTFSVISQQLGN--------KTPVEVSHRFRELMQLFHTACES 90 (95)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHT------TS-CTTTHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHCSSS
T ss_pred CCCCEEEEeccccCHHHHHHHHhc------CC-ChhHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHhcc
Confidence 346777899999999999887653 31 24579999999953 79999999999999999887654
No 42
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=91.23 E-value=0.32 Score=47.39 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI 81 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKi 81 (253)
.....||++|..+++++.... | ++|..||+.|- .||..||++=+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y------G----kdw~~IA~~Vg--------TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------T----TCHHHHHHHHS--------SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHhC--------CCCHHHHHHHH
Confidence 456799999999999876532 2 37999999993 38999999843
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.06 E-value=0.62 Score=32.89 Aligned_cols=47 Identities=17% Similarity=0.432 Sum_probs=34.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCChHHHHH
Q 025430 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKN 79 (253)
Q Consensus 15 ~~~~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~-V~~r~~~~k~~kT~~QCrn 79 (253)
+.+++.....||++|...+++++... .++|..|+.. | ..||..||..
T Consensus 2 ~~~p~~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v--------~~Kt~~~~v~ 49 (63)
T 2yqk_A 2 SSGSSGIEKCWTEDEVKRFVKGLRQY----------GKNFFRIRKELL--------PNKETGELIT 49 (63)
T ss_dssp CCCCCCCCCSCCHHHHHHHHHHHHHT----------CSCHHHHHHHSC--------TTSCHHHHHH
T ss_pred CCCCCcCCCCcCHHHHHHHHHHHHHh----------CccHHHHHHHHc--------CCCcHHHHHH
Confidence 45567778899999998887765421 2368899875 5 3489999963
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=87.48 E-value=0.88 Score=31.91 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCC-ChhhHHHHHH-HHHcccCCCCCCCChHHHHHHHHH
Q 025430 22 EDCWSEGATGTLIEAWGDRYVRLNRGHL-RQKDWKEVAE-SVNSRENGVKPKKTDIQCKNRIDT 83 (253)
Q Consensus 22 ~~~WSe~ET~~LIdawger~~ql~rg~l-r~k~W~eVA~-~V~~r~~~~k~~kT~~QCrnKid~ 83 (253)
...+|.++-..||+--.+ +.... +.+ .+++|+++|+ .+ +..|+.+||+++.+
T Consensus 2 R~~FT~edD~~L~~~v~~-~~~~~-~~~~Gn~iwk~la~~~~--------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKE-NARSP-SSVTGNALWKAMEKSSL--------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHH-TCCST-TTTTSSHHHHHHHHSCS--------SSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-hcccc-CCCccHHHHHHHHHhHC--------CCCCHHHHHHHHHH
Confidence 357899998888874432 22111 233 3689999998 44 45799999998753
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.41 E-value=2.3 Score=32.67 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~ 95 (253)
..||.+||..|++....-.+ .|--|++...-.. ...||..+-|+|+-.+-++..+.+..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~---~~~Rt~EdLK~RyY~v~~~l~~~r~~~ 90 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRAVP 90 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCC---CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 68999999999998765432 3777888875211 135999999999999999888877544
No 46
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=80.87 E-value=0.37 Score=35.54 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 025430 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEK 92 (253)
Q Consensus 19 ~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK 92 (253)
|..-..||.++-..+|..+.++ |. ..+.|..||..++ ||..|..+||..|-+-|.+-|
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~------G~-s~~tfa~iA~~Ln---------ks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKR------GP-SSKTFAYLAAKLD---------KNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4566789999999998877653 32 1257888998873 688999999999999988754
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=72.20 E-value=5 Score=28.78 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=32.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHH-HHcccCCCCCCCChHHHHH
Q 025430 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKN 79 (253)
Q Consensus 18 ~~~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~-V~~r~~~~k~~kT~~QCrn 79 (253)
.+...+.||++|..++.+++... .++|..|+.. | ..||..||-.
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v--------~~Kt~~~~v~ 48 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKY----------GKDFNDIRQDFL--------PWKSLTSIIE 48 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHT----------CSCHHHHHHTTC--------SSSCHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHh----------CccHHHHHHHHc--------CCCCHHHHHH
Confidence 45777899999998887765431 2358889873 5 3489999974
No 48
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=70.58 E-value=16 Score=27.70 Aligned_cols=52 Identities=15% Similarity=0.190 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 025430 186 RAILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKS 238 (253)
Q Consensus 186 ~aI~~f~e~yer~E~~------K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~ 238 (253)
.+|+.-|.+|-+.|.| ++++...|.+.|.....||+.+..+ |.+-|-+|.+.
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~e-i~~le~~i~rh 70 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKE-IERLQKEIERH 70 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 3556666666666665 5566777788886666666665554 45555555544
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=69.38 E-value=3.9 Score=31.01 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHH
Q 025430 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (253)
Q Consensus 21 r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrn 79 (253)
..+.||++|..++.+++... .++|..||..| ..||..||-.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l--------~~Kt~~~cV~ 82 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFL--------ERKTVAECVL 82 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTC--------TTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHc--------CCCCHHHHHH
Confidence 35689999998888777532 35788898766 3589999963
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=59.51 E-value=1.6 Score=32.41 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=30.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnK 80 (253)
+....||.++-.+|-.+-.-. ..+. ..-|+.||+.| +.||..+|+..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~y----p~~t--pdRWekIA~~V--------pGKT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFT----NKDT--PDRWKKVAQYV--------KGRTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSS----CSSC--CSSSTTTGGGS--------CSSCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCC--CcHHHHHHHHc--------CCCCHHHHHHH
Confidence 345589999999998775321 2221 23499999998 34899999753
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=48.89 E-value=43 Score=25.63 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhC
Q 025430 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (253)
Q Consensus 23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~ 93 (253)
+.||.+||..|++.-.+-.+ -|--|++...-.. ...||..+-|.+.=.+-++.-+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----------Rw~vI~DRy~~~~---~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHCCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC----------CeEEEeeccccCC---CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999998665332 3767777764311 1357887777776666666555544
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=34.35 E-value=2e+02 Score=26.91 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 025430 199 ESAKQKQMMELEKERLEFIKDVECERMNMF 228 (253)
Q Consensus 199 E~~K~~~~~elEk~Rmef~kdlE~~r~~~~ 228 (253)
.+.++++...+|+.+.+..+.++.++.+++
T Consensus 532 ~~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 532 ADAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 344556666666777777787888777766
No 53
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=27.25 E-value=99 Score=24.56 Aligned_cols=13 Identities=38% Similarity=0.383 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 025430 199 ESAKQKQMMELEK 211 (253)
Q Consensus 199 E~~K~~~~~elEk 211 (253)
|..|++--.|.|+
T Consensus 56 E~kklqLkse~e~ 68 (115)
T 3vem_A 56 EEKKSILKAELER 68 (115)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4555555444443
No 54
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=25.72 E-value=1.3e+02 Score=22.38 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHhh------HHHhh-hcCCC--ChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025430 20 GREDCWSEGATGTLIEAWGD------RYVRL-NRGHL--RQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (253)
Q Consensus 20 ~r~~~WSe~ET~~LIdawge------r~~ql-~rg~l--r~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~ 90 (253)
..+.-|++.--.+|+++-.- +.+.+ ..|.+ ||. -||+-+..+++ ..+|.+||-..|..||+....
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNe---lIs~yI~~~tG---k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNE---LIARYIKLRTG---KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHH---HHHHHHHHHHS---CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhH---HHHHHHHHHHc---ccCCccchhHHHHHHHHHHhh
Confidence 34568998888888886543 22222 23433 343 48888887764 569999999999999998765
Q ss_pred h
Q 025430 91 E 91 (253)
Q Consensus 91 e 91 (253)
+
T Consensus 78 ~ 78 (82)
T 2hzd_A 78 D 78 (82)
T ss_dssp C
T ss_pred h
Confidence 4
No 55
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.79 E-value=2.2e+02 Score=21.19 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 025430 193 EIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQL 233 (253)
Q Consensus 193 e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ 233 (253)
|+|+..|..=++.+..+.-.+|| ..||..+-..+-.+.|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmE-ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQME-IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 78899987666666668888888 34454454444444333
No 56
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=22.28 E-value=2.9e+02 Score=21.71 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 025430 202 KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQK 237 (253)
Q Consensus 202 K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~ 237 (253)
||.+..+|...-.. ++-++.++++| ++|++|=+
T Consensus 43 Kq~~idelk~ei~q--~~~~lE~I~vL-kaQv~IY~ 75 (110)
T 2v4h_A 43 KQELIDKLKEEAEQ--HKIVMETVPVL-KAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHH--HHHHHTHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 44444444432222 44455667755 77877744
No 57
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=22.14 E-value=1.7e+02 Score=25.95 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.2
Q ss_pred CCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHh
Q 025430 47 GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIE 91 (253)
Q Consensus 47 g~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~e 91 (253)
|.+.-..|++||+.. +..|+..-|+|+.++-+.|-.+
T Consensus 167 gp~~~~~fk~ia~~~--------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEH--------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHT--------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHC--------CCCChhhHHHHHHHHHhhcChH
Confidence 445445899999987 4579999999999998888444
Done!