BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025435
(253 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55EF8|Y9096_DICDI Transmembrane protein DDB_G0269096 OS=Dictyostelium discoideum
GN=DDB_G0269096 PE=4 SV=1
Length = 285
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 64/150 (42%), Gaps = 5/150 (3%)
Query: 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKG-FSITIAPLGAVCAVLFATPSTPAARKYN 158
P L +I W +F + +L + A + I A ++F P +P A+ N
Sbjct: 122 PDLEEIGWTWLASFTGILVLALIHYREALDAQMQVLIGSFAASAVIIFGVPKSPLAQPRN 181
Query: 159 VFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAFMI--YARAPHPPAASLPILFID 214
+ M A +G + ++ + LA S++ M+ + + HPP + ++ +
Sbjct: 182 LIMGHFLSAVVGSVIRVALVYTNANFEVACALAVSLSIMLMQFTNSLHPPGGATALICVM 241
Query: 215 GVKLHSLNFWYALFPGAAGCIILCLIQEIV 244
GV+ F++ P +G +I+ L +V
Sbjct: 242 GVEQRWRGFYFIFVPILSGALIMLLTALVV 271
>sp|Q556Z9|Y3361_DICDI Transmembrane protein DDB_G0273707/DDB_G0273361 OS=Dictyostelium
discoideum GN=DDB_G0273707 PE=4 SV=2
Length = 311
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 68/162 (41%), Gaps = 6/162 (3%)
Query: 89 ESWKP-QKGSSNPSLSDILWPSAGAFAAMAILGKMD-QILAPKGFSITIAPLGAVCAVLF 146
+ WK +K L +I W +F + +L + ++ K + A ++F
Sbjct: 136 KKWKGGEKSPVRADLEEIGWSWLSSFIGILVLALLHYRVTVEKETIFLLGSFAASAVLIF 195
Query: 147 ATPSTPAARKYNVFMSQIGCAAIG--VLAFSIFGPGWLARSAGLAASIAF--MIYARAPH 202
P +P A+ N+ + I A +G + ++ + LA S+A M + ++ H
Sbjct: 196 GAPKSPLAQPRNLVLGHIVSATVGSIIRVALVYTNAQTEVACALAVSLAIVGMHFTKSIH 255
Query: 203 PPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIV 244
PP + ++ + + F+Y P A+G + + L IV
Sbjct: 256 PPGGATALICVMSAEQRWRGFYYIFVPVASGSLTMLLTALIV 297
>sp|Q54TV2|ABCG5_DICDI ABC transporter G family member 5 OS=Dictyostelium discoideum
GN=abcG5 PE=3 SV=1
Length = 1509
Score = 33.1 bits (74), Expect = 1.8, Method: Composition-based stats.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 20/100 (20%)
Query: 165 GCAAIGVLAFSIFGPGWLAR--SAGLAASIAFMI-YARAPHPPAAS------LPILFIDG 215
G AIG + ++ G R +AG S A+MI Y +P S +P +I G
Sbjct: 1280 GMVAIGNIPTTVLERGVFYREVTAGFYHSTAYMISYVLTSYPFILSTGILYIIPTFWIAG 1339
Query: 216 VK--LHSLNFWYALF---------PGAAGCIILCLIQEIV 244
+ HS FWY LF A C+ +CL E++
Sbjct: 1340 LDSGRHSSKFWYCLFIFIITYIMYDAFALCLAVCLPNEVM 1379
>sp|Q28Q60|ISPDF_JANSC Bifunctional enzyme IspD/IspF OS=Jannaschia sp. (strain CCS1)
GN=ispDF PE=3 SV=1
Length = 382
Score = 32.3 bits (72), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 34/76 (44%)
Query: 124 QILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLA 183
++ A +GFSIT A L +C P A R + +I A + V A + G+
Sbjct: 307 ELAANRGFSITNADLTLICEQPKIGPVASAMRARVADLLRIDVARVSVKATTSERLGFTG 366
Query: 184 RSAGLAASIAFMIYAR 199
R G+AA + AR
Sbjct: 367 REEGIAALATITLVAR 382
>sp|Q7PC82|AB42G_ARATH ABC transporter G family member 42 OS=Arabidopsis thaliana
GN=ABCG42 PE=2 SV=1
Length = 1392
Score = 32.0 bits (71), Expect = 4.7, Method: Composition-based stats.
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 113 FAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVL 172
F A+A + + D ++A SI+I L + PS P+ ++ ++S + A IG+
Sbjct: 641 FRAIAAVFR-DFVVATTVGSISIVLLSVFGGFIVRKPSMPSWLEWGFWLSPLSYAEIGLT 699
Query: 173 AFSIFGPGW 181
A F P W
Sbjct: 700 ANEFFAPRW 708
>sp|Q96SN8|CK5P2_HUMAN CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens
GN=CDK5RAP2 PE=1 SV=5
Length = 1893
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 17 ITTAPSLHSCSSFIISKLPDHPLSGNKRSLLLGTSLSFNSNKETTSVIRRRKRKNFEHGI 76
+T +L CS + S +PD L G + LG L N ++ET S R R K+FE+ I
Sbjct: 10 VTVPGTLSGCSGLVPS-VPDD-LDGINPNAGLGNGLLPNVSEETVSPTRARNMKDFENQI 67
>sp|Q69XK5|CESAB_ORYSJ Putative cellulose synthase A catalytic subunit 11 [UDP-forming]
OS=Oryza sativa subsp. japonica GN=CESA11 PE=5 SV=1
Length = 860
Score = 31.2 bits (69), Expect = 7.1, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 146 FATPSTPAARKYN--------VFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIY 197
+ +P+ PA R+Y S+ AA+G+L P W R GL + ++
Sbjct: 564 YCSPARPAFRRYARASPADVLAGASRRAVAAMGILLSRRHSPVWAGRRLGLLQRLGYV-- 621
Query: 198 ARAPHPPAASLPI 210
ARA + P ASLP+
Sbjct: 622 ARASY-PLASLPL 633
>sp|B4SYX3|ARNT_SALNS Undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl
transferase OS=Salmonella newport (strain SL254) GN=arnT
PE=3 SV=1
Length = 548
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 75/195 (38%), Gaps = 18/195 (9%)
Query: 6 RASYYQHNGSSITTAPSLHSCSSFIISK--LPDHPLSGNKRSLLLGTSLSFNSNKETTSV 63
+ +++ NG+ ++ F I+K LP + LS +L ++ KE +
Sbjct: 281 KLGWHERNGAFYLLGWTIMPLLFFSIAKGKLPTYVLSCFAPIAILMARFVLHNVKEGVAA 340
Query: 64 IRRRKRKNFEHGIVASSSNVATPIWESWKPQKGSSNPSLSDI----LWPSAGAFAAMAIL 119
+R N GI+ VA + SW P K +P + I ++ G F A +
Sbjct: 341 LRVNGGINLVFGIIGI---VAAFVVSSWGPLK---SPVWTHIETYKVFCVWGVFTVWAFV 394
Query: 120 GKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGP 179
G +PK PLG F+ P K F ++ A + +
Sbjct: 395 GWYSLCHSPKYLLPAFCPLGLALLFGFSVPDRVMESKQPQFFVEMTQAPLASSRYI---- 450
Query: 180 GWLARSAGLAASIAF 194
LA S G+AA +A+
Sbjct: 451 --LADSVGVAAGLAW 463
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,824,303
Number of Sequences: 539616
Number of extensions: 3639467
Number of successful extensions: 8965
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 8961
Number of HSP's gapped (non-prelim): 18
length of query: 253
length of database: 191,569,459
effective HSP length: 115
effective length of query: 138
effective length of database: 129,513,619
effective search space: 17872879422
effective search space used: 17872879422
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)