Query 025435
Match_columns 253
No_of_seqs 150 out of 590
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 05:48:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025435.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025435hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3448 CBS-domain-containing 100.0 1.6E-42 3.4E-47 321.0 11.4 163 86-250 11-176 (382)
2 PF04982 HPP: HPP family; Int 100.0 1.2E-37 2.7E-42 253.6 10.8 118 133-253 1-118 (120)
3 PF06081 DUF939: Bacterial pro 96.0 0.017 3.7E-07 48.2 5.9 133 104-247 6-140 (141)
4 COG4129 Predicted membrane pro 95.5 0.076 1.7E-06 50.7 8.8 136 103-251 11-150 (332)
5 PF04632 FUSC: Fusaric acid re 80.8 11 0.00024 37.6 9.4 110 97-210 331-445 (650)
6 TIGR01666 YCCS hypothetical me 74.1 10 0.00022 39.9 7.2 116 133-252 34-158 (704)
7 PF04632 FUSC: Fusaric acid re 70.4 28 0.00061 34.8 9.1 90 102-200 2-97 (650)
8 PRK10631 p-hydroxybenzoic acid 68.2 29 0.00062 36.4 8.9 77 100-177 347-423 (652)
9 TIGR01667 YCCS_YHJK integral m 62.4 30 0.00064 36.4 7.8 117 132-252 33-158 (701)
10 TIGR01667 YCCS_YHJK integral m 58.7 42 0.0009 35.3 8.1 95 85-188 366-462 (701)
11 PRK10631 p-hydroxybenzoic acid 56.6 52 0.0011 34.5 8.3 101 101-212 8-129 (652)
12 COG1289 Predicted membrane pro 46.8 92 0.002 32.1 8.3 102 142-244 386-498 (674)
13 COG2879 Uncharacterized small 40.3 9.9 0.00021 28.8 0.1 18 45-62 17-34 (65)
14 PF07271 Cytadhesin_P30: Cytad 36.9 50 0.0011 31.4 4.2 56 164-227 13-72 (279)
15 PF01277 Oleosin: Oleosin; In 32.2 67 0.0015 26.9 3.8 69 173-251 18-86 (118)
16 PF13515 FUSC_2: Fusaric acid 29.5 1.5E+02 0.0032 22.9 5.2 46 154-200 34-79 (128)
17 PF04018 DUF368: Domain of unk 27.5 2.5E+02 0.0054 26.1 7.1 138 101-252 53-217 (257)
18 PF01299 Lamp: Lysosome-associ 26.9 58 0.0013 30.3 2.9 11 226-236 271-281 (306)
19 PF06667 PspB: Phage shock pro 26.8 91 0.002 24.1 3.5 30 222-251 2-31 (75)
20 TIGR01666 YCCS hypothetical me 26.3 3.7E+02 0.0079 28.6 8.8 90 85-183 364-455 (704)
21 COG5477 Predicted small integr 25.8 1.3E+02 0.0028 24.2 4.2 40 157-196 55-95 (97)
22 PF12805 FUSC-like: FUSC-like 25.4 1.6E+02 0.0034 26.9 5.4 22 230-251 78-99 (284)
23 PF07281 INSIG: Insulin-induce 24.9 5E+02 0.011 23.2 10.2 77 168-250 115-191 (193)
24 PF15102 TMEM154: TMEM154 prot 24.2 43 0.00093 29.0 1.4 29 223-251 58-86 (146)
25 TIGR02976 phageshock_pspB phag 23.1 1.2E+02 0.0025 23.4 3.4 30 222-251 2-31 (75)
26 PF10954 DUF2755: Protein of u 22.4 1.1E+02 0.0023 24.9 3.2 25 222-246 72-96 (100)
27 PF11833 DUF3353: Protein of u 21.8 3E+02 0.0066 24.5 6.3 35 86-123 77-111 (194)
28 PF13829 DUF4191: Domain of un 21.4 2.4E+02 0.0052 26.0 5.7 56 156-211 28-94 (224)
29 PF10337 DUF2422: Protein of u 20.3 7.7E+02 0.017 24.1 9.4 65 99-174 13-79 (459)
No 1
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-42 Score=320.96 Aligned_cols=163 Identities=23% Similarity=0.411 Sum_probs=151.1
Q ss_pred hhHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhc--CCCceEEecchhhhHhHHhcCCCCCCccchhhhhhh
Q 025435 86 PIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILA--PKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQ 163 (253)
Q Consensus 86 ~~~~~~~p~~~~~~~~~~d~l~a~lGaflgI~il~~l~~~~~--~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGH 163 (253)
.|++.+.|...+. .++|.+++.+|+++|+++.+.+..+.. +...|++++||||||||+|++|+||+|||||+||||
T Consensus 11 ~wfk~f~P~~~~v--~~rerl~~~~gA~iGilltg~~c~~~~~~~~~lpllvAPmGASAVLLFavpaSPLAQPwsiiGGN 88 (382)
T COG3448 11 YWFKLFHPLTAPV--RLRERLRAAIGALIGILLTGLACGYVLGVDPNLPLLVAPMGASAVLLFAVPASPLAQPWSIIGGN 88 (382)
T ss_pred HHHHhcCcccCCC--CcHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccCcceEEEEeccCCccccchhhhcch
Confidence 3555588877666 669999999999999999999888744 346799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceee-eeccccccccCchhhHHHHHHHHHHHHHHHH
Q 025435 164 IGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPIL-FIDGVKLHSLNFWYALFPGAAGCIILCLIQE 242 (253)
Q Consensus 164 llSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALi-vl~~~~~~~lgw~fvl~PVl~gsllLl~vAl 242 (253)
++||++|+.+.+++|++.+++++||+++|..|+.+||+|||+||.||. +++|+.++++||+|++.||+.++++|+.+|+
T Consensus 89 lvaAlvgvtva~~vgd~~la~~lavsLaI~~M~~~rcLHPPsgAvALtavlgGpav~~~g~~F~l~Pval~SliLv~~a~ 168 (382)
T COG3448 89 LVAALVGVTVAYFVGDPVLASGLAVSLAIGAMFALRCLHPPSGAVALTAVLGGPAVHRLGYNFVLWPVALNSLILVGLAL 168 (382)
T ss_pred HHHHHHhhhhhhhhCChHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhcCcccccCCCCceehhhhhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 6888999999999999999999999999999
Q ss_pred HHhhcccC
Q 025435 243 IVCYLKDN 250 (253)
Q Consensus 243 l~NNL~~~ 250 (253)
+|||+.||
T Consensus 169 lynnl~~r 176 (382)
T COG3448 169 LYNNLTRR 176 (382)
T ss_pred HHHHHhcC
Confidence 99998775
No 2
>PF04982 HPP: HPP family; InterPro: IPR007065 These proteins are integral membrane proteins with four transmembrane spanning helices. The most conserved region of an alignment of the proteins is a motif HPP. The function of these proteins is uncertain but they may be transporters.
Probab=100.00 E-value=1.2e-37 Score=253.61 Aligned_cols=118 Identities=30% Similarity=0.543 Sum_probs=110.8
Q ss_pred EEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceeee
Q 025435 133 ITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILF 212 (253)
Q Consensus 133 lLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALiv 212 (253)
++++||||||+|+|+.|++|+|||||+++||++++++|+++.+++|+.||++++|+++++++|.++||+||||||||+++
T Consensus 1 ll~~s~gAsa~llf~~p~sp~aqP~~vi~gh~isa~iG~~~~~~~~~~~~~~alav~lai~~M~~~~~~HPPA~Atall~ 80 (120)
T PF04982_consen 1 LLLPSFGASAVLLFGAPSSPLAQPRNVIGGHLISALIGVLCVYLFGDPWWAAALAVGLAIVLMVLTRTVHPPAGATALLA 80 (120)
T ss_pred CccccHHHHHHHhhcCCCCchhchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCchhhhhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred eccccccccCchhhHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 025435 213 IDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNVKF 253 (253)
Q Consensus 213 l~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL~~~r~~ 253 (253)
+.++.. +||+|++.||++|+++++.+++++||+.+ |+|
T Consensus 81 ~l~~~~--~~~~~~~~pVl~g~~il~~~a~~~~~l~~-r~Y 118 (120)
T PF04982_consen 81 VLGGAS--LGWGFVLIPVLLGSLILVVVALLFNNLIR-RRY 118 (120)
T ss_pred hhcccc--cCchHHHHHHHHHHHHHHHHHHHHHcCcc-CCC
Confidence 444332 68999999999999999999999999998 777
No 3
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=95.99 E-value=0.017 Score=48.18 Aligned_cols=133 Identities=19% Similarity=0.154 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHH
Q 025435 104 DILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLA 183 (253)
Q Consensus 104 d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlA 183 (253)
..+.+.+++++++.+..++.. +. -..++++|--.+- .+-+.-+-+=++-+.|+++++++|..+..++|++||+
T Consensus 6 r~iKtaiA~~la~~ia~~l~~-----~~-~~~A~i~Ail~~q-~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~ 78 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGL-----QY-PFFAPIAAILSMQ-PTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLS 78 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCC-----Cc-hHHHHHHHhheee-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHH
Confidence 456778888888888766521 21 2344444432221 1222335667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCC--CCCCcceeeeeccccccccCchhhHHHHHHHHHHHHHHHHHHhhc
Q 025435 184 RSAGLAASIAFMIYARAPH--PPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYL 247 (253)
Q Consensus 184 aALAValAI~~M~ltrtvH--PPAGAtALivl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL 247 (253)
.++.+.+.+.....+|.-+ .++..+.+..+..++ .+|.|++.= ....++=+.+|+++|.+
T Consensus 79 ~~l~v~i~i~~~~~l~~~~~~~~a~v~~~~i~~~~~---~~~~~~~~r-~l~t~iG~~va~lVN~~ 140 (141)
T PF06081_consen 79 IGLAVIITIPICNWLKLGEGIIVAAVTFVHILLSGS---DSFSYALNR-VLLTLIGIGVALLVNLL 140 (141)
T ss_pred HHHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHcCC---ccHHHHHHH-HHHHHHHHHHHHHHHHh
Confidence 9999999999999999864 223332222333332 345553322 23455555678888875
No 4
>COG4129 Predicted membrane protein [Function unknown]
Probab=95.49 E-value=0.076 Score=50.73 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCC--CccchhhhhhhHHHHHHHHHHHHHhCch
Q 025435 103 SDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTP--AARKYNVFMSQIGCAAIGVLAFSIFGPG 180 (253)
Q Consensus 103 ~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SP--lAQPrNvigGHllSAliGv~~~~lfg~~ 180 (253)
...+.+.+|+++++.+..++.. +. +-|++-..++---|.-+ +=+=++.+.|+.+++++|+++..++|..
T Consensus 11 ~RtlKt~ia~~La~~ia~~l~~-----~~----~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~ 81 (332)
T COG4129 11 ARTLKTGLAAGLALLIAHLLGL-----PQ----PAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQN 81 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC-----Cc----hHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 5667888888888887764432 22 22333333333333222 3355788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCcceee--eeccccccccCchhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435 181 WLARSAGLAASIAFMIYARAPHPPAASLPIL--FIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 181 wlAaALAValAI~~M~ltrtvHPPAGAtALi--vl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL~~~r 251 (253)
.++.++.+.+.|.++..++-.++=..++.++ ++.+.. +-.+..+-=++...+=+.+|.++|.+....
T Consensus 82 ~~~~~v~~~i~i~~~~~~~~~~g~~~~~~~~~~ii~~~~----~~~~~~~~r~l~~~vG~~~a~lvn~~~~~~ 150 (332)
T COG4129 82 PIAFGVVLLIIIPLLVLLKLENGVVPITVGVLHILVAAM----IPLFLIFNRFLLVFVGVGVAFLVNLVMPPP 150 (332)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHcc----cchhHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 9999999999999999999888655555444 232221 212221113334444455678888765543
No 5
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=80.84 E-value=11 Score=37.62 Aligned_cols=110 Identities=20% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHH
Q 025435 97 SSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI 176 (253)
Q Consensus 97 ~~~~~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~l 176 (253)
+...++.+.+++.+-+++++.+.+.+=.+. +...-....-+.+-..-+|++-+.|.-..+..+.|.++++++|..+..+
T Consensus 331 ~~~~d~~~A~~~alra~la~~~~~l~Wi~t-~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~ 409 (650)
T PF04632_consen 331 PLHRDWPLALRNALRAFLAILIAGLFWIAT-GWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFF 409 (650)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888999999999999887653321 2222223334455555569999999999999999999999999887654
Q ss_pred h-C--ch--HHHHHHHHHHHHHHHHHhCCCCCCCCccee
Q 025435 177 F-G--PG--WLARSAGLAASIAFMIYARAPHPPAASLPI 210 (253)
Q Consensus 177 f-g--~~--wlAaALAValAI~~M~ltrtvHPPAGAtAL 210 (253)
+ + ++ .+...+++.+.+..+. ..||.-...++
T Consensus 410 vlP~~~~f~~L~l~l~~~l~~~~~~---~~~p~~~~~g~ 445 (650)
T PF04632_consen 410 VLPHLDGFPLLALVLAPFLFLGGLL---MARPRTAYIGL 445 (650)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHH---HcCchHHHHHH
Confidence 4 2 12 3344444333333332 34677665444
No 6
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=74.12 E-value=10 Score=39.90 Aligned_cols=116 Identities=23% Similarity=0.286 Sum_probs=73.8
Q ss_pred EEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCccee--
Q 025435 133 ITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPI-- 210 (253)
Q Consensus 133 lLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtAL-- 210 (253)
.+..++|+-|.-+--.|++.--+=+|++..-++.++..+.+..+++.+|+- .+.+.++.++..+++..=|=.+..+.
T Consensus 34 ~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf-~~~l~~~tf~~~mlga~G~Rya~Iaf~t 112 (704)
T TIGR01666 34 SMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLF-AVGLTVSTFGFIMLGAVGQRYATIAFGS 112 (704)
T ss_pred HHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHH-HHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 345678888888888888877778888877666666666666667776543 44444444555555555554433333
Q ss_pred -e----eeccccccccCchhhHHHH--HHHHHHHHHHHHHHhhcccCCC
Q 025435 211 -L----FIDGVKLHSLNFWYALFPG--AAGCIILCLIQEIVCYLKDNVK 252 (253)
Q Consensus 211 -i----vl~~~~~~~lgw~fvl~PV--l~gsllLl~vAll~NNL~~~r~ 252 (253)
+ .+.+.. ..+.||. .|. +.|++.-.+++++++.+.++|.
T Consensus 113 Lliaiytmlg~~--~~~~w~~-~pllll~GalwY~llsl~~~~l~p~rp 158 (704)
T TIGR01666 113 LLVALYTMLGYI--EVNVWFI-QPVMLLCGTLWYSVVTLIVHLFFPNRP 158 (704)
T ss_pred HHHHHHHHhccc--ccchHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 2 133332 2233442 455 5689999999999999988763
No 7
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=70.39 E-value=28 Score=34.76 Aligned_cols=90 Identities=18% Similarity=0.134 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccc--hhhhhhhHHHHHHHHHHHHHhCc
Q 025435 102 LSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARK--YNVFMSQIGCAAIGVLAFSIFGP 179 (253)
Q Consensus 102 ~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQP--rNvigGHllSAliGv~~~~lfg~ 179 (253)
+...++.++++.+++.+..+++. + -+..++.+|.+-.-|++=...- +.-++|-++++++|+++..+|++
T Consensus 2 ~~~alr~~lA~~lAl~ia~~l~l-----~----~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~ 72 (650)
T PF04632_consen 2 LRFALRTALAAMLALYIAFWLQL-----P----HPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQ 72 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-----C----CcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45677888888888888766642 1 1334555555555555433333 44578999999999999888876
Q ss_pred hHHHHH----HHHHHHHHHHHHhCC
Q 025435 180 GWLARS----AGLAASIAFMIYARA 200 (253)
Q Consensus 180 ~wlAaA----LAValAI~~M~ltrt 200 (253)
..+..- +-+++...++.+.+.
T Consensus 73 ~p~l~~~~lal~i~~c~~~~~~~~~ 97 (650)
T PF04632_consen 73 SPLLFLLALALWIGLCLYLSLLDRN 97 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 544333 334444444444444
No 8
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=68.15 E-value=29 Score=36.35 Aligned_cols=77 Identities=12% Similarity=0.019 Sum_probs=56.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIF 177 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lf 177 (253)
.+..+.+++.+.+++++.+.+.+=.. .+...--...-+.|-..-+|+.-+.|...=++.+.|.+++..+|..+....
T Consensus 347 ~~~h~A~~~glRa~~ai~~~~~fWI~-TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~v 423 (652)
T PRK10631 347 AERHHAMINGWRTTLATALGTLFWLW-TGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVI 423 (652)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH-ccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999998754221 222222334446677788999999998889999999999999998876443
No 9
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=62.40 E-value=30 Score=36.36 Aligned_cols=117 Identities=21% Similarity=0.177 Sum_probs=72.3
Q ss_pred eEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcc---
Q 025435 132 SITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASL--- 208 (253)
Q Consensus 132 plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAt--- 208 (253)
..+..++|+-|.-+=-.|++.--+=+|++.+-++.+++.+.+..+++.+|+- .+.+.+.-++..+++..=+=.+..
T Consensus 33 ~~i~l~lG~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~-~~~l~~~tf~~~mlga~G~r~~~I~f~ 111 (701)
T TIGR01667 33 LLIPLCLGIIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLF-PFLLTLLTFGFILLGALGQRYATIAFA 111 (701)
T ss_pred HHHHHHHhhHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH-HHHHHHHHHHHHHHHHhhhhHHhHHHH
Confidence 3455678887777777777777778888888888777777777777777553 333333334444444444444311
Q ss_pred eee----eeccccccccCchhhHHHH--HHHHHHHHHHHHHHhhcccCCC
Q 025435 209 PIL----FIDGVKLHSLNFWYALFPG--AAGCIILCLIQEIVCYLKDNVK 252 (253)
Q Consensus 209 ALi----vl~~~~~~~lgw~fvl~PV--l~gsllLl~vAll~NNL~~~r~ 252 (253)
+|+ .+.+.. ..+-||. .|. +.|++.-.++.+++..+.++|.
T Consensus 112 ~L~~aiytml~~~--~~~~w~~-~pllll~GalwY~l~sll~~~l~p~rp 158 (701)
T TIGR01667 112 SLLAAIYTMLGAG--EVPVWFI-EPLLILAGTLWYGLLTLIWFLLFPNQP 158 (701)
T ss_pred HHHHHHHHHcCcc--cccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 111 233433 2233332 333 4689989999999999998763
No 10
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=58.70 E-value=42 Score=35.31 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=56.0
Q ss_pred hhhHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCc--cchhhhhh
Q 025435 85 TPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAA--RKYNVFMS 162 (253)
Q Consensus 85 ~~~~~~~~p~~~~~~~~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlA--QPrNvigG 162 (253)
+..|.+++..-.+..+-++..++..++.++++++..++.. +++. | ..-++++-.-|+.-.. +=+.-+.|
T Consensus 366 ~~~~~~l~~~l~~~S~~fRhAlR~ala~~~a~~i~~~l~l---~~gy-W-----i~lTv~~V~qP~~~~T~~R~~~Ri~G 436 (701)
T TIGR01667 366 KDILPRLKSHLTPESPLFRHAVRLSLVVMLGYAILMGTAL---HLGY-W-----ILLTTLFVCQPNYGATRLRLVQRIIG 436 (701)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhCC---Ccch-H-----HHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 3456666654444455789999999988888888765532 1111 1 1122222233433333 33456789
Q ss_pred hHHHHHHHHHHHHHhCchHHHHHHHH
Q 025435 163 QIGCAAIGVLAFSIFGPGWLARSAGL 188 (253)
Q Consensus 163 HllSAliGv~~~~lfg~~wlAaALAV 188 (253)
.++++++|+.+..+++..+....+.+
T Consensus 437 Tl~G~llg~~l~~l~p~~~~~l~l~v 462 (701)
T TIGR01667 437 TVVGLVIGVALHFLIPSLEGQLTLMV 462 (701)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999888777776554434433
No 11
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=56.64 E-value=52 Score=34.53 Aligned_cols=101 Identities=10% Similarity=-0.057 Sum_probs=56.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhc---------CCCCCC--ccchhhhhhhHHHHHH
Q 025435 101 SLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFA---------TPSTPA--ARKYNVFMSQIGCAAI 169 (253)
Q Consensus 101 ~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~---------~P~SPl--AQPrNvigGHllSAli 169 (253)
.+...+..++.+.+++.+-.+++ .+.| -.++.+|.+.. -|.+-. ++=..-+.|.++++++
T Consensus 8 ~~~falk~~lA~~LAL~ia~~l~-----L~~P----~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~ 78 (652)
T PRK10631 8 RLRFAVKLAFAIVLALFVGFHFQ-----LETP----RWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIA 78 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-----CCCc----cHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHH
Confidence 45666666776666666544433 1222 23444444443 233322 2333557899999999
Q ss_pred HHHHHHHhCchHHHH----HHHHHHHHHHHHHhCCCCCC------CCcceeee
Q 025435 170 GVLAFSIFGPGWLAR----SAGLAASIAFMIYARAPHPP------AASLPILF 212 (253)
Q Consensus 170 Gv~~~~lfg~~wlAa----ALAValAI~~M~ltrtvHPP------AGAtALiv 212 (253)
|+.+..+|++.++-. ++-+|+.+.+..+.|. |= ||-|+.++
T Consensus 79 ~l~l~~~f~~~p~l~~l~l~lWig~c~~~s~l~r~--~~sY~~~LaGyTa~iI 129 (652)
T PRK10631 79 ALVIIIATIRAPLLMILLCCIWAGFCTWISSLVRV--ENSYAWGLAGYTALII 129 (652)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHH
Confidence 999988887654333 3334444444445553 33 56676653
No 12
>COG1289 Predicted membrane protein [Function unknown]
Probab=46.78 E-value=92 Score=32.09 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=57.4
Q ss_pred HhHHhcCCC---CCCccchhhhhhhHHHHHHHHHHHHHhCchHHH-HHHHHHHHHHHHHHhCCCCCCCCcceee--e---
Q 025435 142 CAVLFATPS---TPAARKYNVFMSQIGCAAIGVLAFSIFGPGWLA-RSAGLAASIAFMIYARAPHPPAASLPIL--F--- 212 (253)
Q Consensus 142 AVLlF~~P~---SPlAQPrNvigGHllSAliGv~~~~lfg~~wlA-aALAValAI~~M~ltrtvHPPAGAtALi--v--- 212 (253)
.+.+.+.|. .|.-+=++-+.|-+++.++|..+..+.++.+.- ..+.+..++++|..+++..|.-+..... +
T Consensus 386 t~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~ 465 (674)
T COG1289 386 TAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLIPGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFL 465 (674)
T ss_pred HHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 344445555 333444566778888888888877777665433 4555566667778887777665544422 1
Q ss_pred --eccccccccCchhhHHHHHHHHHHHHHHHHHH
Q 025435 213 --IDGVKLHSLNFWYALFPGAAGCIILCLIQEIV 244 (253)
Q Consensus 213 --l~~~~~~~lgw~fvl~PVl~gsllLl~vAll~ 244 (253)
+.+.+.....+.= +.=+++|+++-+++++++
T Consensus 466 ~~l~~~~~~~~~~~r-~~d~~iG~lIa~~~a~~v 498 (674)
T COG1289 466 VGLLGSNGPDYDLPR-FLDTLLGSLIALALAFLV 498 (674)
T ss_pred HHHcccchhhhhHHH-HHHHHHHHHHHHHHHHHH
Confidence 1222221122221 234567777766666643
No 13
>COG2879 Uncharacterized small protein [Function unknown]
Probab=40.34 E-value=9.9 Score=28.78 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=15.6
Q ss_pred cceecccccccchHHhhh
Q 025435 45 SLLLGTSLSFNSNKETTS 62 (253)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~ 62 (253)
+...|++.|||-++||.+
T Consensus 17 ~lmvGvpdYdnYVehmr~ 34 (65)
T COG2879 17 KLMVGVPDYDNYVEHMRK 34 (65)
T ss_pred HHHcCCCcHHHHHHHHHH
Confidence 567899999999999943
No 14
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=36.93 E-value=50 Score=31.36 Aligned_cols=56 Identities=14% Similarity=0.105 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcce----eeeeccccccccCchhhH
Q 025435 164 IGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLP----ILFIDGVKLHSLNFWYAL 227 (253)
Q Consensus 164 llSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtA----Livl~~~~~~~lgw~fvl 227 (253)
+++.++|+.+. .+++...|..| +..=-++-|||.--.= -..+.+.++.+..||+..
T Consensus 13 ~~~~~~~~~~~-------~~~~~~l~~~~-~~~~~~~e~~~~~v~h~~e~t~~~~~~~i~~~~W~~P~ 72 (279)
T PF07271_consen 13 LLAWLLFVSVL-------FSALIVLATLI-LVQHNNYESPLNVVLHEEEDTNQIQGRPITEQSWFIPV 72 (279)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHhh-eeeccCccCCceEEEecccccceeCCeecccccceeee
Confidence 34555555442 33344444444 4455678899853210 113566678888998754
No 15
>PF01277 Oleosin: Oleosin; InterPro: IPR000136 Oleosins [] are the proteinaceous components of plants' lipid storage bodies called oil bodies. Oil bodies are small droplets (0.2 to 1.5 mu-m in diameter) containing mostly triacylglycerol that are surrounded by a phospholipid/ oleosin annulus. Oleosins may have a structural role in stabilising the lipid body during dessication of the seed, by preventing coalescence of the oil. They may also provide recognition signals for specific lipase anchorage in lipolysis during seedling growth. Oleosins are found in the monolayer lipid/ water interface of oil bodies and probably interact with both the lipid and phospholipid moieties. Oleosins are proteins of 16 Kd to 24 Kd and are composed of three domains: an N-terminal hydrophilic region of variable length (from 30 to 60 residues); a central hydrophobic domain of about 70 residues and a C-terminal amphipathic region of variable length (from 60 to 100 residues). The central hydrophobic domain is proposed to be made up of beta-strand structure and to interact with the lipids []. It is the only domain whose sequence is conserved.; GO: 0012511 monolayer-surrounded lipid storage body, 0016021 integral to membrane
Probab=32.17 E-value=67 Score=26.87 Aligned_cols=69 Identities=20% Similarity=0.236 Sum_probs=34.1
Q ss_pred HHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceeeeeccccccccCchhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435 173 AFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 173 ~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALivl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL~~~r 251 (253)
...+-|.+..+..++..++.-+..++--+==|++.+.-++.. | | +.--.+|...+-.+.|++|++++++
T Consensus 18 LL~LaGlTL~gtvigL~vatPLfvifSPVlVPaai~~~l~~~-------G--f-l~sg~~g~~~ls~lsW~~~y~rg~~ 86 (118)
T PF01277_consen 18 LLVLAGLTLAGTVIGLAVATPLFVIFSPVLVPAAIAIGLAVA-------G--F-LTSGAFGLTALSSLSWMYNYFRGRH 86 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHH-------H--H-HHhHHHHHHHHHHHHHHHHHhccCC
Confidence 333445554455555555555555554333344433222111 1 1 1122334455666788999988875
No 16
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=29.50 E-value=1.5e+02 Score=22.86 Aligned_cols=46 Identities=11% Similarity=0.180 Sum_probs=29.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCC
Q 025435 154 ARKYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASIAFMIYARA 200 (253)
Q Consensus 154 AQPrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI~~M~ltrt 200 (253)
-+-++-+.|.+++.++|..+..+++..+ ...+.+.+.......++.
T Consensus 34 ~~~~~Ri~Gt~iG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 79 (128)
T PF13515_consen 34 NRAIQRILGTLIGVVLGLLLLYLFPGNY-VLILIVFLLMFLIFYFLS 79 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHh
Confidence 3456788899999999998887777763 333444444444444443
No 17
>PF04018 DUF368: Domain of unknown function (DUF368); InterPro: IPR007163 This is a predicted transmembrane family of unknown function. Proteins usually have between 6 and 9 predicted transmembrane segments.
Probab=27.54 E-value=2.5e+02 Score=26.15 Aligned_cols=138 Identities=20% Similarity=0.259 Sum_probs=86.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhh-hcCCC---ceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHHHH
Q 025435 101 SLSDILWPSAGAFAAMAILGKMDQI-LAPKG---FSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAFSI 176 (253)
Q Consensus 101 ~~~d~l~a~lGaflgI~il~~l~~~-~~~~~---~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~~l 176 (253)
+++-.+--.+|..+|+...+.+-.+ ++.+. ..+.++=.-+|...++--.+. -++++ ++..++|.+...+
T Consensus 53 ~~~fL~~l~~G~~~gi~~~s~~i~~ll~~yp~~t~~fF~GLIlgSip~l~k~~~~--~~~~~-----~~~~~~g~~i~~~ 125 (257)
T PF04018_consen 53 NLKFLLPLGIGILIGILLFSKVISYLLENYPIPTYSFFFGLILGSIPFLYKEIKK--FSPKS-----IIFFLLGAIIALL 125 (257)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcc--CCHHH-----HHHHHHHHHHHHH
Confidence 7788888899999999998866544 33222 235566666777777776444 44444 3444444433222
Q ss_pred h------------CchHHHHHHHHHHHHHHHHHhCCCCCCCCcceee-eecc------cccccc---CchhhHHHHHHHH
Q 025435 177 F------------GPGWLARSAGLAASIAFMIYARAPHPPAASLPIL-FIDG------VKLHSL---NFWYALFPGAAGC 234 (253)
Q Consensus 177 f------------g~~wlAaALAValAI~~M~ltrtvHPPAGAtALi-vl~~------~~~~~l---gw~fvl~PVl~gs 234 (253)
+ .+..+..-++-.+++..|.+ ||-.-+++ .+.| ..+.++ ++. ++.|..+|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~lf~~G~ia~~AMIl------PGiSGS~iLlilG~Y~~vl~ai~~~~~~~~~-~L~~f~~G~ 198 (257)
T PF04018_consen 126 LSFLSSATQSSLSNPSYLYLFLAGAIAACAMIL------PGISGSFILLILGLYEPVLSAISDLIDSNIP-VLIPFGIGV 198 (257)
T ss_pred HHHccccchhccCcchHHHHHHHHHHHHHHHhc------CCCcHHHHHHHHHhHHHHHHHHHHhhhhhhH-HHHHHHHHH
Confidence 1 12345566777778888887 65554444 2222 124455 555 467888898
Q ss_pred HH-HHHHHHHHhhcccCCC
Q 025435 235 II-LCLIQEIVCYLKDNVK 252 (253)
Q Consensus 235 ll-Ll~vAll~NNL~~~r~ 252 (253)
++ +++++-+++++.+|++
T Consensus 199 ~~Gi~~~skll~~ll~~~~ 217 (257)
T PF04018_consen 199 VIGILLFSKLLSYLLKRYR 217 (257)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 77 8888999999888764
No 18
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=26.87 E-value=58 Score=30.25 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=7.9
Q ss_pred hHHHHHHHHHH
Q 025435 226 ALFPGAAGCII 236 (253)
Q Consensus 226 vl~PVl~gsll 236 (253)
.++|+++|+.+
T Consensus 271 ~~vPIaVG~~L 281 (306)
T PF01299_consen 271 DLVPIAVGAAL 281 (306)
T ss_pred chHHHHHHHHH
Confidence 46799888655
No 19
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=26.84 E-value=91 Score=24.05 Aligned_cols=30 Identities=20% Similarity=0.167 Sum_probs=22.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435 222 NFWYALFPGAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 222 gw~fvl~PVl~gsllLl~vAll~NNL~~~r 251 (253)
+..|+..|+.+..+++..+-++.++..+++
T Consensus 2 ~~~fl~~plivf~ifVap~WL~lHY~sk~~ 31 (75)
T PF06667_consen 2 SFEFLFVPLIVFMIFVAPIWLILHYRSKWK 31 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 345677787777777777788888887765
No 20
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=26.29 E-value=3.7e+02 Score=28.57 Aligned_cols=90 Identities=16% Similarity=0.131 Sum_probs=53.9
Q ss_pred hhhHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhcCCCceEEecchhhhHhHHhcCCCCCCc--cchhhhhh
Q 025435 85 TPIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMDQILAPKGFSITIAPLGAVCAVLFATPSTPAA--RKYNVFMS 162 (253)
Q Consensus 85 ~~~~~~~~p~~~~~~~~~~d~l~a~lGaflgI~il~~l~~~~~~~~~plLiasfGASAVLlF~~P~SPlA--QPrNvigG 162 (253)
...|.+++..-.+..+.++..++-.++.+++.++..++.. +++. | ..-++++-.-|+--.. +=+.-+.|
T Consensus 364 ~~~~~~l~~~l~~~S~~fRhAlRlalal~~a~~i~~~l~l---~~gy-W-----i~LTv~~V~qP~~~~T~~R~~~Ri~G 434 (704)
T TIGR01666 364 KNIWARIFSHFTFESPLFRHAVRLSIVLFLGYAIIQFFGF---NLGY-W-----ILLTTLFVCQPNYSATKVRLRQRIIG 434 (704)
T ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHhCC---CCCc-h-----HHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3456666665555555788999999988888887765542 1121 1 1112222222332222 33456789
Q ss_pred hHHHHHHHHHHHHHhCchHHH
Q 025435 163 QIGCAAIGVLAFSIFGPGWLA 183 (253)
Q Consensus 163 HllSAliGv~~~~lfg~~wlA 183 (253)
.++++++|+.+..+.++.++.
T Consensus 435 TllG~~lg~~ll~l~p~~~~~ 455 (704)
T TIGR01666 435 TLLGVVIGSPLLYFNPSLELQ 455 (704)
T ss_pred HHHHHHHHHHHHHHhccHHHH
Confidence 999999999888777765443
No 21
>COG5477 Predicted small integral membrane protein [Function unknown]
Probab=25.79 E-value=1.3e+02 Score=24.24 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=31.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHH
Q 025435 157 YNVFMSQIGCAAIGVLAFSIFGP-GWLARSAGLAASIAFMI 196 (253)
Q Consensus 157 rNvigGHllSAliGv~~~~lfg~-~wlAaALAValAI~~M~ 196 (253)
..++.|-+-||.|-++-.-+.|. -||+.++++..++.+|.
T Consensus 55 DRLFisLLgsAyIhLAWlGLvg~nlWwa~alS~~yaigvfr 95 (97)
T COG5477 55 DRLFISLLGSAYIHLAWLGLVGENLWWALALSVVYAIGVFR 95 (97)
T ss_pred ceehHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHhhee
Confidence 46777888888888877666665 59999999999988774
No 22
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=25.37 E-value=1.6e+02 Score=26.89 Aligned_cols=22 Identities=18% Similarity=0.048 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHhhcccCC
Q 025435 230 GAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 230 Vl~gsllLl~vAll~NNL~~~r 251 (253)
+++|++.=.++++++..+.++|
T Consensus 78 ~~~Gglwy~~lsl~~~~l~p~r 99 (284)
T PF12805_consen 78 FLAGGLWYLLLSLLWWPLRPYR 99 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcCCC
Confidence 5568888888899998888876
No 23
>PF07281 INSIG: Insulin-induced protein (INSIG)
Probab=24.87 E-value=5e+02 Score=23.15 Aligned_cols=77 Identities=8% Similarity=-0.137 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHHHhCCCCCCCCcceeeeeccccccccCchhhHHHHHHHHHHHHHHHHHHhhc
Q 025435 168 AIGVLAFSIFGPGWLARSAGLAASIAFMIYARAPHPPAASLPILFIDGVKLHSLNFWYALFPGAAGCIILCLIQEIVCYL 247 (253)
Q Consensus 168 liGv~~~~lfg~~wlAaALAValAI~~M~ltrtvHPPAGAtALivl~~~~~~~lgw~fvl~PVl~gsllLl~vAll~NNL 247 (253)
+.....-.+|+.+.-.-.+++..+++.+...--+.|.+-.... .+.. .. ..+++-++ .--..++..-...+.|+
T Consensus 115 lln~~LW~lfDrT~sGf~ls~~va~~g~~~~~~l~~~~~~~~~-~~~~--~~--~~d~~~v~-~Wi~sv~Fcg~v~fGni 188 (193)
T PF07281_consen 115 LLNPGLWWLFDRTRSGFLLSTAVALLGTLIEYGLVPDAVMLEN-GVYS--YT--SPDFLAVR-SWIPSVLFCGCVCFGNI 188 (193)
T ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHHHhheeeccccccccc-ccee--cc--ccchhHHH-HHHHHHHHhCcceEeee
Confidence 3444445667766555556666666667676666662211111 1111 11 22332222 33334455557788888
Q ss_pred ccC
Q 025435 248 KDN 250 (253)
Q Consensus 248 ~~~ 250 (253)
.|+
T Consensus 189 GR~ 191 (193)
T PF07281_consen 189 GRQ 191 (193)
T ss_pred hhc
Confidence 875
No 24
>PF15102 TMEM154: TMEM154 protein family
Probab=24.19 E-value=43 Score=29.01 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=17.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435 223 FWYALFPGAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 223 w~fvl~PVl~gsllLl~vAll~NNL~~~r 251 (253)
..++++|..+.+++|+.+-+++-..+|||
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 45678885556555555555555555554
No 25
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=23.07 E-value=1.2e+02 Score=23.40 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=21.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhhcccCC
Q 025435 222 NFWYALFPGAAGCIILCLIQEIVCYLKDNV 251 (253)
Q Consensus 222 gw~fvl~PVl~gsllLl~vAll~NNL~~~r 251 (253)
+.+|+..|..+..+++..+=++.++..+++
T Consensus 2 ~~~fl~~Pliif~ifVap~wl~lHY~~k~~ 31 (75)
T TIGR02976 2 SIFFLAIPLIIFVIFVAPLWLILHYRSKRK 31 (75)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 356778888877777667777778776654
No 26
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=22.36 E-value=1.1e+02 Score=24.92 Aligned_cols=25 Identities=36% Similarity=0.655 Sum_probs=21.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHhh
Q 025435 222 NFWYALFPGAAGCIILCLIQEIVCY 246 (253)
Q Consensus 222 gw~fvl~PVl~gsllLl~vAll~NN 246 (253)
|-.|-+.|.+.||+++-++|+++.+
T Consensus 72 gTlFgLiPFL~Gc~~~~v~~l~lrw 96 (100)
T PF10954_consen 72 GTLFGLIPFLAGCLILGVIALILRW 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999988765
No 27
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=21.77 E-value=3e+02 Score=24.46 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=16.5
Q ss_pred hhHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 025435 86 PIWESWKPQKGSSNPSLSDILWPSAGAFAAMAILGKMD 123 (253)
Q Consensus 86 ~~~~~~~p~~~~~~~~~~d~l~a~lGaflgI~il~~l~ 123 (253)
+|++++.|.-..| +-.++.+. .+.|.++++..++.
T Consensus 77 ~wl~~~~~~~~~P--~~~~l~~~-~~~f~~L~~~~~~~ 111 (194)
T PF11833_consen 77 PWLQRLLPSFDTP--SSQDLLIR-AAAFGALGLWSLLF 111 (194)
T ss_pred hHHHhcccceeCC--CcchHHHH-HHHHHHHHHHHHHH
Confidence 4666675532222 33555553 33445555544443
No 28
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.43 E-value=2.4e+02 Score=26.04 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=31.9
Q ss_pred chhhhhhhHHHHHHHHHHHHHhCchHHHHHHHHHHHH--HHHHHh---------CCCCCCCCcceee
Q 025435 156 KYNVFMSQIGCAAIGVLAFSIFGPGWLARSAGLAASI--AFMIYA---------RAPHPPAASLPIL 211 (253)
Q Consensus 156 PrNvigGHllSAliGv~~~~lfg~~wlAaALAValAI--~~M~lt---------rtvHPPAGAtALi 211 (253)
+|-+++.=++..++++++..++|..|+-.-+++.+++ +.+.++ +.-==||+|-+.+
T Consensus 28 ~~~ml~a~l~~~~v~v~ig~l~~~~~~~~i~gi~~g~l~am~vl~rra~ra~Y~qieGqpGAa~avL 94 (224)
T PF13829_consen 28 PWLMLGAFLGPIAVFVLIGLLFGSWWYWLIIGILLGLLAAMIVLSRRAQRAAYAQIEGQPGAAGAVL 94 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHH
Confidence 3445555556667777788888866554444444433 333333 3344577776655
No 29
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=20.32 E-value=7.7e+02 Score=24.11 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHH--HHhhhcCCCceEEecchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHHH
Q 025435 99 NPSLSDILWPSAGAFAAMAILGK--MDQILAPKGFSITIAPLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLAF 174 (253)
Q Consensus 99 ~~~~~d~l~a~lGaflgI~il~~--l~~~~~~~~~plLiasfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~~ 174 (253)
+.+++-++++++..++++++... ...++.. ..+++ +++.+-. |-.+|+....=..+..++|+++.
T Consensus 13 ~~~~k~~~k~~i~~~i~~~l~~i~~~~~~~g~--~~yl~------~i~~~~~---~p~~~~~~~~~~~~~~~~g~~~g 79 (459)
T PF10337_consen 13 RRSLKIMFKCWIAPWIALILCQIPPVARWLGT--AGYLA------PIISVIV---PPGRPRGKFLEAMILLLLGVCLG 79 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHhcc--hhHHH------HHHHHHc---CCCchHHHHHHHHHHHHHHHHHH
Confidence 45788999999999999888632 2222211 11111 1112222 22777777776666666776654
Done!