Query 025435
Match_columns 253
No_of_seqs 150 out of 590
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 10:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025435.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025435hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_B Integrin beta-3; transm 13.5 2.4E+02 0.0082 20.6 4.3 27 96-122 4-30 (79)
2 2lcn_A WALP19-P10 peptide; pro 13.2 1.3E+02 0.0045 17.8 2.2 16 181-196 4-19 (26)
3 2k1a_A Integrin alpha-IIB; sin 12.8 3.1E+02 0.011 17.9 4.5 25 220-244 7-32 (42)
4 2l8s_A Integrin alpha-1; trans 10.2 4E+02 0.014 18.4 4.3 32 221-252 7-41 (54)
5 2knc_A Integrin alpha-IIB; tra 10.0 3.7E+02 0.013 18.6 4.1 25 220-244 9-34 (54)
6 2nq2_A Hypothetical ABC transp 8.4 1E+03 0.036 21.1 9.9 32 136-173 103-134 (337)
7 3iyz_A Aquaporin-4; water tran 8.2 1.1E+03 0.039 21.4 8.0 16 107-122 138-153 (340)
8 2l2t_A Receptor tyrosine-prote 7.9 2.6E+02 0.0088 18.6 2.5 6 238-243 24-29 (44)
9 2k9j_B Integrin beta-3; transm 7.6 5E+02 0.017 16.8 4.1 24 97-120 4-27 (43)
10 2ww9_B Protein transport prote 6.9 5.8E+02 0.02 18.9 4.2 27 99-125 41-67 (80)
No 1
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.50 E-value=2.4e+02 Score=20.60 Aligned_cols=27 Identities=22% Similarity=0.417 Sum_probs=16.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHH
Q 025435 96 GSSNPSLSDILWPSAGAFAAMAILGKM 122 (253)
Q Consensus 96 ~~~~~~~~d~l~a~lGaflgI~il~~l 122 (253)
.|+.++..-++...+|+.+.++++.++
T Consensus 4 Cp~~~n~~~Iv~gvi~gilliGlllll 30 (79)
T 2knc_B 4 GSKGPDILVVLLSVMGAILLIGLAALL 30 (79)
T ss_dssp SCSSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 444556677777777776666665443
No 2
>2lcn_A WALP19-P10 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=13.20 E-value=1.3e+02 Score=17.83 Aligned_cols=16 Identities=31% Similarity=0.484 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 025435 181 WLARSAGLAASIAFMI 196 (253)
Q Consensus 181 wlAaALAValAI~~M~ 196 (253)
|++.++|-++++++-.
T Consensus 4 wlalalapalalalww 19 (26)
T 2lcn_A 4 WLALALAPALALALWW 19 (26)
T ss_pred HHHHHHhHHHHHHHHH
Confidence 5677787777776644
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=12.79 E-value=3.1e+02 Score=17.93 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=14.3
Q ss_pred ccCchhhHHHHHHHHHHHHH-HHHHH
Q 025435 220 SLNFWYALFPGAAGCIILCL-IQEIV 244 (253)
Q Consensus 220 ~lgw~fvl~PVl~gsllLl~-vAll~ 244 (253)
+..||.++.-++.|-+++.+ +..++
T Consensus 7 ~vp~wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 7 AIPIWWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666666666555444 34444
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.23 E-value=4e+02 Score=18.44 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=17.1
Q ss_pred cCchhhHHHHHHHHHHHHH-HHHHH--hhcccCCC
Q 025435 221 LNFWYALFPGAAGCIILCL-IQEIV--CYLKDNVK 252 (253)
Q Consensus 221 lgw~fvl~PVl~gsllLl~-vAll~--NNL~~~r~ 252 (253)
..||.++.-++.|-+++.+ +..+| .-++|+|+
T Consensus 7 vp~WiIi~svl~GLLLL~Lii~~LwK~GFFKR~~~ 41 (54)
T 2l8s_A 7 VPLWVILLSAFAGLLLLMLLILALWKIGFFKRPLK 41 (54)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCS
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCcccCCCc
Confidence 4677666666666555443 33444 33455544
No 5
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.02 E-value=3.7e+02 Score=18.55 Aligned_cols=25 Identities=16% Similarity=0.525 Sum_probs=14.3
Q ss_pred ccCchhhHHHHHHHHHHHHH-HHHHH
Q 025435 220 SLNFWYALFPGAAGCIILCL-IQEIV 244 (253)
Q Consensus 220 ~lgw~fvl~PVl~gsllLl~-vAll~ 244 (253)
...||.++.-++.|-+++.+ +..+|
T Consensus 9 ~vp~wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 9 AIPIWWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677666666666555443 33444
No 6
>2nq2_A Hypothetical ABC transporter permease protein HI1471; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=8.42 E-value=1e+03 Score=21.15 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=16.3
Q ss_pred cchhhhHhHHhcCCCCCCccchhhhhhhHHHHHHHHHH
Q 025435 136 APLGAVCAVLFATPSTPAARKYNVFMSQIGCAAIGVLA 173 (253)
Q Consensus 136 asfGASAVLlF~~P~SPlAQPrNvigGHllSAliGv~~ 173 (253)
+.+|+...++++.+ ++....+-++.++++..+
T Consensus 103 A~~g~~l~~~~g~~------~~~~~~~A~~gal~a~~l 134 (337)
T 2nq2_A 103 SAFGGTLAIFFGFS------LYGLFTSTILFGFGTLAL 134 (337)
T ss_dssp HHHHHHHHHHTTCC------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHH
Confidence 46777777777532 233334444444444443
No 7
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=8.20 E-value=1.1e+03 Score=21.44 Aligned_cols=16 Identities=25% Similarity=0.171 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 025435 107 WPSAGAFAAMAILGKM 122 (253)
Q Consensus 107 ~a~lGaflgI~il~~l 122 (253)
-.++|+++|-+++-.+
T Consensus 138 AQ~lGA~~GA~lv~~~ 153 (340)
T 3iyz_A 138 AQCLGAIIGAGILYLV 153 (340)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3478888887766543
No 8
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=7.89 E-value=2.6e+02 Score=18.58 Aligned_cols=6 Identities=0% Similarity=0.086 Sum_probs=2.2
Q ss_pred HHHHHH
Q 025435 238 CLIQEI 243 (253)
Q Consensus 238 l~vAll 243 (253)
+++++.
T Consensus 24 ~ii~~~ 29 (44)
T 2l2t_A 24 VIVGLT 29 (44)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=7.59 E-value=5e+02 Score=16.76 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=14.2
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHH
Q 025435 97 SSNPSLSDILWPSAGAFAAMAILG 120 (253)
Q Consensus 97 ~~~~~~~d~l~a~lGaflgI~il~ 120 (253)
|+.++..-++...+|+.+.++++.
T Consensus 4 p~~~n~~~Iv~gvi~~ivliGl~l 27 (43)
T 2k9j_B 4 PKGPDILVVLLSVMGAILLIGLAA 27 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCEeehHHHHHHHHHHHHHHH
Confidence 344566666667777666555443
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=6.92 E-value=5.8e+02 Score=18.89 Aligned_cols=27 Identities=11% Similarity=0.097 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 99 NPSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 99 ~~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
.|+..|.....--+.+|++++|.+...
T Consensus 41 KPdr~Ef~~iak~t~iG~~imG~IGfi 67 (80)
T 2ww9_B 41 KPDLKEYTKIVKAVGIGFIAVGIIGYA 67 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Done!