Query 025435
Match_columns 253
No_of_seqs 150 out of 590
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 10:16:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025435.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025435hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3b45a1 f.51.1.1 (A:91-270) Gl 9.1 1.6E+02 0.012 21.3 4.3 16 160-175 161-176 (180)
2 d1rh5b_ f.23.28.1 (B:) Preprot 8.9 2.2E+02 0.016 18.3 4.2 27 99-125 17-43 (56)
3 d1ml8a_ d.227.1.2 (A:) Hypothe 5.9 2.7E+02 0.02 19.0 4.0 26 100-125 34-59 (134)
4 d1xaka_ b.1.24.1 (A:) Accessor 5.4 71 0.0052 21.1 0.2 15 31-45 27-41 (68)
5 d1vlaa_ d.227.1.2 (A:) Hypothe 5.4 3E+02 0.022 18.8 4.0 25 100-124 42-66 (144)
6 d2onfa1 d.227.1.1 (A:1-139) Hy 5.0 3E+02 0.022 18.8 3.7 26 100-125 40-65 (139)
7 d1ukka_ d.227.1.1 (A:) Hypothe 4.9 3.1E+02 0.022 18.9 3.7 26 100-125 43-68 (141)
8 d1uspa_ d.227.1.1 (A:) Organic 4.8 3.2E+02 0.023 18.5 3.7 26 100-125 42-67 (137)
9 d1n2fa_ d.227.1.1 (A:) Organic 4.7 3.2E+02 0.024 18.7 3.7 26 100-125 47-72 (142)
10 d2d7va1 d.227.1.1 (A:7-161) Hy 4.7 4.3E+02 0.032 18.5 4.6 28 98-125 55-82 (155)
No 1
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}
Probab=9.06 E-value=1.6e+02 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.084 Sum_probs=8.3
Q ss_pred hhhhHHHHHHHHHHHH
Q 025435 160 FMSQIGCAAIGVLAFS 175 (253)
Q Consensus 160 igGHllSAliGv~~~~ 175 (253)
..||+.+.++|++...
T Consensus 161 ~~aHlgG~l~G~~~~~ 176 (180)
T d3b45a1 161 NGAHIAGLAVGLAMAF 176 (180)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555555555443
No 2
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=8.88 E-value=2.2e+02 Score=18.27 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=20.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 99 NPSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 99 ~~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
.|++.|......-+.+|+++++.+...
T Consensus 17 KP~~~Ef~~ia~v~~iG~~i~G~IGf~ 43 (56)
T d1rh5b_ 17 KPTKDEYLAVAKVTALGISLLGIIGYI 43 (56)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888877653
No 3
>d1ml8a_ d.227.1.2 (A:) Hypothetical protein in CRP region {Escherichia coli [TaxId: 562]}
Probab=5.89 E-value=2.7e+02 Score=18.98 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=21.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
+++.|.+.+.+|++.++.+...+...
T Consensus 34 p~P~elllaal~~C~~~~~~~~a~~~ 59 (134)
T d1ml8a_ 34 PSPMEMVLMAAGGCSAIDVVSILQKG 59 (134)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46699999999999999998776643
No 4
>d1xaka_ b.1.24.1 (A:) Accessory protein X4 (ORF8, ORF7a) {SARS coronavirus [TaxId: 227859]}
Probab=5.37 E-value=71 Score=21.05 Aligned_cols=15 Identities=40% Similarity=0.516 Sum_probs=11.5
Q ss_pred hccCCCCCCCCCccc
Q 025435 31 ISKLPDHPLSGNKRS 45 (253)
Q Consensus 31 ~~~~~~~~~~~~~~~ 45 (253)
-..-|-|||+.||-.
T Consensus 27 egnspfhpladnkfa 41 (68)
T d1xaka_ 27 EGNSPFHPLADNKFA 41 (68)
T ss_dssp EESSCCCEETTTEEE
T ss_pred cCCCCCccccCCcEE
Confidence 345689999999854
No 5
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=5.36 E-value=3e+02 Score=18.85 Aligned_cols=25 Identities=8% Similarity=0.234 Sum_probs=20.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQ 124 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~ 124 (253)
++..|.+.+.+|++.++.+...+..
T Consensus 42 ~~P~elllaala~C~~~~~~~~a~~ 66 (144)
T d1vlaa_ 42 PRPLELVLTGLMGCTGMDVVSILRK 66 (144)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3669999999999999888777653
No 6
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=5.00 E-value=3e+02 Score=18.80 Aligned_cols=26 Identities=8% Similarity=-0.019 Sum_probs=22.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
++..|.+.+.+|++.++.+.....+.
T Consensus 40 ~~P~elllaala~C~~~~~~~~a~~~ 65 (139)
T d2onfa1 40 LYPETLFPSVLASCLLTTFLEFKDRM 65 (139)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36699999999999999998777653
No 7
>d1ukka_ d.227.1.1 (A:) Hypothetical protein MPN625 {Thermus thermophilus [TaxId: 274]}
Probab=4.90 E-value=3.1e+02 Score=18.92 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
++..|.+.+.+|++.++.+...+.+.
T Consensus 43 p~P~elllaala~C~~~~~~~~a~~~ 68 (141)
T d1ukka_ 43 TNPEELIAAAHAGCFSMALAASLERE 68 (141)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46699999999999999887776653
No 8
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=4.77 E-value=3.2e+02 Score=18.47 Aligned_cols=26 Identities=8% Similarity=-0.134 Sum_probs=21.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
++..|.+.+.++++.++.+...+.+.
T Consensus 42 ~~P~elllaAlasC~~~t~~~~a~~~ 67 (137)
T d1uspa_ 42 TNPEQLFAAGYAACFQGALGVVSRRQ 67 (137)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46699999999999998887776654
No 9
>d1n2fa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Pseudomonas aeruginosa, pa01 [TaxId: 287]}
Probab=4.67 E-value=3.2e+02 Score=18.67 Aligned_cols=26 Identities=12% Similarity=-0.119 Sum_probs=21.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 100 PSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 100 ~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
++..|.+.+.+|++..+.+...+.+.
T Consensus 47 ~~P~elllaalasC~~~t~~~~a~~~ 72 (142)
T d1n2fa_ 47 TNPEQLFAAGYSACFIGAMKFVAGQR 72 (142)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46699999999999988877766543
No 10
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio cholerae [TaxId: 666]}
Probab=4.67 E-value=4.3e+02 Score=18.52 Aligned_cols=28 Identities=7% Similarity=0.086 Sum_probs=23.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 025435 98 SNPSLSDILWPSAGAFAAMAILGKMDQI 125 (253)
Q Consensus 98 ~~~~~~d~l~a~lGaflgI~il~~l~~~ 125 (253)
..++..|.+.+.++++..+.+...+.+.
T Consensus 55 ~~~nPeeLllaAlasC~~~t~~~~a~~~ 82 (155)
T d2d7va1 55 ANVDPEEAFVAALSSCHMLVFLSIAAKQ 82 (155)
T ss_dssp TSBCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457799999999999999998887653
Done!