Query 025437
Match_columns 253
No_of_seqs 128 out of 441
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025437.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025437hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5040 BMH1 14-3-3 family pro 100.0 2.5E-95 5E-100 615.5 17.7 239 1-239 1-239 (268)
2 smart00101 14_3_3 14-3-3 homol 100.0 3.1E-92 6.8E-97 625.4 23.7 237 5-241 1-239 (244)
3 PF00244 14-3-3: 14-3-3 protei 100.0 2.6E-87 5.6E-92 593.2 20.9 235 5-239 1-235 (236)
4 KOG0841 Multifunctional chaper 100.0 2.8E-83 6.1E-88 556.5 21.2 241 4-244 1-242 (247)
5 PF13424 TPR_12: Tetratricopep 96.3 0.0077 1.7E-07 43.2 4.6 55 146-202 21-75 (78)
6 KOG1840 Kinesin light chain [C 94.3 2.6 5.6E-05 41.8 16.2 186 7-207 201-401 (508)
7 TIGR00990 3a0801s09 mitochondr 92.3 3.1 6.7E-05 41.5 13.4 54 146-201 483-536 (615)
8 PF12862 Apc5: Anaphase-promot 90.4 1.5 3.3E-05 33.0 7.1 72 130-207 3-75 (94)
9 KOG1840 Kinesin light chain [C 87.2 33 0.00072 34.1 17.8 186 8-213 286-490 (508)
10 PF13414 TPR_11: TPR repeat; P 83.4 5.3 0.00011 27.3 6.1 47 146-201 19-66 (69)
11 PF07719 TPR_2: Tetratricopept 82.0 3.5 7.6E-05 24.1 4.1 30 8-37 4-33 (34)
12 PF13374 TPR_10: Tetratricopep 81.2 1.5 3.4E-05 26.7 2.4 24 146-169 18-41 (42)
13 PF13174 TPR_6: Tetratricopept 80.1 3.8 8.2E-05 23.7 3.8 31 7-37 2-32 (33)
14 TIGR00990 3a0801s09 mitochondr 77.3 81 0.0018 31.4 15.5 74 146-228 524-597 (615)
15 PF04781 DUF627: Protein of un 77.1 3.1 6.7E-05 33.0 3.4 41 120-160 33-74 (111)
16 PF13181 TPR_8: Tetratricopept 75.2 5.6 0.00012 23.3 3.5 30 7-36 3-32 (34)
17 PF13428 TPR_14: Tetratricopep 75.1 6.6 0.00014 25.0 4.1 30 8-37 4-33 (44)
18 PF13431 TPR_17: Tetratricopep 74.9 3.5 7.7E-05 25.2 2.6 34 152-194 1-34 (34)
19 PF12569 NARP1: NMDA receptor- 71.8 1.1E+02 0.0024 30.5 16.8 61 140-201 156-222 (517)
20 PF00515 TPR_1: Tetratricopept 71.3 11 0.00023 22.2 4.1 30 8-37 4-33 (34)
21 TIGR02917 PEP_TPR_lipo putativ 70.4 1.2E+02 0.0026 30.2 16.1 30 8-37 468-497 (899)
22 TIGR02917 PEP_TPR_lipo putativ 68.0 1.3E+02 0.0029 29.8 15.0 60 7-68 24-83 (899)
23 PF13424 TPR_12: Tetratricopep 66.9 10 0.00022 26.6 3.9 38 168-207 1-38 (78)
24 PRK10049 pgaA outer membrane p 65.6 1.7E+02 0.0037 30.2 14.0 59 8-69 86-144 (765)
25 PRK14720 transcript cleavage f 62.9 8.6 0.00019 40.8 4.0 81 111-204 94-180 (906)
26 PF05010 TACC: Transforming ac 60.3 28 0.0006 30.6 6.1 84 10-106 123-206 (207)
27 PF13432 TPR_16: Tetratricopep 60.2 48 0.001 22.1 6.4 53 10-64 2-54 (65)
28 smart00028 TPR Tetratricopepti 58.4 25 0.00054 18.3 3.9 29 8-36 4-32 (34)
29 CHL00033 ycf3 photosystem I as 58.3 82 0.0018 25.5 8.5 69 147-224 89-163 (168)
30 PF13371 TPR_9: Tetratricopept 58.0 43 0.00093 22.8 5.8 46 147-201 12-57 (73)
31 KOG4162 Predicted calmodulin-b 57.7 2.2E+02 0.0049 29.8 12.8 130 91-235 410-580 (799)
32 TIGR02521 type_IV_pilW type IV 57.5 99 0.0021 24.8 15.9 56 7-64 33-88 (234)
33 PF13414 TPR_11: TPR repeat; P 56.5 58 0.0013 21.9 7.2 45 7-52 5-49 (69)
34 PF14559 TPR_19: Tetratricopep 55.5 53 0.0012 21.9 5.9 45 147-200 8-52 (68)
35 COG0233 Frr Ribosome recycling 55.3 45 0.00098 28.8 6.4 74 35-109 104-177 (187)
36 PF08424 NRDE-2: NRDE-2, neces 54.7 85 0.0018 28.9 8.8 94 146-246 118-221 (321)
37 PRK10049 pgaA outer membrane p 54.4 2.7E+02 0.0058 28.8 13.5 59 8-68 119-177 (765)
38 KOG4759 Ribosome recycling fac 54.3 62 0.0013 29.4 7.4 71 36-109 183-253 (263)
39 PF13432 TPR_16: Tetratricopep 53.8 27 0.00059 23.4 4.1 32 5-36 31-62 (65)
40 PF01765 RRF: Ribosome recycli 53.4 58 0.0013 27.1 6.8 73 35-108 84-156 (165)
41 PF13176 TPR_7: Tetratricopept 53.4 27 0.00059 21.1 3.7 25 8-32 2-26 (36)
42 CHL00033 ycf3 photosystem I as 50.8 56 0.0012 26.5 6.3 50 146-201 51-100 (168)
43 PRK15363 pathogenicity island 50.0 64 0.0014 27.1 6.5 71 144-227 83-155 (157)
44 PRK11788 tetratricopeptide rep 47.3 2.2E+02 0.0048 25.8 14.6 23 11-33 113-135 (389)
45 cd02682 MIT_AAA_Arch MIT: doma 44.9 1.2E+02 0.0027 22.2 6.6 27 7-33 8-34 (75)
46 PF14559 TPR_19: Tetratricopep 44.6 89 0.0019 20.8 5.6 53 17-71 3-55 (68)
47 TIGR00496 frr ribosome recycli 43.9 76 0.0016 27.0 6.1 74 35-109 93-166 (176)
48 COG3947 Response regulator con 43.8 40 0.00086 31.6 4.6 107 118-234 216-335 (361)
49 PRK15179 Vi polysaccharide bio 43.6 3.7E+02 0.0079 27.9 12.0 127 6-161 87-219 (694)
50 PRK12794 flaF flagellar biosyn 42.7 32 0.0007 27.6 3.5 53 182-234 8-60 (122)
51 TIGR02795 tol_pal_ybgF tol-pal 42.7 1.1E+02 0.0023 22.3 6.3 50 147-202 56-105 (119)
52 PRK02603 photosystem I assembl 41.7 1E+02 0.0022 25.1 6.5 50 147-202 52-101 (172)
53 PF10083 DUF2321: Uncharacteri 41.7 1.7E+02 0.0038 24.6 7.7 34 23-56 83-116 (158)
54 cd02656 MIT MIT: domain contai 41.5 1.3E+02 0.0027 21.3 6.4 27 7-33 8-34 (75)
55 PF12688 TPR_5: Tetratrico pep 40.7 1.3E+02 0.0028 23.8 6.6 50 147-202 18-67 (120)
56 cd00520 RRF Ribosome recycling 40.6 89 0.0019 26.5 6.1 73 36-109 99-171 (179)
57 PRK00083 frr ribosome recyclin 40.4 1E+02 0.0022 26.4 6.5 73 36-109 103-175 (185)
58 PRK11447 cellulose synthase su 40.3 5.2E+02 0.011 28.1 14.4 55 10-66 356-410 (1157)
59 COG4499 Predicted membrane pro 40.1 58 0.0013 31.4 5.2 47 172-218 231-282 (434)
60 PF02259 FAT: FAT domain; Int 40.0 2.7E+02 0.0059 24.8 9.9 30 6-35 147-176 (352)
61 PLN03088 SGT1, suppressor of 39.5 3.2E+02 0.0069 25.4 10.5 58 7-66 38-95 (356)
62 PRK11447 cellulose synthase su 39.4 5.4E+02 0.012 28.0 14.5 62 8-70 115-176 (1157)
63 PF12895 Apc3: Anaphase-promot 37.6 50 0.0011 23.4 3.6 12 186-197 71-82 (84)
64 TIGR03302 OM_YfiO outer membra 36.7 2.6E+02 0.0056 23.5 15.1 63 6-69 34-98 (235)
65 PF13371 TPR_9: Tetratricopept 36.7 65 0.0014 21.8 4.0 29 8-36 32-60 (73)
66 PF06552 TOM20_plant: Plant sp 35.7 1.5E+02 0.0033 25.6 6.7 86 127-221 32-122 (186)
67 PRK12793 flaF flagellar biosyn 34.5 44 0.00096 26.6 3.0 52 182-234 6-58 (115)
68 PLN03088 SGT1, suppressor of 33.3 1.3E+02 0.0027 28.2 6.4 25 175-200 73-97 (356)
69 cd05804 StaR_like StaR_like; a 33.1 3.6E+02 0.0077 24.1 14.3 57 8-64 9-66 (355)
70 PF08631 SPO22: Meiosis protei 32.8 3.2E+02 0.007 24.3 8.8 89 146-235 9-100 (278)
71 PRK02603 photosystem I assembl 29.8 3E+02 0.0065 22.2 8.1 69 147-224 89-163 (172)
72 TIGR02795 tol_pal_ybgF tol-pal 28.2 2.3E+02 0.005 20.4 7.6 44 7-50 4-49 (119)
73 PF12895 Apc3: Anaphase-promot 27.7 1.1E+02 0.0023 21.7 3.9 21 10-30 63-83 (84)
74 PF10516 SHNi-TPR: SHNi-TPR; 27.7 47 0.001 21.1 1.7 37 128-167 2-38 (38)
75 COG3629 DnrI DNA-binding trans 26.5 5E+02 0.011 23.8 8.8 62 8-69 156-218 (280)
76 PF05008 V-SNARE: Vesicle tran 26.5 2.4E+02 0.0052 20.0 6.8 69 23-91 3-71 (79)
77 KOG2002 TPR-containing nuclear 25.9 8.8E+02 0.019 26.4 11.9 133 8-206 167-303 (1018)
78 smart00745 MIT Microtubule Int 25.9 2.4E+02 0.0052 19.8 6.4 27 7-33 10-36 (77)
79 COG2250 Uncharacterized conser 25.2 3.6E+02 0.0078 21.6 9.4 103 6-109 14-129 (132)
80 PF08717 nsp8: nsp8 replicase; 24.9 76 0.0016 27.6 3.0 38 145-202 14-51 (199)
81 PF08899 DUF1844: Domain of un 24.8 1.3E+02 0.0029 22.0 3.9 29 21-51 40-68 (74)
82 cd02678 MIT_VPS4 MIT: domain c 24.3 2.7E+02 0.0058 19.8 6.1 27 7-33 8-34 (75)
83 PRK11788 tetratricopeptide rep 24.3 2.7E+02 0.0059 25.2 6.9 163 10-204 185-349 (389)
84 KOG1126 DNA-binding cell divis 23.8 1E+02 0.0022 31.6 4.0 68 124-200 483-550 (638)
85 PRK11189 lipoprotein NlpI; Pro 23.5 1.7E+02 0.0038 26.2 5.3 31 7-37 238-268 (296)
86 PHA01810 hypothetical protein 23.0 3.2E+02 0.007 20.3 5.8 42 18-60 12-54 (100)
87 COG2956 Predicted N-acetylgluc 22.7 1.4E+02 0.003 28.5 4.4 47 9-55 218-264 (389)
88 PF03755 YicC_N: YicC-like fam 22.6 1.8E+02 0.004 23.9 4.9 62 148-209 82-147 (159)
89 PRK14574 hmsH outer membrane p 22.6 9.4E+02 0.02 25.5 15.1 45 186-230 340-398 (822)
90 cd05804 StaR_like StaR_like; a 22.4 5.6E+02 0.012 22.8 11.2 34 4-37 42-75 (355)
91 PF14689 SPOB_a: Sensor_kinase 21.9 87 0.0019 21.7 2.4 20 14-33 32-51 (62)
92 PHA02103 hypothetical protein 21.9 26 0.00056 27.8 -0.4 14 126-139 78-91 (135)
93 TIGR02552 LcrH_SycD type III s 21.8 3.5E+02 0.0076 20.3 8.9 44 6-50 18-61 (135)
94 COG3063 PilF Tfp pilus assembl 21.8 1.7E+02 0.0037 26.5 4.7 47 146-201 85-131 (250)
95 PRK15326 type III secretion sy 21.3 1.2E+02 0.0026 22.7 3.1 35 146-182 20-58 (80)
96 PRK15174 Vi polysaccharide exp 21.3 8.7E+02 0.019 24.6 15.0 31 8-38 113-143 (656)
97 KOG3089 Predicted DEAD-box-con 21.0 3.3E+02 0.0072 24.5 6.3 80 19-107 79-161 (271)
98 KOG3313 Molecular chaperone Pr 20.9 80 0.0017 27.1 2.3 57 162-231 104-160 (187)
99 PRK15331 chaperone protein Sic 20.2 3.9E+02 0.0085 22.6 6.4 70 146-230 87-156 (165)
100 cd02683 MIT_1 MIT: domain cont 20.1 2.9E+02 0.0062 20.1 4.9 28 6-33 7-34 (77)
101 PF00901 Orbi_VP5: Orbivirus o 20.0 8.4E+02 0.018 24.4 9.3 70 21-91 121-193 (508)
No 1
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-95 Score=615.48 Aligned_cols=239 Identities=75% Similarity=1.147 Sum_probs=234.4
Q ss_pred CcccHhhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHH
Q 025437 1 MEKEREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNV 80 (253)
Q Consensus 1 m~~~re~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~ 80 (253)
|+-.|++.+|+|||++||+||++|++-||.++..+.+|+.+|||||||||||+||.||+|||++++++||++.+++..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHH
Q 025437 81 KRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAA 160 (253)
Q Consensus 81 ~~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 160 (253)
.+|++|+++|+.||..||++|+++|+++|||.+++.|++|||+|||||||||+|||..|+.+.++.+.+.++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhccCCCCC
Q 025437 161 ASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEE 239 (253)
Q Consensus 161 ~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~ 239 (253)
...|||||||||||+||||||||||++++++||.+||+|||+||++||+|+|++|+|||+||||||||||+||++.+..
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTSd~e~s 239 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTSDAEYS 239 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeecccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986653
No 2
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=3.1e-92 Score=625.38 Aligned_cols=237 Identities=75% Similarity=1.144 Sum_probs=229.1
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHH
Q 025437 5 REHHVYLARLAEQAERYDEMVEAMKKVAKL-D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKR 82 (253)
Q Consensus 5 re~~~~~Aklaeq~ery~Dm~~~mk~~~~~-~-~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~ 82 (253)
|++++|+|||++|||||+||+.+||++++. + .+||.||||||||||||+||++|+|||+|+++++++..+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999877788788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 025437 83 IKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (253)
Q Consensus 83 i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 162 (253)
+++||++|++||..+|++||+|||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|++
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhccCCCCCCC
Q 025437 163 ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 241 (253)
Q Consensus 163 ~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~~~ 241 (253)
+||||||+||||+||||||||||+|++++||++|++|||+|++++|+++|++|+|+|+|||||||||++|+++.+++++
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~~~~~~~ 239 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDLQDDGA 239 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999665543
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=2.6e-87 Score=593.23 Aligned_cols=235 Identities=72% Similarity=1.118 Sum_probs=223.6
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHH
Q 025437 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIK 84 (253)
Q Consensus 5 re~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 84 (253)
|++++|+|||++|||||+||+++||++++.+++||.|||||||+||||+||++|+|||+|++++++++.+|++.+++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhccC
Q 025437 85 EYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASEL 164 (253)
Q Consensus 85 ~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 164 (253)
+||++|++||..+|++||++||++|+|.+++++++|||+|||||||||+|||..|+++++++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999899
Q ss_pred CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhccCCCCC
Q 025437 165 PPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEE 239 (253)
Q Consensus 165 ~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~ 239 (253)
|||||+||||+||||||||||+|++++||+||++|||+|++++|++++++|+|+++|||||||||++|+++.+++
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~ilqlLrdNl~lW~~e~~~~ 235 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTLILQLLRDNLTLWTSEEEEE 235 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHHHHHHHHHHHHHHTTT----
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHHHHHHHHHHHHhcccccccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997765
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.8e-83 Score=556.53 Aligned_cols=241 Identities=80% Similarity=1.170 Sum_probs=234.1
Q ss_pred cHhhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHH
Q 025437 4 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRI 83 (253)
Q Consensus 4 ~re~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i 83 (253)
+|+++|++|+|++|++||+||+.+||.+++.+.+||.+|||||||+|||+||++|++||+|++++||++.+|++.++..|
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCC-CchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhc
Q 025437 84 KEYRQRVEDELAKICNDILSVIDEHLIPSSTS-GESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS 162 (253)
Q Consensus 84 ~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~-~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 162 (253)
+.||++|+.||..+|++|+.++|.+|+|+++. .|++|||+|||||||||++||.+|++|+++++.++.+|+.|+++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhccCCCCCCCC
Q 025437 163 ELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGE 242 (253)
Q Consensus 163 ~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~e~~~~~~~ 242 (253)
.|+|||||||||+||||||||||++.|++||.|||+|||+||.++|++++++|+|||+||||||||||+||++.+++...
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWts~~~~~~~~ 240 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWTSDTQGDEKE 240 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhccCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877554
Q ss_pred CC
Q 025437 243 QS 244 (253)
Q Consensus 243 ~~ 244 (253)
++
T Consensus 241 ~~ 242 (247)
T KOG0841|consen 241 AE 242 (247)
T ss_pred cc
Confidence 33
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.28 E-value=0.0077 Score=43.16 Aligned_cols=55 Identities=29% Similarity=0.353 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 202 (253)
-+.|...|++|+++ .+.+++.||...-...|.+..++. +|+.++|+...++|++-
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 35799999999999 556899888888888888887777 79999999999998864
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.30 E-value=2.6 Score=41.78 Aligned_cols=186 Identities=15% Similarity=0.183 Sum_probs=122.3
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhc----C--CCCC-HHHHHHHHHHHhhhhhhhhHHHHHHH-hHhhhhhhhCc--
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKL----D--VELT-VEERNLVSVGYKNVIGARRASWRILS-SIEQKEEAKGN-- 76 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~----~--~~Ls-~eERnLlsvayKn~i~~~R~s~R~l~-~~e~~~~~~~~-- 76 (253)
.+.++|.+..+.|+|+.++...++.++. . ..+- ..-.+-|++.|-+. +..+.|..++. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~-~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL-GKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 3456888888889999999999998754 1 1222 22344466666543 44566666664 34444444443
Q ss_pred hhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHH
Q 025437 77 EQNVKRIKE-----YRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLK 151 (253)
Q Consensus 77 ~~~~~~i~~-----yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 151 (253)
+.....+.+ |+.-=-.|-...|..+++|..+. +.+..++...- +.++..-..-..-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~--~~~~~~~v~~~-----------l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL--LGASHPEVAAQ-----------LSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh--hccChHHHHHH-----------HHHHHHHHHHhcchhHHHH
Confidence 222233322 33334467888999999999983 33333332221 1222211111222568999
Q ss_pred HHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025437 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAEL 207 (253)
Q Consensus 152 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~l 207 (253)
.|+.|+.+....+.+.||.-=|+.-|+++.|+- +|..++|.++.++|+..+-+..
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~ 401 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELL 401 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcc
Confidence 999999999888999999999999999999887 7999999999999988775443
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.27 E-value=3.1 Score=41.49 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 201 (253)
.+.|...|++|+.+... .++.++..++ .++.+..+|.-.|+.++|..+.++|+.
T Consensus 483 ~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 483 FDEAIEKFDTAIELEKE-TKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHhcCCc-cccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 35688888888876532 3333433333 345555566666888888877776653
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=90.40 E-value=1.5 Score=32.99 Aligned_cols=72 Identities=21% Similarity=0.184 Sum_probs=51.2
Q ss_pred ccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhh-hhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025437 130 YRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLA-LNFSVFYYEILNSPERACHLAKQAFDEAIAEL 207 (253)
Q Consensus 130 yRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~-LN~SVF~yei~~~~~~A~~iak~afd~Ai~~l 207 (253)
.+|+--+..++ -..|.+...+.++.+.....+.++..+..+ ||.+.+++. +|++++|+...++|++-|-..-
T Consensus 3 l~~~~~~~~~d-----y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 3 LRYLNALRSGD-----YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHcCC-----HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHC
Confidence 34444444443 346888888888998777776654455544 788887776 6999999999999988886553
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=87.23 E-value=33 Score=34.09 Aligned_cols=186 Identities=15% Similarity=0.128 Sum_probs=112.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCCCHHHHHHHHHH---------HhhhhhhhhHHHHHHHhHhhhhhhh
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLD----VELTVEERNLVSVG---------YKNVIGARRASWRILSSIEQKEEAK 74 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~----~~Ls~eERnLlsva---------yKn~i~~~R~s~R~l~~~e~~~~~~ 74 (253)
+.-+|.+.-..|+|+++-.+++.+++.- ....++=-..|+.. |-..+.=.+.+.+++. .... .
T Consensus 286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~---~~~g-~ 361 (508)
T KOG1840|consen 286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL---DAPG-E 361 (508)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH---hhcc-c
Confidence 4567888888899999999998887541 22333322222221 3334444444444443 1111 1
Q ss_pred Cc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHH
Q 025437 75 GN------EQNVKRIKEYRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADH 148 (253)
Q Consensus 75 ~~------~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~ 148 (253)
.+ ..+...+ -++.-=-+|=..+-..+|.+.-... ...+..--.+++.|-.+|+|-. -...
T Consensus 362 ~~~~~a~~~~nl~~l-~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~~~~l~~la~~~~~~k-----------~~~~ 427 (508)
T KOG1840|consen 362 DNVNLAKIYANLAEL-YLKMGKYKEAEELYKKAIQILRELL--GKKDYGVGKPLNQLAEAYEELK-----------KYEE 427 (508)
T ss_pred cchHHHHHHHHHHHH-HHHhcchhHHHHHHHHHHHHHHhcc--cCcChhhhHHHHHHHHHHHHhc-----------ccch
Confidence 11 0011111 0111112444555666666665443 1223344567777766665321 1346
Q ss_pred HHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCcc
Q 025437 149 SLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEE 213 (253)
Q Consensus 149 a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee 213 (253)
|.+.|.+|..+. ....|.||--++..+|.++- |+-+|+.++|++++..+..-=-..+++.+.+
T Consensus 428 a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~ 490 (508)
T KOG1840|consen 428 AEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLNAREQRLGTASPT 490 (508)
T ss_pred HHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 889999999999 77999999999999999985 5778999999999998876555556655543
No 10
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=83.42 E-value=5.3 Score=27.28 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhC-ChHHHHHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILN-SPERACHLAKQAFD 201 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~-~~~~A~~iak~afd 201 (253)
-+.|...|++|+++ +|-.-.+..|.++-|+. +| ++++|+...++|+.
T Consensus 19 ~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHH
Confidence 35799999999976 34445578888888776 57 79999999888875
No 11
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.00 E-value=3.5 Score=24.05 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
+..++.+..+.|+|+++++++++.+..+|.
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999987653
No 12
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.24 E-value=1.5 Score=26.70 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCc
Q 025437 146 ADHSLKAYEAATAAAASELPPTHP 169 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~p 169 (253)
.+.|...|++|+.+.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 357999999999999888899998
No 13
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=80.12 E-value=3.8 Score=23.66 Aligned_cols=31 Identities=26% Similarity=0.261 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
-+..+|.+..+.|++++++..+++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567899999999999999999999987663
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=77.31 E-value=81 Score=31.42 Aligned_cols=74 Identities=16% Similarity=0.152 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLL 225 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLL 225 (253)
.+.|.+.|++|+. +.|.++. ..++.+-.++. .|+.++|+....+|..-+-+.-+-..--+|.+++.+-..+
T Consensus 524 ~~eA~~~~~kAl~-----l~p~~~~---a~~~la~~~~~-~g~~~eAi~~~e~A~~l~~~~~e~~~a~~~~~a~~~~~~~ 594 (615)
T TIGR00990 524 FIEAENLCEKALI-----IDPECDI---AVATMAQLLLQ-QGDVDEALKLFERAAELARTEGELVQAISYAEATRTQIQV 594 (615)
T ss_pred HHHHHHHHHHHHh-----cCCCcHH---HHHHHHHHHHH-ccCHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777664 3555543 22334444444 7999999998888876654322222223466666664444
Q ss_pred Hhh
Q 025437 226 RDN 228 (253)
Q Consensus 226 rdN 228 (253)
+.+
T Consensus 595 ~~~ 597 (615)
T TIGR00990 595 QED 597 (615)
T ss_pred HHH
Confidence 443
No 15
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.14 E-value=3.1 Score=33.02 Aligned_cols=41 Identities=12% Similarity=0.122 Sum_probs=33.9
Q ss_pred hhhheeccccccccccccCcc-chHHHHHHHHHHHHHHHHHH
Q 025437 120 VFYYKMKGDYYRYLAEFKGAD-DRKEAADHSLKAYEAATAAA 160 (253)
Q Consensus 120 vfy~KmkgDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a 160 (253)
.|-+...|+.|..+|....+. -+..+.-.|.+||.+|..++
T Consensus 33 ~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls 74 (111)
T PF04781_consen 33 WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS 74 (111)
T ss_pred HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC
Confidence 488899999999999987654 46778889999999998654
No 16
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.15 E-value=5.6 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.372 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~ 36 (253)
-+..++++..+.|+|+.++.++++.++.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 356789999999999999999999987655
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=75.06 E-value=6.6 Score=24.95 Aligned_cols=30 Identities=23% Similarity=0.290 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
...+|+...+.|++++++..++++++..|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999987765
No 18
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=74.91 E-value=3.5 Score=25.16 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=23.8
Q ss_pred HHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHH
Q 025437 152 AYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACH 194 (253)
Q Consensus 152 aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~ 194 (253)
+|++|+++ .|.| -....|++++|+. .|+.++|++
T Consensus 1 ~y~kAie~-----~P~n---~~a~~nla~~~~~-~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL-----NPNN---AEAYNNLANLYLN-QGDYEEAIA 34 (34)
T ss_pred ChHHHHHH-----CCCC---HHHHHHHHHHHHH-CcCHHhhcC
Confidence 46777654 3444 4557889998886 699999863
No 19
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=71.84 E-value=1.1e+02 Score=30.46 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=45.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHhccCC------CCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025437 140 DDRKEAADHSLKAYEAATAAAASELP------PTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (253)
Q Consensus 140 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 201 (253)
..+..++..-...|...++... .++ +..|.-+-.++.|-.-+|+.+|+.++|++...+|++
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ 222 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE 222 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4556677776777766655432 233 235888888999999999999999999999887754
No 20
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.27 E-value=11 Score=22.16 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
+..++.+..+.|+|++++.+.++.++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788889999999999999999988764
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=70.43 E-value=1.2e+02 Score=30.18 Aligned_cols=30 Identities=17% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
...++.+..+.|+|++++.++.++++.+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 445666666667777777777666655443
No 22
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.97 E-value=1.3e+02 Score=29.81 Aligned_cols=60 Identities=20% Similarity=0.194 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIE 68 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e 68 (253)
.++..|+....-|+|++++..+++.+...|+ +.+=+.++..+|-. .+....|...+....
T Consensus 24 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 83 (899)
T TIGR02917 24 SLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLA-LGDYAAAEKELRKAL 83 (899)
T ss_pred HHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4677888998999999999999999987766 67778888888766 477777777775543
No 23
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=66.91 E-value=10 Score=26.58 Aligned_cols=38 Identities=26% Similarity=0.286 Sum_probs=30.5
Q ss_pred CcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhh
Q 025437 168 HPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAEL 207 (253)
Q Consensus 168 ~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~l 207 (253)
||.......|.+..|++ +|+.++|+...++|++- ...+
T Consensus 1 H~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~-~~~~ 38 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRE-LGRYDEALDYYEKALDI-EEQL 38 (78)
T ss_dssp -HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-HHHT
T ss_pred CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHH-HHHH
Confidence 78888889999998886 79999999999999887 4443
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=65.65 E-value=1.7e+02 Score=30.25 Aligned_cols=59 Identities=17% Similarity=0.129 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhh
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQ 69 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 69 (253)
...+|.+.-..|++++++..+++++...|+-.. ...+..++.. .+....|...+.....
T Consensus 86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~--~~~la~~l~~-~g~~~~Al~~l~~al~ 144 (765)
T PRK10049 86 QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN--LLALAYVYKR-AGRHWDELRAMTQALP 144 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence 456677777789999999999888887665555 6677777764 3667777777755433
No 25
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=62.93 E-value=8.6 Score=40.76 Aligned_cols=81 Identities=19% Similarity=0.044 Sum_probs=51.2
Q ss_pred CCCCCCchhhhhheeccccc------cccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHH
Q 025437 111 PSSTSGESTVFYYKMKGDYY------RYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYE 184 (253)
Q Consensus 111 p~~~~~eskvfy~KmkgDyy------RYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~ye 184 (253)
|.......-.||++..|||+ |.+|++-..-. -.++|..+|++++++ .|.||. +||+=.|+|.
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g---~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~a 161 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLN---ENKKLKGVWERLVKA-----DRDNPE----IVKKLATSYE 161 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcC---ChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHHH
Confidence 33333345556666667765 33344432111 235789999998855 377764 5555555555
Q ss_pred HhCChHHHHHHHHHHHHHHH
Q 025437 185 ILNSPERACHLAKQAFDEAI 204 (253)
Q Consensus 185 i~~~~~~A~~iak~afd~Ai 204 (253)
-. +.++|..++++|+.--+
T Consensus 162 e~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 162 EE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred Hh-hHHHHHHHHHHHHHHHH
Confidence 55 99999999999977644
No 26
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=60.25 E-value=28 Score=30.59 Aligned_cols=84 Identities=25% Similarity=0.326 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHH
Q 025437 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQR 89 (253)
Q Consensus 10 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~k 89 (253)
|+++|..+-.||+-|- .-++..-+.-++|..-+-..++.-+...++.+|--..--+. .-..| .-+.+
T Consensus 123 y~~~l~~~eqry~aLK----~hAeekL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~S--------Le~~L-eQK~k 189 (207)
T PF05010_consen 123 YEERLKKEEQRYQALK----AHAEEKLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQS--------LEESL-EQKTK 189 (207)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH--------HHHHH-HHHHH
Confidence 5667777777775543 33333334556777777777777777777777754210000 00111 12233
Q ss_pred HHHHHHHHHHHHHHHHh
Q 025437 90 VEDELAKICNDILSVID 106 (253)
Q Consensus 90 i~~EL~~~C~eii~lid 106 (253)
=..||..||+++|.=++
T Consensus 190 En~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 190 ENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34799999999987543
No 27
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=60.20 E-value=48 Score=22.08 Aligned_cols=53 Identities=25% Similarity=0.209 Sum_probs=36.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025437 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRIL 64 (253)
Q Consensus 10 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l 64 (253)
-+|...-+.|+|++++..+++++...|. +.+=+..+..++- ..+....|...+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~-~~g~~~~A~~~~ 54 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY-QQGRYDEALAYY 54 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH-HTT-HHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH-HcCCHHHHHHHH
Confidence 4678888999999999999999987755 5555556665554 334444444444
No 28
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=58.43 E-value=25 Score=18.31 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~ 36 (253)
+..++.+..+.++|++++.++.+.+...|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34677888889999999999998886554
No 29
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=58.34 E-value=82 Score=25.46 Aligned_cols=69 Identities=17% Similarity=0.054 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHH------HHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYY------EILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTL 220 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~y------ei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 220 (253)
+.|..+|++|+.+ .|.+ .+...|.++.++ ..+|+.+.|.....+|+.---. .-.++.+.+.++..
T Consensus 89 ~eA~~~~~~Al~~-----~~~~---~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-a~~~~p~~~~~~~~ 159 (168)
T CHL00033 89 TKALEYYFQALER-----NPFL---PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ-AIALAPGNYIEAQN 159 (168)
T ss_pred HHHHHHHHHHHHh-----CcCc---HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHH-HHHhCcccHHHHHH
Confidence 5688899999865 2333 233445555554 2478998888777777643222 22345555666655
Q ss_pred HHHH
Q 025437 221 IMQL 224 (253)
Q Consensus 221 ilqL 224 (253)
-|..
T Consensus 160 ~~~~ 163 (168)
T CHL00033 160 WLKI 163 (168)
T ss_pred HHHH
Confidence 4443
No 30
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=58.05 E-value=43 Score=22.76 Aligned_cols=46 Identities=22% Similarity=0.228 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 201 (253)
+.|..+++.++.+ +|--..+.++++.+++. +|+.++|+....++..
T Consensus 12 ~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 12 EEALEVLERALEL--------DPDDPELWLQRARCLFQ-LGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHHHHHHHHh--------CcccchhhHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence 3455555555543 55566677788888877 6999999988877773
No 31
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=57.70 E-value=2.2e+02 Score=29.83 Aligned_cols=130 Identities=19% Similarity=0.286 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheecccccccccccc-CccchHHHHHHHHHHHHHHHHHHhccCCCCCc
Q 025437 91 EDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFK-GADDRKEAADHSLKAYEAATAAAASELPPTHP 169 (253)
Q Consensus 91 ~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~-~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~p 169 (253)
-+|..++...+|++... .. ..-+--.+++-|=-|-..|=.. ..++|...-.++.++|++|.+ +.|+||
T Consensus 410 ~eegldYA~kai~~~~~----~~--~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp 478 (799)
T KOG4162|consen 410 VEEGLDYAQKAISLLGG----QR--SHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP 478 (799)
T ss_pred hhhHHHHHHHHHHHhhh----hh--hhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc
Confidence 35566666666654311 01 1111122345566665555443 456677788899999999974 668899
Q ss_pred chhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH------------------------HHHhh----ccCCc---------
Q 025437 170 IRLGLALNFSVFYYEILNSPERACHLAKQAFDE------------------------AIAEL----DSLNE--------- 212 (253)
Q Consensus 170 irLgL~LN~SVF~yei~~~~~~A~~iak~afd~------------------------Ai~~l----d~l~e--------- 212 (253)
-...+.|++|-+ .++.+.|...++.++.- |+.-+ ++-++
T Consensus 479 ---~~if~lalq~A~-~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 479 ---LVIFYLALQYAE-QRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKI 554 (799)
T ss_pred ---hHHHHHHHHHHH-HHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhh
Confidence 334555555544 68888888888877654 22111 11111
Q ss_pred ---cchhhHHHHHHHHHhhHhhhccC
Q 025437 213 ---ESYKDSTLIMQLLRDNLTLWTSD 235 (253)
Q Consensus 213 ---e~y~ds~~ilqLLrdNl~~W~~e 235 (253)
-.+.|....+.+.+.=|.+|..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~we~~ 580 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLALWEAE 580 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhh
Confidence 23667777788888888889844
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=57.50 E-value=99 Score=24.80 Aligned_cols=56 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRIL 64 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l 64 (253)
-+..++...-..|+|+.++..+.+++...|. +..-...+...|-.. +....+...+
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-~~~~~A~~~~ 88 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQL-GELEKAEDSF 88 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3456778888889999999999999876554 334444455554432 3344444444
No 33
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=56.49 E-value=58 Score=21.85 Aligned_cols=45 Identities=22% Similarity=0.312 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKN 52 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn 52 (253)
.+..++.+..+.|+|++++.++++.++.+|. +..=..-++.+|..
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 4567889999999999999999999988765 23334444444443
No 34
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=55.48 E-value=53 Score=21.92 Aligned_cols=45 Identities=18% Similarity=0.215 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~af 200 (253)
+.|...|++++.. +|-...+.++++..|+. .|+.++|..+..++.
T Consensus 8 ~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 8 DEAIELLEKALQR--------NPDNPEARLLLAQCYLK-QGQYDEAEELLERLL 52 (68)
T ss_dssp HHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4677777777644 44455566667777777 599999888776643
No 35
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=55.32 E-value=45 Score=28.84 Aligned_cols=74 Identities=20% Similarity=0.208 Sum_probs=50.5
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 35 DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 35 ~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
-|+||.|-|.=|.--.|...-.-|-|.|.+..--.. ..+...+....-++-.++.++++..+.++.+.-||..+
T Consensus 104 ~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d-~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 104 LPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDAND-KIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999988531111 01111111113356667788888888888888888754
No 36
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=54.68 E-value=85 Score=28.90 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHhccC----------CCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccch
Q 025437 146 ADHSLKAYEAATAAAASEL----------PPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESY 215 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L----------~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y 215 (253)
+......|.+++....... +.+.-..|-+.+++++|..+ .|..+.|+.+.|..++-..-.-+.+.....
T Consensus 118 v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~-aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~ 196 (321)
T PF08424_consen 118 VSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQ-AGYTERAVALWQALLEFNFFRPESLSSSSF 196 (321)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHH-CCchHHHHHHHHHHHHHHcCCccccccccH
Confidence 4566777777777654322 33356788899999999999 599999999999888876533333332221
Q ss_pred hhHHHHHHHHHhhHhhhccCCCCCCCCCCCC
Q 025437 216 KDSTLIMQLLRDNLTLWTSDLPEEGGEQSKG 246 (253)
Q Consensus 216 ~ds~~ilqLLrdNl~~W~~e~~~~~~~~~~~ 246 (253)
. ..+..+. .=|.++.+--|.+++.|
T Consensus 197 ~---~~~~~fe---~FWeS~vpRiGE~gA~G 221 (321)
T PF08424_consen 197 S---ERLESFE---EFWESEVPRIGEPGAKG 221 (321)
T ss_pred H---HHHHHHH---HHhCcCCCCCCCCCcch
Confidence 1 3444444 88999877666554443
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=54.45 E-value=2.7e+02 Score=28.83 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHh
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIE 68 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e 68 (253)
+..+|.+....|++++++..+++++...|. +.+-...+..++.. -+..-.|.+.+....
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~-~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRN-NRLSAPALGAIDDAN 177 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-CCChHHHHHHHHhCC
Confidence 677899999999999999999999988776 45555556666653 233444566665433
No 38
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=54.27 E-value=62 Score=29.43 Aligned_cols=71 Identities=21% Similarity=0.273 Sum_probs=51.3
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 36 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
|+.|.|-|.=|+...+.....+|.|+|-+..--.+...+.... .=.+-..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999999999999999998865333322221111 2245567788888888888888888754
No 39
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=53.82 E-value=27 Score=23.38 Aligned_cols=32 Identities=31% Similarity=0.420 Sum_probs=26.3
Q ss_pred HhhHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 025437 5 REHHVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (253)
Q Consensus 5 re~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~ 36 (253)
.+-+..++.+..+.|+|++++.++.+++...|
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34567889999999999999999999987765
No 40
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=53.42 E-value=58 Score=27.12 Aligned_cols=73 Identities=19% Similarity=0.170 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 025437 35 DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEH 108 (253)
Q Consensus 35 ~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~ 108 (253)
-|.+|.|-|.-+..-.|...-..|.+.|.+..--.+.-.+ .......-++-..+++++|..+-+..+.-||..
T Consensus 84 iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk-~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 156 (165)
T PF01765_consen 84 IPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKK-LKKSKEISEDDIKKLEKEIQKLTDKYIKKIDEL 156 (165)
T ss_dssp --SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhccCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3679999999999999999999999999886533221110 000001234555667777777777777777654
No 41
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=53.40 E-value=27 Score=21.11 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVA 32 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~ 32 (253)
+..+|.+..+.|+|+.++++.++..
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678999999999999999999854
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=50.78 E-value=56 Score=26.46 Aligned_cols=50 Identities=16% Similarity=0.040 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 201 (253)
.+.|...|++|+.+. |.++.......|.++.+. ..|+.++|+...++|+.
T Consensus 51 ~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 51 YAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Confidence 357888999998763 223333335566665554 47999999999888874
No 43
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=50.02 E-value=64 Score=27.08 Aligned_cols=71 Identities=15% Similarity=0.167 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccc--hhhHHHH
Q 025437 144 EAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEES--YKDSTLI 221 (253)
Q Consensus 144 ~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~--y~ds~~i 221 (253)
.--+.|.++|..|..+ .|.||- ...|.++-+.- +|+++.|+ ++|+.|+.--...++.. ...+...
T Consensus 83 g~~~~AI~aY~~A~~L-----~~ddp~---~~~~ag~c~L~-lG~~~~A~----~aF~~Ai~~~~~~~~~~~l~~~A~~~ 149 (157)
T PRK15363 83 KHWGEAIYAYGRAAQI-----KIDAPQ---APWAAAECYLA-CDNVCYAI----KALKAVVRICGEVSEHQILRQRAEKM 149 (157)
T ss_pred hhHHHHHHHHHHHHhc-----CCCCch---HHHHHHHHHHH-cCCHHHHH----HHHHHHHHHhccChhHHHHHHHHHHH
Confidence 3456788888888755 444543 24555555544 68887764 67777776654444322 3336666
Q ss_pred HHHHHh
Q 025437 222 MQLLRD 227 (253)
Q Consensus 222 lqLLrd 227 (253)
+..|.|
T Consensus 150 L~~l~~ 155 (157)
T PRK15363 150 LQQLSD 155 (157)
T ss_pred HHHhhc
Confidence 666654
No 44
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=47.26 E-value=2.2e+02 Score=25.80 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=10.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHh
Q 025437 11 LARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 11 ~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
++.+..+.|+|+.+..+++++.+
T Consensus 113 La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 113 LGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHc
Confidence 34444444555555555544443
No 45
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.90 E-value=1.2e+02 Score=22.20 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
.++-+|--+++.|||++++.+-+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 456677778888999999887777664
No 46
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=44.62 E-value=89 Score=20.78 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=38.4
Q ss_pred HhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhh
Q 025437 17 QAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKE 71 (253)
Q Consensus 17 q~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~ 71 (253)
+.|+|++++..+++++..+|. +.+=+-.|..+|-.. +..-.|-+++..+....
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQD 55 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHC
Confidence 568899999999999988777 666676777776554 66667777776655443
No 47
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=43.85 E-value=76 Score=27.00 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 35 DVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 35 ~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
-|+||.|-|.=|....|...-..|.+.|-+..--.+. .+...+....-++-.++++++|..+.++.+.-||..+
T Consensus 93 iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 93 FPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999999988888888888875311110 0000000001134555666667666666666666543
No 48
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=43.76 E-value=40 Score=31.60 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=65.3
Q ss_pred hhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhcc-CCCCC------------cchhhhhhhhHHHHHH
Q 025437 118 STVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASE-LPPTH------------PIRLGLALNFSVFYYE 184 (253)
Q Consensus 118 skvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~-L~pt~------------pirLgL~LN~SVF~ye 184 (253)
-++-.-+.+-|+.+|..++..-.... ...+.|++-+.+-+-. ||... .+++.|.---+-.|-+
T Consensus 216 Ykld~~~~k~Dv~e~es~~rqi~~in----ltide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle 291 (361)
T COG3947 216 YKLDAGLPKYDVQEYESLARQIEAIN----LTIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLE 291 (361)
T ss_pred eEEecCCccccHHHHHHHhhhhhccc----cCHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34444456778888888875433322 2233333334333221 22211 1222222222333444
Q ss_pred HhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhcc
Q 025437 185 ILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (253)
Q Consensus 185 i~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~ 234 (253)
.|.+.+|+++.+.++. +|.|+|+.++.-+.++-+++||+..=.+
T Consensus 292 -~g~~neAi~l~qr~lt-----ldpL~e~~nk~lm~~la~~gD~is~~kh 335 (361)
T COG3947 292 -AGKPNEAIQLHQRALT-----LDPLSEQDNKGLMASLATLGDEISAIKH 335 (361)
T ss_pred -cCChHHHHHHHHHHhh-----cChhhhHHHHHHHHHHHHhccchhhhhH
Confidence 6999999999999764 6889999999999999999999876443
No 49
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.56 E-value=3.7e+02 Score=27.89 Aligned_cols=127 Identities=13% Similarity=0.022 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHH
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK-NVIGARRASWRILSSIEQKEEAKGNEQNVKRIK 84 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayK-n~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 84 (253)
+-+.-+|.+..+.|||+|+...+..+.+..|+...=-.++-.+-.+ .-+..-+...+.+- +.... +..
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~--~~~------ 155 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSS--SAR------ 155 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCC--CHH------
Confidence 3456789999999999999999999999888876554444444333 22222222222211 11110 100
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHhhccCCCCCCCchhhhh---heeccccccccccccCccchHHHHHHHHHHHHHHHHH
Q 025437 85 EYRQRVEDELAK--ICNDILSVIDEHLIPSSTSGESTVFY---YKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAA 159 (253)
Q Consensus 85 ~yk~ki~~EL~~--~C~eii~lid~~Lip~~~~~eskvfy---~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 159 (253)
.....-..|.. -+.+.+.+.++.+-|.+.+++..+=| +|-.|+ .+.|..+|++|++.
T Consensus 156 -~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-----------------~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 -EILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-----------------LWRARDVLQAGLDA 217 (694)
T ss_pred -HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHh
Confidence 00111122332 37788888888776665555544433 222232 45788899999887
Q ss_pred Hh
Q 025437 160 AA 161 (253)
Q Consensus 160 a~ 161 (253)
..
T Consensus 218 ~~ 219 (694)
T PRK15179 218 IG 219 (694)
T ss_pred hC
Confidence 63
No 50
>PRK12794 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=42.68 E-value=32 Score=27.57 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=35.3
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhcc
Q 025437 182 YYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (253)
Q Consensus 182 ~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~ 234 (253)
|-++......+.++=..+|..+...|....+..-.+....++-|..|-.+|+.
T Consensus 8 Y~~~~~~~~~~Re~E~~~l~~~~~~L~~a~~~~~~~~~~~~~AL~~NrrLWt~ 60 (122)
T PRK12794 8 YARAAQPTRTPRETEYQLLAKATRQLKDAQTNGPDRFAALAEALHFNRKLWSI 60 (122)
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH
Confidence 44455555556666667777777777655443222335677999999999995
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=42.65 E-value=1.1e+02 Score=22.26 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 202 (253)
+.|...|+.++. +.|.||......++.+..++. +|+.++|+....++++.
T Consensus 56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 56 ADAAKAFLAVVK-----KYPKSPKAPDALLKLGMSLQE-LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHH-----HCCCCCcccHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Confidence 457778877764 346676555555666655554 79999999888777665
No 52
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=41.74 E-value=1e+02 Score=25.13 Aligned_cols=50 Identities=20% Similarity=0.240 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 202 (253)
+.|...|++|+.+.. .+|-..-...|.++-++. +|+.++|+...++|+..
T Consensus 52 ~~A~~~~~~al~~~~-----~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 52 AEALENYEEALKLEE-----DPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHhh-----ccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 478889999887642 222223345666666655 79999999988877663
No 53
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=41.67 E-value=1.7e+02 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.268 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhh
Q 025437 23 EMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGA 56 (253)
Q Consensus 23 Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~ 56 (253)
..++..+++++...+||.+|++.|..+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999999887754
No 54
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=41.52 E-value=1.3e+02 Score=21.33 Aligned_cols=27 Identities=19% Similarity=0.261 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
.++-.|--+++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566667888999999999888775
No 55
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=40.69 E-value=1.3e+02 Score=23.81 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 202 (253)
+.|...|++|+.. .|+ .|.|-+..++.+--+- .+|++++|+.+-++++.+
T Consensus 18 ~~Ai~~Y~~Al~~---gL~--~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 18 EEAIPLYRRALAA---GLS--GADRRRALIQLASTLR-NLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHHHHHHc---CCC--chHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHH
Confidence 5799999999752 244 4555556666655554 589999999999888764
No 56
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=40.60 E-value=89 Score=26.54 Aligned_cols=73 Identities=21% Similarity=0.254 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 36 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
|++|.|-|.=|....|...-..|.+.|.+..--.+.- +........-++-.++.+++|..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~l-Kk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKI-KKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999988888888888888888753111110 000000001234445566666666666666666543
No 57
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=40.43 E-value=1e+02 Score=26.38 Aligned_cols=73 Identities=23% Similarity=0.246 Sum_probs=44.6
Q ss_pred CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 36 VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 36 ~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.-.+ ..+.-..-++-.++.++||..+.+..+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk-~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKK-LEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988988888888888875421111000 0000001234445666667666666666666543
No 58
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=40.29 E-value=5.2e+02 Score=28.13 Aligned_cols=55 Identities=9% Similarity=-0.110 Sum_probs=35.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025437 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSS 66 (253)
Q Consensus 10 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ 66 (253)
.++.++-..|+|++++..+++++...|.-. .=...|..+|.. .+....|.+.+..
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~-~a~~~Lg~~~~~-~g~~~eA~~~y~~ 410 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDS-YAVLGLGDVAMA-RKDYAAAERYYQQ 410 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 345566678999999999999998876532 233344555532 3455555555544
No 59
>COG4499 Predicted membrane protein [Function unknown]
Probab=40.14 E-value=58 Score=31.39 Aligned_cols=47 Identities=30% Similarity=0.413 Sum_probs=39.8
Q ss_pred hhhhhhhHHHHHHHhCChHHHHHHHHHHH-----HHHHHhhccCCccchhhH
Q 025437 172 LGLALNFSVFYYEILNSPERACHLAKQAF-----DEAIAELDSLNEESYKDS 218 (253)
Q Consensus 172 LgL~LN~SVF~yei~~~~~~A~~iak~af-----d~Ai~~ld~l~ee~y~ds 218 (253)
|-+++=|++|+|-+..-.+.||.-|.+|| ++.+..|+..+.+..+.+
T Consensus 231 lvl~li~~~Y~~f~~~p~qeai~~a~~aFL~~nY~qVittLe~ydp~klPks 282 (434)
T COG4499 231 LVLLLIYFTYYYFSNQPKQEAIITANTAFLKNNYDQVITTLENYDPEKLPKS 282 (434)
T ss_pred HHHHHHHHHHHHHHcChhHHHHHHHHHHHHhccHHHHhhhcccCChhhCcHH
Confidence 44678899999999999999999999995 788999998887765553
No 60
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=40.03 E-value=2.7e+02 Score=24.78 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLD 35 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~~~ 35 (253)
.-.+..|++|-.+|+|+=+..++.++...+
T Consensus 147 ~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 147 ETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 346788999999999999999998877643
No 61
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=39.46 E-value=3.2e+02 Score=25.44 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSS 66 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~ 66 (253)
-+..+|.+..+.|+|++++..+.+++..+|.. ..=...+..+|-. .+....|.+.+..
T Consensus 38 a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~-~~a~~~lg~~~~~-lg~~~eA~~~~~~ 95 (356)
T PLN03088 38 LYADRAQANIKLGNFTEAVADANKAIELDPSL-AKAYLRKGTACMK-LEEYQTAKAALEK 95 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 34567777777888888888888888776643 3344555555543 4666666666644
No 62
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=39.43 E-value=5.4e+02 Score=28.03 Aligned_cols=62 Identities=13% Similarity=0.045 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhh
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQK 70 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~ 70 (253)
.+.+|++.-..|+|++++..+++++..+|+-..--...+.... ...+..-.|.+.+..+.+.
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~-~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVA-KLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHh-hCCccHHHHHHHHHHHHHh
Confidence 4778899999999999999999998765543211111111111 1234455566666554443
No 63
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=37.56 E-value=50 Score=23.44 Aligned_cols=12 Identities=25% Similarity=0.171 Sum_probs=5.9
Q ss_pred hCChHHHHHHHH
Q 025437 186 LNSPERACHLAK 197 (253)
Q Consensus 186 ~~~~~~A~~iak 197 (253)
+|+.++|+..-+
T Consensus 71 l~~y~eAi~~l~ 82 (84)
T PF12895_consen 71 LGKYEEAIKALE 82 (84)
T ss_dssp TT-HHHHHHHHH
T ss_pred hCCHHHHHHHHh
Confidence 555555555443
No 64
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=36.74 E-value=2.6e+02 Score=23.53 Aligned_cols=63 Identities=11% Similarity=0.034 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHhhhhhhhhHHHHHHHhHhh
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVEL--TVEERNLVSVGYKNVIGARRASWRILSSIEQ 69 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~L--s~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 69 (253)
+.+..++...-+.|+|++++..+.+++...|.- ..+-+..+..+|-.. +....|...+.....
T Consensus 34 ~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~-~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 34 EELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKS-GDYAEAIAAADRFIR 98 (235)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH
Confidence 345677777888999999999999999876643 334445555555433 455566666654433
No 65
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=36.73 E-value=65 Score=21.82 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDV 36 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~ 36 (253)
...+|.+..+.|+|++++..+.++++.+|
T Consensus 32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 32 WLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34566666677777777777777665544
No 66
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=35.69 E-value=1.5e+02 Score=25.59 Aligned_cols=86 Identities=27% Similarity=0.345 Sum_probs=48.8
Q ss_pred cccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCC--cchhhhhhhhHHHHHHHhCChHHHHH---HHHHHHH
Q 025437 127 GDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTH--PIRLGLALNFSVFYYEILNSPERACH---LAKQAFD 201 (253)
Q Consensus 127 gDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~--pirLgL~LN~SVF~yei~~~~~~A~~---iak~afd 201 (253)
|...==++-|..+.+.++.++.|..-|++|+.+- |.-| -.-||.++--=-|+ ..+..+|-. .|...|+
T Consensus 32 G~ALLELAqfk~g~es~~miedAisK~eeAL~I~----P~~hdAlw~lGnA~ts~A~l---~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 32 GGALLELAQFKQGPESKKMIEDAISKFEEALKIN----PNKHDALWCLGNAYTSLAFL---TPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----TT-HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHHHhh---cCChHHHHHHHHHHHHHHH
Confidence 3334445667777888889999999999998763 1112 23456665544443 445555544 5666677
Q ss_pred HHHHhhccCCccchhhHHHH
Q 025437 202 EAIAELDSLNEESYKDSTLI 221 (253)
Q Consensus 202 ~Ai~~ld~l~ee~y~ds~~i 221 (253)
.|... .-+.+.|+.+..+
T Consensus 105 kAv~~--~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 105 KAVDE--DPNNELYRKSLEM 122 (186)
T ss_dssp HHHHH---TT-HHHHHHHHH
T ss_pred HHHhc--CCCcHHHHHHHHH
Confidence 77644 2244668776544
No 67
>PRK12793 flaF flagellar biosynthesis regulatory protein FlaF; Reviewed
Probab=34.51 E-value=44 Score=26.57 Aligned_cols=52 Identities=27% Similarity=0.357 Sum_probs=40.7
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhhhcc
Q 025437 182 YYEILNSPE-RACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTS 234 (253)
Q Consensus 182 ~yei~~~~~-~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~W~~ 234 (253)
|-+++.+.. .+.++=.++|..+...|....+..- ++...++-|..|-.+|+.
T Consensus 6 Ya~~~~~s~~~~R~~E~~~l~r~~~~L~~a~~~~~-~~~~~~eAL~~NrrLWt~ 58 (115)
T PRK12793 6 YAEVMEDSVASARERERQAFDRSIDLLEAARAKGA-YSREAIEALYFTRRLWTV 58 (115)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHH
Confidence 566777666 7778888899999888876655433 677888999999999995
No 68
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=33.26 E-value=1.3e+02 Score=28.17 Aligned_cols=25 Identities=12% Similarity=-0.021 Sum_probs=12.2
Q ss_pred hhhhHHHHHHHhCChHHHHHHHHHHH
Q 025437 175 ALNFSVFYYEILNSPERACHLAKQAF 200 (253)
Q Consensus 175 ~LN~SVF~yei~~~~~~A~~iak~af 200 (253)
.++.++.|+. +|+.+.|+...++|+
T Consensus 73 ~~~lg~~~~~-lg~~~eA~~~~~~al 97 (356)
T PLN03088 73 YLRKGTACMK-LEEYQTAKAALEKGA 97 (356)
T ss_pred HHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence 3344444433 466666665444443
No 69
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=33.10 E-value=3.6e+02 Score=24.10 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhhhhhhhhHHHHHH
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKL-DVELTVEERNLVSVGYKNVIGARRASWRIL 64 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~-~~~Ls~eERnLlsvayKn~i~~~R~s~R~l 64 (253)
+.++|.+....|++++......++... ...+|.-|+..+....-...+..-.+...+
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~ 66 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALL 66 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 456777777778888876777666654 345666666554333223333334444444
No 70
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=32.77 E-value=3.2e+02 Score=24.35 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhh-hhhhhHHHHHHHhCChHHHHHHHHHHHHHHH--HhhccCCccchhhHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLG-LALNFSVFYYEILNSPERACHLAKQAFDEAI--AELDSLNEESYKDSTLIM 222 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLg-L~LN~SVF~yei~~~~~~A~~iak~afd~Ai--~~ld~l~ee~y~ds~~il 222 (253)
.+.|.-.|.+|-.... .++|....+|+ +.+|+.+-.+.--++.+.|+..-++|++-.- ..++..+.+...==..|+
T Consensus 9 ~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL 87 (278)
T PF08631_consen 9 LDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSIL 87 (278)
T ss_pred HHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHH
Confidence 4578889999988875 68999999998 7889999999964499999999999988632 234444433322245566
Q ss_pred HHHHhhHhhhccC
Q 025437 223 QLLRDNLTLWTSD 235 (253)
Q Consensus 223 qLLrdNl~~W~~e 235 (253)
++|-...-.|...
T Consensus 88 ~~La~~~l~~~~~ 100 (278)
T PF08631_consen 88 RLLANAYLEWDTY 100 (278)
T ss_pred HHHHHHHHcCCCh
Confidence 7776666666543
No 71
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=29.76 E-value=3e+02 Score=22.23 Aligned_cols=69 Identities=20% Similarity=0.280 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHH------hCChHHHHHHHHHHHHHHHHhhccCCccchhhHHH
Q 025437 147 DHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEI------LNSPERACHLAKQAFDEAIAELDSLNEESYKDSTL 220 (253)
Q Consensus 147 ~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei------~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ 220 (253)
+.|..+|++|+.+. |.++ ....+.+..++.. .++.+.|....++|.+-.-..+ .++.+.|.++..
T Consensus 89 ~~A~~~~~~al~~~-----p~~~---~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~-~~~p~~~~~~~~ 159 (172)
T PRK02603 89 DKALEYYHQALELN-----PKQP---SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAI-RLAPNNYIEAQN 159 (172)
T ss_pred HHHHHHHHHHHHhC-----cccH---HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHH-hhCchhHHHHHH
Confidence 56888899888652 3332 2233444444442 2345555554444433222222 234445655544
Q ss_pred HHHH
Q 025437 221 IMQL 224 (253)
Q Consensus 221 ilqL 224 (253)
.+..
T Consensus 160 ~~~~ 163 (172)
T PRK02603 160 WLKT 163 (172)
T ss_pred HHHh
Confidence 4433
No 72
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=28.21 E-value=2.3e+02 Score=20.39 Aligned_cols=44 Identities=16% Similarity=0.136 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHH
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDV--ELTVEERNLVSVGY 50 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~--~Ls~eERnLlsvay 50 (253)
.+.-.+....+.|+|++++..+.+++..+| .+..+-+..+..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344556666667777777777777776544 34444444555554
No 73
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=27.69 E-value=1.1e+02 Score=21.68 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHH
Q 025437 10 YLARLAEQAERYDEMVEAMKK 30 (253)
Q Consensus 10 ~~Aklaeq~ery~Dm~~~mk~ 30 (253)
.+|+...+.|+|+++++.+.+
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhc
Confidence 346666666666666666554
No 74
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=27.68 E-value=47 Score=21.06 Aligned_cols=37 Identities=27% Similarity=0.488 Sum_probs=26.3
Q ss_pred ccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCC
Q 025437 128 DYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPT 167 (253)
Q Consensus 128 DyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt 167 (253)
|.|--++|+.-..++. +.|..=|++|+++-++.+||.
T Consensus 2 dv~~~Lgeisle~e~f---~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 2 DVYDLLGEISLENENF---EQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred cHHHHHHHHHHHhccH---HHHHHHHHHHHHHHHHhcCCC
Confidence 4555567776555543 478889999999987777763
No 75
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=26.47 E-value=5e+02 Score=23.84 Aligned_cols=62 Identities=18% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh-hhhhhhhHHHHHHHhHhh
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYK-NVIGARRASWRILSSIEQ 69 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayK-n~i~~~R~s~R~l~~~e~ 69 (253)
+..+|.....++|++..+..++++++..|-=.+.=+.|+-..++ .-.+.-..+++-++....
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~ 218 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLA 218 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh
Confidence 45677778888999999999999998766555555666666665 334444455555554433
No 76
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=26.47 E-value=2.4e+02 Score=19.98 Aligned_cols=69 Identities=10% Similarity=0.130 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHH
Q 025437 23 EMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVE 91 (253)
Q Consensus 23 Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~ 91 (253)
....-+...+..-+.++.++|+-...-....+..-..-+..+..--+..+..........++.||..+.
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~ 71 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELK 71 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 334444444443345555788777777777777766655554322222111111234455666665543
No 77
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=25.94 E-value=8.8e+02 Score=26.38 Aligned_cols=133 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhh--hHHHHHHHhHhhhhhhhCchhHHHHHHH
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGAR--RASWRILSSIEQKEEAKGNEQNVKRIKE 85 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~--R~s~R~l~~~e~~~~~~~~~~~~~~i~~ 85 (253)
|+-.|+|+-+=++|--++.+.+.+.-.+|..-.+=|-...-+|=+.-.+. +.||--...+.+ ..-...-.+-.
T Consensus 167 LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp-----~~v~alv~L~~ 241 (1018)
T KOG2002|consen 167 LLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDP-----TCVSALVALGE 241 (1018)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcCh-----hhHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhc--c
Q 025437 86 YRQRVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAAS--E 163 (253)
Q Consensus 86 yk~ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~--~ 163 (253)
++..-.+. ++|+.|+.+... .
T Consensus 242 ~~l~~~d~---------------------------------------------------------~s~~~~~~ll~~ay~ 264 (1018)
T KOG2002|consen 242 VDLNFNDS---------------------------------------------------------DSYKKGVQLLQRAYK 264 (1018)
T ss_pred HHHHccch---------------------------------------------------------HHHHHHHHHHHHHHh
Q ss_pred CCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHh
Q 025437 164 LPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAE 206 (253)
Q Consensus 164 L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ 206 (253)
..|.||.-|...-||=+|- |+.+.++.+|-.||..+...
T Consensus 265 ~n~~nP~~l~~LAn~fyfK----~dy~~v~~la~~ai~~t~~~ 303 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFK----KDYERVWHLAEHAIKNTENK 303 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhc----ccHHHHHHHHHHHHHhhhhh
No 78
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.86 E-value=2.4e+02 Score=19.81 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
+++..|--.++.|+|++++.+.+..++
T Consensus 10 ~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 10 ELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455666677788999998888888774
No 79
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=25.17 E-value=3.6e+02 Score=21.58 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHhc----------C-CCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhh-h
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAKL----------D-VELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEE-A 73 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~~----------~-~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~-~ 73 (253)
...+-.|+..-..|.|+-++..-.|.++. + ++-|..=+.||....+. +.....-++.+..++..-- .
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 34456677777889999988877776532 3 78888889999988874 4433333333333332211 1
Q ss_pred hCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 025437 74 KGNEQ-NVKRIKEYRQRVEDELAKICNDILSVIDEHL 109 (253)
Q Consensus 74 ~~~~~-~~~~i~~yk~ki~~EL~~~C~eii~lid~~L 109 (253)
.-.+. .......|-+..-+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 11111 1113466778888889999999999988654
No 80
>PF08717 nsp8: nsp8 replicase; InterPro: IPR014829 Viral Nsp8 (non structural protein 8) forms a hexadecameric supercomplex with Nsp7 that adopts a hollow cylinder-like structure []. The dimensions of the central channel and positive electrostatic properties of the cylinder imply that it confers processivity on RNA-dependent RNA polymerase []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 2AHM_F 3UB0_D.
Probab=24.94 E-value=76 Score=27.56 Aligned_cols=38 Identities=34% Similarity=0.498 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHH
Q 025437 145 AADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDE 202 (253)
Q Consensus 145 ~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~ 202 (253)
.-+.|.++|++|..-. -+| ..++...+|+.|||..||.
T Consensus 14 ~Ye~A~~~Ye~av~ng---~~~-----------------q~~Kql~KA~NIAKse~dr 51 (199)
T PF08717_consen 14 AYETARQAYEEAVANG---SSP-----------------QELKQLKKAMNIAKSEFDR 51 (199)
T ss_dssp HHHHHHHHHHHHHHCT-----H-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC---CCH-----------------HHHHHHHHHHhHHHHHHhH
Confidence 3568999999997521 111 2357788999999999984
No 81
>PF08899 DUF1844: Domain of unknown function (DUF1844); InterPro: IPR014995 This group of proteins are functionally uncharacterised.
Probab=24.83 E-value=1.3e+02 Score=22.04 Aligned_cols=29 Identities=17% Similarity=0.229 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Q 025437 21 YDEMVEAMKKVAKLDVELTVEERNLVSVGYK 51 (253)
Q Consensus 21 y~Dm~~~mk~~~~~~~~Ls~eERnLlsvayK 51 (253)
.=||...++. .+.+.|+.+|+.+|..+.-
T Consensus 40 tID~L~mL~e--KTkGNL~~~E~~lL~~~L~ 68 (74)
T PF08899_consen 40 TIDLLAMLQE--KTKGNLDEEEERLLESALY 68 (74)
T ss_pred HHHHHHHHHH--HHccCCCHHHHHHHHHHHH
Confidence 3355555555 3579999999999877643
No 82
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=24.33 E-value=2.7e+02 Score=19.81 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
.++-.|--.++.|+|++++.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456667778888999999999988885
No 83
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=24.29 E-value=2.7e+02 Score=25.18 Aligned_cols=163 Identities=15% Similarity=0.112 Sum_probs=85.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHH-
Q 025437 10 YLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQ- 88 (253)
Q Consensus 10 ~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~- 88 (253)
.++.+..+.|++++++.+++++++..|.. .+=...+..+|-. .+....|...+..+....+.........+..-|..
T Consensus 185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 262 (389)
T PRK11788 185 ELAQQALARGDLDAARALLKKALAADPQC-VRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL 262 (389)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhHCcCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence 46677778899999999999998876653 3445556566544 45666677776654433211100111122222221
Q ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCCchhhhhheeccccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 025437 89 RVEDELAKICNDILSVIDEHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTH 168 (253)
Q Consensus 89 ki~~EL~~~C~eii~lid~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~ 168 (253)
.=.++-....+.++.+ -|.. .++ -..|+.+. ..|. .+.|...|++++.. .|.+
T Consensus 263 g~~~~A~~~l~~~~~~-----~p~~-----~~~--~~la~~~~-----~~g~-----~~~A~~~l~~~l~~-----~P~~ 315 (389)
T PRK11788 263 GDEAEGLEFLRRALEE-----YPGA-----DLL--LALAQLLE-----EQEG-----PEAAQALLREQLRR-----HPSL 315 (389)
T ss_pred CCHHHHHHHHHHHHHh-----CCCc-----hHH--HHHHHHHH-----HhCC-----HHHHHHHHHHHHHh-----CcCH
Confidence 1122233344444433 2432 222 12233321 1111 34688888888754 3444
Q ss_pred cchhhhhhhhHHHHHHH-hCChHHHHHHHHHHHHHHH
Q 025437 169 PIRLGLALNFSVFYYEI-LNSPERACHLAKQAFDEAI 204 (253)
Q Consensus 169 pirLgL~LN~SVF~yei-~~~~~~A~~iak~afd~Ai 204 (253)
+ ++-.-+..++..- .|+..+|+.+.++.+...+
T Consensus 316 ~---~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 316 R---GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred H---HHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 3 2222233333221 4588899999999888776
No 84
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.79 E-value=1e+02 Score=31.60 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=43.2
Q ss_pred eeccccccccccccCccchHHHHHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHH
Q 025437 124 KMKGDYYRYLAEFKGADDRKEAADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAF 200 (253)
Q Consensus 124 KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~af 200 (253)
++-++.||-+....----|++--+.|+-.|++|++ +||.-.-++-=...++.. +|..++|+.+-.+|+
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--------INP~nsvi~~~~g~~~~~-~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--------INPSNSVILCHIGRIQHQ-LKRKDKALQLYEKAI 550 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--------CCccchhHHhhhhHHHHH-hhhhhHHHHHHHHHH
Confidence 45566666554433222233334566667777664 356666666666777766 799999999988884
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=23.45 E-value=1.7e+02 Score=26.22 Aligned_cols=31 Identities=23% Similarity=0.163 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 7 HHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 7 ~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
-..+++++..+.|+|++++.+.++++..+|.
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 4678899999999999999999999987754
No 86
>PHA01810 hypothetical protein
Probab=22.99 E-value=3.2e+02 Score=20.27 Aligned_cols=42 Identities=24% Similarity=0.364 Sum_probs=28.2
Q ss_pred hcCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHhhhhhhhhHH
Q 025437 18 AERYDEMVEAMKKVAKLDVELTVE-ERNLVSVGYKNVIGARRAS 60 (253)
Q Consensus 18 ~ery~Dm~~~mk~~~~~~~~Ls~e-ERnLlsvayKn~i~~~R~s 60 (253)
..-|.+|.+.+.++++-+|..|.+ -.||.|.+ ..++-.+-+|
T Consensus 12 gqaytemlqlfnkliqwnpaytfdnainlvsac-qqlllnynss 54 (100)
T PHA01810 12 GQAYTEMLQLFNKLIQWNPAYTFDNAINLVSAC-QQLLLNYNSS 54 (100)
T ss_pred hHHHHHHHHHHHHHHhcCcccccchHHHHHHHH-HHHHHhcchH
Confidence 445899999999999999998855 45555543 3333333333
No 87
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=22.67 E-value=1.4e+02 Score=28.49 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=42.4
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhhhh
Q 025437 9 VYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGYKNVIG 55 (253)
Q Consensus 9 ~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvayKn~i~ 55 (253)
|.+.+|.-+-|+|+-+|+....+.+.++++..|--..|..||..+=.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 56778888889999999999999999999999999999999987643
No 88
>PF03755 YicC_N: YicC-like family, N-terminal region ; InterPro: IPR013527 Proteins in this entry are homologues of YicC (P23839 from SWISSPROT) from Escherichia coli. Although it is relatively poorly characterised YicC has been shown to be important for cells in the stationary phase, and essential for growth at high temperatures []. This domain is found at the N-terminal region of these proteins.
Probab=22.60 E-value=1.8e+02 Score=23.89 Aligned_cols=62 Identities=31% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhccCCCCCcchhhhhhhhH-HHHHHHhCC---hHHHHHHHHHHHHHHHHhhcc
Q 025437 148 HSLKAYEAATAAAASELPPTHPIRLGLALNFS-VFYYEILNS---PERACHLAKQAFDEAIAELDS 209 (253)
Q Consensus 148 ~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~S-VF~yei~~~---~~~A~~iak~afd~Ai~~ld~ 209 (253)
....+|-+++.-....++...|+.++..|.+. ||..+--.+ .+..-.....++++|+..+..
T Consensus 82 ~l~~~y~~~l~~l~~~~~~~~~~~~~~ll~~p~v~~~~~~~~~~~~e~~~~~l~~~l~~AL~~l~~ 147 (159)
T PF03755_consen 82 ELAKAYYEALKELAEELGLAGPISLDDLLRLPGVLKVEEEEDEEEEEELWEALLEALEEALDELIA 147 (159)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHcCCCcccccCCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666678888899999999886 444122112 223457788999999887754
No 89
>PRK14574 hmsH outer membrane protein; Provisional
Probab=22.57 E-value=9.4e+02 Score=25.50 Aligned_cols=45 Identities=11% Similarity=0.075 Sum_probs=32.6
Q ss_pred hCChHHHHHHHHHHHHHHHH------hh-------c-cCCccchhhHHHHHHHHHhhHh
Q 025437 186 LNSPERACHLAKQAFDEAIA------EL-------D-SLNEESYKDSTLIMQLLRDNLT 230 (253)
Q Consensus 186 ~~~~~~A~~iak~afd~Ai~------~l-------d-~l~ee~y~ds~~ilqLLrdNl~ 230 (253)
.+.|++|..|-++++...-+ .+ - -++.+.|.++...++-+.++.-
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p 398 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTP 398 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC
Confidence 69999999999998875410 11 1 1345779999999998888644
No 90
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=22.44 E-value=5.6e+02 Score=22.81 Aligned_cols=34 Identities=18% Similarity=0.005 Sum_probs=28.6
Q ss_pred cHhhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 025437 4 EREHHVYLARLAEQAERYDEMVEAMKKVAKLDVE 37 (253)
Q Consensus 4 ~re~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~ 37 (253)
.++-....|-++-..|+++.+..++.++.+..|.
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~ 75 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPR 75 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 4666778888999999999999999999876553
No 91
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=21.90 E-value=87 Score=21.73 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=15.7
Q ss_pred HHHHhcCHHHHHHHHHHHHh
Q 025437 14 LAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 14 laeq~ery~Dm~~~mk~~~~ 33 (253)
=.=+.|+|+++.+|+++++.
T Consensus 32 gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 32 GLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 34467999999999999885
No 92
>PHA02103 hypothetical protein
Probab=21.88 E-value=26 Score=27.77 Aligned_cols=14 Identities=43% Similarity=0.728 Sum_probs=11.2
Q ss_pred ccccccccccccCc
Q 025437 126 KGDYYRYLAEFKGA 139 (253)
Q Consensus 126 kgDyyRYlaE~~~~ 139 (253)
.-|||||.+|-..+
T Consensus 78 ipdyyryf~ee~e~ 91 (135)
T PHA02103 78 IPDYYRYFGEEAEG 91 (135)
T ss_pred ChHHHHHhcccchh
Confidence 47999999986655
No 93
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=21.85 E-value=3.5e+02 Score=20.28 Aligned_cols=44 Identities=23% Similarity=0.111 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAKLDVELTVEERNLVSVGY 50 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~Ls~eERnLlsvay 50 (253)
+..+.+|....+.|+|+++...+.+++..+|. +.+-+..+..+|
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~ 61 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACC 61 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 34567788888889999999999888877665 445555555554
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=21.76 E-value=1.7e+02 Score=26.47 Aligned_cols=47 Identities=21% Similarity=0.280 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFD 201 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd 201 (253)
.+.|.+.|++|+.++-+ .=-+--||.-|++.- |.+++|...-.+|..
T Consensus 85 ~~~A~e~YrkAlsl~p~--------~GdVLNNYG~FLC~q-g~~~eA~q~F~~Al~ 131 (250)
T COG3063 85 NDLADESYRKALSLAPN--------NGDVLNNYGAFLCAQ-GRPEEAMQQFERALA 131 (250)
T ss_pred hhhHHHHHHHHHhcCCC--------ccchhhhhhHHHHhC-CChHHHHHHHHHHHh
Confidence 45789999999976422 223456999999995 699998776555543
No 95
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=21.31 E-value=1.2e+02 Score=22.67 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhh----hhhhhHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLG----LALNFSVFY 182 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLg----L~LN~SVF~ 182 (253)
+....+.-+.|++-- ...|.||..|+ +.-+|++|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 444555556665443 48999999998 666777765
No 96
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=21.29 E-value=8.7e+02 Score=24.63 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 025437 8 HVYLARLAEQAERYDEMVEAMKKVAKLDVEL 38 (253)
Q Consensus 8 ~~~~Aklaeq~ery~Dm~~~mk~~~~~~~~L 38 (253)
+..++.+.-+.|++++++..+++++..+|..
T Consensus 113 ~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~ 143 (656)
T PRK15174 113 VLLVASVLLKSKQYATVADLAEQAWLAFSGN 143 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4556667777777777777777777665553
No 97
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=21.04 E-value=3.3e+02 Score=24.53 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=54.0
Q ss_pred cCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHhhhhhhhhHHHHHHHhHhhhhhhhCc-hhHHHHHHHHHHHHH-HHHH
Q 025437 19 ERYDEMVEAMKKVAK-LDVELTVEERNLVSVGYKNVIGARRASWRILSSIEQKEEAKGN-EQNVKRIKEYRQRVE-DELA 95 (253)
Q Consensus 19 ery~Dm~~~mk~~~~-~~~~Ls~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ki~-~EL~ 95 (253)
+-.++..++|+..+. ..++|+.+|-|+.-..+...-+.. +.... ...++ +..++.....-+|+. -++.
T Consensus 79 ~sPe~l~~ll~~yi~s~~~dl~~~EL~~~~~k~~~~~dt~-------~f~~~--~~~~n~P~~Iq~~~~~~kK~vf~~~l 149 (271)
T KOG3089|consen 79 GSPEDLQKLLKDYISSRRLDLELEELNLPDSKFLKANDTT-------HFLSS--YLKGNCPKWIQLRKNHSKKKVFVLML 149 (271)
T ss_pred CChHHHHHHHHHHHHhhcCcchhhhhcchHHHHHhhhhhh-------hhchH--hhhcccHHHHHhccCCchhhhhHHHH
Confidence 789999999999984 689999999999877665444322 11111 11122 344555555544544 7888
Q ss_pred HHHHHHHHHHhh
Q 025437 96 KICNDILSVIDE 107 (253)
Q Consensus 96 ~~C~eii~lid~ 107 (253)
-+|-++++.|+-
T Consensus 150 I~c~sa~Ral~~ 161 (271)
T KOG3089|consen 150 IICSSAVRALEL 161 (271)
T ss_pred HHHHHHHHHHhc
Confidence 899999999983
No 98
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.87 E-value=80 Score=27.15 Aligned_cols=57 Identities=35% Similarity=0.538 Sum_probs=44.3
Q ss_pred ccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHHHhhHhh
Q 025437 162 SELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTL 231 (253)
Q Consensus 162 ~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLLrdNl~~ 231 (253)
...||++-+.|-|.-|.-+ -| +.++|..+.++-+..|...++.+.+| ++.|||++|-
T Consensus 104 a~V~~~~kV~LWLGAnVMl-EY----~leEAeaLLkknl~sa~k~l~~~~~D--------ldfLrdQvTT 160 (187)
T KOG3313|consen 104 ASVPPTDKVYLWLGANVML-EY----DLEEAEALLKKNLTSAVKSLDVLEED--------LDFLRDQVTT 160 (187)
T ss_pred eecCCcCeEEEEecceeEE-Ee----cHHHHHHHHHhhHHHHHHHHHHHHHH--------HHHHHhhcee
Confidence 3689999888776655422 22 45899999999999999999877666 8899999873
No 99
>PRK15331 chaperone protein SicA; Provisional
Probab=20.23 E-value=3.9e+02 Score=22.60 Aligned_cols=70 Identities=11% Similarity=0.127 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCcchhhhhhhhHHHHHHHhCChHHHHHHHHHHHHHHHHhhccCCccchhhHHHHHHHH
Q 025437 146 ADHSLKAYEAATAAAASELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLL 225 (253)
Q Consensus 146 ~~~a~~aY~~A~~~a~~~L~pt~pirLgL~LN~SVF~yei~~~~~~A~~iak~afd~Ai~~ld~l~ee~y~ds~~ilqLL 225 (253)
=++|.++|--|.-+...+ |.-|.+.| -.|=-+|++.+|.. +|.-|+..-. ..+-...+...+..|
T Consensus 87 y~~Ai~~Y~~A~~l~~~d--p~p~f~ag-------qC~l~l~~~~~A~~----~f~~a~~~~~--~~~l~~~A~~~L~~l 151 (165)
T PRK15331 87 FQKACDLYAVAFTLLKND--YRPVFFTG-------QCQLLMRKAAKARQ----CFELVNERTE--DESLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHHcccCC--CCccchHH-------HHHHHhCCHHHHHH----HHHHHHhCcc--hHHHHHHHHHHHHHH
Confidence 345666666666554332 22234433 34556899988876 7777775211 112233466667666
Q ss_pred HhhHh
Q 025437 226 RDNLT 230 (253)
Q Consensus 226 rdNl~ 230 (253)
..|.+
T Consensus 152 ~~~~~ 156 (165)
T PRK15331 152 KTAET 156 (165)
T ss_pred Hcccc
Confidence 65543
No 100
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=20.15 E-value=2.9e+02 Score=20.06 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 025437 6 EHHVYLARLAEQAERYDEMVEAMKKVAK 33 (253)
Q Consensus 6 e~~~~~Aklaeq~ery~Dm~~~mk~~~~ 33 (253)
-+++-.|--.+++|+|++++.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567778888899999999888877764
No 101
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=20.04 E-value=8.4e+02 Score=24.39 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HhhhhhhhhHHHHHHHhHhhhhhhhCchhHHHHHHHHHHHHH
Q 025437 21 YDEMVEAMKKVAKLDVELTVEERNLVSVG---YKNVIGARRASWRILSSIEQKEEAKGNEQNVKRIKEYRQRVE 91 (253)
Q Consensus 21 y~Dm~~~mk~~~~~~~~Ls~eERnLlsva---yKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki~ 91 (253)
.++.-++|+.... ..+.-.+|..+|..| |..++..-+..+..|..--+++....+..-.+.++.||.++.
T Consensus 121 L~~v~~~~~~~~~-~~~~e~~q~~~LekAl~~~~~i~~~E~~~l~~L~~AL~kE~~~Rt~dE~~mv~~yr~ki~ 193 (508)
T PF00901_consen 121 LEKVYKFMKGQEK-VEEEEENQIEILEKALKSYGKIVKEENKQLDRLARALQKESRERTQDERKMVEEYRQKID 193 (508)
T ss_pred HHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 4445555544332 344556677788776 557788888888888777777765555566678888887764
Done!