Query 025438
Match_columns 253
No_of_seqs 28 out of 30
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 10:20:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025438.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025438hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3w03_C DNA repair protein XRCC 94.4 2 6.7E-05 37.1 15.2 131 22-162 32-173 (184)
2 1ik9_A DNA repair protein XRCC 93.0 0.79 2.7E-05 39.8 10.4 62 25-89 15-78 (213)
3 3mud_A DNA repair protein XRCC 93.0 1.2 4E-05 38.4 11.3 122 38-180 33-164 (175)
4 3q4f_C DNA repair protein XRCC 89.3 6.3 0.00022 34.3 12.1 128 25-162 44-182 (186)
5 2y3w_A SAS6, spindle assembly 51.6 80 0.0027 26.4 8.7 94 40-136 47-157 (182)
6 2llh_A Nucleophosmin; nucleola 44.4 6.7 0.00023 29.7 0.0 34 55-88 21-59 (74)
7 1r8s_E ARNO; protein transport 35.5 10 0.00035 32.7 0.7 54 40-95 143-199 (203)
8 3ce9_A Glycerol dehydrogenase; 31.0 24 0.00081 31.2 2.3 55 72-132 73-129 (354)
9 2y3v_A SAS6, spindle assembly 29.7 1.4E+02 0.0046 24.5 6.6 94 40-136 47-157 (159)
10 1ku1_A ARF guanine-nucleotide 28.6 17 0.00057 31.9 0.9 55 40-95 169-225 (230)
11 3fwb_B Nuclear mRNA export pro 26.9 45 0.0015 23.6 2.7 19 132-150 8-26 (55)
12 3qbe_A 3-dehydroquinate syntha 25.8 49 0.0017 30.4 3.5 76 41-126 46-140 (368)
13 2zet_C Melanophilin; complex, 25.5 1.1E+02 0.0037 25.1 5.2 57 115-180 7-63 (153)
14 1v5r_A Growth-arrest-specific 23.9 15 0.0005 29.1 -0.3 20 66-85 56-75 (97)
15 1yel_A AT1G16640; CESG, protei 22.5 42 0.0014 24.9 2.0 47 41-95 41-87 (104)
16 1q14_A HST2 protein; histone d 22.4 1.1E+02 0.0038 28.1 5.2 112 84-201 216-348 (361)
17 3ltl_A Brefeldin A-inhibited g 21.6 30 0.001 30.0 1.2 50 40-92 151-204 (211)
18 2x4k_A 4-oxalocrotonate tautom 20.8 1.4E+02 0.0047 18.8 4.1 31 115-148 2-32 (63)
No 1
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=94.41 E-value=2 Score=37.11 Aligned_cols=131 Identities=16% Similarity=0.223 Sum_probs=86.2
Q ss_pred CCCccceEEEEeC-CC-CCCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccc-----eEee
Q 025438 22 SDSLGRFLFHVSA-PD-SSHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDV-----KLIL 94 (253)
Q Consensus 22 s~~~~pfLFh~~a-~d-~~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~V-----kL~l 94 (253)
|-+-.+++..+.= .| .+.+.|.+||-+ ++|.+..|-+++..+-+++|- .-++|++-|+.+|-+++- ++-+
T Consensus 32 s~p~~~yflk~~W~~~l~sgF~L~LTDG~-sAW~G~vSe~~I~~~A~~~~m--~~e~Yv~eL~kAl~~~~~~~~~Y~f~~ 108 (184)
T 3w03_C 32 SEPSITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNF 108 (184)
T ss_dssp TCTTSCEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEE
T ss_pred CCCCceEEEEEEeccCCCCceEEEEECCC-ceeeEEcCHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCceEEEec
Confidence 3344555555544 22 367999999999 789999999999998888654 788999999999965443 5555
Q ss_pred cCCCCCCCcccceeeeecc-CCCCe--eEEeeccccchh-HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025438 95 EGHSNADGAAYAKIVAQKS-KGMPR--ISISLTRLTGSA-ATEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (253)
Q Consensus 95 ~~~s~s~G~~~akLVa~Ka-KGmP~--ItI~L~~l~~sa-a~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~ 162 (253)
.+ ...++.--|. +++-. =+++|.++.+.+ +.--|-+++++-+..++..-.++.+|-+|..+
T Consensus 109 s~-------e~~~fs~eK~l~di~frLGSv~L~~v~~p~e~i~elid~~ld~~~~L~~~n~~LqkeNeRL~~ 173 (184)
T 3w03_C 109 SK-------ESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 173 (184)
T ss_dssp CT-------TTCEEEEEEEETTEEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cc-------cceEEEeeeccCceEEEEeeeeeeECCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 2355544444 33321 147788888755 33336667777666666555555555555443
No 2
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=93.03 E-value=0.79 Score=39.84 Aligned_cols=62 Identities=16% Similarity=0.236 Sum_probs=49.4
Q ss_pred ccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccccc
Q 025438 25 LGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSED 89 (253)
Q Consensus 25 ~~pfLFh~~a~d~--~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~ 89 (253)
-..++.|+...+. .++.|++||-+ +.|.++++-+++...-+. .+++..+|++-+...|..++
T Consensus 15 ~~~~~l~~~w~~~~~~~f~l~~TdG~-~~w~g~v~~~~i~~rAk~--~~~~~eey~~~l~~aL~~~~ 78 (213)
T 1ik9_A 15 SITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADD--MAMEKGKYVGELRKALLSGA 78 (213)
T ss_dssp EEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHH--TTCCHHHHHHHHHHHHCC--
T ss_pred CCeEEEEEEEcCCCCCceEEEEecCC-CceEEEecHHHHHHHHHh--cCCCHHHHHHHHHHHHhCCC
Confidence 3567778877653 78999999985 789999999999854444 57899999999999998883
No 3
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=93.03 E-value=1.2 Score=38.40 Aligned_cols=122 Identities=17% Similarity=0.283 Sum_probs=86.9
Q ss_pred CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhccc-----ccceEeecCCCCCCCcccceeeeec
Q 025438 38 SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKS-----EDVKLILEGHSNADGAAYAKIVAQK 112 (253)
Q Consensus 38 ~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS-----~~VkL~l~~~s~s~G~~~akLVa~K 112 (253)
+.+.|..||-| ++|....|-+++..+-|++|- --..|++-|+-.|-+ ++-++.|.+. .-++-=.|
T Consensus 33 ~gf~i~ltDG~-saW~g~Vs~~~i~~eA~~~~m--e~e~Yv~el~kAl~~~~~~~~~~~f~~s~e-------~~~~syek 102 (175)
T 3mud_A 33 SGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE-------SCYFFFEK 102 (175)
T ss_dssp GEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHTTCCCTTCCEEEEECTT-------TCEEEEEE
T ss_pred cceEEEEeCCc-ceeeeeeCHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEecChh-------HHHHHHHH
Confidence 56899999999 579999999999999998876 467899999999933 4788888654 22232233
Q ss_pred cCCCCeeEEee-----ccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 025438 113 SKGMPRISISL-----TRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (253)
Q Consensus 113 aKGmP~ItI~L-----~~l~~saa~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~L~~~LsaEKeknE~mq~q 180 (253)
. +.-+++.| ..+...| ++|-.|.- -+.| .+.+=|..+.+|+..|..||+++..||..
T Consensus 103 ~--lk~vsfrLGs~~Lk~a~~pa--E~ireli~---~Aer----tV~kLqkeiD~LEDeL~~eKek~k~i~~e 164 (175)
T 3mud_A 103 N--LKDVSFRLGSFNLEKVENPA--EVIRELIC---YCLD----TTAKNEKSIDDLEEKVAHAKEENLNMHQM 164 (175)
T ss_dssp E--CSSCEEEEEEEECEECSCHH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHhcccccccCCChH--HHHHHHHH---HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34455555 7777755 34443321 1222 23344678899999999999999998876
No 4
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=89.27 E-value=6.3 Score=34.30 Aligned_cols=128 Identities=15% Similarity=0.228 Sum_probs=90.6
Q ss_pred ccceEEEEeCCCC--CCeEEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhc-----ccccceEeecCC
Q 025438 25 LGRFLFHVSAPDS--SHLLIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASI-----KSEDVKLILEGH 97 (253)
Q Consensus 25 ~~pfLFh~~a~d~--~hL~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~sl-----sS~~VkL~l~~~ 97 (253)
..+.+..+.--.. +.+.|..||-| ++|.+..|-+++..+-|++|- --..|++-|+-+| ..++-++.|.++
T Consensus 44 ~~~yfLqvsW~~~lgsGF~i~LTDGq-SaW~G~VS~~~Is~eAd~m~M--e~e~YV~eL~KALv~~~~~~~~y~F~~S~e 120 (186)
T 3q4f_C 44 SITHFLQVSWEKTLESGFVITLTDGH-SAWTGTVSESEISQEADDMAM--EKGKYVGELRKALLSGAGPADVYTFNFSKE 120 (186)
T ss_dssp EEEEEEEEEESSCGGGEEEEEEECSS-CEEEEEEEHHHHHHHHHHTTC--CHHHHHHHHHHHHSSCCCSSCCEEEEECTT
T ss_pred CccEEEEEEeccCCCcceEEEEeCCc-ceeeeEECHHHHHHHHHHhcC--cHHHHHHHHHHHHhcCCCCCcceEEEeccc
Confidence 3444444444433 56999999999 579999999999999999876 4678999999999 566888888753
Q ss_pred CCCCCcccceeeeecc-CCC--CeeEEeeccccchhH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 025438 98 SNADGAAYAKIVAQKS-KGM--PRISISLTRLTGSAA-TEAMAKLSLELFTAFRSMQTLIVQEQERCLQ 162 (253)
Q Consensus 98 s~s~G~~~akLVa~Ka-KGm--P~ItI~L~~l~~saa-~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~ 162 (253)
+..+.=.|. ||+ .+=++.|.++..-+. .-=|-+.||.=-..++..-+|+.+|-+|.++
T Consensus 121 -------~~~Fs~eK~LkdvsF~LGSv~L~~V~nPaE~irELi~~~L~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 121 -------SCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp -------TCEEEEEEECSSCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -------eeEEEEEEEecCcEEEEeeEEeeeCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554444 443 334666777776443 4445566777777777777777777777654
No 5
>2y3w_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.98A {Danio rerio}
Probab=51.64 E-value=80 Score=26.42 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=65.5
Q ss_pred eEEEEec-----ccccchhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-c
Q 025438 40 LLIQVTD-----FRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG-A 103 (253)
Q Consensus 40 L~v~vTD-----fHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~----slsS---~~VkL~l~~~s~s---~G-~ 103 (253)
|+|.+|| || +...++-++-+.||.+=++==.|.+|...|.. |..+ ...++++.-..++ +| .
T Consensus 47 l~ieLTdd~D~fFl---Y~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~~ 123 (182)
T 2y3w_A 47 LVVRLTDDTDLYFL---YNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSP 123 (182)
T ss_dssp EEEEEEETTEEEEE---EEEEEEHHHHHHHHHHTTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEEECCCSSSCCC
T ss_pred EEEEECcCCCCcEE---EEEEeCHHHHHHHHHHcCeeeeHHHhHHHHHHHHHHHhccccccCceEEEEEeeccccCCCCe
Confidence 9999998 44 45678889999999999999999999776654 4443 3455555432222 34 2
Q ss_pred ccceeeeecc-CCCCeeEEeeccccchhHHHHHH
Q 025438 104 AYAKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (253)
Q Consensus 104 ~~akLVa~Ka-KGmP~ItI~L~~l~~saa~D~ma 136 (253)
..-.+|-.-. |=+..+++++....+.+...-++
T Consensus 124 ~~L~~vE~~~FK~l~hLsL~f~~a~d~~ik~yLa 157 (182)
T 2y3w_A 124 SNLNIVETNADKHLTHLSLKLLPGSDTDIKKYLA 157 (182)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEECCHHHHHHHHH
T ss_pred EEEEEEEeCCCcEEEEEEEEeecCCHHHHHHHHH
Confidence 3333443333 78999999999988877666665
No 6
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding protein; NMR {Homo sapiens} PDB: 2vxd_A
Probab=44.40 E-value=6.7 Score=29.71 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=25.6
Q ss_pred ccccchhh-hhHhhhcCCCChHH----HHHHHHHhcccc
Q 025438 55 KRSVLQLD-DMRDEIGIGGSWSE----FIDYVVASIKSE 88 (253)
Q Consensus 55 slSv~~Le-DlRD~VGIGGSwsd----F~dYl~~slsS~ 88 (253)
..||+++- -|+-.|.=|||..- |.+|+++||.=-
T Consensus 21 pssvedIKaKmqasieKg~slPKvE~KF~NyvKn~F~mt 59 (74)
T 2llh_A 21 PSSVEDIKAKMQASIEKGGSLPKVEAKFINYVKNCFRMT 59 (74)
Confidence 34555554 45668888999987 999999999743
No 7
>1r8s_E ARNO; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Homo sapiens} SCOP: a.118.3.1 PDB: 1r8m_E* 1r8q_E* 1s9d_E* 1pbv_A 1bc9_A
Probab=35.48 E-value=10 Score=32.68 Aligned_cols=54 Identities=22% Similarity=0.367 Sum_probs=39.9
Q ss_pred eEEEEecccccchhhccccchhhhhHhhhcC--CCChH-HHHHHHHHhcccccceEeec
Q 025438 40 LLIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--GGSWS-EFIDYVVASIKSEDVKLILE 95 (253)
Q Consensus 40 L~v~vTDfHS~tW~~slSv~~LeDlRD~VGI--GGSws-dF~dYl~~slsS~~VkL~l~ 95 (253)
|.++=||+|+-.-...+|.++- +|.--|| |+.++ ||+.++..++++...++.-+
T Consensus 143 iImLNTDlHn~~vk~kMt~~~F--i~n~rgin~g~d~p~e~L~~iYd~I~~~ei~~~~d 199 (203)
T 1r8s_E 143 VIMLNTDLHNPNVRDKMGLERF--VAMNRGINEGGDLPEELLRNLYDSIRNEPFKIPED 199 (203)
T ss_dssp HHHHHHHHHCTTCCSCCCHHHH--HHHTTTTBTTBCCCHHHHHHHHHHHHHSCCCCCCC
T ss_pred HHHhcccccCcccccccCHHHH--HHHhhcccCCCCCCHHHHHHHHHHHHhCCCCCccC
Confidence 4455699998777778887765 3444466 55565 99999999999999886544
No 8
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=31.02 E-value=24 Score=31.19 Aligned_cols=55 Identities=16% Similarity=0.133 Sum_probs=37.1
Q ss_pred CChHHHHHHHHHhcccccceEeecCCCCCCCc--ccceeeeeccCCCCeeEEeeccccchhHH
Q 025438 72 GSWSEFIDYVVASIKSEDVKLILEGHSNADGA--AYAKIVAQKSKGMPRISISLTRLTGSAAT 132 (253)
Q Consensus 72 GSwsdF~dYl~~slsS~~VkL~l~~~s~s~G~--~~akLVa~KaKGmP~ItI~L~~l~~saa~ 132 (253)
++++ -++-+ .-+...+.-+++.= +-|. |.||.||.. +|+|.|.||-|-++||.++
T Consensus 73 ~~~~-~v~~~-~~~~~~~~d~IIav---GGGsv~D~aK~vA~~-~~~p~i~IPTT~~tgse~t 129 (354)
T 3ce9_A 73 IDFD-EIGTN-AFKIPAEVDALIGI---GGGKAIDAVKYMAFL-RKLPFISVPTSTSNDGFSS 129 (354)
T ss_dssp CBHH-HHHHH-HTTSCTTCCEEEEE---ESHHHHHHHHHHHHH-HTCCEEEEESCCSSGGGTS
T ss_pred CCHH-HHHHH-HHhhhcCCCEEEEE---CChHHHHHHHHHHhh-cCCCEEEecCcccCCCCCC
Confidence 4554 44555 66766666655531 1133 899999943 6999999999999877654
No 9
>2y3v_A SAS6, spindle assembly abnormal protein 6 homolog; structural protein, cytoskeleton, basal BODY, centriole, CAR cartwheel HUB; 1.92A {Danio rerio}
Probab=29.71 E-value=1.4e+02 Score=24.53 Aligned_cols=94 Identities=19% Similarity=0.312 Sum_probs=66.0
Q ss_pred eEEEEec-----ccccchhhccccchhhhhHhhhcCCCChHHHHHHHHH----hccc---ccceEeecCCCCC---CC-c
Q 025438 40 LLIQVTD-----FRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVA----SIKS---EDVKLILEGHSNA---DG-A 103 (253)
Q Consensus 40 L~v~vTD-----fHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~----slsS---~~VkL~l~~~s~s---~G-~ 103 (253)
|+|.+|| || +...++-++-+.||.+=++==.|.+|...|.. |..+ ...++++.-..++ +| .
T Consensus 47 l~ieLT~~~D~fFl---Y~~~i~e~dF~~lK~eQ~L~VdF~~Fp~~li~lL~~c~~~~~~~~~~f~~~l~~~~~~~d~~~ 123 (159)
T 2y3v_A 47 LVVRLTDDTDLYFL---YNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSP 123 (159)
T ss_dssp EEEEEEETTEEEEE---EEEEECHHHHHHHHHHHTCCSCGGGHHHHHHHHHHHHHHHTTSSSCSEEEEEECSSCTTSCCC
T ss_pred EEEEECcCCCCcEE---EEEEeCHHHHHHHHHhcceeeeHHHhHHHHHHHHHHHHcccccCCcEEEEEEeecccccCCCc
Confidence 9999998 44 45678889999999999999999999777654 4443 3455555432221 34 2
Q ss_pred ccceeeeecc-CCCCeeEEeeccccchhHHHHHH
Q 025438 104 AYAKIVAQKS-KGMPRISISLTRLTGSAATEAMA 136 (253)
Q Consensus 104 ~~akLVa~Ka-KGmP~ItI~L~~l~~saa~D~ma 136 (253)
..-.+|=+-. |=+..+++++....+.+...-+|
T Consensus 124 ~~L~~vE~~eFK~l~hLsL~f~~a~d~~ik~yLa 157 (159)
T 2y3v_A 124 SNLNIVETNAFKHLTHLSLKLLPGSDTDIKKYLA 157 (159)
T ss_dssp EEEEEEECCSSCCEEEEEEEEEECCHHHHHHHHT
T ss_pred EEEEEEEcCCccEEEEEEEEeecCCHHHHHHHhh
Confidence 3344444434 88999999999988877765554
No 10
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine nucleotide exchange factor (GEF), ARF small GTP-binding proteins; 1.93A {Saccharomyces cerevisiae} SCOP: a.118.3.1 PDB: 1re0_B*
Probab=28.56 E-value=17 Score=31.88 Aligned_cols=55 Identities=15% Similarity=0.228 Sum_probs=38.1
Q ss_pred eEEEEecccccchhhccccchhh-hhHhhhcCCCCh-HHHHHHHHHhcccccceEeec
Q 025438 40 LLIQVTDFRSNTWEAKRSVLQLD-DMRDEIGIGGSW-SEFIDYVVASIKSEDVKLILE 95 (253)
Q Consensus 40 L~v~vTDfHS~tW~~slSv~~Le-DlRD~VGIGGSw-sdF~dYl~~slsS~~VkL~l~ 95 (253)
|.++=||+|+-.=...+|.++-= ++| -|..|..+ .+|++.+..+++++++++-=+
T Consensus 169 iImLNTDlHnp~vk~kMT~~~FikN~r-g~n~g~d~p~e~L~~iY~~I~~~ei~~~ee 225 (230)
T 1ku1_A 169 IIMLNTDLHNPQVKEHMSFEDYSGNLK-GCCNHKDFPFWYLDRVYCSIRDKEIVMPEE 225 (230)
T ss_dssp HHHHHHHHTCTTCSSCCCHHHHHHHTT-TCBTTBCCCHHHHHHHHHHHHHSCCCCC--
T ss_pred HHHHhhhhccccccCCCCHHHHHHHhh-cccCCCCCCHHHHHHHHHHHHhCcccCCcc
Confidence 55667999987666777776543 333 23335556 589999999999999876433
No 11
>3fwb_B Nuclear mRNA export protein SAC3; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae}
Probab=26.90 E-value=45 Score=23.64 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=16.0
Q ss_pred HHHHHHhhHHHHHHHHHHH
Q 025438 132 TEAMAKLSLELFTAFRSMQ 150 (253)
Q Consensus 132 ~D~ma~~sl~Lf~afrs~q 150 (253)
..+|.+||=+||.||-+-+
T Consensus 8 ~~iI~sLs~eLy~AFihE~ 26 (55)
T 3fwb_B 8 KDFIDTMTRELYDAFLHER 26 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4789999999999996643
No 12
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=25.78 E-value=49 Score=30.38 Aligned_cols=76 Identities=17% Similarity=0.108 Sum_probs=45.0
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcC--------CC----ChHHHHHHHHHhcc----cccceEeecCCCCCCCc-
Q 025438 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGI--------GG----SWSEFIDYVVASIK----SEDVKLILEGHSNADGA- 103 (253)
Q Consensus 41 ~v~vTDfHS~tW~~slSv~~LeDlRD~VGI--------GG----SwsdF~dYl~~sls----S~~VkL~l~~~s~s~G~- 103 (253)
.++|||=+ .|.. ++.+.+.-..-|| +| +++....-+..... ..++=+-+++ |.
T Consensus 46 vlIVtd~~--v~~~---~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGG-----Gsv 115 (368)
T 3qbe_A 46 VAVVHQPG--LAET---AEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGG-----GAA 115 (368)
T ss_dssp EEEEECGG--GHHH---HHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEES-----HHH
T ss_pred EEEEECcc--HHHH---HHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECC-----hHH
Confidence 57788864 4552 4444443333343 34 45444333322222 2367777776 44
Q ss_pred -ccceeeeecc-CCCCeeEEeeccc
Q 025438 104 -AYAKIVAQKS-KGMPRISISLTRL 126 (253)
Q Consensus 104 -~~akLVa~Ka-KGmP~ItI~L~~l 126 (253)
|.||.+|--- .|+|.|.||-|.+
T Consensus 116 ~D~ak~~Aa~~~rgip~i~IPTTll 140 (368)
T 3qbe_A 116 TDVAGFAAATWLRGVSIVHLPTTLL 140 (368)
T ss_dssp HHHHHHHHHHGGGCCEEEEEECSHH
T ss_pred HHHHHHHHHHhccCCcEEEECCCCc
Confidence 7899998443 5999999999876
No 13
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=25.53 E-value=1.1e+02 Score=25.13 Aligned_cols=57 Identities=23% Similarity=0.286 Sum_probs=36.4
Q ss_pred CCCeeEEeeccccchhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 025438 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ 180 (253)
Q Consensus 115 GmP~ItI~L~~l~~saa~D~ma~~sl~Lf~afrs~q~~~~~eqe~~s~L~~~LsaEKeknE~mq~q 180 (253)
+|+.. +.|..|++--. ...| +.+...++.-..|++|+.+|...|..++.|.+.+.++
T Consensus 7 ~m~~~-~dLs~LteeEr-----~~Il---~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~ 63 (153)
T 2zet_C 7 GMGKR-LDLSTLTDEEA-----EHVW---AVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDT 63 (153)
T ss_dssp ----C-CCCTTSCHHHH-----HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCccC-CCcccCCHHHH-----HHHH---HHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 45532 66777766433 2222 2334556666789999999999998888788877654
No 14
>1v5r_A Growth-arrest-specific protein 2; GAS2 domain, zinc binding domain, apoptosis, cell cycle, structural genomics; NMR {Mus musculus} SCOP: d.82.4.1
Probab=23.87 E-value=15 Score=29.08 Aligned_cols=20 Identities=25% Similarity=0.692 Sum_probs=16.8
Q ss_pred hhhcCCCChHHHHHHHHHhc
Q 025438 66 DEIGIGGSWSEFIDYVVASI 85 (253)
Q Consensus 66 D~VGIGGSwsdF~dYl~~sl 85 (253)
=.|-+||+|.++-+||..--
T Consensus 56 vMVRVGGGW~~L~~yL~khd 75 (97)
T 1v5r_A 56 VMVRVGGGWETFAGYLLKHD 75 (97)
T ss_dssp EEEEETTEEEEHHHHHHHHC
T ss_pred EEEEeCCcHHHHHHHHHHcC
Confidence 46889999999999998643
No 15
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=22.53 E-value=42 Score=24.85 Aligned_cols=47 Identities=11% Similarity=0.385 Sum_probs=35.3
Q ss_pred EEEEecccccchhhccccchhhhhHhhhcCCCChHHHHHHHHHhcccccceEeec
Q 025438 41 LIQVTDFRSNTWEAKRSVLQLDDMRDEIGIGGSWSEFIDYVVASIKSEDVKLILE 95 (253)
Q Consensus 41 ~v~vTDfHS~tW~~slSv~~LeDlRD~VGIGGSwsdF~dYl~~slsS~~VkL~l~ 95 (253)
.|.+.|-.-.+|+-.++.. .+.+.+.++|.+|+. ...|+-||+ |+|+
T Consensus 41 ~v~L~~~~G~~W~v~~~~~-----~~~~~l~~GW~~Fv~--~~~L~~GD~-lvF~ 87 (104)
T 1yel_A 41 TVDLLDYSGRSWTVRMKKR-----GEKVFLTVGWENFVK--DNNLEDGKY-LQFI 87 (104)
T ss_dssp EEEEEETTSCEEEEEEEEE-----TTEEEECTTHHHHHH--HHTCCTTCE-EEEE
T ss_pred EEEEECCCCCEEEEEEEEE-----CCcEEEccChHHHHH--HcCCCCCCE-EEEE
Confidence 5666777889999888754 357899999999985 357888884 3444
No 16
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=22.38 E-value=1.1e+02 Score=28.15 Aligned_cols=112 Identities=12% Similarity=0.154 Sum_probs=41.9
Q ss_pred hcccccceEeecCCCCCCCcccceeeeeccCCCCeeEEeecccc-----ch--------hHHHHHHHh----hHH--HHH
Q 025438 84 SIKSEDVKLILEGHSNADGAAYAKIVAQKSKGMPRISISLTRLT-----GS--------AATEAMAKL----SLE--LFT 144 (253)
Q Consensus 84 slsS~~VkL~l~~~s~s~G~~~akLVa~KaKGmP~ItI~L~~l~-----~s--------aa~D~ma~~----sl~--Lf~ 144 (253)
-+..-+|=|+++-...-. ..++|+..-.+|.|+|-|-++... +. -+.++|..| .|. |-+
T Consensus 216 ~~~~aDllLviGTSl~V~--Paa~l~~~~~~g~~~v~IN~~~t~~~~~~~~~~d~~i~g~~~evl~~L~~~Lg~~~~l~~ 293 (361)
T 1q14_A 216 KHPQQPLVIVVGTSLAVY--PFASLPEEIPRKVKRVLCNLETVGDFKANKRPTDLIVHQYSDEFAEQLVEELGWQEDFEK 293 (361)
T ss_dssp ---CCCEEEEESCCCCST--TGGGHHHHSCTTSEEEEESSSCCHHHHHTCCTTCEEECSCHHHHHHHHHHHHTCHHHHHH
T ss_pred hhccCCEEEEECCCCCch--hHHHHHHHHhcCCeEEEEeCCCccccccCcccccEEEeCCHHHHHHHHHHHcCChhHHHH
Confidence 356678888887643332 345565443359999998876541 11 134555444 332 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCC-cchhHH-HhhhhcCCCCCCccc
Q 025438 145 AFRSMQTLIVQEQERCLQLEKEAAAEKERNENIQNQ-PLYSKR-QKLQKMNFSDKTDIS 201 (253)
Q Consensus 145 afrs~q~~~~~eqe~~s~L~~~LsaEKeknE~mq~q-~~~~~~-~Kl~~~s~~dk~~~~ 201 (253)
-+.....-..+-++++..+.+.++.|++++ +. +-..+- +|++.||..+..+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (361)
T 1q14_A 294 ILTAQGGMGDNSKEQLLEIVHDLENLSLDQ----SEHESADKKDKKLQRLNGHDSDEDG 348 (361)
T ss_dssp HHHHC-------CCHHHHHHHHHHC----------------------------------
T ss_pred HHHhhhccccccHHHHHHHHHhhhhhhhhh----cccchhhhhHHHHHHhhcccccccc
Confidence 333332233344566777777777777662 22 112333 777888877665443
No 17
>3ltl_A Brefeldin A-inhibited guanine nucleotide-exchange 1; all alpha, guanine-nucleotide releasing factor, signaling PR; 2.20A {Homo sapiens} SCOP: a.118.3.0 PDB: 3l8n_A 3swv_A
Probab=21.58 E-value=30 Score=29.97 Aligned_cols=50 Identities=20% Similarity=0.337 Sum_probs=36.9
Q ss_pred eEEEEecccccchhhccccchh-hhhHhhhcC--CCCh-HHHHHHHHHhcccccceE
Q 025438 40 LLIQVTDFRSNTWEAKRSVLQL-DDMRDEIGI--GGSW-SEFIDYVVASIKSEDVKL 92 (253)
Q Consensus 40 L~v~vTDfHS~tW~~slSv~~L-eDlRD~VGI--GGSw-sdF~dYl~~slsS~~VkL 92 (253)
|.++=||+|+-.=...+|.++- .++| || |+.+ .||+.++..+++++++++
T Consensus 151 iImLNTDlHn~~vk~kMt~~~Fi~n~r---g~n~g~d~p~e~L~~iYd~I~~~ei~l 204 (211)
T 3ltl_A 151 IIMLTTDLHSPQVKNKMTKEQYIKMNR---GINDSKDLPEEYLSAIYNEIAGKKISM 204 (211)
T ss_dssp HHHHHHHHTCTTCCSCCCHHHHHHHTC---SSCSSSSCCHHHHHHHHHHHHHSCCCC
T ss_pred HHHHhhhhcCccccCCCCHHHHHHHhh---cccCCCCCCHHHHHHHHHHHHhCCccC
Confidence 4456699998777777777653 3344 55 4444 689999999999999876
No 18
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.77 E-value=1.4e+02 Score=18.81 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.1
Q ss_pred CCCeeEEeeccccchhHHHHHHHhhHHHHHHHHH
Q 025438 115 GMPRISISLTRLTGSAATEAMAKLSLELFTAFRS 148 (253)
Q Consensus 115 GmP~ItI~L~~l~~saa~D~ma~~sl~Lf~afrs 148 (253)
.||.|+|.+.. +. -.+....|+-++++++..
T Consensus 2 ~MP~i~i~~~~--g~-s~e~k~~l~~~l~~~l~~ 32 (63)
T 2x4k_A 2 MMPIVNVKLLE--GR-SDEQLKNLVSEVTDAVEK 32 (63)
T ss_dssp CCCEEEEEEES--CC-CHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcC--CC-CHHHHHHHHHHHHHHHHH
Confidence 39999998765 32 335567777777777743
Done!