Query 025441
Match_columns 252
No_of_seqs 197 out of 1666
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 05:52:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025441.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025441hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1225 Bcp Peroxiredoxin [Pos 100.0 1.5E-29 3.3E-34 209.6 15.9 151 68-251 3-153 (157)
2 cd02970 PRX_like2 Peroxiredoxi 100.0 1.3E-28 2.8E-33 199.1 14.7 149 74-235 1-149 (149)
3 KOG4498 Uncharacterized conser 99.9 6.9E-28 1.5E-32 202.5 10.2 190 48-252 7-196 (197)
4 cd03018 PRX_AhpE_like Peroxire 99.9 6.1E-25 1.3E-29 178.5 15.8 144 70-249 2-149 (149)
5 PRK13191 putative peroxiredoxi 99.9 1.9E-24 4.2E-29 188.5 17.3 147 69-252 7-159 (215)
6 TIGR03137 AhpC peroxiredoxin. 99.9 1.5E-24 3.1E-29 185.0 16.0 144 70-251 3-153 (187)
7 PRK00522 tpx lipid hydroperoxi 99.9 2.9E-24 6.2E-29 180.0 17.4 147 69-252 18-167 (167)
8 cd03016 PRX_1cys Peroxiredoxin 99.9 2.6E-24 5.6E-29 185.8 16.6 145 71-251 1-151 (203)
9 PRK13599 putative peroxiredoxi 99.9 4.2E-24 9.2E-29 186.4 16.9 146 70-252 3-154 (215)
10 PTZ00137 2-Cys peroxiredoxin; 99.9 4E-24 8.7E-29 191.2 16.9 148 66-251 65-222 (261)
11 PRK13190 putative peroxiredoxi 99.9 5.3E-24 1.2E-28 183.9 16.6 144 69-251 2-151 (202)
12 cd03014 PRX_Atyp2cys Peroxired 99.9 9.9E-24 2.1E-28 170.8 15.5 141 70-249 1-143 (143)
13 PRK10382 alkyl hydroperoxide r 99.9 1.4E-23 3E-28 179.5 16.8 144 70-251 3-153 (187)
14 cd03013 PRX5_like Peroxiredoxi 99.9 8.6E-24 1.9E-28 175.4 14.6 137 71-239 1-144 (155)
15 PRK13189 peroxiredoxin; Provis 99.9 2.1E-23 4.5E-28 182.8 17.4 146 69-251 9-160 (222)
16 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.5E-23 3.2E-28 164.7 14.9 124 71-231 1-124 (124)
17 cd03015 PRX_Typ2cys Peroxiredo 99.9 3.5E-23 7.5E-28 173.8 16.8 143 71-251 1-154 (173)
18 PRK09437 bcp thioredoxin-depen 99.9 7E-23 1.5E-27 168.2 17.1 154 66-252 1-154 (154)
19 PF08534 Redoxin: Redoxin; In 99.9 4.4E-23 9.5E-28 167.4 15.4 143 70-247 1-146 (146)
20 PRK15000 peroxidase; Provision 99.9 7.6E-23 1.7E-27 176.6 16.5 145 70-251 3-159 (200)
21 cd02971 PRX_family Peroxiredox 99.9 2E-22 4.3E-27 161.7 15.5 138 74-246 1-139 (140)
22 cd03017 PRX_BCP Peroxiredoxin 99.9 1.8E-22 3.9E-27 162.1 15.0 139 73-247 1-139 (140)
23 PTZ00253 tryparedoxin peroxida 99.9 2.2E-21 4.7E-26 166.9 16.2 146 68-251 5-161 (199)
24 KOG0855 Alkyl hydroperoxide re 99.8 4.5E-20 9.8E-25 152.9 14.7 177 28-251 32-209 (211)
25 cd02969 PRX_like1 Peroxiredoxi 99.8 8.9E-20 1.9E-24 152.4 14.7 137 72-251 1-149 (171)
26 PF13911 AhpC-TSA_2: AhpC/TSA 99.8 6.5E-20 1.4E-24 144.2 12.2 114 119-236 2-115 (115)
27 COG0450 AhpC Peroxiredoxin [Po 99.8 2E-19 4.4E-24 152.8 14.9 145 69-251 3-158 (194)
28 PTZ00056 glutathione peroxidas 99.8 1.5E-19 3.2E-24 156.0 13.7 89 70-160 14-110 (199)
29 cd00340 GSH_Peroxidase Glutath 99.8 4.9E-20 1.1E-24 151.6 10.1 84 75-161 2-94 (152)
30 PLN02412 probable glutathione 99.8 2.2E-19 4.9E-24 150.5 12.8 133 71-234 5-149 (167)
31 TIGR02661 MauD methylamine deh 99.8 5.3E-19 1.2E-23 151.0 15.3 136 68-252 45-180 (189)
32 PTZ00256 glutathione peroxidas 99.8 3.6E-19 7.9E-24 151.2 13.4 89 71-160 16-113 (183)
33 PLN02399 phospholipid hydroper 99.8 6.7E-19 1.5E-23 155.6 15.5 90 70-161 74-172 (236)
34 PRK03147 thiol-disulfide oxido 99.8 1E-18 2.2E-23 145.2 14.9 139 67-251 33-172 (173)
35 TIGR02540 gpx7 putative glutat 99.8 6E-19 1.3E-23 145.2 12.2 84 75-160 2-94 (153)
36 cd03012 TlpA_like_DipZ_like Tl 99.8 1.1E-18 2.5E-23 138.8 10.9 107 85-235 13-125 (126)
37 PRK15412 thiol:disulfide inter 99.8 3E-18 6.5E-23 145.7 13.7 121 68-235 38-162 (185)
38 cd02968 SCO SCO (an acronym fo 99.8 6.3E-18 1.4E-22 135.9 12.3 130 74-233 1-141 (142)
39 TIGR00385 dsbE periplasmic pro 99.8 9.5E-18 2E-22 141.0 13.7 122 66-234 31-156 (173)
40 cd03010 TlpA_like_DsbE TlpA-li 99.7 8.2E-17 1.8E-21 127.7 12.6 116 73-235 1-120 (127)
41 cd02967 mauD Methylamine utili 99.7 1.3E-16 2.7E-21 123.9 13.4 83 76-160 1-84 (114)
42 cd02966 TlpA_like_family TlpA- 99.7 6.2E-16 1.3E-20 117.2 12.5 94 77-172 1-96 (116)
43 cd03011 TlpA_like_ScsD_MtbDsbE 99.6 3.5E-15 7.6E-20 117.2 13.1 119 76-249 1-121 (123)
44 PRK14018 trifunctional thiored 99.6 4.6E-15 1E-19 143.9 16.7 122 68-235 31-159 (521)
45 PRK10606 btuE putative glutath 99.6 7.9E-15 1.7E-19 125.1 12.7 94 73-169 3-111 (183)
46 KOG0854 Alkyl hydroperoxide re 99.6 2.2E-14 4.7E-19 120.1 13.7 155 66-252 3-166 (224)
47 PLN02919 haloacid dehalogenase 99.6 2.8E-14 6E-19 149.1 13.1 137 68-250 390-535 (1057)
48 TIGR01626 ytfJ_HI0045 conserve 99.6 2.6E-14 5.6E-19 121.9 10.6 133 69-251 23-180 (184)
49 cd03008 TryX_like_RdCVF Trypar 99.6 2.9E-14 6.3E-19 117.5 10.5 83 86-170 16-109 (146)
50 cd03009 TryX_like_TryX_NRX Try 99.5 3.6E-14 7.8E-19 113.2 8.6 71 80-152 3-76 (131)
51 PRK13728 conjugal transfer pro 99.5 1.1E-13 2.3E-18 117.8 11.8 105 70-234 50-156 (181)
52 cd02964 TryX_like_family Trypa 99.4 8.6E-13 1.9E-17 105.8 10.4 68 82-152 5-75 (132)
53 KOG0852 Alkyl hydroperoxide re 99.4 8.2E-12 1.8E-16 104.6 13.8 144 70-251 5-158 (196)
54 COG2077 Tpx Peroxiredoxin [Pos 99.3 8E-11 1.7E-15 96.5 12.9 139 68-242 17-157 (158)
55 PF13905 Thioredoxin_8: Thiore 99.2 9.5E-11 2E-15 88.1 10.7 64 97-160 1-66 (95)
56 TIGR02738 TrbB type-F conjugat 99.1 6.4E-10 1.4E-14 92.4 10.2 49 84-141 43-91 (153)
57 KOG0541 Alkyl hydroperoxide re 98.9 9E-09 2E-13 84.9 8.9 150 68-249 8-170 (171)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.8 7.8E-08 1.7E-12 81.2 12.3 100 71-172 28-137 (174)
59 COG0678 AHP1 Peroxiredoxin [Po 98.8 5.9E-08 1.3E-12 79.7 9.3 107 69-175 3-120 (165)
60 TIGR02740 TraF-like TraF-like 98.7 6.2E-08 1.4E-12 87.5 7.8 51 86-141 157-207 (271)
61 COG1999 Uncharacterized protei 98.6 6.4E-07 1.4E-11 77.9 11.1 140 77-251 49-201 (207)
62 COG0386 BtuE Glutathione perox 98.5 1.3E-06 2.7E-11 72.3 11.2 84 74-160 4-96 (162)
63 cd02950 TxlA TRX-like protein 98.5 6.3E-08 1.4E-12 79.1 3.3 84 79-164 2-88 (142)
64 KOG2501 Thioredoxin, nucleored 98.5 1.5E-07 3.3E-12 78.1 5.3 95 78-173 15-115 (157)
65 PF00255 GSHPx: Glutathione pe 98.4 1.1E-06 2.5E-11 68.9 8.4 80 77-159 3-91 (108)
66 cd02985 TRX_CDSP32 TRX family, 98.4 8E-07 1.7E-11 68.3 7.4 55 96-152 14-68 (103)
67 cd02951 SoxW SoxW family; SoxW 98.4 1.1E-06 2.3E-11 69.5 7.9 46 95-141 11-60 (125)
68 PF05988 DUF899: Bacterial pro 98.4 3.5E-06 7.5E-11 73.1 11.1 93 77-170 48-146 (211)
69 KOG1651 Glutathione peroxidase 98.3 8.2E-06 1.8E-10 68.2 11.5 87 71-159 10-105 (171)
70 cd02948 TRX_NDPK TRX domain, T 98.3 1.1E-06 2.5E-11 67.3 5.1 53 95-147 15-67 (102)
71 cd02999 PDI_a_ERp44_like PDIa 98.2 3.8E-06 8.2E-11 64.4 5.6 42 96-139 17-58 (100)
72 PF13098 Thioredoxin_2: Thiore 98.1 1.1E-05 2.4E-10 61.9 8.0 53 97-149 5-60 (112)
73 cd02963 TRX_DnaJ TRX domain, D 98.0 2.2E-05 4.8E-10 61.2 7.3 46 96-141 23-68 (111)
74 cd02993 PDI_a_APS_reductase PD 98.0 2.1E-05 4.5E-10 60.9 6.8 44 97-140 21-64 (109)
75 cd02956 ybbN ybbN protein fami 97.9 1.8E-05 4E-10 59.2 5.4 45 97-142 12-56 (96)
76 cd03000 PDI_a_TMX3 PDIa family 97.9 4E-05 8.7E-10 58.6 6.6 44 97-140 15-60 (104)
77 cd03005 PDI_a_ERp46 PDIa famil 97.8 1.6E-05 3.5E-10 59.8 3.4 46 96-142 16-63 (102)
78 cd02959 ERp19 Endoplasmic reti 97.8 3.3E-05 7.1E-10 61.1 5.2 71 96-167 18-91 (117)
79 COG4312 Uncharacterized protei 97.8 4.9E-05 1.1E-09 66.2 6.4 92 81-172 57-154 (247)
80 cd02953 DsbDgamma DsbD gamma f 97.8 7.5E-05 1.6E-09 56.9 6.8 66 95-161 9-81 (104)
81 PRK10996 thioredoxin 2; Provis 97.8 1.2E-05 2.5E-10 65.4 2.1 53 89-142 44-96 (139)
82 cd03003 PDI_a_ERdj5_N PDIa fam 97.8 4E-05 8.6E-10 58.1 4.9 58 95-156 16-74 (101)
83 PF00837 T4_deiodinase: Iodoth 97.8 0.00021 4.6E-09 63.2 10.1 61 68-128 72-133 (237)
84 cd03002 PDI_a_MPD1_like PDI fa 97.8 8.5E-05 1.9E-09 56.6 6.7 66 96-163 17-85 (109)
85 cd02949 TRX_NTR TRX domain, no 97.8 2.9E-05 6.2E-10 58.7 3.9 47 95-142 11-57 (97)
86 cd02962 TMX2 TMX2 family; comp 97.7 0.00012 2.6E-09 60.8 7.0 46 97-142 47-92 (152)
87 cd02997 PDI_a_PDIR PDIa family 97.7 3E-05 6.5E-10 58.4 3.0 64 92-156 12-77 (104)
88 PRK09381 trxA thioredoxin; Pro 97.7 5.4E-05 1.2E-09 58.1 4.4 47 96-143 20-66 (109)
89 cd03004 PDI_a_ERdj5_C PDIa fam 97.7 0.00017 3.6E-09 54.8 7.1 54 96-153 18-71 (104)
90 cd02998 PDI_a_ERp38 PDIa famil 97.7 8.2E-05 1.8E-09 55.9 5.2 44 97-140 18-62 (105)
91 cd03006 PDI_a_EFP1_N PDIa fami 97.7 0.00017 3.7E-09 56.8 7.1 47 95-142 27-73 (113)
92 TIGR01126 pdi_dom protein disu 97.7 6.5E-05 1.4E-09 56.1 4.4 67 95-164 11-81 (102)
93 cd02996 PDI_a_ERp44 PDIa famil 97.6 0.0001 2.2E-09 56.6 5.4 49 93-141 14-67 (108)
94 cd02995 PDI_a_PDI_a'_C PDIa fa 97.6 0.00021 4.5E-09 53.6 6.7 47 96-142 17-64 (104)
95 TIGR01295 PedC_BrcD bacterioci 97.6 9.6E-05 2.1E-09 58.9 4.8 58 94-154 20-85 (122)
96 PTZ00051 thioredoxin; Provisio 97.6 4.3E-05 9.3E-10 57.3 2.7 46 93-140 14-59 (98)
97 cd02994 PDI_a_TMX PDIa family, 97.6 0.00016 3.5E-09 54.5 5.6 42 100-141 19-60 (101)
98 cd02954 DIM1 Dim1 family; Dim1 97.5 0.00027 5.9E-09 56.0 6.7 45 97-142 14-58 (114)
99 cd02986 DLP Dim1 family, Dim1- 97.5 0.00026 5.6E-09 56.1 6.5 55 96-154 13-67 (114)
100 cd03001 PDI_a_P5 PDIa family, 97.5 0.00037 7.9E-09 52.4 7.2 45 96-141 17-61 (103)
101 cd02961 PDI_a_family Protein D 97.5 0.00012 2.6E-09 53.8 4.2 67 93-162 11-81 (101)
102 cd02992 PDI_a_QSOX PDIa family 97.5 0.00049 1.1E-08 53.9 7.4 57 97-154 19-77 (114)
103 cd02984 TRX_PICOT TRX domain, 97.5 0.00016 3.5E-09 53.9 4.4 43 97-140 14-56 (97)
104 TIGR01068 thioredoxin thioredo 97.4 0.00028 6E-09 52.3 5.1 53 97-153 14-66 (101)
105 cd02947 TRX_family TRX family; 97.4 0.0004 8.6E-09 49.8 5.4 43 96-140 9-51 (93)
106 PF00085 Thioredoxin: Thioredo 97.4 0.00077 1.7E-08 50.2 7.1 54 97-154 17-70 (103)
107 KOG2792 Putative cytochrome C 97.3 0.00085 1.8E-08 60.0 7.3 75 76-152 120-202 (280)
108 COG0526 TrxA Thiol-disulfide i 97.3 0.0014 3E-08 48.0 7.2 66 97-163 32-101 (127)
109 PLN00410 U5 snRNP protein, DIM 97.2 0.00075 1.6E-08 55.5 5.8 55 96-154 22-76 (142)
110 cd02952 TRP14_like Human TRX-r 97.2 0.00091 2E-08 53.4 5.6 44 97-141 21-71 (119)
111 PHA02278 thioredoxin-like prot 97.2 0.0015 3.2E-08 50.6 6.6 45 95-140 12-56 (103)
112 KOG0907 Thioredoxin [Posttrans 97.1 0.00093 2E-08 52.2 5.2 53 97-154 21-73 (106)
113 PF13728 TraF: F plasmid trans 97.1 0.0039 8.4E-08 54.6 9.6 47 89-140 114-160 (215)
114 cd02957 Phd_like Phosducin (Ph 97.0 0.0023 5E-08 49.7 6.4 50 98-153 25-74 (113)
115 cd01659 TRX_superfamily Thiore 97.0 0.002 4.3E-08 41.8 5.2 45 101-147 1-45 (69)
116 PRK00293 dipZ thiol:disulfide 97.0 0.0029 6.2E-08 63.0 8.5 41 97-139 474-517 (571)
117 cd02975 PfPDO_like_N Pyrococcu 97.0 0.0027 6E-08 49.6 6.6 53 96-153 21-73 (113)
118 PF13899 Thioredoxin_7: Thiore 96.9 0.0066 1.4E-07 44.4 8.2 64 97-161 17-82 (82)
119 TIGR00424 APS_reduc 5'-adenyly 96.9 0.0015 3.4E-08 63.3 6.0 46 96-141 370-415 (463)
120 PTZ00443 Thioredoxin domain-co 96.9 0.0023 4.9E-08 56.5 6.2 53 98-154 53-105 (224)
121 TIGR01130 ER_PDI_fam protein d 96.8 0.0011 2.5E-08 62.6 4.3 59 93-154 14-74 (462)
122 TIGR00411 redox_disulf_1 small 96.8 0.0029 6.3E-08 45.5 5.0 41 100-141 2-42 (82)
123 PF04592 SelP_N: Selenoprotein 96.8 0.019 4.1E-07 50.8 10.8 81 73-159 8-94 (238)
124 PLN02309 5'-adenylylsulfate re 96.7 0.0042 9E-08 60.2 6.9 44 96-139 364-407 (457)
125 cd03065 PDI_b_Calsequestrin_N 96.7 0.0042 9.1E-08 49.6 5.7 56 95-153 25-85 (120)
126 cd02989 Phd_like_TxnDC9 Phosdu 96.6 0.0036 7.9E-08 49.0 5.0 45 96-142 21-65 (113)
127 PTZ00102 disulphide isomerase; 96.5 0.0035 7.6E-08 60.0 5.1 69 95-164 373-443 (477)
128 PTZ00102 disulphide isomerase; 96.4 0.0046 9.9E-08 59.2 5.2 59 93-154 45-105 (477)
129 cd02965 HyaE HyaE family; HyaE 96.4 0.0055 1.2E-07 48.3 4.5 47 95-142 25-73 (111)
130 cd02955 SSP411 TRX domain, SSP 96.4 0.01 2.2E-07 47.6 6.1 69 96-165 14-93 (124)
131 KOG0910 Thioredoxin-like prote 96.4 0.0052 1.1E-07 50.8 4.5 54 97-154 61-114 (150)
132 TIGR02196 GlrX_YruB Glutaredox 96.3 0.02 4.4E-07 39.6 6.8 53 101-160 2-56 (74)
133 COG3118 Thioredoxin domain-con 96.0 0.013 2.9E-07 53.5 5.4 47 97-144 43-89 (304)
134 cd02982 PDI_b'_family Protein 95.8 0.015 3.2E-07 43.6 4.5 53 98-154 13-65 (103)
135 PF09695 YtfJ_HI0045: Bacteria 95.8 0.17 3.6E-06 42.4 10.8 139 70-252 2-159 (160)
136 TIGR02200 GlrX_actino Glutared 95.7 0.034 7.4E-07 39.2 5.9 51 101-158 2-55 (77)
137 cd02987 Phd_like_Phd Phosducin 95.6 0.036 7.7E-07 46.9 6.5 42 98-141 84-125 (175)
138 cd02973 TRX_GRX_like Thioredox 95.5 0.035 7.7E-07 38.5 5.2 51 101-156 3-54 (67)
139 TIGR01130 ER_PDI_fam protein d 95.4 0.031 6.7E-07 52.8 6.0 46 96-141 363-410 (462)
140 KOG0190 Protein disulfide isom 95.3 0.018 3.9E-07 56.2 4.0 65 89-156 34-101 (493)
141 TIGR00412 redox_disulf_2 small 95.3 0.044 9.6E-07 39.7 5.2 38 102-142 3-40 (76)
142 TIGR02190 GlrX-dom Glutaredoxi 94.9 0.1 2.2E-06 37.9 6.1 52 101-159 10-62 (79)
143 cd02979 PHOX_C FAD-dependent P 94.8 0.21 4.5E-06 41.9 8.7 52 72-123 1-55 (167)
144 TIGR02180 GRX_euk Glutaredoxin 94.7 0.13 2.7E-06 36.9 6.2 57 101-160 1-61 (84)
145 cd03026 AhpF_NTD_C TRX-GRX-lik 94.4 0.074 1.6E-06 39.9 4.5 45 91-139 8-52 (89)
146 PRK11200 grxA glutaredoxin 1; 94.4 0.2 4.4E-06 36.6 6.7 58 101-160 3-65 (85)
147 PTZ00062 glutaredoxin; Provisi 94.3 0.08 1.7E-06 46.1 5.1 40 98-139 18-57 (204)
148 TIGR02187 GlrX_arch Glutaredox 94.3 0.14 3E-06 44.3 6.6 53 96-153 132-184 (215)
149 cd02960 AGR Anterior Gradient 94.2 0.03 6.5E-07 45.4 2.1 72 96-169 22-96 (130)
150 PRK01655 spxA transcriptional 94.2 0.12 2.5E-06 41.7 5.5 66 101-173 2-71 (131)
151 PF05176 ATP-synt_10: ATP10 pr 94.1 1.1 2.5E-05 40.1 12.2 70 69-141 95-168 (252)
152 TIGR02187 GlrX_arch Glutaredox 94.0 0.11 2.4E-06 44.9 5.4 43 95-139 18-62 (215)
153 PHA02125 thioredoxin-like prot 93.9 0.11 2.4E-06 37.3 4.5 21 101-121 2-22 (75)
154 cd02976 NrdH NrdH-redoxin (Nrd 93.9 0.29 6.3E-06 33.5 6.6 55 101-162 2-58 (73)
155 PF00462 Glutaredoxin: Glutare 93.7 0.36 7.7E-06 32.8 6.6 53 101-160 1-56 (60)
156 cd02988 Phd_like_VIAF Phosduci 93.6 0.15 3.3E-06 43.8 5.5 40 98-139 103-142 (192)
157 TIGR00365 monothiol glutaredox 93.5 0.3 6.6E-06 37.1 6.5 58 95-160 10-74 (97)
158 PRK13703 conjugal pilus assemb 93.5 0.13 2.9E-06 46.0 5.0 46 90-140 138-183 (248)
159 PF07976 Phe_hydrox_dim: Pheno 93.4 0.074 1.6E-06 44.7 3.1 108 67-174 28-167 (169)
160 cd02958 UAS UAS family; UAS is 93.3 0.14 3.1E-06 39.5 4.5 64 96-161 16-85 (114)
161 cd03032 ArsC_Spx Arsenate Redu 93.3 0.25 5.5E-06 38.6 5.9 66 101-173 2-71 (115)
162 cd03036 ArsC_like Arsenate Red 93.2 0.21 4.6E-06 38.9 5.3 65 102-173 2-70 (111)
163 cd02977 ArsC_family Arsenate R 93.1 0.24 5.3E-06 37.8 5.4 65 101-172 1-69 (105)
164 PF06110 DUF953: Eukaryotic pr 93.0 0.33 7E-06 38.8 6.1 45 96-141 19-69 (119)
165 TIGR02739 TraF type-F conjugat 92.8 0.19 4.2E-06 45.2 5.1 41 96-140 150-190 (256)
166 TIGR02194 GlrX_NrdH Glutaredox 92.8 0.5 1.1E-05 33.4 6.3 53 101-160 1-54 (72)
167 smart00594 UAS UAS domain. 92.6 0.41 9E-06 37.6 6.3 66 96-163 26-97 (122)
168 PF14595 Thioredoxin_9: Thiore 92.6 0.13 2.7E-06 41.5 3.2 65 96-162 40-107 (129)
169 TIGR01617 arsC_related transcr 92.4 0.36 7.9E-06 37.8 5.6 64 102-172 2-69 (117)
170 PRK12559 transcriptional regul 92.2 0.5 1.1E-05 38.1 6.3 66 101-173 2-71 (131)
171 cd03418 GRX_GRXb_1_3_like Glut 92.1 1 2.2E-05 31.6 7.2 53 101-160 2-58 (75)
172 cd03028 GRX_PICOT_like Glutare 92.0 0.63 1.4E-05 34.7 6.3 60 93-160 4-70 (90)
173 PRK08294 phenol 2-monooxygenas 92.0 0.9 2E-05 45.8 9.2 56 68-123 462-520 (634)
174 cd02066 GRX_family Glutaredoxi 91.6 1 2.2E-05 30.5 6.6 52 101-159 2-55 (72)
175 PF13778 DUF4174: Domain of un 91.5 1.6 3.4E-05 34.5 8.4 51 90-140 3-53 (118)
176 PRK13344 spxA transcriptional 91.4 0.68 1.5E-05 37.4 6.3 66 101-173 2-71 (132)
177 cd03029 GRX_hybridPRX5 Glutare 91.3 0.96 2.1E-05 31.8 6.4 53 101-160 3-57 (72)
178 TIGR02189 GlrX-like_plant Glut 91.2 0.43 9.4E-06 36.4 4.7 57 95-160 6-68 (99)
179 TIGR02181 GRX_bact Glutaredoxi 91.0 0.7 1.5E-05 33.0 5.5 53 101-160 1-56 (79)
180 PRK10824 glutaredoxin-4; Provi 91.0 0.99 2.2E-05 35.7 6.7 57 98-161 15-78 (115)
181 PHA03050 glutaredoxin; Provisi 90.9 1 2.2E-05 35.1 6.7 58 101-160 15-76 (108)
182 cd03007 PDI_a_ERp29_N PDIa fam 90.8 0.49 1.1E-05 37.6 4.8 63 90-156 11-82 (116)
183 PRK10638 glutaredoxin 3; Provi 90.7 1.1 2.4E-05 32.5 6.4 53 101-160 4-59 (83)
184 PRK10329 glutaredoxin-like pro 90.6 1.5 3.2E-05 32.2 6.9 55 101-162 3-58 (81)
185 cd03027 GRX_DEP Glutaredoxin ( 90.2 1.9 4E-05 30.4 7.0 50 101-157 3-54 (73)
186 PF13462 Thioredoxin_4: Thiore 90.2 0.95 2.1E-05 36.3 6.2 50 87-138 4-54 (162)
187 KOG0908 Thioredoxin-like prote 90.1 0.51 1.1E-05 42.5 4.8 54 96-154 20-73 (288)
188 KOG0190 Protein disulfide isom 90.1 0.36 7.8E-06 47.3 4.2 43 96-139 383-425 (493)
189 TIGR02183 GRXA Glutaredoxin, G 90.1 0.74 1.6E-05 34.0 5.0 58 101-160 2-64 (86)
190 COG0695 GrxC Glutaredoxin and 89.5 1.2 2.7E-05 32.6 5.8 53 101-160 3-60 (80)
191 cd03419 GRX_GRXh_1_2_like Glut 89.4 1.8 3.8E-05 30.7 6.5 55 101-160 2-60 (82)
192 cd03023 DsbA_Com1_like DsbA fa 89.2 0.53 1.1E-05 37.2 3.9 39 96-136 4-42 (154)
193 KOG0191 Thioredoxin/protein di 89.0 0.75 1.6E-05 43.3 5.4 57 96-156 46-103 (383)
194 PRK08132 FAD-dependent oxidore 88.6 3.9 8.5E-05 40.1 10.3 36 67-103 425-460 (547)
195 cd03035 ArsC_Yffb Arsenate Red 88.4 1.5 3.2E-05 33.9 5.8 63 101-172 1-67 (105)
196 PRK06184 hypothetical protein; 88.3 4 8.6E-05 39.6 10.1 36 68-103 385-421 (502)
197 KOG1731 FAD-dependent sulfhydr 88.3 0.19 4.2E-06 49.7 0.9 61 96-157 56-119 (606)
198 PF05768 DUF836: Glutaredoxin- 86.3 1.8 4E-05 31.5 5.0 55 101-161 2-56 (81)
199 KOG0191 Thioredoxin/protein di 85.0 1.5 3.2E-05 41.3 4.9 57 98-154 163-220 (383)
200 KOG3425 Uncharacterized conser 84.9 1.6 3.5E-05 35.0 4.3 34 107-141 43-76 (128)
201 cd02991 UAS_ETEA UAS family, E 84.0 3.8 8.3E-05 32.2 6.2 66 96-163 16-87 (116)
202 COG2179 Predicted hydrolase of 82.3 3 6.5E-05 35.4 5.1 40 116-155 48-87 (175)
203 TIGR03759 conj_TIGR03759 integ 80.5 6.6 0.00014 34.1 6.7 57 96-158 108-165 (200)
204 PRK06183 mhpA 3-(3-hydroxyphen 78.9 18 0.00039 35.4 10.2 88 68-170 410-497 (538)
205 KOG1752 Glutaredoxin and relat 78.6 3.3 7.1E-05 32.2 3.9 34 98-139 14-47 (104)
206 COG1393 ArsC Arsenate reductas 78.6 4.6 0.0001 32.0 4.9 66 100-172 2-71 (117)
207 COG4232 Thiol:disulfide interc 78.4 1.8 3.9E-05 43.1 2.9 66 99-164 476-546 (569)
208 cd03034 ArsC_ArsC Arsenate Red 77.7 6.7 0.00014 30.4 5.5 66 101-173 1-70 (112)
209 KOG0912 Thiol-disulfide isomer 77.5 5.3 0.00012 37.1 5.5 33 97-129 13-45 (375)
210 PTZ00062 glutaredoxin; Provisi 77.0 3 6.5E-05 36.3 3.7 62 91-160 107-175 (204)
211 cd03020 DsbA_DsbC_DsbG DsbA fa 77.0 4.1 9E-05 34.4 4.5 26 96-121 76-101 (197)
212 TIGR00014 arsC arsenate reduct 76.3 8.1 0.00018 30.1 5.7 66 101-173 1-71 (114)
213 cd03019 DsbA_DsbA DsbA family, 75.1 4.4 9.6E-05 32.9 4.1 38 96-134 14-51 (178)
214 TIGR00995 3a0901s06TIC22 chlor 75.1 5 0.00011 36.5 4.6 86 69-162 76-161 (270)
215 cd03060 GST_N_Omega_like GST_N 74.0 3.9 8.5E-05 28.4 3.0 53 102-161 2-55 (71)
216 PRK10877 protein disulfide iso 74.0 6.9 0.00015 34.4 5.2 37 96-136 106-142 (232)
217 cd03041 GST_N_2GST_N GST_N fam 72.4 20 0.00043 25.3 6.5 53 101-161 2-57 (77)
218 PRK10026 arsenate reductase; P 69.5 15 0.00033 30.1 5.9 67 100-173 3-73 (141)
219 cd02972 DsbA_family DsbA famil 69.4 6.5 0.00014 27.8 3.4 36 101-137 1-36 (98)
220 PF03190 Thioredox_DsbH: Prote 67.3 13 0.00027 31.3 5.1 70 97-166 37-116 (163)
221 PF13192 Thioredoxin_3: Thiore 66.3 18 0.00039 25.7 5.2 31 106-139 7-37 (76)
222 PRK10853 putative reductase; P 65.1 17 0.00036 28.7 5.2 64 101-173 2-69 (118)
223 cd00570 GST_N_family Glutathio 61.7 9.9 0.00022 24.8 3.0 55 103-163 3-58 (71)
224 cd03061 GST_N_CLIC GST_N famil 59.0 12 0.00025 28.4 3.1 54 107-167 20-74 (91)
225 TIGR01662 HAD-SF-IIIA HAD-supe 58.9 37 0.00081 26.2 6.2 40 117-156 28-75 (132)
226 PF03960 ArsC: ArsC family; I 58.9 40 0.00086 25.7 6.3 58 106-170 3-64 (110)
227 cd03059 GST_N_SspA GST_N famil 58.0 11 0.00023 25.9 2.6 51 103-162 3-56 (73)
228 PRK13601 putative L7Ae-like ri 57.2 42 0.00091 24.8 5.8 51 123-174 17-71 (82)
229 COG1651 DsbG Protein-disulfide 56.9 24 0.00053 30.5 5.3 43 81-125 70-112 (244)
230 PRK11657 dsbG disulfide isomer 56.7 15 0.00032 32.8 3.9 38 96-136 116-153 (251)
231 PRK12759 bifunctional gluaredo 56.6 22 0.00047 34.0 5.3 41 101-148 4-44 (410)
232 cd03040 GST_N_mPGES2 GST_N fam 54.0 43 0.00092 23.2 5.3 51 102-161 3-54 (77)
233 PF06053 DUF929: Domain of unk 53.6 18 0.0004 32.4 4.0 38 92-129 53-90 (249)
234 PF00875 DNA_photolyase: DNA p 53.5 33 0.00071 27.9 5.3 66 96-162 24-97 (165)
235 COG3019 Predicted metal-bindin 51.0 47 0.001 27.4 5.6 51 98-158 25-75 (149)
236 PF04278 Tic22: Tic22-like fam 48.5 27 0.00059 31.7 4.3 85 70-162 70-161 (274)
237 PF01323 DSBA: DSBA-like thior 47.9 58 0.0013 26.6 6.0 40 101-140 2-41 (193)
238 cd01427 HAD_like Haloacid deha 47.2 39 0.00085 24.9 4.5 38 116-153 26-63 (139)
239 PF00702 Hydrolase: haloacid d 46.8 53 0.0011 27.0 5.6 44 117-160 130-174 (215)
240 PRK01018 50S ribosomal protein 45.9 78 0.0017 24.0 5.9 51 123-173 25-79 (99)
241 PRK13600 putative ribosomal pr 45.7 94 0.002 23.2 6.1 52 122-174 21-76 (84)
242 TIGR01485 SPP_plant-cyano sucr 44.8 36 0.00077 29.7 4.4 55 113-167 20-76 (249)
243 cd03033 ArsC_15kD Arsenate Red 44.3 65 0.0014 25.1 5.4 64 101-173 2-69 (113)
244 PF14968 CCDC84: Coiled coil p 43.7 5.1 0.00011 37.5 -1.1 48 105-155 57-104 (336)
245 cd03420 SirA_RHOD_Pry_redox Si 43.2 63 0.0014 22.6 4.7 53 103-159 3-57 (69)
246 PRK11031 guanosine pentaphosph 42.7 1.5E+02 0.0033 29.0 8.9 58 118-175 63-128 (496)
247 TIGR02174 CXXU_selWTH selT/sel 42.4 52 0.0011 23.4 4.2 35 214-251 38-72 (72)
248 cd03045 GST_N_Delta_Epsilon GS 42.4 27 0.00058 24.0 2.7 57 102-163 2-60 (74)
249 cd03037 GST_N_GRX2 GST_N famil 42.2 62 0.0014 22.0 4.6 48 104-161 4-54 (71)
250 cd03055 GST_N_Omega GST_N fami 41.4 31 0.00068 25.1 3.0 54 101-161 19-73 (89)
251 PF13419 HAD_2: Haloacid dehal 41.3 45 0.00097 26.1 4.2 35 120-154 83-117 (176)
252 COG3769 Predicted hydrolase (H 41.0 36 0.00077 30.5 3.7 46 121-166 30-76 (274)
253 PRK13602 putative ribosomal pr 40.1 1.3E+02 0.0028 22.1 6.1 53 122-175 19-75 (82)
254 cd03423 SirA SirA (also known 40.0 63 0.0014 22.6 4.3 55 102-160 2-58 (69)
255 cd03051 GST_N_GTT2_like GST_N 39.8 69 0.0015 21.5 4.5 54 102-160 2-57 (74)
256 TIGR01761 thiaz-red thiazoliny 39.7 45 0.00098 31.2 4.5 48 108-162 10-57 (343)
257 PRK10854 exopolyphosphatase; P 38.7 2E+02 0.0044 28.3 9.0 59 117-175 67-133 (513)
258 PF13417 GST_N_3: Glutathione 38.6 44 0.00096 23.3 3.4 53 104-163 2-55 (75)
259 PF12710 HAD: haloacid dehalog 38.3 42 0.00092 27.2 3.7 35 121-155 96-130 (192)
260 PF02966 DIM1: Mitosis protein 37.4 91 0.002 25.4 5.2 47 95-142 18-64 (133)
261 PTZ00106 60S ribosomal protein 37.4 1.2E+02 0.0026 23.6 5.8 50 124-173 35-88 (108)
262 cd00860 ThrRS_anticodon ThrRS 37.1 1.4E+02 0.0031 20.9 6.0 47 117-163 15-62 (91)
263 TIGR03706 exo_poly_only exopol 37.1 1.6E+02 0.0035 26.6 7.6 57 118-174 57-121 (300)
264 TIGR00591 phr2 photolyase PhrI 37.0 1.8E+02 0.004 27.9 8.3 63 97-160 53-120 (454)
265 TIGR03556 photolyase_8HDF deox 36.8 1.9E+02 0.0041 28.1 8.4 48 113-161 51-98 (471)
266 TIGR01689 EcbF-BcbF capsule bi 36.8 1.1E+02 0.0023 24.5 5.6 39 121-159 31-85 (126)
267 cd03031 GRX_GRX_like Glutaredo 36.2 1.4E+02 0.003 24.5 6.4 46 108-160 15-67 (147)
268 PF02514 CobN-Mg_chel: CobN/Ma 36.1 1.2E+02 0.0027 32.9 7.5 101 70-173 32-162 (1098)
269 PF04134 DUF393: Protein of un 36.0 58 0.0013 24.6 3.9 17 106-122 4-20 (114)
270 PHA03398 viral phosphatase sup 35.7 77 0.0017 29.4 5.2 52 117-168 151-204 (303)
271 TIGR03765 ICE_PFL_4695 integra 35.0 1.9E+02 0.0041 22.6 6.5 57 117-174 38-94 (105)
272 KOG3414 Component of the U4/U6 34.9 2.3E+02 0.005 23.1 7.1 56 96-155 22-77 (142)
273 COG0560 SerB Phosphoserine pho 34.8 67 0.0014 27.8 4.5 40 117-156 80-119 (212)
274 PF02541 Ppx-GppA: Ppx/GppA ph 34.6 81 0.0018 28.1 5.2 57 117-173 42-106 (285)
275 KOG4530 Predicted flavoprotein 34.4 49 0.0011 28.1 3.4 29 94-122 116-144 (199)
276 TIGR01684 viral_ppase viral ph 34.0 1.1E+02 0.0025 28.2 6.0 41 117-157 149-191 (301)
277 PF11072 DUF2859: Protein of u 33.2 2E+02 0.0043 23.7 6.7 57 117-174 76-132 (142)
278 PF11948 DUF3465: Protein of u 32.7 66 0.0014 26.1 3.7 31 210-241 89-119 (131)
279 TIGR01488 HAD-SF-IB Haloacid D 32.5 85 0.0018 25.1 4.6 37 118-154 77-113 (177)
280 TIGR01490 HAD-SF-IB-hyp1 HAD-s 32.5 1.2E+02 0.0025 25.1 5.5 35 120-154 93-127 (202)
281 PF05116 S6PP: Sucrose-6F-phos 32.1 99 0.0021 27.2 5.2 58 110-167 15-74 (247)
282 PF12017 Tnp_P_element: Transp 32.1 86 0.0019 27.9 4.8 39 116-154 195-233 (236)
283 cd01821 Rhamnogalacturan_acety 31.5 2.1E+02 0.0045 23.5 6.9 43 97-139 65-116 (198)
284 PRK00299 sulfur transfer prote 31.5 1.3E+02 0.0029 21.8 5.0 51 98-156 8-64 (81)
285 PRK10954 periplasmic protein d 31.5 52 0.0011 28.0 3.2 37 97-135 38-77 (207)
286 COG3054 Predicted transcriptio 31.0 86 0.0019 26.4 4.2 32 217-251 149-180 (184)
287 TIGR01428 HAD_type_II 2-haloal 31.0 1.5E+02 0.0032 24.5 5.9 40 117-156 95-136 (198)
288 PF10262 Rdx: Rdx family; Int 30.6 27 0.00058 25.1 1.1 35 214-251 40-74 (76)
289 cd00291 SirA_YedF_YeeD SirA, Y 30.6 1.5E+02 0.0032 20.2 4.9 32 129-160 25-58 (69)
290 cd03052 GST_N_GDAP1 GST_N fami 30.4 57 0.0012 22.8 2.8 57 102-163 2-60 (73)
291 TIGR02463 MPGP_rel mannosyl-3- 29.9 94 0.002 26.2 4.6 47 121-167 23-70 (221)
292 PRK06683 hypothetical protein; 29.9 2.1E+02 0.0046 21.0 5.9 52 123-175 20-75 (82)
293 cd03058 GST_N_Tau GST_N family 29.7 69 0.0015 22.0 3.1 54 103-163 3-58 (74)
294 PF09419 PGP_phosphatase: Mito 29.5 1E+02 0.0022 25.9 4.6 81 73-155 16-109 (168)
295 PF01408 GFO_IDH_MocA: Oxidore 29.2 1.5E+02 0.0031 22.2 5.2 35 129-165 24-58 (120)
296 TIGR02765 crypto_DASH cryptoch 29.2 1.3E+02 0.0028 28.6 5.8 47 115-162 59-105 (429)
297 PF13714 PEP_mutase: Phosphoen 28.5 3.3E+02 0.0072 24.0 7.9 75 100-174 138-216 (238)
298 PF02244 Propep_M14: Carboxype 28.3 70 0.0015 22.3 3.0 30 132-161 36-65 (74)
299 KOG0713 Molecular chaperone (D 28.3 22 0.00047 33.3 0.4 33 137-170 49-82 (336)
300 KOG2741 Dimeric dihydrodiol de 27.9 96 0.0021 29.3 4.5 44 111-154 13-56 (351)
301 PLN02954 phosphoserine phospha 27.5 1.2E+02 0.0027 25.4 4.9 39 117-155 87-125 (224)
302 PRK01158 phosphoglycolate phos 27.4 1.8E+02 0.0038 24.5 5.9 47 120-166 26-72 (230)
303 COG4615 PvdE ABC-type sideroph 27.1 1.8E+02 0.0039 28.6 6.2 47 93-141 463-510 (546)
304 PF04800 ETC_C1_NDUFA4: ETC co 26.9 70 0.0015 24.7 2.9 30 134-163 51-80 (101)
305 TIGR01616 nitro_assoc nitrogen 26.7 2E+02 0.0043 22.9 5.6 63 101-172 3-69 (126)
306 PF11360 DUF3110: Protein of u 26.7 1.8E+02 0.004 21.7 5.1 64 84-159 12-75 (86)
307 KOG1615 Phosphoserine phosphat 26.4 1.5E+02 0.0034 26.0 5.2 36 120-155 94-129 (227)
308 cd03053 GST_N_Phi GST_N family 26.4 76 0.0017 21.7 2.9 57 101-162 2-60 (76)
309 TIGR00338 serB phosphoserine p 25.9 1.1E+02 0.0025 25.5 4.4 36 119-154 90-125 (219)
310 cd05017 SIS_PGI_PMI_1 The memb 25.8 3E+02 0.0065 20.9 6.5 51 96-154 42-92 (119)
311 TIGR03143 AhpF_homolog putativ 25.7 97 0.0021 30.7 4.4 42 96-139 475-516 (555)
312 PF01297 TroA: Periplasmic sol 25.1 1.4E+02 0.0031 26.0 5.0 45 116-161 185-230 (256)
313 TIGR01491 HAD-SF-IB-PSPlk HAD- 25.0 1.4E+02 0.0031 24.3 4.8 35 120-154 86-120 (201)
314 cd01285 nucleoside_deaminase N 24.7 1.2E+02 0.0027 23.0 4.0 37 213-251 17-58 (109)
315 cd01284 Riboflavin_deaminase-r 24.7 1.1E+02 0.0024 23.9 3.8 38 213-251 19-56 (115)
316 TIGR01482 SPP-subfamily Sucros 24.7 2.1E+02 0.0046 23.8 5.9 38 123-160 24-61 (225)
317 cd00738 HGTP_anticodon HGTP an 24.7 2.1E+02 0.0046 20.1 5.1 46 116-161 17-63 (94)
318 PRK07714 hypothetical protein; 24.5 2.8E+02 0.0061 20.8 5.9 50 123-173 27-80 (100)
319 PF01206 TusA: Sulfurtransfera 24.3 2.4E+02 0.0052 19.3 5.7 55 102-160 3-59 (70)
320 PRK12702 mannosyl-3-phosphogly 23.9 1.3E+02 0.0029 27.8 4.6 46 121-166 25-70 (302)
321 PRK04175 rpl7ae 50S ribosomal 23.8 2.6E+02 0.0056 22.1 5.7 50 123-173 39-93 (122)
322 PRK09481 sspA stringent starva 23.7 1.1E+02 0.0024 25.7 3.9 62 100-168 10-72 (211)
323 PRK10200 putative racemase; Pr 23.7 1.5E+02 0.0033 25.9 4.8 43 115-159 60-103 (230)
324 PF08282 Hydrolase_3: haloacid 23.1 2.3E+02 0.005 23.4 5.8 44 121-164 22-65 (254)
325 COG4469 CoiA Competence protei 23.1 20 0.00044 33.5 -0.9 35 78-117 2-36 (342)
326 KOG0911 Glutaredoxin-related p 23.0 92 0.002 27.6 3.2 59 96-156 16-74 (227)
327 TIGR02471 sucr_syn_bact_C sucr 23.0 2.5E+02 0.0054 24.0 6.0 49 116-165 17-67 (236)
328 PRK01122 potassium-transportin 22.8 1.5E+02 0.0033 30.5 5.2 31 123-153 454-484 (679)
329 PRK14010 potassium-transportin 22.8 1.6E+02 0.0034 30.3 5.3 34 121-154 448-481 (673)
330 cd03056 GST_N_4 GST_N family, 22.7 1.1E+02 0.0023 20.5 3.1 55 103-162 3-59 (73)
331 PLN03098 LPA1 LOW PSII ACCUMUL 22.6 2.4E+02 0.0053 27.6 6.3 65 73-140 274-338 (453)
332 PRK10826 2-deoxyglucose-6-phos 22.5 2.2E+02 0.0048 23.9 5.6 36 119-154 97-132 (222)
333 smart00775 LNS2 LNS2 domain. T 22.5 3E+02 0.0065 22.4 6.1 50 117-166 30-88 (157)
334 cd01460 vWA_midasin VWA_Midasi 22.2 1E+02 0.0022 27.9 3.5 19 123-141 187-205 (266)
335 TIGR02949 anti_SigH_actin anti 22.2 94 0.002 22.8 2.7 23 107-129 37-59 (84)
336 PF03129 HGTP_anticodon: Antic 22.2 3E+02 0.0065 19.6 5.6 48 115-162 13-62 (94)
337 KOG4277 Uncharacterized conser 22.1 35 0.00076 31.9 0.5 31 98-128 44-74 (468)
338 COG1636 Uncharacterized protei 22.0 2.3E+02 0.0049 24.7 5.3 60 106-171 9-81 (204)
339 COG0561 Cof Predicted hydrolas 21.8 1.6E+02 0.0034 25.6 4.6 51 118-168 24-74 (264)
340 TIGR03351 PhnX-like phosphonat 21.6 2.3E+02 0.0049 23.7 5.4 36 119-154 92-127 (220)
341 cd00861 ProRS_anticodon_short 21.6 2.7E+02 0.0059 19.7 5.2 47 115-161 16-63 (94)
342 TIGR01511 ATPase-IB1_Cu copper 21.6 2E+02 0.0043 28.6 5.7 38 117-154 408-445 (562)
343 PF01248 Ribosomal_L7Ae: Ribos 21.6 1.8E+02 0.004 21.2 4.3 53 121-174 22-79 (95)
344 PF01583 APS_kinase: Adenylyls 21.4 2.5E+02 0.0055 23.2 5.4 58 113-170 57-117 (156)
345 PF10740 DUF2529: Protein of u 21.4 97 0.0021 26.3 2.9 79 72-162 60-145 (172)
346 TIGR01668 YqeG_hyp_ppase HAD s 21.4 3.4E+02 0.0073 22.1 6.3 38 117-154 46-84 (170)
347 PRK11869 2-oxoacid ferredoxin 21.2 88 0.0019 28.5 2.9 12 104-115 6-17 (280)
348 PLN02311 chalcone isomerase 21.1 2.1E+02 0.0045 26.1 5.2 90 1-91 1-93 (271)
349 TIGR01352 tonB_Cterm TonB fami 21.1 1.4E+02 0.0031 20.2 3.4 33 217-251 14-47 (74)
350 PHA00159 endonuclease I 21.0 1.4E+02 0.003 24.6 3.6 63 74-155 52-120 (148)
351 TIGR01449 PGP_bact 2-phosphogl 20.9 1.6E+02 0.0034 24.4 4.2 36 119-154 90-125 (213)
352 TIGR02461 osmo_MPG_phos mannos 20.9 2.8E+02 0.0061 23.8 6.0 40 120-159 21-60 (225)
353 TIGR00377 ant_ant_sig anti-ant 20.8 2.8E+02 0.0061 20.2 5.3 10 99-108 13-22 (108)
354 PF04914 DltD_C: DltD C-termin 20.8 2.2E+02 0.0048 22.8 4.9 26 114-139 33-58 (130)
355 PF08235 LNS2: LNS2 (Lipin/Ned 20.5 2.7E+02 0.0059 23.2 5.4 76 80-165 3-87 (157)
356 cd03025 DsbA_FrnE_like DsbA fa 20.5 1E+02 0.0022 25.2 3.0 33 101-134 3-35 (193)
357 PRK05778 2-oxoglutarate ferred 20.5 72 0.0016 29.4 2.2 26 104-130 16-41 (301)
358 KOG3110 Riboflavin kinase [Coe 20.4 38 0.00083 27.8 0.3 17 28-44 65-82 (153)
359 TIGR01487 SPP-like sucrose-pho 20.3 2.7E+02 0.0058 23.3 5.6 40 120-159 24-63 (215)
360 PF02153 PDH: Prephenate dehyd 20.3 95 0.002 27.5 2.8 56 88-150 115-170 (258)
361 PRK15126 thiamin pyrimidine py 20.1 2.9E+02 0.0063 24.1 6.0 46 121-166 26-71 (272)
362 PF03544 TonB_C: Gram-negative 20.1 2E+02 0.0044 19.7 4.1 34 217-251 20-53 (79)
363 PF01380 SIS: SIS domain SIS d 20.0 2.8E+02 0.006 20.8 5.2 44 117-163 67-110 (131)
No 1
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.5e-29 Score=209.59 Aligned_cols=151 Identities=17% Similarity=0.193 Sum_probs=130.3
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
.+++|+.||||+|+|.+|+.|+|+++. ++++||.||+..++|.|..|++++++.+++|++.|+.|++||+|++..+++|
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~-Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F 81 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLR-GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKF 81 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhc-CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHH
Confidence 468999999999999999999999995 4599999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCe
Q 025441 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 227 (252)
+++++++|+++||++++++++||+..... .++. . .....+++||||++ |+
T Consensus 82 ~~k~~L~f~LLSD~~~~v~~~ygv~~~k~-~~gk--------------------~--------~~~~~R~TfvId~d-G~ 131 (157)
T COG1225 82 AEKHGLTFPLLSDEDGEVAEAYGVWGEKK-MYGK--------------------E--------YMGIERSTFVIDPD-GK 131 (157)
T ss_pred HHHhCCCceeeECCcHHHHHHhCcccccc-cCcc--------------------c--------cccccceEEEECCC-Ce
Confidence 99999999999999999999999876421 0000 0 01246789999999 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 228 ISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 228 I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
|+|+|+...+.+| .+++|++|+
T Consensus 132 I~~~~~~v~~~~h--~~~vl~~l~ 153 (157)
T COG1225 132 IRYVWRKVKVKGH--ADEVLAALK 153 (157)
T ss_pred EEEEecCCCCccc--HHHHHHHHH
Confidence 9999966555555 558888775
No 2
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.96 E-value=1.3e-28 Score=199.15 Aligned_cols=149 Identities=32% Similarity=0.517 Sum_probs=122.8
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 74 ~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
.+|+|++.|.+|+.++++++.+++++||+|||++|||+|++|+++|+++++++++.|+++|+|+.++.+...+|.+++++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~~ 80 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKFL 80 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcCC
Confidence 47999999999999999998777899999999999999999999999999999999999999999999888899999999
Q ss_pred cceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEEe
Q 025441 154 KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 233 (252)
Q Consensus 154 ~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~ 233 (252)
+||+++|+++.+|++||+.........+....+ ... ....+. ..+++.++||+||||++ |+|+|.|+
T Consensus 81 ~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~----~~~~~~-~~~~~~~~p~~fvid~~-g~i~~~~~ 147 (149)
T cd02970 81 PFPVYADPDRKLYRALGLVRSLPWSNTPRALWK-------NAA----IGFRGN-DEGDGLQLPGVFVIGPD-GTILFAHV 147 (149)
T ss_pred CCeEEECCchhHHHHcCceecCcHHHHHHHHhh-------Ccc----cccccC-CCCcccccceEEEECCC-CeEEEEec
Confidence 999999999999999999765432222221111 111 111111 24556899999999998 69999998
Q ss_pred CC
Q 025441 234 DK 235 (252)
Q Consensus 234 ~~ 235 (252)
+.
T Consensus 148 ~~ 149 (149)
T cd02970 148 DR 149 (149)
T ss_pred CC
Confidence 63
No 3
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.95 E-value=6.9e-28 Score=202.45 Aligned_cols=190 Identities=36% Similarity=0.627 Sum_probs=152.9
Q ss_pred cCCCCCeeeeeeccCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHH
Q 025441 48 SPRRPSHVIASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD 127 (252)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~ 127 (252)
.|++|.+.+||..+.-... +..++...+ .|..|+.|++++||+++++||+|.|+++|..||+++++|.++.+-++
T Consensus 7 ~p~t~~~l~~s~i~pa~sg--p~~~q~~a~---l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld 81 (197)
T KOG4498|consen 7 APSTRLPLIASTIVPARSG--PMIGQLPAN---LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLD 81 (197)
T ss_pred CchhhhhHHHhhcccccCC--ccccccchh---hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHH
Confidence 3456667777774433322 233332223 67899999999999999999999999999999999999999999999
Q ss_pred hCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccc
Q 025441 128 ASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDT 207 (252)
Q Consensus 128 ~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~ 207 (252)
+.|+.+|+|.+++..+...|.++.++..+||.|+++.+|+.+++.+.......+..+...++++ ..++.|+
T Consensus 82 ~~Gv~Li~vg~g~~~~~~~f~~q~~f~gevylD~~~~~Y~~le~k~~~~g~l~~g~~~~~~Ka~--------~~gv~gn- 152 (197)
T KOG4498|consen 82 ELGVVLIAVGPGSHVQFEDFWDQTYFSGEVYLDPHRGFYKPLEFKRAEMGFLRPGTDAAAVKAK--------AVGVEGN- 152 (197)
T ss_pred HhCCEEEEEeccceeecchhhcccCcceeEEEcCccceechhhhhcccccccccccHHHHHHHh--------hcccCCC-
Confidence 9999999999999999999999999999999999999999999987543222233222223333 2344554
Q ss_pred cCCCccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 208 VSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 208 ~~g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
++++.+|+||.+++.+|+ +|.|.|++++++||+++++|+++++.
T Consensus 153 ~~gd~~~~gG~~~V~~G~-~il~~h~dk~~gD~~~i~~Vl~v~~~ 196 (197)
T KOG4498|consen 153 LEGDGLLSGGVLVVGRGK-KILFIHVDKETGDHVPIDSVLQVVGK 196 (197)
T ss_pred cccChHHhCCeEEEecCC-eEEEEEecCCCCCCcCHHHHHHHhhc
Confidence 578889999999999984 99999999999999999999999863
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.93 E-value=6.1e-25 Score=178.51 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=127.8
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~ 149 (252)
++|+.+|+|++.|.+|+.++++++.+++++||+|||+.||+.|..++++|+++++++++.|+++|+|+.++.+.+++|++
T Consensus 2 ~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~ 81 (149)
T cd03018 2 EVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAE 81 (149)
T ss_pred CCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHH
Confidence 67999999999999999999999854478888999999999999999999999999999999999999999999999999
Q ss_pred HcCCcceeeecCC--hHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCe
Q 025441 150 QTKFKGEVYADPN--HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 150 ~~~l~fpllsDp~--~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 227 (252)
+++++|++++|++ +++++.||+..... +...+.+||||++ |+
T Consensus 82 ~~~~~~~~~~D~~~~~~~~~~~g~~~~~~-----------------------------------~~~~~~~~lid~~-G~ 125 (149)
T cd03018 82 ENGLTFPLLSDFWPHGEVAKAYGVFDEDL-----------------------------------GVAERAVFVIDRD-GI 125 (149)
T ss_pred hcCCCceEecCCCchhHHHHHhCCccccC-----------------------------------CCccceEEEECCC-CE
Confidence 9999999999988 99999998763210 1124579999998 69
Q ss_pred EEEEEeCCC--CCCCCCHHHHHHH
Q 025441 228 ISYIHRDKE--AGDDPDIQDILKA 249 (252)
Q Consensus 228 I~~~h~~~~--~~D~~~~~eIL~a 249 (252)
|+|.|...+ ..+.|+++++++|
T Consensus 126 v~~~~~~~~~~~~~~~~~~~~~~~ 149 (149)
T cd03018 126 IRYAWVSDDGEPRDLPDYDEALDA 149 (149)
T ss_pred EEEEEecCCcccccchhHHHHhhC
Confidence 999999999 8999999988875
No 5
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.92 E-value=1.9e-24 Score=188.46 Aligned_cols=147 Identities=14% Similarity=0.106 Sum_probs=123.7
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~ 148 (252)
+.+|+.+|+|++.+.+|+ +.+.+.++++++||+|||+.|||.|..|+++|++.+++|++.|++||+||.|+....++|.
T Consensus 7 ~~iG~~aPdF~l~~~~G~-~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~ 85 (215)
T PRK13191 7 PLIGEKFPEMEVITTHGK-IKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWV 85 (215)
T ss_pred ccCCCcCCCCEeecCCCC-EEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHH
Confidence 578999999999999986 6666644667888899999999999999999999999999999999999999998777765
Q ss_pred H------HcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 149 E------QTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 ~------~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
+ ..+++||+++|+++++.++||+..... .+..++++||||
T Consensus 86 ~~~~~~~~~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 131 (215)
T PRK13191 86 MWIEKNLKVEVPFPIIADPMGNVAKRLGMIHAES----------------------------------STATVRAVFIVD 131 (215)
T ss_pred hhHHHhcCCCCceEEEECCchHHHHHcCCccccc----------------------------------CCceeEEEEEEC
Confidence 4 246899999999999999999853210 012478999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 223 PGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
++ |+|++.++......+ +++|||+++++
T Consensus 132 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~a 159 (215)
T PRK13191 132 DK-GTVRLILYYPMEIGR-NIDEILRAIRA 159 (215)
T ss_pred CC-CEEEEEEecCCCCCC-CHHHHHHHHHH
Confidence 99 699999988766655 99999998863
No 6
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.92 E-value=1.5e-24 Score=185.04 Aligned_cols=144 Identities=16% Similarity=0.199 Sum_probs=122.8
Q ss_pred cccCCCCCcEEec-CCCC--eEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHH
Q 025441 70 DTKNLLDTVKVYD-VNGN--AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~apdf~L~d-~~G~--~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~ 146 (252)
.+|+.+|+|++.+ .+|+ .++++++ +++++||.|||+.|||.|+.|+++|++.+++|++.|++||+||.|+.+.+++
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~-~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~ 81 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDV-KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKA 81 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHH-CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHH
Confidence 5699999999998 5776 6777787 5668888888899999999999999999999999999999999999988888
Q ss_pred HHHHc----CCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 147 FSEQT----KFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 147 f~~~~----~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
|++.. +++||+++|++.++.++||+..... +...+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~~a~~~gv~~~~~-----------------------------------g~~~p~tfiID 126 (187)
T TIGR03137 82 WHDTSEAIGKITYPMLGDPTGVLTRNFGVLIEEA-----------------------------------GLADRGTFVID 126 (187)
T ss_pred HHhhhhhccCcceeEEECCccHHHHHhCCcccCC-----------------------------------CceeeEEEEEC
Confidence 87654 6899999999999999999863210 11357899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
++ |+|+|.|+...+..+ +.++||++++
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~~ll~~l~ 153 (187)
T TIGR03137 127 PE-GVIQAVEITDNGIGR-DASELLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 98 699999998766666 8999999875
No 7
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.92 E-value=2.9e-24 Score=180.03 Aligned_cols=147 Identities=12% Similarity=0.131 Sum_probs=123.9
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCC-CHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFG-CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~-Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
..+|+.+|+|++.|.+|+.++++++ ++++ +|++||+.| ||+|+.|+++|++.++++ .|++||+||.|++..+++|
T Consensus 18 ~~~G~~~P~f~l~~~~g~~v~l~~~-~Gk~-vvl~f~~s~~cp~C~~e~~~l~~~~~~~--~~~~vv~vs~D~~~~~~~f 93 (167)
T PRK00522 18 PQVGDKAPDFTLVANDLSDVSLADF-AGKR-KVLNIFPSIDTGVCATSVRKFNQEAAEL--DNTVVLCISADLPFAQKRF 93 (167)
T ss_pred CCCCCCCCCeEEEcCCCcEEehHHh-CCCE-EEEEEEcCCCCCccHHHHHHHHHHHHHc--CCcEEEEEeCCCHHHHHHH
Confidence 4789999999999999999999998 4444 555555555 999999999999999988 3999999999999889999
Q ss_pred HHHcCCc-ceeeec-CChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCC
Q 025441 148 SEQTKFK-GEVYAD-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 148 ~~~~~l~-fpllsD-p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 225 (252)
.++++++ +++++| +++.+.++||+..... + ..++..+++||||++
T Consensus 94 ~~~~~~~~~~~lsD~~~~~~~~~~gv~~~~~----~----------------------------~~g~~~r~tfvId~~- 140 (167)
T PRK00522 94 CGAEGLENVITLSDFRDHSFGKAYGVAIAEG----P----------------------------LKGLLARAVFVLDEN- 140 (167)
T ss_pred HHhCCCCCceEeecCCccHHHHHhCCeeccc----c----------------------------cCCceeeEEEEECCC-
Confidence 9999998 799999 5669999999763210 0 012346789999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 226 SNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 226 g~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
|+|+|.|+..+..+.++++++|+++++
T Consensus 141 G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 141 NKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred CeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 699999998899999999999999974
No 8
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.92 E-value=2.6e-24 Score=185.80 Aligned_cols=145 Identities=14% Similarity=0.164 Sum_probs=122.2
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~ 150 (252)
+|+.+|+|++.+.+| .++++++.+++++||+|||+.|||.|+.|+++|++++++|++.|++||+||.|+.+..++|.+.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~ 79 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIED 79 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhh
Confidence 489999999999887 5899998544678899999999999999999999999999999999999999998877777765
Q ss_pred ------cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCC
Q 025441 151 ------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPG 224 (252)
Q Consensus 151 ------~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~g 224 (252)
.+++||+++|+++.++++||+..... +.....+++||||++
T Consensus 80 i~~~~~~~~~fpil~D~~~~ia~~yg~~~~~~---------------------------------~~~~~~r~~fiID~~ 126 (203)
T cd03016 80 IEEYTGVEIPFPIIADPDREVAKLLGMIDPDA---------------------------------GSTLTVRAVFIIDPD 126 (203)
T ss_pred HHHhcCCCCceeEEECchHHHHHHcCCccccC---------------------------------CCCceeeEEEEECCC
Confidence 68999999999999999999863210 001246799999998
Q ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 225 KSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 225 gg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
|+|++.|+......+ +.++++++++
T Consensus 127 -G~I~~~~~~~~~~gr-~~~ell~~l~ 151 (203)
T cd03016 127 -KKIRLILYYPATTGR-NFDEILRVVD 151 (203)
T ss_pred -CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 699999987544443 6899988875
No 9
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.92 E-value=4.2e-24 Score=186.36 Aligned_cols=146 Identities=14% Similarity=0.064 Sum_probs=122.5
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~ 149 (252)
..|+.+|+|++.+.+|+.+.++++ +++++||+|||+.|||.|..|++.|++++++|++.|++||+||.|+.+..++|.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~-~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~ 81 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDY-AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVE 81 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHH-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHH
Confidence 689999999999999987777776 5668889999999999999999999999999999999999999999877776654
Q ss_pred ------HcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeC
Q 025441 150 ------QTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 150 ------~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 223 (252)
..+++||+++|+++++.++||+..... +....+++||||+
T Consensus 82 ~i~~~~~~~i~fPil~D~~~~va~~yg~~~~~~----------------------------------~~~~~R~tfIID~ 127 (215)
T PRK13599 82 WIKDNTNIAIPFPVIADDLGKVSNQLGMIHPGK----------------------------------GTNTVRAVFIVDD 127 (215)
T ss_pred hHHHhcCCCCceeEEECCCchHHHHcCCCccCC----------------------------------CCceeeEEEEECC
Confidence 347899999999999999999753210 0013679999999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 224 GKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 224 ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
+ |+|++.++.....+ ..+++||+++++
T Consensus 128 d-G~Ir~~~~~p~~~g-r~~~eilr~l~~ 154 (215)
T PRK13599 128 K-GTIRLIMYYPQEVG-RNVDEILRALKA 154 (215)
T ss_pred C-CEEEEEEEcCCCCC-CCHHHHHHHHHH
Confidence 9 69999998654444 489999998863
No 10
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.92 E-value=4e-24 Score=191.17 Aligned_cols=148 Identities=12% Similarity=0.161 Sum_probs=125.6
Q ss_pred CCCccccCCCCCcEEec-CCC--CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 66 SVSEDTKNLLDTVKVYD-VNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 66 ~~~~~~g~~apdf~L~d-~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
.....+|+.+|+|++.+ .+| +.++++++.+++++||+|||+.|||.|..|+++|++.+++|++.|++||+||.|++.
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~ 144 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPF 144 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 34468999999999987 455 468999987778999999999999999999999999999999999999999999987
Q ss_pred HHHHHHHH-------cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCcccc
Q 025441 143 QARTFSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQ 215 (252)
Q Consensus 143 ~~~~f~~~-------~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~ 215 (252)
..++|.+. .+++||+++|+++++.++||+.... +..+
T Consensus 145 ~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iakayGv~~~~------------------------------------g~a~ 188 (261)
T PTZ00137 145 SHKAWKELDVRQGGVSPLKFPLFSDISREVSKSFGLLRDE------------------------------------GFSH 188 (261)
T ss_pred HHHHHHhhhhhhccccCcceEEEEcCChHHHHHcCCCCcC------------------------------------Ccee
Confidence 78888763 5799999999999999999975320 1246
Q ss_pred ceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 216 GGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 216 gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+++||||++ |+|+|.+.......+ +++|||++++
T Consensus 189 R~tFIID~d-G~I~~~~~~~~~~gr-~v~eiLr~l~ 222 (261)
T PTZ00137 189 RASVLVDKA-GVVKHVAVYDLGLGR-SVDETLRLFD 222 (261)
T ss_pred cEEEEECCC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 799999998 699999976544444 8999999875
No 11
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.92 E-value=5.3e-24 Score=183.85 Aligned_cols=144 Identities=14% Similarity=0.143 Sum_probs=121.1
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~ 148 (252)
..+|+.+|+|++.+.+| .++++++ +++++||+|||+.|||.|+.|+++|++.+++|++.|++||+||.|+.+..++|.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~-~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~ 79 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKY-KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWL 79 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHh-CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 46899999999999887 7999997 566788889999999999999999999999999999999999999987655554
Q ss_pred ----HHcC--CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 149 ----EQTK--FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 ----~~~~--l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
++++ ++||+++|++++++++||+..... +..++++||||
T Consensus 80 ~~~~~~~g~~~~fPll~D~~~~ia~~ygv~~~~~-----------------------------------g~~~p~~fiId 124 (202)
T PRK13190 80 RDIEERFGIKIPFPVIADIDKELAREYNLIDENS-----------------------------------GATVRGVFIID 124 (202)
T ss_pred HhHHHhcCCCceEEEEECCChHHHHHcCCccccC-----------------------------------CcEEeEEEEEC
Confidence 4555 689999999999999999853210 12368999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
++ |+|+|.+....... .+++|+|++++
T Consensus 125 ~~-G~I~~~~~~~~~~g-r~~~ellr~l~ 151 (202)
T PRK13190 125 PN-QIVRWMIYYPAETG-RNIDEIIRITK 151 (202)
T ss_pred CC-CEEEEEEEeCCCCC-CCHHHHHHHHH
Confidence 99 69999998765554 48999998875
No 12
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.91 E-value=9.9e-24 Score=170.85 Aligned_cols=141 Identities=13% Similarity=0.203 Sum_probs=121.0
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~ 149 (252)
++|+.+|+|++.|.+|+.++|+++ .++++||.|++..|||+|+.|++.|+++++++ .|+.+|+|+.++.+.+++|.+
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~-~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~--~~~~vi~Is~d~~~~~~~~~~ 77 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADF-AGKVKVISVFPSIDTPVCATQTKRFNKEAAKL--DNTVVLTISADLPFAQKRWCG 77 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHh-CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhc--CCCEEEEEECCCHHHHHHHHH
Confidence 368999999999999999999998 45666666666666899999999999999987 499999999999988999999
Q ss_pred HcCC-cceeeecCC-hHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCe
Q 025441 150 QTKF-KGEVYADPN-HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 150 ~~~l-~fpllsDp~-~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 227 (252)
++++ +|++++|++ +++.++||+..... +...+++||||++ |+
T Consensus 78 ~~~~~~~~~l~D~~~~~~~~~~gv~~~~~-----------------------------------~~~~~~~~iid~~-G~ 121 (143)
T cd03014 78 AEGVDNVTTLSDFRDHSFGKAYGVLIKDL-----------------------------------GLLARAVFVIDEN-GK 121 (143)
T ss_pred hcCCCCceEeecCcccHHHHHhCCeeccC-----------------------------------CccceEEEEEcCC-Ce
Confidence 9997 799999996 99999999753210 1235689999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHH
Q 025441 228 ISYIHRDKEAGDDPDIQDILKA 249 (252)
Q Consensus 228 I~~~h~~~~~~D~~~~~eIL~a 249 (252)
|+|.|+..+..+.|+++++|++
T Consensus 122 I~~~~~~~~~~~~~~~~~~~~~ 143 (143)
T cd03014 122 VIYVELVPEITDEPDYEAALAA 143 (143)
T ss_pred EEEEEECCCcccCCCHHHHhhC
Confidence 9999999999999999999864
No 13
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.91 E-value=1.4e-23 Score=179.51 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=122.3
Q ss_pred cccCCCCCcEEec---CCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHH
Q 025441 70 DTKNLLDTVKVYD---VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~apdf~L~d---~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~ 146 (252)
.+|.++|+|++.- .+...++|+++ .++++||.||++.|||.|..|+++|++.+++|++.|++||+||.|+...+++
T Consensus 3 ~~~~~~p~f~~~~~~~g~~~~v~L~d~-~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a 81 (187)
T PRK10382 3 LINTKIKPFKNQAFKNGEFIEVTEKDT-EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKA 81 (187)
T ss_pred ccCCcCCCcEEEEEeCCcceEEEHHHh-CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHH
Confidence 5799999999765 34457788887 4568999999999999999999999999999999999999999999999999
Q ss_pred HHHH----cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 147 FSEQ----TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 147 f~~~----~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
|.+. .+++||+++|+++++.++||+..... ++..+++||||
T Consensus 82 ~~~~~~~~~~l~fpllsD~~~~ia~~ygv~~~~~-----------------------------------g~~~r~tfIID 126 (187)
T PRK10382 82 WHSSSETIAKIKYAMIGDPTGALTRNFDNMREDE-----------------------------------GLADRATFVVD 126 (187)
T ss_pred HHHhhccccCCceeEEEcCchHHHHHcCCCcccC-----------------------------------CceeeEEEEEC
Confidence 9976 37999999999999999999853210 12357899999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
++ |+|+|.|+.....++ +++|+|++|+
T Consensus 127 ~~-G~I~~~~~~~~~~~~-~~~eil~~l~ 153 (187)
T PRK10382 127 PQ-GIIQAIEVTAEGIGR-DASDLLRKIK 153 (187)
T ss_pred CC-CEEEEEEEeCCCCCC-CHHHHHHHHH
Confidence 99 699999997655554 8999999875
No 14
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.91 E-value=8.6e-24 Score=175.39 Aligned_cols=137 Identities=18% Similarity=0.257 Sum_probs=118.9
Q ss_pred ccCCCCCcEEecCC---CCeEeCCCccCCCeEEEEEEcCCCCHhhHHH-HHHHHHhHHHHHhCCC-EEEEEecCCHHHHH
Q 025441 71 TKNLLDTVKVYDVN---GNAIPISDLWKDRKAVVAFARHFGCVLCRKR-ADYLAAKKDVMDASGV-ALVLIGPGSVEQAR 145 (252)
Q Consensus 71 ~g~~apdf~L~d~~---G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~e-l~~L~~~~~~~~~~Gv-~vVaVs~d~~~~~~ 145 (252)
+|+.+|+|++.+.+ |+.++|+++++++++||+||++.|||.|..| ++.|++.+++|++.|+ .|++||.|++..++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~ 80 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMK 80 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHH
Confidence 58999999999985 9999999965678999999999999999999 9999999999999999 69999999999999
Q ss_pred HHHHHcCC--cceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeC
Q 025441 146 TFSEQTKF--KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 146 ~f~~~~~l--~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 223 (252)
+|++++++ +|++++|+++++.++||+..... + .| .+.+..+++||||
T Consensus 81 ~~~~~~~~~~~f~lLsD~~~~~~~~ygv~~~~~----~-----------~~---------------~~~~~~R~~fiId- 129 (155)
T cd03013 81 AWGKALGAKDKIRFLADGNGEFTKALGLTLDLS----A-----------AG---------------GGIRSKRYALIVD- 129 (155)
T ss_pred HHHHhhCCCCcEEEEECCCHHHHHHcCCCcccc----c-----------cC---------------CcceeeeEEEEEC-
Confidence 99999998 89999999999999999875421 0 00 0113467899999
Q ss_pred CCCeEEEEEeCCCCCC
Q 025441 224 GKSNISYIHRDKEAGD 239 (252)
Q Consensus 224 ggg~I~~~h~~~~~~D 239 (252)
+ |+|+|.|+..++.+
T Consensus 130 ~-g~I~~~~~~~~~~~ 144 (155)
T cd03013 130 D-GKVKYLFVEEDPGD 144 (155)
T ss_pred C-CEEEEEEEecCCCC
Confidence 5 69999999877643
No 15
>PRK13189 peroxiredoxin; Provisional
Probab=99.91 E-value=2.1e-23 Score=182.78 Aligned_cols=146 Identities=14% Similarity=0.105 Sum_probs=122.9
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~ 148 (252)
..+|+.+|+|++.+.+|+ +++++.++++++||+|||+.|||.|..|+.+|++.+++|++.|++||+||.|+.....+|.
T Consensus 9 ~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~ 87 (222)
T PRK13189 9 PLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWV 87 (222)
T ss_pred ccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 468999999999999885 7888766677899999999999999999999999999999999999999999998777776
Q ss_pred HH------cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 149 EQ------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 149 ~~------~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
+. .+++||+++|+++++.++||+..... ++...+++||||
T Consensus 88 ~~~~~~~g~~i~fPllsD~~~~ia~~ygv~~~~~----------------------------------~~~~~r~tfIID 133 (222)
T PRK13189 88 EWIKEKLGVEIEFPIIADDRGEIAKKLGMISPGK----------------------------------GTNTVRAVFIID 133 (222)
T ss_pred HhHHHhcCcCcceeEEEcCccHHHHHhCCCcccc----------------------------------CCCceeEEEEEC
Confidence 54 35899999999999999999753210 001467999999
Q ss_pred CCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 223 PGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 223 ~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
++ |+|++.++......+ ..+|+|++++
T Consensus 134 ~~-G~Ir~~~~~~~~~gr-~~~eilr~l~ 160 (222)
T PRK13189 134 PK-GIIRAILYYPQEVGR-NMDEILRLVK 160 (222)
T ss_pred CC-CeEEEEEecCCCCCC-CHHHHHHHHH
Confidence 99 699999987665555 6889988875
No 16
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.91 E-value=1.5e-23 Score=164.67 Aligned_cols=124 Identities=19% Similarity=0.302 Sum_probs=112.6
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~ 150 (252)
+|+++|+|++.|.+|+.++++++ +++++||.||+..|||.|+.++++|+++++++++.|+++|+|+.++.+.+++|.++
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l-~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~ 79 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDL-KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEE 79 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGG-TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHH-CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhh
Confidence 59999999999999999999999 66788888877779999999999999999999999999999999999999999999
Q ss_pred cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEE
Q 025441 151 TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISY 230 (252)
Q Consensus 151 ~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~ 230 (252)
++++|++++|++..+.++||+.... ...+.|++||||++ |+|+|
T Consensus 80 ~~~~~~~~~D~~~~~~~~~~~~~~~-----------------------------------~~~~~p~~~lid~~-g~I~~ 123 (124)
T PF00578_consen 80 YGLPFPVLSDPDGELAKAFGIEDEK-----------------------------------DTLALPAVFLIDPD-GKIRY 123 (124)
T ss_dssp HTCSSEEEEETTSHHHHHTTCEETT-----------------------------------TSEESEEEEEEETT-SBEEE
T ss_pred hccccccccCcchHHHHHcCCcccc-----------------------------------CCceEeEEEEECCC-CEEEe
Confidence 9999999999999999999986442 01357899999998 69998
Q ss_pred E
Q 025441 231 I 231 (252)
Q Consensus 231 ~ 231 (252)
.
T Consensus 124 ~ 124 (124)
T PF00578_consen 124 A 124 (124)
T ss_dssp E
T ss_pred C
Confidence 5
No 17
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.91 E-value=3.5e-23 Score=173.84 Aligned_cols=143 Identities=14% Similarity=0.127 Sum_probs=121.4
Q ss_pred ccCCCCCcEEecCCC----CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHH
Q 025441 71 TKNLLDTVKVYDVNG----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 71 ~g~~apdf~L~d~~G----~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~ 146 (252)
+|+.+|+|++.+.+| +.++|+++ +++++||.|+++.|||.|..++++|++++++|++.|++||+|+.|+.+..++
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~-~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~ 79 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDY-KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLA 79 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHh-CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHH
Confidence 589999999999887 79999998 4567888888899999999999999999999999999999999998877777
Q ss_pred HHHH-------cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEE
Q 025441 147 FSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 219 (252)
Q Consensus 147 f~~~-------~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~f 219 (252)
|.+. .+++|++++|++.+++++||+..... ++.++.+|
T Consensus 80 ~~~~~~~~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~-----------------------------------~~~~p~~~ 124 (173)
T cd03015 80 WRNTPRKEGGLGKINFPLLADPKKKISRDYGVLDEEE-----------------------------------GVALRGTF 124 (173)
T ss_pred HHHhhhhhCCccCcceeEEECCchhHHHHhCCccccC-----------------------------------CceeeEEE
Confidence 8765 46899999999999999999764310 12356899
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 220 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 220 Vid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
|||++ |+|+|.|+...+.+ ++.++||++|+
T Consensus 125 lID~~-G~I~~~~~~~~~~~-~~~~~il~~l~ 154 (173)
T cd03015 125 IIDPE-GIIRHITVNDLPVG-RSVDETLRVLD 154 (173)
T ss_pred EECCC-CeEEEEEecCCCCC-CCHHHHHHHHH
Confidence 99998 69999999876654 47889998875
No 18
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.91 E-value=7e-23 Score=168.17 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=126.5
Q ss_pred CCCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHH
Q 025441 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (252)
Q Consensus 66 ~~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~ 145 (252)
|+..+.|+.+|+|++.|.+|+.++++++ +++++||.|++..|||.|+.+++.|++.++++++.|+++|+|+.|+.+.++
T Consensus 1 ~~~~~~g~~~p~f~l~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 1 MNPLKAGDIAPKFSLPDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred CCcCCCCCcCCCcEeeCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 3457889999999999999999999997 556666666556799999999999999999999999999999999999999
Q ss_pred HHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCC
Q 025441 146 TFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 146 ~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 225 (252)
+|+++++++|++++|++..++++||+..... . . + .... ...+.+||||++
T Consensus 80 ~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~~--~------------~-~------~~~~--------~~~~~~~lid~~- 129 (154)
T PRK09437 80 RFAEKELLNFTLLSDEDHQVAEQFGVWGEKK--F------------M-G------KTYD--------GIHRISFLIDAD- 129 (154)
T ss_pred HHHHHhCCCCeEEECCCchHHHHhCCCcccc--c------------c-c------cccc--------CcceEEEEECCC-
Confidence 9999999999999999999999999853211 0 0 0 0000 123578999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 226 SNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 226 g~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
|+|++.|.+..+.++ .+++|++++.
T Consensus 130 G~i~~~~~g~~~~~~--~~~~~~~~~~ 154 (154)
T PRK09437 130 GKIEHVFDKFKTSNH--HDVVLDYLKE 154 (154)
T ss_pred CEEEEEEcCCCcchh--HHHHHHHHhC
Confidence 699999998666654 7899998863
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.90 E-value=4.4e-23 Score=167.40 Aligned_cols=143 Identities=20% Similarity=0.314 Sum_probs=117.9
Q ss_pred cccCCCCCcEEec--CCCCeEeCCCccCCCeEEEEEEcCC-CCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHH
Q 025441 70 DTKNLLDTVKVYD--VNGNAIPISDLWKDRKAVVAFARHF-GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~apdf~L~d--~~G~~v~ls~l~~~~~vVLvF~R~~-~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~ 146 (252)
++|+.+|+|++.+ .+|+.++++++ + ++++|++||+. |||+|+.+++.|.++++++++.|+.+|+|+.++...+++
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~-~-gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~ 78 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDF-K-GKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVRE 78 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGG-T-TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHh-C-CCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHH
Confidence 5799999999966 99999999996 4 44566666777 999999999999999999999999999999998877999
Q ss_pred HHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCC
Q 025441 147 FSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKS 226 (252)
Q Consensus 147 f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg 226 (252)
|.++++++|+++.|++..+.++||+..... . +.++..|..||||++ |
T Consensus 79 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-----~---------------------------~~~~~~P~~~lId~~-G 125 (146)
T PF08534_consen 79 FLKKYGINFPVLSDPDGALAKALGVTIMED-----P---------------------------GNGFGIPTTFLIDKD-G 125 (146)
T ss_dssp HHHHTTTTSEEEEETTSHHHHHTTCEEECC-----T---------------------------TTTSSSSEEEEEETT-S
T ss_pred HHHhhCCCceEEechHHHHHHHhCCccccc-----c---------------------------ccCCeecEEEEEECC-C
Confidence 999999999999999999999999764321 0 011457889999999 6
Q ss_pred eEEEEEeCCCCCCCCCHHHHH
Q 025441 227 NISYIHRDKEAGDDPDIQDIL 247 (252)
Q Consensus 227 ~I~~~h~~~~~~D~~~~~eIL 247 (252)
+|+|.|.+.+..+.++++++|
T Consensus 126 ~V~~~~~g~~~~~~~~~~~~l 146 (146)
T PF08534_consen 126 KVVYRHVGPDPDEESDLEAVL 146 (146)
T ss_dssp BEEEEEESSBTTSHHSHHHHH
T ss_pred EEEEEEeCCCCCCCCChhhcC
Confidence 999999998773366666665
No 20
>PRK15000 peroxidase; Provisional
Probab=99.90 E-value=7.6e-23 Score=176.55 Aligned_cols=145 Identities=12% Similarity=0.056 Sum_probs=119.1
Q ss_pred cccCCCCCcEEecCC--CCe---EeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHH
Q 025441 70 DTKNLLDTVKVYDVN--GNA---IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 70 ~~g~~apdf~L~d~~--G~~---v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~ 144 (252)
.+|+.+|+|++.+.. |+. ++++++++++++||.||++.|||.|..|+++|++.+++|++.|++||+||.|+....
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~ 82 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVH 82 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHH
Confidence 479999999999864 454 455555567788888888899999999999999999999999999999999998777
Q ss_pred HHHHHH----cC---CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccce
Q 025441 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 217 (252)
Q Consensus 145 ~~f~~~----~~---l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 217 (252)
++|.+. .+ ++||+++|+++++.++||+.... .+..+++
T Consensus 83 ~~w~~~~~~~~g~~~i~fpllsD~~~~ia~~ygv~~~~-----------------------------------~g~~~r~ 127 (200)
T PRK15000 83 NAWRNTPVDKGGIGPVKYAMVADVKREIQKAYGIEHPD-----------------------------------EGVALRG 127 (200)
T ss_pred HHHHhhHHHhCCccccCceEEECCCcHHHHHcCCccCC-----------------------------------CCcEEeE
Confidence 666543 44 69999999999999999975321 0124689
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 218 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 218 ~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+||||++ |+|++.+.+...-++ +++|+|++++
T Consensus 128 tfiID~~-G~I~~~~~~~~~~gr-~~~eilr~l~ 159 (200)
T PRK15000 128 SFLIDAN-GIVRHQVVNDLPLGR-NIDEMLRMVD 159 (200)
T ss_pred EEEECCC-CEEEEEEecCCCCCC-CHHHHHHHHH
Confidence 9999999 699999998666665 8999999876
No 21
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.89 E-value=2e-22 Score=161.67 Aligned_cols=138 Identities=13% Similarity=0.224 Sum_probs=120.3
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHc-C
Q 025441 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQT-K 152 (252)
Q Consensus 74 ~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~-~ 152 (252)
.+|+|++.|.+|+.++++++ +++++||+|+++.||+.|..++++|++++++|++.|+.+|+|+.++.+.+++|++++ +
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~ 79 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDF-KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGG 79 (140)
T ss_pred CCCCceeccCCCcEEehHHh-CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccC
Confidence 47999999999999999999 567888888889999999999999999999999999999999999999999999999 9
Q ss_pred CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEE
Q 025441 153 FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 232 (252)
Q Consensus 153 l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h 232 (252)
.+|++++|++..++++||+..... .++....+.+||||++ |+|+|.|
T Consensus 80 ~~~~~l~D~~~~~~~~~g~~~~~~--------------------------------~~~~~~~p~~~lid~~-g~i~~~~ 126 (140)
T cd02971 80 LNFPLLSDPDGEFAKAYGVLIEKS--------------------------------AGGGLAARATFIIDPD-GKIRYVE 126 (140)
T ss_pred CCceEEECCChHHHHHcCCccccc--------------------------------cccCceeEEEEEECCC-CcEEEEE
Confidence 999999999999999999875421 0112346789999998 6999999
Q ss_pred eCCCCCCCCCHHHH
Q 025441 233 RDKEAGDDPDIQDI 246 (252)
Q Consensus 233 ~~~~~~D~~~~~eI 246 (252)
.+.++ ++...+.+
T Consensus 127 ~~~~~-~~~~~~~~ 139 (140)
T cd02971 127 VEPLP-TGRNAEEL 139 (140)
T ss_pred ecCCC-CCcChHhh
Confidence 99888 66666654
No 22
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.89 E-value=1.8e-22 Score=162.13 Aligned_cols=139 Identities=18% Similarity=0.242 Sum_probs=116.9
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC
Q 025441 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (252)
Q Consensus 73 ~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~ 152 (252)
+.+|+|++.|.+|+.++++++ +++++||.|+++.|||.|..++++|++.++++++.|+++|+|+.|+.+.+++|+++++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~-~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDL-RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCCCCccccCCCCCEEeHHHh-CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 478999999999999999998 4567777776789999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEE
Q 025441 153 FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIH 232 (252)
Q Consensus 153 l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h 232 (252)
++|++++|++++++++||+..... .+.....+.+||||++ |+|++.|
T Consensus 80 ~~~~~l~D~~~~~~~~~gv~~~~~--------------------------------~~~~~~~p~~~lid~~-G~v~~~~ 126 (140)
T cd03017 80 LPFPLLSDPDGKLAKAYGVWGEKK--------------------------------KKYMGIERSTFLIDPD-GKIVKVW 126 (140)
T ss_pred CCceEEECCccHHHHHhCCccccc--------------------------------cccCCcceeEEEECCC-CEEEEEE
Confidence 999999999999999999764321 0011235789999998 6999999
Q ss_pred eCCCCCCCCCHHHHH
Q 025441 233 RDKEAGDDPDIQDIL 247 (252)
Q Consensus 233 ~~~~~~D~~~~~eIL 247 (252)
.+.. ..-+++++|
T Consensus 127 ~g~~--~~~~~~~~~ 139 (140)
T cd03017 127 RKVK--PKGHAEEVL 139 (140)
T ss_pred ecCC--ccchHHHHh
Confidence 8755 444455655
No 23
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.87 E-value=2.2e-21 Score=166.93 Aligned_cols=146 Identities=11% Similarity=0.094 Sum_probs=120.3
Q ss_pred CccccCCCCCcEEec----CCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHH
Q 025441 68 SEDTKNLLDTVKVYD----VNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 68 ~~~~g~~apdf~L~d----~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~ 143 (252)
...+|+.+|+|++.+ .+|+.++|+++ +++++||+|+++.||+.|..|+.+|++.+++|++.|++||+||.|+...
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~-~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~ 83 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSY-KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYA 83 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHH-CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHH
Confidence 357899999999654 56789999998 4578888888899999999999999999999999999999999999876
Q ss_pred HHHHHHH-------cCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccc
Q 025441 144 ARTFSEQ-------TKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 144 ~~~f~~~-------~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~g 216 (252)
..+|... .+++||+++|+++++.++||+.... .+...+
T Consensus 84 ~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~-----------------------------------~g~~~r 128 (199)
T PTZ00253 84 HLQWTLQERKKGGLGTMAIPMLADKTKSIARSYGVLEEE-----------------------------------QGVAYR 128 (199)
T ss_pred HHHHHhChHhhCCccccccceEECcHhHHHHHcCCcccC-----------------------------------CCceEE
Confidence 6665421 1489999999999999999974321 012357
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
++||||++ |+|++.++.... ...+++++|++++
T Consensus 129 ~~fiID~~-G~i~~~~~~~~~-~~r~~~e~l~~l~ 161 (199)
T PTZ00253 129 GLFIIDPK-GMLRQITVNDMP-VGRNVEEVLRLLE 161 (199)
T ss_pred EEEEECCC-CEEEEEEecCCC-CCCCHHHHHHHHH
Confidence 99999998 699999998555 5568899998875
No 24
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=4.5e-20 Score=152.86 Aligned_cols=177 Identities=15% Similarity=0.196 Sum_probs=140.0
Q ss_pred eccCCCCCCCccccCCcccccCCCCCeee-eeeccCCCCCCCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcC
Q 025441 28 ILPNQSPLWRPRHWNKTLKLSPRRPSHVI-ASAVSESPPSVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARH 106 (252)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~ 106 (252)
..|.-+..-|||.+-++ |++ .++.| .....++.|+.+|||+|.|.||.+|+|.++.+.+++|+.||++
T Consensus 32 ~vpkK~~ks~~~~~~~~---------~~~~~s~~S--sds~~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~ 100 (211)
T KOG0855|consen 32 SVPKKSSKSNFFGSTLT---------HSSYISPVS--SDSLKVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPA 100 (211)
T ss_pred cccccccccCccccccc---------ceeeecccc--ccceeeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEecc
Confidence 34555666677755443 222 33333 2233679999999999999999999999998888999999999
Q ss_pred CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHH
Q 025441 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLK 186 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~ 186 (252)
.-.|-|.+|++.+++.|++|++.|++|+++|.|+....++|..++++||.+++||.+++.+.+|......
T Consensus 101 asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~sqKaF~sKqnlPYhLLSDpk~e~ik~lGa~k~p~---------- 170 (211)
T KOG0855|consen 101 ASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSASQKAFASKQNLPYHLLSDPKNEVIKDLGAPKDPF---------- 170 (211)
T ss_pred CCCCCcccccccccccHHHHhhcCceEEeeccCchHHHHHhhhhccCCeeeecCcchhHHHHhCCCCCCC----------
Confidence 9999999999999999999999999999999999999999999999999999999999999998775431
Q ss_pred HHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 187 IIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 187 ~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+++..+..||++.||++..+... ...-...++|-++.+.
T Consensus 171 ------------------------gg~~~Rsh~if~kg~~k~~ik~~--~isPevsvd~a~k~~~ 209 (211)
T KOG0855|consen 171 ------------------------GGLPGRSHYIFDKGGVKQLIKNN--QISPEVSVDEALKFLK 209 (211)
T ss_pred ------------------------CCcccceEEEEecCCeEEEEEec--ccCccccHHHHHHHHh
Confidence 12345579999987544444333 4555566777776553
No 25
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.83 E-value=8.9e-20 Score=152.45 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=115.7
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC--------HHH
Q 025441 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--------VEQ 143 (252)
Q Consensus 72 g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~--------~~~ 143 (252)
|+.+|+|++.|.+|+.++++++. +++++|++||++|||.|..+++.|+++++++++.++.+|+|+.++ .+.
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~-~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~ 79 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFA-DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPEN 79 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHh-CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHH
Confidence 67899999999999999999974 456788888899999999999999999999999999999999864 578
Q ss_pred HHHHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeC
Q 025441 144 ARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 144 ~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 223 (252)
+++|+++++++|+++.|+++.+.+.||+.. .|..||||+
T Consensus 80 ~~~~~~~~~~~~~~l~D~~~~~~~~~~v~~-----------------------------------------~P~~~lid~ 118 (171)
T cd02969 80 MKAKAKEHGYPFPYLLDETQEVAKAYGAAC-----------------------------------------TPDFFLFDP 118 (171)
T ss_pred HHHHHHHCCCCceEEECCchHHHHHcCCCc-----------------------------------------CCcEEEECC
Confidence 999999999999999999998888887531 135899999
Q ss_pred CCCeEEEEEeCCCC----CCCCCHHHHHHHhh
Q 025441 224 GKSNISYIHRDKEA----GDDPDIQDILKACC 251 (252)
Q Consensus 224 ggg~I~~~h~~~~~----~D~~~~~eIL~al~ 251 (252)
+ |+|+|.+...+. ..++..+++.++++
T Consensus 119 ~-G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~ 149 (171)
T cd02969 119 D-GKLVYRGRIDDSRPGNDPPVTGRDLRAALD 149 (171)
T ss_pred C-CeEEEeecccCCcccccccccHHHHHHHHH
Confidence 8 699998754332 35677778877765
No 26
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.83 E-value=6.5e-20 Score=144.20 Aligned_cols=114 Identities=32% Similarity=0.532 Sum_probs=89.2
Q ss_pred HHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhh
Q 025441 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQD 198 (252)
Q Consensus 119 L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~ 198 (252)
|++.+++|+++|+++|+|++++.+.+++|++..++|||||+||++++|++||+.......+.+......+..+... .
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~---~ 78 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQS---A 78 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHH---H
Confidence 6778999999999999999999978999999999999999999999999999998765555454433333222222 2
Q ss_pred ccccccccccCCCccccceEEEEeCCCCeEEEEEeCCC
Q 025441 199 WKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDKE 236 (252)
Q Consensus 199 ~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~~ 236 (252)
++.+..++...++.+|+||+||+|++ |+|+|+|++++
T Consensus 79 ~~~~~~~~~~~g~~~q~GG~fv~d~~-g~v~~~hr~~~ 115 (115)
T PF13911_consen 79 KNGGIPGNKDQGDGWQLGGTFVFDPG-GKVLYEHRDRH 115 (115)
T ss_pred HHcCCCCcccCCCceecCeEEEEcCC-CeEEEEEecCC
Confidence 22334444225677999999999998 59999999874
No 27
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2e-19 Score=152.81 Aligned_cols=145 Identities=17% Similarity=0.198 Sum_probs=124.4
Q ss_pred ccccCCCCCcEEecC-CCC---eEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHH
Q 025441 69 EDTKNLLDTVKVYDV-NGN---AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 69 ~~~g~~apdf~L~d~-~G~---~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~ 144 (252)
..+|+++|+|++... .|+ .++++++.+ +++||+||++.+.+.|-.|+.++++.|++|++.|++||+||.|+...+
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~g-kw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH 81 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYG-KWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSH 81 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcC-cEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHH
Confidence 468999999999877 775 999999876 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH----cC---CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccce
Q 025441 145 RTFSEQ----TK---FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGG 217 (252)
Q Consensus 145 ~~f~~~----~~---l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg 217 (252)
.+|.+. .+ ++||+++|+++++.++||+..... +..++|
T Consensus 82 ~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~-----------------------------------g~a~R~ 126 (194)
T COG0450 82 KAWKATIREAGGIGKIKFPMIADPKGEIARAYGVLHPEE-----------------------------------GLALRG 126 (194)
T ss_pred HHHHhcHHhcCCccceecceEEcCchhHHHHcCCcccCC-----------------------------------CcceeE
Confidence 999876 55 789999999999999999875321 124779
Q ss_pred EEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 218 IIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 218 ~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+|||||+ |+|++..+....-.| +++|+|+.++
T Consensus 127 ~FIIDp~-g~ir~~~v~~~~iGR-n~dEilR~id 158 (194)
T COG0450 127 TFIIDPD-GVIRHILVNPLTIGR-NVDEILRVID 158 (194)
T ss_pred EEEECCC-CeEEEEEEecCCCCc-CHHHHHHHHH
Confidence 9999999 699999988655333 5667777654
No 28
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.82 E-value=1.5e-19 Score=155.95 Aligned_cols=89 Identities=18% Similarity=0.370 Sum_probs=82.5
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~ 141 (252)
+.+..+|+|++.|.+|+.++++++ ++++||++||++|||+|+.|++.|+++++++++.|++||+|++ ++.
T Consensus 14 ~~~~~~pdf~l~d~~G~~vsL~~~--kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~ 91 (199)
T PTZ00056 14 ELRKSIYDYTVKTLEGTTVPMSSL--KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNT 91 (199)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCH
Confidence 567899999999999999999998 4578899999999999999999999999999999999999986 567
Q ss_pred HHHHHHHHHcCCcceeeec
Q 025441 142 EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 142 ~~~~~f~~~~~l~fpllsD 160 (252)
+.+++|+++++++||+++|
T Consensus 92 e~~~~f~~~~~~~fpvl~d 110 (199)
T PTZ00056 92 KDIRKFNDKNKIKYNFFEP 110 (199)
T ss_pred HHHHHHHHHcCCCceeeee
Confidence 8999999999999999987
No 29
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.82 E-value=4.9e-20 Score=151.62 Aligned_cols=84 Identities=18% Similarity=0.246 Sum_probs=76.4
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHHHHHH
Q 025441 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (252)
Q Consensus 75 apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~~~~~ 146 (252)
+|+|++.|.+|+.++++++ ++++||++||++||| |+.|+++|+++++++++.|+.+|+|+. ++.+.+++
T Consensus 2 ~~~f~l~d~~G~~v~l~~~--~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~ 78 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKY--KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKE 78 (152)
T ss_pred cceeEEECCCCCEEeHHHh--CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHH
Confidence 6899999999999999998 457788888999999 999999999999999999999999986 34678999
Q ss_pred HHHH-cCCcceeeecC
Q 025441 147 FSEQ-TKFKGEVYADP 161 (252)
Q Consensus 147 f~~~-~~l~fpllsDp 161 (252)
|+++ ++++||+++|.
T Consensus 79 f~~~~~~~~fp~~~d~ 94 (152)
T cd00340 79 FCETNYGVTFPMFAKI 94 (152)
T ss_pred HHHHhcCCCceeeeeE
Confidence 9987 89999999875
No 30
>PLN02412 probable glutathione peroxidase
Probab=99.81 E-value=2.2e-19 Score=150.48 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=99.0
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC--------CHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVE 142 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d--------~~~ 142 (252)
..+.+|+|++.|.+|+.++++++ ++++||++||++|||+|++|+++|+++++++++.|+.||+|+.+ +.+
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~--~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQY--KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHh--CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 34789999999999999999998 45788888899999999999999999999999999999999963 444
Q ss_pred HH-HHHHHHcCCcceeeec--CCh-HHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceE
Q 025441 143 QA-RTFSEQTKFKGEVYAD--PNH-SSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGI 218 (252)
Q Consensus 143 ~~-~~f~~~~~l~fpllsD--p~~-~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~ 218 (252)
.+ +.|.++++++||+++| ++. .....|+....- +.+..+. +....+.+
T Consensus 83 ~~~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~------------------------~~~~~~~----~v~~~p~t 134 (167)
T PLN02412 83 EIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAE------------------------KGGLFGD----AIKWNFTK 134 (167)
T ss_pred HHHHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhh------------------------CCCCCCC----CcCCCCee
Confidence 54 4557999999999874 442 333333321100 0000000 01125789
Q ss_pred EEEeCCCCeEEEEEeC
Q 025441 219 IVAGPGKSNISYIHRD 234 (252)
Q Consensus 219 fVid~ggg~I~~~h~~ 234 (252)
||||++ |+|++.|.+
T Consensus 135 flId~~-G~vv~~~~g 149 (167)
T PLN02412 135 FLVSKE-GKVVQRYAP 149 (167)
T ss_pred EEECCC-CcEEEEECC
Confidence 999998 699999975
No 31
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.81 E-value=5.3e-19 Score=150.99 Aligned_cols=136 Identities=15% Similarity=0.196 Sum_probs=105.1
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
..++|+.+|+|+++|.+|+.+++++...+++.+|++||++|||+|+++++.+.+.+. +.|+++++|+.++.+.+++|
T Consensus 45 ~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~---~~~~~vv~Is~~~~~~~~~~ 121 (189)
T TIGR02661 45 GPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIAR---AEETDVVMISDGTPAEHRRF 121 (189)
T ss_pred CCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHH---hcCCcEEEEeCCCHHHHHHH
Confidence 468999999999999999999997431134556667789999999999999998764 35889999999988999999
Q ss_pred HHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCe
Q 025441 148 SEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSN 227 (252)
Q Consensus 148 ~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~ 227 (252)
+++++++|+.|. .+.++.++||+. ..|..|+||++ |+
T Consensus 122 ~~~~~~~~~~~~-~~~~i~~~y~v~-----------------------------------------~~P~~~lID~~-G~ 158 (189)
T TIGR02661 122 LKDHELGGERYV-VSAEIGMAFQVG-----------------------------------------KIPYGVLLDQD-GK 158 (189)
T ss_pred HHhcCCCcceee-chhHHHHhccCC-----------------------------------------ccceEEEECCC-Ce
Confidence 999999987665 344554444321 14568999998 69
Q ss_pred EEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 228 ISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 228 I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
|++.+. ...+..++++++++++
T Consensus 159 I~~~g~---~~~~~~le~ll~~l~~ 180 (189)
T TIGR02661 159 IRAKGL---TNTREHLESLLEADRE 180 (189)
T ss_pred EEEccC---CCCHHHHHHHHHHHHc
Confidence 998642 2334558899988864
No 32
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.81 E-value=3.6e-19 Score=151.21 Aligned_cols=89 Identities=11% Similarity=0.241 Sum_probs=78.0
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC--------CHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--------SVE 142 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d--------~~~ 142 (252)
.++.+|+|++.|.+|+.++++++ +++++||+|+|++|||+|+.|+++|+++++++++.|+.||+|+++ +.+
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~ 94 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEP 94 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHH
Confidence 36789999999999999999998 455677777799999999999999999999999999999999963 346
Q ss_pred HHHHHHH-HcCCcceeeec
Q 025441 143 QARTFSE-QTKFKGEVYAD 160 (252)
Q Consensus 143 ~~~~f~~-~~~l~fpllsD 160 (252)
.+.+|.. +++++||+++|
T Consensus 95 ~~~~f~~~~~~~~fpv~~d 113 (183)
T PTZ00256 95 EIKEYVQKKFNVDFPLFQK 113 (183)
T ss_pred HHHHHHHHhcCCCCCCceE
Confidence 7888874 78999999976
No 33
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.81 E-value=6.7e-19 Score=155.57 Aligned_cols=90 Identities=16% Similarity=0.256 Sum_probs=81.1
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSV 141 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~ 141 (252)
.+|+.+|+|++.|.+|+.++++++ ++++||++||++||++|+.|+++|+++++++++.|++||+|++ ++.
T Consensus 74 ~~g~~aPdF~l~d~~G~~vsLsd~--kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 74 ATEKSVHDFTVKDIDGKDVALSKF--KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred hcCCCCCceEEECCCCCEEeHHHh--CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 578999999999999999999998 4578888889999999999999999999999999999999996 456
Q ss_pred HHHHHHH-HHcCCcceeeecC
Q 025441 142 EQARTFS-EQTKFKGEVYADP 161 (252)
Q Consensus 142 ~~~~~f~-~~~~l~fpllsDp 161 (252)
+.+++|+ ++++++||++.|.
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~ 172 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKV 172 (236)
T ss_pred HHHHHHHHHhcCCCCcccccc
Confidence 7889997 6889999999653
No 34
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.80 E-value=1e-18 Score=145.20 Aligned_cols=139 Identities=14% Similarity=0.183 Sum_probs=114.0
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHH
Q 025441 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR 145 (252)
Q Consensus 67 ~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~ 145 (252)
.....|+.+|+|++.|.+|+.++++++ ++ +.++++||+.||+.|+.+++.|.+.++++.+.++++++|+.++. +.++
T Consensus 33 ~~~~~g~~~p~~~~~~~~g~~~~l~~~-~~-k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~ 110 (173)
T PRK03147 33 EKVQVGKEAPNFVLTDLEGKKIELKDL-KG-KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVK 110 (173)
T ss_pred cccCCCCCCCCcEeecCCCCEEeHHHc-CC-CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHH
Confidence 457899999999999999999999997 44 44666667999999999999999999999999999999999765 6889
Q ss_pred HHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCC
Q 025441 146 TFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 146 ~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 225 (252)
+|.++++++|+++.|++..+.++||+.. .|..|++|++
T Consensus 111 ~~~~~~~~~~~~~~d~~~~~~~~~~v~~-----------------------------------------~P~~~lid~~- 148 (173)
T PRK03147 111 NFVNRYGLTFPVAIDKGRQVIDAYGVGP-----------------------------------------LPTTFLIDKD- 148 (173)
T ss_pred HHHHHhCCCceEEECCcchHHHHcCCCC-----------------------------------------cCeEEEECCC-
Confidence 9999999999999999999888887521 3468999998
Q ss_pred CeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 226 SNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 226 g~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
|+|.+.+.+... .-++.+.|+.++
T Consensus 149 g~i~~~~~g~~~--~~~l~~~l~~~~ 172 (173)
T PRK03147 149 GKVVKVITGEMT--EEQLEEYLEKIK 172 (173)
T ss_pred CcEEEEEeCCCC--HHHHHHHHHHhc
Confidence 699988866332 223445555543
No 35
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.80 E-value=6e-19 Score=145.16 Aligned_cols=84 Identities=11% Similarity=0.174 Sum_probs=76.1
Q ss_pred CCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHHHHHH
Q 025441 75 LDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQART 146 (252)
Q Consensus 75 apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~~~~~ 146 (252)
+-+|++.|.+|+.++++++ +++++|++||++|||+|..++++|++++.++++.|+.+|+|++ ++.+.+++
T Consensus 2 ~~~f~l~~~~G~~~~l~~~--~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKY--RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cccceeECCCCCEecHHHh--CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHH
Confidence 4589999999999999998 3456778889999999999999999999999999999999995 66788999
Q ss_pred HHHH-cCCcceeeec
Q 025441 147 FSEQ-TKFKGEVYAD 160 (252)
Q Consensus 147 f~~~-~~l~fpllsD 160 (252)
|+++ ++++||+++|
T Consensus 80 f~~~~~~~~fp~~~d 94 (153)
T TIGR02540 80 FARRNYGVTFPMFSK 94 (153)
T ss_pred HHHHhcCCCCCccce
Confidence 9986 8999999987
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.78 E-value=1.1e-18 Score=138.83 Aligned_cols=107 Identities=13% Similarity=0.240 Sum_probs=92.8
Q ss_pred CCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec------CCHHHHHHHHHHcCCcceee
Q 025441 85 GNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTFSEQTKFKGEVY 158 (252)
Q Consensus 85 G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~------d~~~~~~~f~~~~~l~fpll 158 (252)
|+.++++++ +++++|++||++||++|+.+++.|+++++++++.|+.+|+|+. ++.+.+++|+++++++||++
T Consensus 13 ~~~v~l~~~--~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQL--RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHh--CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEE
Confidence 578999998 4466777778999999999999999999999999999999976 45789999999999999999
Q ss_pred ecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEEeCC
Q 025441 159 ADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHRDK 235 (252)
Q Consensus 159 sDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~~~ 235 (252)
.|++..++++||+.. .|.+||||++ |+|+|.|.+.
T Consensus 91 ~D~~~~~~~~~~v~~-----------------------------------------~P~~~vid~~-G~v~~~~~G~ 125 (126)
T cd03012 91 NDNDYATWRAYGNQY-----------------------------------------WPALYLIDPT-GNVRHVHFGE 125 (126)
T ss_pred ECCchHHHHHhCCCc-----------------------------------------CCeEEEECCC-CcEEEEEecC
Confidence 999999988887521 2468999998 6999999864
No 37
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.78 E-value=3e-18 Score=145.72 Aligned_cols=121 Identities=15% Similarity=0.107 Sum_probs=97.3
Q ss_pred CccccCCCCCcEEecCCC--CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC-CHHHH
Q 025441 68 SEDTKNLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQA 144 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d-~~~~~ 144 (252)
...+|+.+|+|++.|.+| +.+++.++. +++++|++||++||++|++|++.|.++. +.|++||+|+.+ +.+.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~-~gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~~~ 112 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLT-QGKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQKA 112 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHHHH
Confidence 356799999999999984 677766654 3566777888999999999999997754 469999999974 55788
Q ss_pred HHHHHHcCCcce-eeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeC
Q 025441 145 RTFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGP 223 (252)
Q Consensus 145 ~~f~~~~~l~fp-llsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ 223 (252)
++|.++++++|+ ++.|++..+.++||+. -.|.+||||+
T Consensus 113 ~~~~~~~~~~~~~~~~D~~~~~~~~~gv~-----------------------------------------~~P~t~vid~ 151 (185)
T PRK15412 113 ISWLKELGNPYALSLFDGDGMLGLDLGVY-----------------------------------------GAPETFLIDG 151 (185)
T ss_pred HHHHHHcCCCCceEEEcCCccHHHhcCCC-----------------------------------------cCCeEEEECC
Confidence 999999999999 4889887776666532 1356999999
Q ss_pred CCCeEEEEEeCC
Q 025441 224 GKSNISYIHRDK 235 (252)
Q Consensus 224 ggg~I~~~h~~~ 235 (252)
+ |+|.|.|.+.
T Consensus 152 ~-G~i~~~~~G~ 162 (185)
T PRK15412 152 N-GIIRYRHAGD 162 (185)
T ss_pred C-ceEEEEEecC
Confidence 8 6999999873
No 38
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.76 E-value=6.3e-18 Score=135.93 Aligned_cols=130 Identities=15% Similarity=0.161 Sum_probs=104.4
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHh-hHHHHHHHHHhHHHHHhCC---CEEEEEecC----CHHHHH
Q 025441 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASG---VALVLIGPG----SVEQAR 145 (252)
Q Consensus 74 ~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~-C~~el~~L~~~~~~~~~~G---v~vVaVs~d----~~~~~~ 145 (252)
.+|+|++.|.+|+.++++++ +++++|++|++.||+. |+.+++.|+++++++.+.| +++|+|+.| +.+.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~--~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~ 78 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDL--KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLK 78 (142)
T ss_pred CCCceEEEcCCCCEEchHHh--CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHH
Confidence 47999999999999999998 4566778889999997 9999999999999998875 999999975 457899
Q ss_pred HHHHHcCCcceeeecCC---hHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEe
Q 025441 146 TFSEQTKFKGEVYADPN---HSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAG 222 (252)
Q Consensus 146 ~f~~~~~l~fpllsDp~---~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid 222 (252)
+|.++++.+|+++.|++ ..+.++||+...... +. . . ..+....++.||||
T Consensus 79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~---~~-------------------~-~----~~~~~~~~~~~lid 131 (142)
T cd02968 79 AYAKAFGPGWIGLTGTPEEIEALAKAFGVYYEKVP---ED-------------------D-G----DYLVDHSAAIYLVD 131 (142)
T ss_pred HHHHHhCCCcEEEECCHHHHHHHHHHhcEEEEecC---CC-------------------C-C----ceeEeccceEEEEC
Confidence 99999999999999986 788999987644210 00 0 0 00012357899999
Q ss_pred CCCCeEEEEEe
Q 025441 223 PGKSNISYIHR 233 (252)
Q Consensus 223 ~ggg~I~~~h~ 233 (252)
++ |+|++.|.
T Consensus 132 ~~-G~i~~~~~ 141 (142)
T cd02968 132 PD-GKLVRYYG 141 (142)
T ss_pred CC-CCEEEeec
Confidence 98 69999885
No 39
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.76 E-value=9.5e-18 Score=141.03 Aligned_cols=122 Identities=16% Similarity=0.128 Sum_probs=96.8
Q ss_pred CCCccccCCCCCcEEecCCCCeEeC--CCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HH
Q 025441 66 SVSEDTKNLLDTVKVYDVNGNAIPI--SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VE 142 (252)
Q Consensus 66 ~~~~~~g~~apdf~L~d~~G~~v~l--s~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~ 142 (252)
.+...+|+.+|+|++.|.+|+..++ +++. +++++|++||+.|||.|+++++.|++++ +.|+++|+|+.++ .+
T Consensus 31 ~~~~~vG~~ap~f~l~~~~G~~~~~~~~~~~-~gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 31 LPSALIGKPVPAFPLAALREPLQAYTPEAFI-QGKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQ 105 (173)
T ss_pred CcchhcCCCCCCccccccCCCCcccCHHHhc-CCCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChH
Confidence 3345789999999999999974444 4554 4567777778999999999999987654 4589999999754 46
Q ss_pred HHHHHHHHcCCcce-eeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEE
Q 025441 143 QARTFSEQTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVA 221 (252)
Q Consensus 143 ~~~~f~~~~~l~fp-llsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVi 221 (252)
..++|+++++++|+ ++.|++..+.++|++. ..|.+|+|
T Consensus 106 ~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~-----------------------------------------~~P~~~~i 144 (173)
T TIGR00385 106 NALKFLKELGNPYQAILIDPNGKLGLDLGVY-----------------------------------------GAPETFLV 144 (173)
T ss_pred HHHHHHHHcCCCCceEEECCCCchHHhcCCe-----------------------------------------eCCeEEEE
Confidence 77899999999998 6789988877776542 13579999
Q ss_pred eCCCCeEEEEEeC
Q 025441 222 GPGKSNISYIHRD 234 (252)
Q Consensus 222 d~ggg~I~~~h~~ 234 (252)
|++ |+|+|.|.+
T Consensus 145 d~~-G~i~~~~~G 156 (173)
T TIGR00385 145 DGN-GVILYRHAG 156 (173)
T ss_pred cCC-ceEEEEEec
Confidence 998 699999986
No 40
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.72 E-value=8.2e-17 Score=127.70 Aligned_cols=116 Identities=18% Similarity=0.122 Sum_probs=93.8
Q ss_pred CCCCCcEEecCCC--CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec-CCHHHHHHHHH
Q 025441 73 NLLDTVKVYDVNG--NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSE 149 (252)
Q Consensus 73 ~~apdf~L~d~~G--~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~-d~~~~~~~f~~ 149 (252)
..+|+|++.|.+| +.++++++ + ++.+|+.||+.|||.|+.+++.|+++.+++ +++||+|+. ++.+.+++|++
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~-~-gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~~~ 75 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADL-K-GKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAWLA 75 (127)
T ss_pred CCCCCcccccccCCCccccHHHc-C-CCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHHHH
Confidence 3689999999998 88888888 3 445666667999999999999999876553 599999996 56689999999
Q ss_pred HcCCcce-eeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeE
Q 025441 150 QTKFKGE-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 228 (252)
Q Consensus 150 ~~~l~fp-llsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I 228 (252)
+++++|+ ++.|++..+.+.||+. .+|.+|++|++ |+|
T Consensus 76 ~~~~~~~~~~~D~~~~~~~~~~v~-----------------------------------------~~P~~~~ld~~-G~v 113 (127)
T cd03010 76 RHGNPYAAVGFDPDGRVGIDLGVY-----------------------------------------GVPETFLIDGD-GII 113 (127)
T ss_pred hcCCCCceEEECCcchHHHhcCCC-----------------------------------------CCCeEEEECCC-ceE
Confidence 9999986 6789877776666542 24579999998 699
Q ss_pred EEEEeCC
Q 025441 229 SYIHRDK 235 (252)
Q Consensus 229 ~~~h~~~ 235 (252)
++.+.+.
T Consensus 114 ~~~~~G~ 120 (127)
T cd03010 114 RYKHVGP 120 (127)
T ss_pred EEEEecc
Confidence 9998863
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.72 E-value=1.3e-16 Score=123.89 Aligned_cols=83 Identities=14% Similarity=0.237 Sum_probs=70.8
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-
Q 025441 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK- 154 (252)
Q Consensus 76 pdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~- 154 (252)
|+|++.|.+|+.++++++. +++.+|++||++||++|+++++.|+++++++ +.++.+++|+.++.+..++|+++++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~-~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~-~~~~~vi~v~~~~~~~~~~~~~~~~~~~ 78 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGIS-PGRPTLLFFLSPTCPVCKKLLPVIRSIARAE-ADWLDVVLASDGEKAEHQRFLKKHGLEA 78 (114)
T ss_pred CCceeecCCCCEEEccccc-CCCeEEEEEECCCCcchHhHhHHHHHHHHHh-cCCcEEEEEeCCCHHHHHHHHHHhCCCC
Confidence 7999999999999999984 3456666678999999999999999987776 457889999888888999999999995
Q ss_pred ceeeec
Q 025441 155 GEVYAD 160 (252)
Q Consensus 155 fpllsD 160 (252)
+|++.|
T Consensus 79 ~p~~~~ 84 (114)
T cd02967 79 FPYVLS 84 (114)
T ss_pred CcEEec
Confidence 887753
No 42
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.68 E-value=6.2e-16 Score=117.20 Aligned_cols=94 Identities=21% Similarity=0.272 Sum_probs=84.1
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC--HHHHHHHHHHcCCc
Q 025441 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFK 154 (252)
Q Consensus 77 df~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~--~~~~~~f~~~~~l~ 154 (252)
+|++.|.+|+.++++++ .++.+|++|++.||+.|+..++.|.++..++.+.++.+++|+.+. .+.+++|.++++++
T Consensus 1 ~~~~~~~~g~~~~~~~~--~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~ 78 (116)
T cd02966 1 DFSLPDLDGKPVSLSDL--KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGIT 78 (116)
T ss_pred CccccCCCCCEeehHHc--CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCC
Confidence 57889999999999998 356777788899999999999999999999988899999999998 89999999999999
Q ss_pred ceeeecCChHHHHHcCCc
Q 025441 155 GEVYADPNHSSYEALSFV 172 (252)
Q Consensus 155 fpllsDp~~~ly~alGv~ 172 (252)
++++.|++..+.+.||+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 79 FPVLLDPDGELAKAYGVR 96 (116)
T ss_pred cceEEcCcchHHHhcCcC
Confidence 999999988887777653
No 43
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.65 E-value=3.5e-15 Score=117.25 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=95.2
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC--CHHHHHHHHHHcCC
Q 025441 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKF 153 (252)
Q Consensus 76 pdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d--~~~~~~~f~~~~~l 153 (252)
|+|++.|.+|+.+++.++ +++.+|++|++.||+.|+.+++.|++++++ +.+++|+.+ +.+.+++|.+++++
T Consensus 1 p~f~l~~~~g~~~~~~~~--~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~~~ 73 (123)
T cd03011 1 PLFTATTLDGEQFDLESL--SGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKKGY 73 (123)
T ss_pred CCceeecCCCCEeeHHHh--CCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHcCC
Confidence 799999999999999987 335666666799999999999999988765 677888765 46889999999999
Q ss_pred cceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeEEEEEe
Q 025441 154 KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNISYIHR 233 (252)
Q Consensus 154 ~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I~~~h~ 233 (252)
+|+++.|++.++.+.|++.. .|..+|+|++ | |++.+.
T Consensus 74 ~~~~~~d~~~~~~~~~~i~~-----------------------------------------~P~~~vid~~-g-i~~~~~ 110 (123)
T cd03011 74 GFPVINDPDGVISARWGVSV-----------------------------------------TPAIVIVDPG-G-IVFVTT 110 (123)
T ss_pred CccEEECCCcHHHHhCCCCc-----------------------------------------ccEEEEEcCC-C-eEEEEe
Confidence 99999999988888776421 3468999987 5 998877
Q ss_pred CCCCCCCCCHHHHHHH
Q 025441 234 DKEAGDDPDIQDILKA 249 (252)
Q Consensus 234 ~~~~~D~~~~~eIL~a 249 (252)
+ ..+.++|.+.
T Consensus 111 g-----~~~~~~~~~~ 121 (123)
T cd03011 111 G-----VTSEWGLRLR 121 (123)
T ss_pred c-----cCCHHHHHhh
Confidence 5 3355555543
No 44
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.65 E-value=4.6e-15 Score=143.94 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=101.4
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC------CH
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG------SV 141 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d------~~ 141 (252)
...+++.+|+|++.|.+|+.+.++ ++++||++||++||++|+.+++.|++++++++..++.||+|+.+ +.
T Consensus 31 ~~~~~~~lP~f~l~D~dG~~v~ls----kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~ 106 (521)
T PRK14018 31 TATVPHTLSTLKTADNRPASVYLK----KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKD 106 (521)
T ss_pred cccccCCCCCeEeecCCCceeecc----CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccH
Confidence 467788999999999999999886 45678888899999999999999999999988788999999862 23
Q ss_pred HHHHHHHHHcCC-cceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEE
Q 025441 142 EQARTFSEQTKF-KGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIV 220 (252)
Q Consensus 142 ~~~~~f~~~~~l-~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fV 220 (252)
+..++|.+..++ .++++.|++..+.+.||+. .+|.+||
T Consensus 107 ~~~~~~~~~~~y~~~pV~~D~~~~lak~fgV~-----------------------------------------giPTt~I 145 (521)
T PRK14018 107 GDFQKWYAGLDYPKLPVLTDNGGTLAQSLNIS-----------------------------------------VYPSWAI 145 (521)
T ss_pred HHHHHHHHhCCCcccceeccccHHHHHHcCCC-----------------------------------------CcCeEEE
Confidence 566777777776 4799999998888877643 1457899
Q ss_pred EeCCCCeEEEEEeCC
Q 025441 221 AGPGKSNISYIHRDK 235 (252)
Q Consensus 221 id~ggg~I~~~h~~~ 235 (252)
||++ |+|++.+.+.
T Consensus 146 IDkd-GkIV~~~~G~ 159 (521)
T PRK14018 146 IGKD-GDVQRIVKGS 159 (521)
T ss_pred EcCC-CeEEEEEeCC
Confidence 9998 6999998873
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.61 E-value=7.9e-15 Score=125.14 Aligned_cols=94 Identities=15% Similarity=0.227 Sum_probs=79.8
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHHHH
Q 025441 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQA 144 (252)
Q Consensus 73 ~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~~~ 144 (252)
+.+++|++.|.+|+.++|+++ ++++||+.+|++||++|. ++++|+++++++++.|+.|++|++ ++.+.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~--~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei 79 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKY--AGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEI 79 (183)
T ss_pred CCccCcEeECCCCCEEeHHHh--CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHH
Confidence 468999999999999999998 446777777999999995 799999999999999999999988 566889
Q ss_pred HHHHH-HcCCcceeeecCC------hHHHHHc
Q 025441 145 RTFSE-QTKFKGEVYADPN------HSSYEAL 169 (252)
Q Consensus 145 ~~f~~-~~~l~fpllsDp~------~~ly~al 169 (252)
++|++ +++++||+++|-+ .-+|+-|
T Consensus 80 ~~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~L 111 (183)
T PRK10606 80 KTYCRTTWGVTFPMFSKIEVNGEGRHPLYQKL 111 (183)
T ss_pred HHHHHHccCCCceeEEEEccCCCCCCHHHHHH
Confidence 99997 7999999995533 2356655
No 46
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.2e-14 Score=120.13 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=125.7
Q ss_pred CCCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHH
Q 025441 66 SVSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQAR 145 (252)
Q Consensus 66 ~~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~ 145 (252)
++....|+.+|+|+.....| .+.+-+++++.+.||.--.+.+.|.|..|+..++++.++|++.|+++|+.|+|+.+..+
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~ 81 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHK 81 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHH
Confidence 45678899999999866555 79999999999999999999999999999999999999999999999999999987665
Q ss_pred HHHH-------HcC--CcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccc
Q 025441 146 TFSE-------QTK--FKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 146 ~f~~-------~~~--l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~g 216 (252)
.|++ ... ++|||+.|+.+++.-.|||..... . ++ .+.+...+
T Consensus 82 ~Wi~DIks~~~~~~~~~~yPIIaD~~rela~~l~MlD~~e------------------~---------~~--~~~~~T~R 132 (224)
T KOG0854|consen 82 DWIKDIKSYAKVKNHSVPYPIIADPNRELAFLLNMLDPEE------------------K---------KN--IGDGKTVR 132 (224)
T ss_pred HHHHHHHHHHhccCCCCCCCeecCCchhhhhhhcccCHhH------------------c---------CC--CCCCceEE
Confidence 5554 344 899999999999999998764321 0 00 12345688
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
+.|||||+ .+|+..+....+..| ..+|||+++.|
T Consensus 133 avfvi~pd-kKirLs~lYP~ttGR-N~dEiLRvids 166 (224)
T KOG0854|consen 133 AVFVIDPD-KKIRLSFLYPSTTGR-NFDEILRVIDS 166 (224)
T ss_pred EEEEECCC-ceEEEEEEcccccCc-CHHHHHHHHHH
Confidence 99999999 499888877655544 57799988754
No 47
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.55 E-value=2.8e-14 Score=149.14 Aligned_cols=137 Identities=16% Similarity=0.194 Sum_probs=109.4
Q ss_pred CccccCCCCCcEEec--CCCCeEeCC-CccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec---C--
Q 025441 68 SEDTKNLLDTVKVYD--VNGNAIPIS-DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP---G-- 139 (252)
Q Consensus 68 ~~~~g~~apdf~L~d--~~G~~v~ls-~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~---d-- 139 (252)
....|+.+|+|+..+ .+|+++++. ++ ++++||+.||++||++|+.+++.|+++++++++.|+.||+|+. |
T Consensus 390 ~~~~g~~~p~f~~~~~~~~g~~~~l~~~l--kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~ 467 (1057)
T PLN02919 390 SKKTATKVPEFPPKLDWLNTAPLQFRRDL--KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNE 467 (1057)
T ss_pred ccccCCcCCCCcccccccCCccccchhhc--CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEeccccccc
Confidence 456799999999876 689999984 66 4678889999999999999999999999999999999999973 2
Q ss_pred -CHHHHHHHHHHcCCcceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceE
Q 025441 140 -SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGI 218 (252)
Q Consensus 140 -~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~ 218 (252)
+.+.+++|.++++++||++.|.+.++.+.|++. .+|..
T Consensus 468 ~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~~V~-----------------------------------------~iPt~ 506 (1057)
T PLN02919 468 KDLEAIRNAVLRYNISHPVVNDGDMYLWRELGVS-----------------------------------------SWPTF 506 (1057)
T ss_pred ccHHHHHHHHHHhCCCccEEECCchHHHHhcCCC-----------------------------------------ccceE
Confidence 346788999999999999999888877776532 14578
Q ss_pred EEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHh
Q 025441 219 IVAGPGKSNISYIHRDKEAGDDPDIQDILKAC 250 (252)
Q Consensus 219 fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al 250 (252)
||||++ |+|++.+.+. .+...++++++.+
T Consensus 507 ilid~~-G~iv~~~~G~--~~~~~l~~~l~~~ 535 (1057)
T PLN02919 507 AVVSPN-GKLIAQLSGE--GHRKDLDDLVEAA 535 (1057)
T ss_pred EEECCC-CeEEEEEecc--cCHHHHHHHHHHH
Confidence 999998 6999887652 3334455555543
No 48
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.55 E-value=2.6e-14 Score=121.95 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=99.9
Q ss_pred ccccCCCCCcEEecC-----CC-----CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEE-----
Q 025441 69 EDTKNLLDTVKVYDV-----NG-----NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVAL----- 133 (252)
Q Consensus 69 ~~~g~~apdf~L~d~-----~G-----~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~v----- 133 (252)
.+.|+.+|.+++.|. +| +.++.++| .+++.|++||+.||+.|+.|++.|.++ +++|+.+
T Consensus 23 ~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l--~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 23 LQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAEL--AGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhcCCcCCceEecCCceEEEcCCcccceeccHHHc--CCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 567888888877654 33 45566676 489999999999999999999998876 6778898
Q ss_pred -EEEecCCH-----HHHHHHHHHcCCcce---eeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhcccccc
Q 025441 134 -VLIGPGSV-----EQARTFSEQTKFKGE---VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFE 204 (252)
Q Consensus 134 -VaVs~d~~-----~~~~~f~~~~~l~fp---llsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~ 204 (252)
++|+.++. ..++.|.++.+.+|| ++.|++..+..+||+..
T Consensus 97 t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~~------------------------------- 145 (184)
T TIGR01626 97 TTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLNS------------------------------- 145 (184)
T ss_pred eEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCCC-------------------------------
Confidence 99999863 346677778788888 99999888877776431
Q ss_pred ccccCCCccccceE-EEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 205 RDTVSRGGWQQGGI-IVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 205 g~~~~g~~~q~gg~-fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+|.+ ||||++ |+|+|.|.+.- ..-++++++..++
T Consensus 146 ----------~P~T~fVIDk~-GkVv~~~~G~l--~~ee~e~~~~li~ 180 (184)
T TIGR01626 146 ----------EDSAIIVLDKT-GKVKFVKEGAL--SDSDIQTVISLVN 180 (184)
T ss_pred ----------CCceEEEECCC-CcEEEEEeCCC--CHHHHHHHHHHHH
Confidence 2235 999998 69999999842 2334555555543
No 49
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.55 E-value=2.9e-14 Score=117.51 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=64.4
Q ss_pred CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC-------CCEEEEEecCCH-HHHHHHHHHcCCccee
Q 025441 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-------GVALVLIGPGSV-EQARTFSEQTKFKGEV 157 (252)
Q Consensus 86 ~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-------Gv~vVaVs~d~~-~~~~~f~~~~~l~fpl 157 (252)
..++++++ ++++|++.||++|||+|+++++.|.+++.++.+. ++.||+|+.|.. +.+++|.++.+++++.
T Consensus 16 ~~~~ls~~--kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~ 93 (146)
T cd03008 16 EREIVARL--ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLF 93 (146)
T ss_pred ccccHHHh--CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCcee
Confidence 45677888 5678999999999999999999999999888754 799999999855 5688999999966532
Q ss_pred --eec-CChHHHHHcC
Q 025441 158 --YAD-PNHSSYEALS 170 (252)
Q Consensus 158 --lsD-p~~~ly~alG 170 (252)
+.| .+..+.++||
T Consensus 94 ~p~~~~~~~~l~~~y~ 109 (146)
T cd03008 94 LPFEDEFRRELEAQFS 109 (146)
T ss_pred ecccchHHHHHHHHcC
Confidence 333 3345555554
No 50
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.53 E-value=3.6e-14 Score=113.20 Aligned_cols=71 Identities=20% Similarity=0.286 Sum_probs=60.0
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC--CCEEEEEecCCH-HHHHHHHHHcC
Q 025441 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (252)
Q Consensus 80 L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--Gv~vVaVs~d~~-~~~~~f~~~~~ 152 (252)
|.|.+|+.++++++ ++++||++||++||+.|+.+++.|+++++++++. +++|++|+.|.. +..++|.++.+
T Consensus 3 l~~~~G~~v~l~~~--~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~ 76 (131)
T cd03009 3 LLRNDGGKVPVSSL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMP 76 (131)
T ss_pred ccccCCCCccHHHh--CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCC
Confidence 46889999999998 4567899999999999999999999999999875 789999999865 45666766654
No 51
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.52 E-value=1.1e-13 Score=117.82 Aligned_cols=105 Identities=10% Similarity=0.063 Sum_probs=80.8
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSE 149 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~ 149 (252)
......++|++. +|+.++++++ + |++||++|||+|++|++.|+++++++ |+.|++|+.|...
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~--~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~------- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADW--K----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG------- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHc--e----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-------
Confidence 445578899984 8999999998 2 66689999999999999999988775 7999999987442
Q ss_pred HcCCcceeeec-CChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCCCeE
Q 025441 150 QTKFKGEVYAD-PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGKSNI 228 (252)
Q Consensus 150 ~~~l~fpllsD-p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~ggg~I 228 (252)
...||++.| ++..+.+.||... ...|.+||||++ |++
T Consensus 112 --~~~fPv~~dd~~~~~~~~~g~~~---------------------------------------~~iPttfLId~~-G~i 149 (181)
T PRK13728 112 --DTAFPEALPAPPDVMQTFFPNIP---------------------------------------VATPTTFLVNVN-TLE 149 (181)
T ss_pred --CCCCceEecCchhHHHHHhCCCC---------------------------------------CCCCeEEEEeCC-CcE
Confidence 368999885 5555555554210 125689999998 588
Q ss_pred EE-EEeC
Q 025441 229 SY-IHRD 234 (252)
Q Consensus 229 ~~-~h~~ 234 (252)
.+ .|++
T Consensus 150 ~~~~~~G 156 (181)
T PRK13728 150 ALPLLQG 156 (181)
T ss_pred EEEEEEC
Confidence 75 6876
No 52
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.44 E-value=8.6e-13 Score=105.80 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=59.0
Q ss_pred cCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC--CCEEEEEecCCH-HHHHHHHHHcC
Q 025441 82 DVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV-EQARTFSEQTK 152 (252)
Q Consensus 82 d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--Gv~vVaVs~d~~-~~~~~f~~~~~ 152 (252)
|.+ +.++++++ ++++||++||++||+.|+++++.|+++++++++. +++|++|+.+.. +.+++|.++++
T Consensus 5 ~~~-~~v~l~~~--~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~ 75 (132)
T cd02964 5 DGE-GVVPVSAL--EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMP 75 (132)
T ss_pred cCC-ccccHHHh--CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCC
Confidence 444 59999998 5688999999999999999999999999999875 799999998754 68889999986
No 53
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=8.2e-12 Score=104.56 Aligned_cols=144 Identities=15% Similarity=0.132 Sum_probs=112.5
Q ss_pred cccCCCCCcE---EecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHH
Q 025441 70 DTKNLLDTVK---VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQART 146 (252)
Q Consensus 70 ~~g~~apdf~---L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~ 146 (252)
....++|+|+ +.|..-+.++|+++ .++.+|+.||...+...|-.|+..+++.+++|++.|++|+++|.|+...+.+
T Consensus 5 ~~~~p~p~fk~~aVVdG~f~e~~L~dy-~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlA 83 (196)
T KOG0852|consen 5 VVFKPAPDFKGTAVVDGEFKEIKLSDY-KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLA 83 (196)
T ss_pred ccCCCCCCcceeEEEcCcceEEeehhh-cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhh
Confidence 4455668886 44555578999998 4577888888899999999999999999999999999999999999988888
Q ss_pred HH----HHcCCc---ceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEE
Q 025441 147 FS----EQTKFK---GEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGII 219 (252)
Q Consensus 147 f~----~~~~l~---fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~f 219 (252)
|+ ++.|+. .|+++|+++++.+.||+.... +|..++|.|
T Consensus 84 W~ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~-----------------------------------~G~~lRglf 128 (196)
T KOG0852|consen 84 WINTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKED-----------------------------------EGIALRGLF 128 (196)
T ss_pred HhcCchhhCCcCccccceeeccchhhHHhcCceecC-----------------------------------CCcceeeeE
Confidence 87 444555 899999999999999987542 123577999
Q ss_pred EEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 220 VAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 220 Vid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
|||++ |.++-.-.+ +..---+++|+|+.++
T Consensus 129 IId~~-gi~R~it~N-DlpvgRSVdE~lRLvq 158 (196)
T KOG0852|consen 129 IIDPD-GILRQITIN-DLPVGRSVDETLRLVQ 158 (196)
T ss_pred EEccc-cceEEeeec-ccCCCccHHHHHHHHH
Confidence 99998 588765554 2333345677776543
No 54
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=8e-11 Score=96.53 Aligned_cols=139 Identities=11% Similarity=0.176 Sum_probs=115.7
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
.+++|+++|+|++.+.+.+.+++++. .+++.||..|+.--.|.|-.+.+.+++....+. ++.|+.||.|-+...++|
T Consensus 17 ~~~vGd~ap~ftl~~~dL~~v~l~~~-~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPFAq~Rf 93 (158)
T COG2077 17 EPQVGDKAPDFTLVGKDLNDVSLADF-AGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPFAQKRF 93 (158)
T ss_pred CCccCCcCCceEEEcCcccceecccc-CCceEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChhHHhhh
Confidence 47999999999999999999999998 567778888899999999999999998776543 489999999999999999
Q ss_pred HHHcCCc-ceeeecC-ChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccceEEEEeCCC
Q 025441 148 SEQTKFK-GEVYADP-NHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQGGIIVAGPGK 225 (252)
Q Consensus 148 ~~~~~l~-fpllsDp-~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~gg~fVid~gg 225 (252)
+...|+. .-.+||- ++.+.++||+.-... |- .++.-+++||+|.+
T Consensus 94 C~aeGi~nv~~lSd~r~~~Fge~yGv~I~eg----pL----------------------------~gLlARaV~V~De~- 140 (158)
T COG2077 94 CGAEGIENVITLSDFRDRAFGENYGVLINEG----PL----------------------------AGLLARAVFVLDEN- 140 (158)
T ss_pred hhhcCcccceEhhhhhhhhhhHhhCEEeccc----cc----------------------------cCeeeeEEEEEcCC-
Confidence 9999998 6678884 566778888654321 00 12456799999988
Q ss_pred CeEEEEEeCCCCCCCCC
Q 025441 226 SNISYIHRDKEAGDDPD 242 (252)
Q Consensus 226 g~I~~~h~~~~~~D~~~ 242 (252)
|+|.|...-.+..++|+
T Consensus 141 g~V~y~elv~eit~ePn 157 (158)
T COG2077 141 GKVTYSELVPEITEEPN 157 (158)
T ss_pred CcEEEEEccchhhcCCC
Confidence 69999999888888886
No 55
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.24 E-value=9.5e-11 Score=88.07 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=53.7
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHH-hCCCEEEEEecCCH-HHHHHHHHHcCCcceeeec
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSV-EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~-~~Gv~vVaVs~d~~-~~~~~f~~~~~l~fpllsD 160 (252)
+++++++||+.||+.|+.+++.|.++++++. +.++++|+|+.|.. +..+++.++.+.++..+..
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~ 66 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPF 66 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEET
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEee
Confidence 4678889999999999999999999999998 78899999999875 7889999998777765543
No 56
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.10 E-value=6.4e-10 Score=92.36 Aligned_cols=49 Identities=16% Similarity=0.263 Sum_probs=40.9
Q ss_pred CCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 84 ~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
.|+.+.++++ .|++||++||++|++|++.|+++++++ |+.|++|+.|..
T Consensus 43 ~G~~~~l~~~------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 3777777665 288899999999999999999988765 789999998753
No 57
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=9e-09 Score=84.94 Aligned_cols=150 Identities=16% Similarity=0.226 Sum_probs=114.6
Q ss_pred CccccCCCCC--cEEe-cCC----CCeEeCCCccCCCeEEEEEEcCCCCHh-hHHHHHHHHHhHHHHHhCCCE-EEEEec
Q 025441 68 SEDTKNLLDT--VKVY-DVN----GNAIPISDLWKDRKAVVAFARHFGCVL-CRKRADYLAAKKDVMDASGVA-LVLIGP 138 (252)
Q Consensus 68 ~~~~g~~apd--f~L~-d~~----G~~v~ls~l~~~~~vVLvF~R~~~Cp~-C~~el~~L~~~~~~~~~~Gv~-vVaVs~ 138 (252)
...+|+.+|+ .++. |.. +.++++++|.++++++|+=.++++.|. |+.+++-+.+..++|+.+|++ |+.|+.
T Consensus 8 ~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvSV 87 (171)
T KOG0541|consen 8 PIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVSV 87 (171)
T ss_pred cccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEec
Confidence 3578999999 4432 222 238999999999999999999999999 688999999999999999987 778889
Q ss_pred CCHHHHHHHHHHcCCc--ceeeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCccccc
Q 025441 139 GSVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGWQQG 216 (252)
Q Consensus 139 d~~~~~~~f~~~~~l~--fpllsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~q~g 216 (252)
+++...++|.+.++-. ..+++|++.++.+++|+...+...+ .|+|. -+
T Consensus 88 nDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lgleld~~d~~-------------~g~RS-----------------~R 137 (171)
T KOG0541|consen 88 NDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLELDLSDKL-------------LGVRS-----------------RR 137 (171)
T ss_pred CcHHHHHHHHhhcCccceEEEEecCCCceeeeccceeeecccc-------------Ccccc-----------------cc
Confidence 9999999999998875 5689999999999999987653211 12221 11
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCC--CCCHHHHHHH
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGD--DPDIQDILKA 249 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D--~~~~~eIL~a 249 (252)
=..|++ + |+|.+..+..+..| --..++||..
T Consensus 138 ~a~vve-n-gkV~~~nvE~~g~~~t~ssa~~il~~ 170 (171)
T KOG0541|consen 138 YALVVE-N-GKVTVVNVEEGGTDFTVSSAEDILKQ 170 (171)
T ss_pred EEEEEe-C-CeEEEEEeccCCCceEEecHHHHhhc
Confidence 255666 4 58999999877774 2345566554
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.81 E-value=7.8e-08 Score=81.19 Aligned_cols=100 Identities=14% Similarity=0.211 Sum_probs=75.7
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCC-HhhHHHHHHHHHhHHHHHhC--CCEEEEEecCC----HHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGC-VLCRKRADYLAAKKDVMDAS--GVALVLIGPGS----VEQ 143 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~C-p~C~~el~~L~~~~~~~~~~--Gv~vVaVs~d~----~~~ 143 (252)
.....|+|+|.|.+|+.++++++ +++++|++|-.+.| -.|-..+..|+++.+++.+. .+++|.||.|+ ++.
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~--~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~ 105 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDL--KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEV 105 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGG--TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHH
T ss_pred CCccCCCcEEEcCCCCEecHHHh--CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHH
Confidence 45678899999999999999998 55677777788888 58999999999999988865 68899999764 578
Q ss_pred HHHHHHHcCCcceeeec---CChHHHHHcCCc
Q 025441 144 ARTFSEQTKFKGEVYAD---PNHSSYEALSFV 172 (252)
Q Consensus 144 ~~~f~~~~~l~fpllsD---p~~~ly~alGv~ 172 (252)
+++|.++++..+.-+.- .-.++.+.|++.
T Consensus 106 L~~Y~~~~~~~~~~ltg~~~~i~~l~~~~~v~ 137 (174)
T PF02630_consen 106 LKKYAKKFGPDFIGLTGSREEIEELAKQFGVY 137 (174)
T ss_dssp HHHHHHCHTTTCEEEEEEHHHHHHHHHHCTHC
T ss_pred HHHHHHhcCCCcceeEeCHHHHHHHHHHHHhh
Confidence 99999998877654331 123445555543
No 59
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=5.9e-08 Score=79.72 Aligned_cols=107 Identities=15% Similarity=0.111 Sum_probs=94.3
Q ss_pred ccccCCCCCcEEecC------CC-CeEeCCCccCCCeEEEEEEcCCCCHhhHH-HHHHHHHhHHHHHhCCCE-EEEEecC
Q 025441 69 EDTKNLLDTVKVYDV------NG-NAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVA-LVLIGPG 139 (252)
Q Consensus 69 ~~~g~~apdf~L~d~------~G-~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~-el~~L~~~~~~~~~~Gv~-vVaVs~d 139 (252)
..+|+++|+.+++.. +| ..++..+|++++++||.-+++++.|.|-. +++.+.+++++|+++|+. |++||..
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 478999999998654 23 46778889999999999999999999998 999999999999999987 8888999
Q ss_pred CHHHHHHHHHHcCCc--ceeeecCChHHHHHcCCcccc
Q 025441 140 SVEQARTFSEQTKFK--GEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 140 ~~~~~~~f~~~~~l~--fpllsDp~~~ly~alGv~~~~ 175 (252)
+.....+|.+..+.. ..+++|.+.++-+++|+....
T Consensus 83 D~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~d~ 120 (165)
T COG0678 83 DAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLVDK 120 (165)
T ss_pred cHHHHHHHHHhcCCCccEEEecCCCchhhhhcCceeec
Confidence 999999999999987 458999999999999987654
No 60
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.67 E-value=6.2e-08 Score=87.49 Aligned_cols=51 Identities=22% Similarity=0.343 Sum_probs=41.8
Q ss_pred CeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 86 NAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 86 ~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
+...++++ .++.+|++|++.||++|+.+++.|+++.+++ |+.|++|+.|..
T Consensus 157 ~~~~l~~l--~~k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~ 207 (271)
T TIGR02740 157 KDRVMKDL--AKKSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGG 207 (271)
T ss_pred HHHHHHHh--cCCeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCC
Confidence 44677777 3557888889999999999999999887764 799999998854
No 61
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.57 E-value=6.4e-07 Score=77.90 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=93.9
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCH-hhHHHHHHHHHhHHHHH---hCCCEEEEEecCC----HHHHHHHH
Q 025441 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMD---ASGVALVLIGPGS----VEQARTFS 148 (252)
Q Consensus 77 df~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp-~C~~el~~L~~~~~~~~---~~Gv~vVaVs~d~----~~~~~~f~ 148 (252)
+|+|.|.+|+.+++.++ +++..|+||-.+.|| .|...+..|....+++. +..++++.|+.|+ ++.+++|.
T Consensus 49 ~f~l~d~~G~~~~~~~l--~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~ 126 (207)
T COG1999 49 DFELTDQDGKPFTLKDL--KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYA 126 (207)
T ss_pred ceeeecCCCCEeecccc--CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHh
Confidence 89999999999999999 455666666778887 69999999999998887 4567889999764 57888888
Q ss_pred H-HcCCcceeeec---CChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCCCcc-ccceEEEEeC
Q 025441 149 E-QTKFKGEVYAD---PNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSRGGW-QQGGIIVAGP 223 (252)
Q Consensus 149 ~-~~~l~fpllsD---p~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g~~~-q~gg~fVid~ 223 (252)
+ ...-.+.-+.. .-.++.++|++.........+ +.... --...|++|+
T Consensus 127 ~~~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~---------------------------~~y~~~Hs~~~~lid~ 179 (207)
T COG1999 127 ELNFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDS---------------------------QNYTIDHSAGFYLIDA 179 (207)
T ss_pred cccCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCC---------------------------CCceeeeeeEEEEECC
Confidence 8 32222433333 335667777766431100000 00001 1346889999
Q ss_pred CCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 224 GKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 224 ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+ |++...+..... .++|++.++
T Consensus 180 ~-G~~~~~~~~~~~-----~~~i~~~l~ 201 (207)
T COG1999 180 D-GRFLGTYDYGEP-----PEEIAADLK 201 (207)
T ss_pred C-CeEEEEecCCCC-----hHHHHHHHH
Confidence 8 688877765333 667776654
No 62
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.3e-06 Score=72.27 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=73.5
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHHHHH
Q 025441 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQAR 145 (252)
Q Consensus 74 ~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~~~~ 145 (252)
.+-||++.|.+|+.++|+++ ++++|||.--|+-|.+-- |...|+.+|+++++.|..|+++-+ ++.++++
T Consensus 4 ~~yd~~~~~~~G~~~~l~~~--~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~ 80 (162)
T COG0386 4 SIYDFSVKDIDGEPVSLSDY--KGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIA 80 (162)
T ss_pred ccccceeeccCCCCccHHHh--CCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHH
Confidence 46789999999999999998 677888888999999988 889999999999999999999975 4568999
Q ss_pred HHHHH-cCCcceeeec
Q 025441 146 TFSEQ-TKFKGEVYAD 160 (252)
Q Consensus 146 ~f~~~-~~l~fpllsD 160 (252)
+|++. ++.+||+++-
T Consensus 81 ~fC~~~YgVtFp~f~K 96 (162)
T COG0386 81 KFCQLNYGVTFPMFSK 96 (162)
T ss_pred HHHHhccCceeeeeeE
Confidence 99965 5689999863
No 63
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.52 E-value=6.3e-08 Score=79.15 Aligned_cols=84 Identities=13% Similarity=0.137 Sum_probs=60.8
Q ss_pred EEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC---Ccc
Q 025441 79 KVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKG 155 (252)
Q Consensus 79 ~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~---l~f 155 (252)
++.|.+++...+.+....++.+|++||+.||+.|+..++.|.++.+++.. .+.++.|..+... ....+++++ +|.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~-~~~~~~~~~V~~iPt 79 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPK-WLPEIDRYRVDGIPH 79 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcc-cHHHHHHcCCCCCCE
Confidence 45566777777777766677888889999999999999999999888754 4788888877542 123444555 444
Q ss_pred eeeecCChH
Q 025441 156 EVYADPNHS 164 (252)
Q Consensus 156 pllsDp~~~ 164 (252)
-++.|++.+
T Consensus 80 ~v~~~~~G~ 88 (142)
T cd02950 80 FVFLDREGN 88 (142)
T ss_pred EEEECCCCC
Confidence 477776543
No 64
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.51 E-value=1.5e-07 Score=78.12 Aligned_cols=95 Identities=13% Similarity=0.123 Sum_probs=74.1
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCH-HHHHHHHHHcCCc
Q 025441 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV-EQARTFSEQTKFK 154 (252)
Q Consensus 78 f~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~-~~~~~f~~~~~l~ 154 (252)
..|.+.+|..+..++.++ +++|.+.|.+.|||+||..-+.|.+.|+++++.+ ..||.||.|.. +...+|..++..+
T Consensus 15 ~~l~~~~~~~~~~~~~l~-gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~ 93 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQ-GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGD 93 (157)
T ss_pred CeeeccCCccchHhHhhC-CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCC
Confidence 678888898888886654 5899999999999999999999999999998765 77999999876 6778888875544
Q ss_pred c---eeeecCChHHHHHcCCcc
Q 025441 155 G---EVYADPNHSSYEALSFVS 173 (252)
Q Consensus 155 f---pllsDp~~~ly~alGv~~ 173 (252)
- |..-|..+++-+.|++..
T Consensus 94 W~~iPf~d~~~~~l~~ky~v~~ 115 (157)
T KOG2501|consen 94 WLAIPFGDDLIQKLSEKYEVKG 115 (157)
T ss_pred eEEecCCCHHHHHHHHhcccCc
Confidence 2 334444556666666553
No 65
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.44 E-value=1.1e-06 Score=68.88 Aligned_cols=80 Identities=15% Similarity=0.269 Sum_probs=67.9
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHHHHHHHH
Q 025441 77 TVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVEQARTFS 148 (252)
Q Consensus 77 df~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~~~~~f~ 148 (252)
||++.|.+|+.++|+++ +++++||.-=++-|++-. +..+|+++++++.+.|..|+++-+ ++.+.+++|+
T Consensus 3 df~~~~~~G~~v~l~~y--~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKY--KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GSEEEBTTSSEEEGGGG--TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred ceeeeCCCCCEECHHHc--CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 78999999999999998 445566666799999999 999999999999999999999976 3457899998
Q ss_pred HH-cCCcceeee
Q 025441 149 EQ-TKFKGEVYA 159 (252)
Q Consensus 149 ~~-~~l~fplls 159 (252)
.. ++.+|||+.
T Consensus 80 ~~~~~~~F~vf~ 91 (108)
T PF00255_consen 80 KEKFGVTFPVFE 91 (108)
T ss_dssp CHCHT-SSEEBS
T ss_pred HhccCCcccceE
Confidence 87 678899875
No 66
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.44 E-value=8e-07 Score=68.33 Aligned_cols=55 Identities=11% Similarity=0.016 Sum_probs=43.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK 152 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~ 152 (252)
+++.||+.|+++||+.|+..++.|.++.+++ .++.++.|..+......+++++++
T Consensus 14 ~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~ 68 (103)
T cd02985 14 KGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREK 68 (103)
T ss_pred CCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcC
Confidence 3678899999999999999999999998887 568888898876544455555544
No 67
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=98.42 E-value=1.1e-06 Score=69.52 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=33.8
Q ss_pred CCC-eEEEEEEcCCCCHhhHHHHHHHH---HhHHHHHhCCCEEEEEecCCH
Q 025441 95 KDR-KAVVAFARHFGCVLCRKRADYLA---AKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 95 ~~~-~vVLvF~R~~~Cp~C~~el~~L~---~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
+.+ +.++++|++.||++|+...+.+. ++.+.++ .++.++.|..+..
T Consensus 11 ~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 11 ADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred HcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 345 67888889999999999998875 3444443 4677888877654
No 68
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=98.40 E-value=3.5e-06 Score=73.14 Aligned_cols=93 Identities=14% Similarity=0.287 Sum_probs=75.6
Q ss_pred CcEEecCCCCeEeCCCccCCCeEEEEE--Ec----CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHH
Q 025441 77 TVKVYDVNGNAIPISDLWKDRKAVVAF--AR----HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 77 df~L~d~~G~~v~ls~l~~~~~vVLvF--~R----~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~ 150 (252)
+..+...+| +++|.+|++++..||+- .+ ..+||.|...+..+......|.+.++.+++||..+.+.+..|+++
T Consensus 48 ~Y~F~g~~G-~v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~~~i~afk~r 126 (211)
T PF05988_consen 48 DYVFDGPDG-PVSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPLEKIEAFKRR 126 (211)
T ss_pred CeEEeCCCC-cccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCHHHHHHHHHh
Confidence 455555566 59999999887655443 22 359999999999998888999999999999999999999999999
Q ss_pred cCCcceeeecCChHHHHHcC
Q 025441 151 TKFKGEVYADPNHSSYEALS 170 (252)
Q Consensus 151 ~~l~fpllsDp~~~ly~alG 170 (252)
.|++||.||.-+..+-..|+
T Consensus 127 mGW~~pw~Ss~gs~Fn~D~~ 146 (211)
T PF05988_consen 127 MGWTFPWYSSYGSDFNYDFG 146 (211)
T ss_pred cCCCceEEEcCCCccccccc
Confidence 99999999976554444444
No 69
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=8.2e-06 Score=68.21 Aligned_cols=87 Identities=16% Similarity=0.206 Sum_probs=74.1
Q ss_pred ccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--------CCHH
Q 025441 71 TKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--------GSVE 142 (252)
Q Consensus 71 ~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--------d~~~ 142 (252)
.-..+-||++.|.+|+.|+|+.+ ++++||+.-=++.|.+-..+-.+|++++++++..|..|++.-+ ++.+
T Consensus 10 ~~~siydf~~~d~~G~~v~l~~y--rGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~ 87 (171)
T KOG1651|consen 10 EKGSIYDFSAKDLDGEYVSLSQY--RGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNE 87 (171)
T ss_pred hhcceeeeEEecCCCCCccHHHh--CCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcH
Confidence 34567899999999999999999 6788888888999999998888999999999999999999976 3345
Q ss_pred HHHHHH-HHcCCcceeee
Q 025441 143 QARTFS-EQTKFKGEVYA 159 (252)
Q Consensus 143 ~~~~f~-~~~~l~fplls 159 (252)
++..|+ .+++..|+|+.
T Consensus 88 Ei~~f~~~r~~~~f~if~ 105 (171)
T KOG1651|consen 88 EILNFVKVRYGAEFPIFQ 105 (171)
T ss_pred HHHHHHHhccCCCCccEe
Confidence 777776 67778888775
No 70
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.29 E-value=1.1e-06 Score=67.29 Aligned_cols=53 Identities=8% Similarity=0.173 Sum_probs=42.5
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
..++.+|+.|++.||++|+..++.|.++++++....+.++.|..|..+.+++|
T Consensus 15 ~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~ 67 (102)
T cd02948 15 SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRY 67 (102)
T ss_pred ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHc
Confidence 34567888889999999999999999998888755678888888865555444
No 71
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.17 E-value=3.8e-06 Score=64.45 Aligned_cols=42 Identities=7% Similarity=0.017 Sum_probs=35.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
+++++|+.|++.||++|+..++.|.++.+++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 45678888899999999999999999988875 5778888665
No 72
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.15 E-value=1.1e-05 Score=61.94 Aligned_cols=53 Identities=15% Similarity=0.283 Sum_probs=32.4
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHH--hCCCEEEEEecCCHH-HHHHHHH
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMD--ASGVALVLIGPGSVE-QARTFSE 149 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~--~~Gv~vVaVs~d~~~-~~~~f~~ 149 (252)
++.+|++|...|||+|+..-+++.+..+-.+ +.++.++.+..++.. ....+.+
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 60 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLD 60 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccc
Confidence 4455555579999999988887776443222 336888888887664 3334443
No 73
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.01 E-value=2.2e-05 Score=61.15 Aligned_cols=46 Identities=13% Similarity=0.160 Sum_probs=40.2
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
.++++|++|++.||+.|+...+.+.++.++++..++.+..|..+..
T Consensus 23 ~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~ 68 (111)
T cd02963 23 FKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHE 68 (111)
T ss_pred CCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecccc
Confidence 4567888889999999999999999999999877888899988754
No 74
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.99 E-value=2.1e-05 Score=60.89 Aligned_cols=44 Identities=9% Similarity=0.175 Sum_probs=38.6
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
++.++++|++.||++|++..+.+.++...+++.++.+..|..+.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 46777888899999999999999999988887788999998875
No 75
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.94 E-value=1.8e-05 Score=59.16 Aligned_cols=45 Identities=9% Similarity=-0.052 Sum_probs=36.9
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
+..+|++|++.||+.|+...+.|.++..++.. .+.++.|..+...
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~ 56 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQP 56 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCH
Confidence 56788888999999999999999999888754 4677788777643
No 76
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.89 E-value=4e-05 Score=58.55 Aligned_cols=44 Identities=14% Similarity=0.089 Sum_probs=35.8
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGS 140 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~ 140 (252)
+..++++|++.||++|+..++.|.++..+++..+ +.+..+..+.
T Consensus 15 ~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~ 60 (104)
T cd03000 15 EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA 60 (104)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc
Confidence 4578899999999999999999999998887655 5566666654
No 77
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.82 E-value=1.6e-05 Score=59.77 Aligned_cols=46 Identities=9% Similarity=0.040 Sum_probs=37.3
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh--CCCEEEEEecCCHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA--SGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~--~Gv~vVaVs~d~~~ 142 (252)
+++ +++.|++.||+.|+..++.++++..+++. ..+.++.|.++...
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 16 EGN-HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred cCC-EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 445 77778899999999999999999988876 46778888877543
No 78
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.82 E-value=3.3e-05 Score=61.11 Aligned_cols=71 Identities=14% Similarity=0.234 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH--HHHHHHHHHc-CCcceeeecCChHHHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQT-KFKGEVYADPNHSSYE 167 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~--~~~~~f~~~~-~l~fpllsDp~~~ly~ 167 (252)
.++.||++|++.||+.|+...+.+.+..... +....++.|..+.. ...+.|.... ++|.-++.|++.++-+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~-~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~ 91 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEIS-ELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHP 91 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHH-hhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCch
Confidence 3456777778999999999999988865533 23445555555432 2234443221 2677788888766544
No 79
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.80 E-value=4.9e-05 Score=66.24 Aligned_cols=92 Identities=14% Similarity=0.280 Sum_probs=77.4
Q ss_pred ecCCCCeEeCCCccCCCeEEEE--EEcC----CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 81 YDVNGNAIPISDLWKDRKAVVA--FARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 81 ~d~~G~~v~ls~l~~~~~vVLv--F~R~----~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.|....+.+|.+|++++..||| |+.+ ..||.|..-+..+.-...-|+..++.+++||..+.+.+..|.++.|+.
T Consensus 57 Fe~~~G~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~rmGW~ 136 (247)
T COG4312 57 FETENGKKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKRRMGWQ 136 (247)
T ss_pred eecCCcchhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHHhcCCc
Confidence 3444458999999987655443 3333 489999999999998899999999999999999999999999999999
Q ss_pred ceeeecCChHHHHHcCCc
Q 025441 155 GEVYADPNHSSYEALSFV 172 (252)
Q Consensus 155 fpllsDp~~~ly~alGv~ 172 (252)
||.+|+.+..+-..|.+.
T Consensus 137 f~w~Ss~~s~Fn~Df~vs 154 (247)
T COG4312 137 FPWVSSTDSDFNRDFQVS 154 (247)
T ss_pred ceeEeccCcccccccccc
Confidence 999999888877777654
No 80
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.80 E-value=7.5e-05 Score=56.89 Aligned_cols=66 Identities=12% Similarity=0.134 Sum_probs=45.6
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHH---HHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCCc-ce--eeecC
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GE--VYADP 161 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l~-fp--llsDp 161 (252)
+.++.+|+.|++.||++|+...+.+ .++.+.+.+ ++.++.|..+.. ....++++++++. +| ++.|+
T Consensus 9 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~ 81 (104)
T cd02953 9 AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGP 81 (104)
T ss_pred HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECC
Confidence 3456777788899999999998777 456666655 788888887642 3345666776653 33 55564
No 81
>PRK10996 thioredoxin 2; Provisional
Probab=97.78 E-value=1.2e-05 Score=65.45 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=40.8
Q ss_pred eCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 89 ~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
.+.++.+.++.++++|++.||++|+...+.|.++..++.. ++.++.|..+...
T Consensus 44 ~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~ 96 (139)
T PRK10996 44 TLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAER 96 (139)
T ss_pred HHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCH
Confidence 4444555677889999999999999999999998877643 5777788776543
No 82
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.78 E-value=4e-05 Score=58.10 Aligned_cols=58 Identities=10% Similarity=0.048 Sum_probs=43.7
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ce
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fp 156 (252)
.+++.++++|++.||+.|+...+.+.++..+++. .+.+..|.++... ..++++++. +|
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~---~~~~~~~v~~~P 74 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR---MLCRSQGVNSYP 74 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH---HHHHHcCCCccC
Confidence 3456788888999999999999999999888864 3788889988643 344555553 44
No 83
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=97.77 E-value=0.00021 Score=63.22 Aligned_cols=61 Identities=13% Similarity=0.105 Sum_probs=54.4
Q ss_pred CccccCCCCCcEEecCCCCe-EeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh
Q 025441 68 SEDTKNLLDTVKVYDVNGNA-IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~-v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~ 128 (252)
....|..|||..|.+.+|+. .++.|+.++++.+|++|...-||+=+..+.+++++.++|.+
T Consensus 72 ~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 72 EAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred ceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 45789999999999999998 99999987777777788888899999999999999998875
No 84
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.77 E-value=8.5e-05 Score=56.62 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=45.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ce--eeecCCh
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNH 163 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fp--llsDp~~ 163 (252)
.+..+|+.|++.||+.|+...+.+.++..++. ..+.++.|.++..+ ..++++++++. +| ++.+++.
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~-~~~~~~~v~~~~~~-~~~~~~~~~i~~~Pt~~~~~~~~ 85 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELD-GLVQVAAVDCDEDK-NKPLCGKYGVQGFPTLKVFRPPK 85 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhc-CCceEEEEecCccc-cHHHHHHcCCCcCCEEEEEeCCC
Confidence 35568888899999999999999999888775 35788888888621 23344444443 33 4555554
No 85
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.76 E-value=2.9e-05 Score=58.70 Aligned_cols=47 Identities=19% Similarity=0.257 Sum_probs=38.2
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
+..++++++|++.||+.|+...+.++++..++.. ++.++.|..+...
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~ 57 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQ 57 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCH
Confidence 4567888999999999999999999998877653 5778888877543
No 86
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.70 E-value=0.00012 Score=60.79 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=40.1
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
++.+|+.|++.||+.|+...+.|+++.+++...++.++.|..+...
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~ 92 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFP 92 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCH
Confidence 4678888899999999999999999998887677999999987654
No 87
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.69 E-value=3e-05 Score=58.37 Aligned_cols=64 Identities=13% Similarity=0.110 Sum_probs=43.3
Q ss_pred CccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC-CCEEEEEecCCHHHHHHHHHHcCC-cce
Q 025441 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-GVALVLIGPGSVEQARTFSEQTKF-KGE 156 (252)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-Gv~vVaVs~d~~~~~~~f~~~~~l-~fp 156 (252)
++..+++.+++.|++.||+.|+...+.+.++...+.+. .+.++.|..+.. ....+.+++++ .+|
T Consensus 12 ~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~i~~~P 77 (104)
T cd02997 12 KFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYNVKGFP 77 (104)
T ss_pred HHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCCCcccc
Confidence 33344557888889999999999999999998888753 355555666542 12344455555 344
No 88
>PRK09381 trxA thioredoxin; Provisional
Probab=97.68 E-value=5.4e-05 Score=58.10 Aligned_cols=47 Identities=13% Similarity=0.069 Sum_probs=38.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ 143 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~ 143 (252)
.+..+++.|++.|||.|+..++.|+++..++.. ++.++.|..+....
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG 66 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh
Confidence 345678888999999999999999999888754 58888888876543
No 89
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.68 E-value=0.00017 Score=54.77 Aligned_cols=54 Identities=11% Similarity=0.087 Sum_probs=41.1
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
.++.+|+.|++.||+.|+...+.+.++..++. .++.+..|.++... ..++++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~---~~~~~~~i 71 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYE---SLCQQANI 71 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchH---HHHHHcCC
Confidence 34578888899999999999999999988874 35788888888643 33444454
No 90
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.67 E-value=8.2e-05 Score=55.85 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh-CCCEEEEEecCC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~Gv~vVaVs~d~ 140 (252)
++.+|++|++.||+.|++..+.+.++..+++. .++.++.|..+.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 44678888899999999999999999888763 357777777765
No 91
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.66 E-value=0.00017 Score=56.83 Aligned_cols=47 Identities=9% Similarity=-0.059 Sum_probs=38.8
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
.+.+.+|+.|++.||++|+..++.+.++.+++++. +.++.|.++...
T Consensus 27 ~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~ 73 (113)
T cd03006 27 TDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQ 73 (113)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCCh
Confidence 45677888889999999999999999998888543 778888887554
No 92
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.65 E-value=6.5e-05 Score=56.10 Aligned_cols=67 Identities=9% Similarity=0.068 Sum_probs=46.3
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC-CEEEEEecCCHHHHHHHHHHcCCc-ce--eeecCChH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQARTFSEQTKFK-GE--VYADPNHS 164 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G-v~vVaVs~d~~~~~~~f~~~~~l~-fp--llsDp~~~ 164 (252)
.+++.+++.|++.||+.|+...+.++++...++..+ +.++.|..+.. ..+.+++++. +| ++.+.+..
T Consensus 11 ~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~i~~~P~~~~~~~~~~ 81 (102)
T TIGR01126 11 LSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAE---KDLASRFGVSGFPTIKFFPKGKK 81 (102)
T ss_pred ccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccch---HHHHHhCCCCcCCEEEEecCCCc
Confidence 456778888899999999999999998888876554 66666666543 3344555543 34 45555544
No 93
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.64 E-value=0.0001 Score=56.56 Aligned_cols=49 Identities=6% Similarity=-0.020 Sum_probs=37.4
Q ss_pred ccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC-----CCEEEEEecCCH
Q 025441 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-----GVALVLIGPGSV 141 (252)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-----Gv~vVaVs~d~~ 141 (252)
..+..+.+|++|++.||+.|+...+.++++..++++. .+.+..|.++..
T Consensus 14 ~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 14 ILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred HHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 3445677888999999999999999999988877542 255666777653
No 94
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.61 E-value=0.00021 Score=53.60 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh-CCCEEEEEecCCHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~Gv~vVaVs~d~~~ 142 (252)
.++.++++|++.||+.|+...+.+.++.+.+++ ..+.+..|..+..+
T Consensus 17 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 64 (104)
T cd02995 17 SDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAND 64 (104)
T ss_pred CCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchh
Confidence 346788888999999999999999999988876 46777888877643
No 95
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.60 E-value=9.6e-05 Score=58.92 Aligned_cols=58 Identities=14% Similarity=0.238 Sum_probs=43.7
Q ss_pred cCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH--------HHHHHHHHHcCCc
Q 025441 94 WKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--------EQARTFSEQTKFK 154 (252)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~--------~~~~~f~~~~~l~ 154 (252)
...+..++++|.+.|||+|+...+.|.++.++ .++.++.|..+.. ..+.+|.+++++.
T Consensus 20 i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~ 85 (122)
T TIGR01295 20 LDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP 85 (122)
T ss_pred HHcCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCc
Confidence 34567788889999999999999999988765 5577888888732 2455666666543
No 96
>PTZ00051 thioredoxin; Provisional
Probab=97.59 E-value=4.3e-05 Score=57.25 Aligned_cols=46 Identities=11% Similarity=0.137 Sum_probs=36.1
Q ss_pred ccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
+.+.++.++++|++.||+.|+...+.|.++..++ .++.++.|..+.
T Consensus 14 ~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~--~~~~~~~vd~~~ 59 (98)
T PTZ00051 14 TLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEY--TKMVFVKVDVDE 59 (98)
T ss_pred HHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHc--CCcEEEEEECcc
Confidence 3445678888889999999999999998877754 357777777764
No 97
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.57 E-value=0.00016 Score=54.53 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.9
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
+|+.|++.||++|+...+.+.++..+++..++.+..|..+..
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~ 60 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQE 60 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCC
Confidence 568889999999999999999998877666788888776643
No 98
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.54 E-value=0.00027 Score=55.97 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=35.0
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
.+.+|+.|++.||++|+.-.+.|.++.+++.+. +.++-|..|...
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~ 58 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVP 58 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCH
Confidence 457888889999999999999998888776432 567777777543
No 99
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.54 E-value=0.00026 Score=56.08 Aligned_cols=55 Identities=11% Similarity=0.152 Sum_probs=42.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
++++||+.|.+.||++|+...+-|.++.+++.+. +.++-|..|. +.++.+++++.
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDe---v~dva~~y~I~ 67 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDK---VPVYTQYFDIS 67 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccc---cHHHHHhcCce
Confidence 4678888899999999999999999998888443 7788888774 44566665653
No 100
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.54 E-value=0.00037 Score=52.35 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=35.0
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
.++.+|+.|++.||+.|+...+.+.++..++.. .+.++.|..+..
T Consensus 17 ~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~ 61 (103)
T cd03001 17 SDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVH 61 (103)
T ss_pred CCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcch
Confidence 355566677799999999999999998877653 477788877654
No 101
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.52 E-value=0.00012 Score=53.75 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=47.9
Q ss_pred ccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHH-hCCCEEEEEecCCHHHHHHHHHHcCCc-ce--eeecCC
Q 025441 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMD-ASGVALVLIGPGSVEQARTFSEQTKFK-GE--VYADPN 162 (252)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~-~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fp--llsDp~ 162 (252)
..++++.+|++|+..||+.|+...+.+.+....++ ..++.++.|..+. ...+.+++++. +| ++.+++
T Consensus 11 ~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 11 LVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA---NNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred HHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc---hHHHHHhCCCCCCCEEEEEcCC
Confidence 33445577888889999999999999999888875 5668888888775 33455565654 34 455555
No 102
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.48 E-value=0.00049 Score=53.91 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=39.9
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC-C-CEEEEEecCCHHHHHHHHHHcCCc
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS-G-VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~-G-v~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
++.+|+.|++.||++|+...+.++++..+++.. + +.+..|.++.. ....+++++++.
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~-~~~~~~~~~~i~ 77 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADE-ENVALCRDFGVT 77 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccch-hhHHHHHhCCCC
Confidence 457888889999999999999999998888653 2 55666665432 233444554543
No 103
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.47 E-value=0.00016 Score=53.90 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=34.0
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
++.++++|++.||+.|+...+.|.++..++ ...+.++.|..+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 367777888999999999999998888776 4467777776553
No 104
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.42 E-value=0.00028 Score=52.35 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=39.6
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
++.++++|+..||+.|+...+.|+++..++. .++.++.|..+... .+.+++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~---~~~~~~~v 66 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENP---DIAAKYGI 66 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCH---HHHHHcCC
Confidence 4577778889999999999999998887764 35888888877543 23444454
No 105
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.38 E-value=0.0004 Score=49.82 Aligned_cols=43 Identities=21% Similarity=0.146 Sum_probs=35.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
+.+.++++|++.||+.|++..+.+++...+ ..++.++.|..+.
T Consensus 9 ~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 9 SAKPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred cCCcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 336678888999999999999999887765 5678898888876
No 106
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.38 E-value=0.00077 Score=50.18 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=41.8
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.+.+|+.|.+.||+.|+...+.|.++..++.+ ++.++-|..+.. ..+++++++.
T Consensus 17 ~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~---~~l~~~~~v~ 70 (103)
T PF00085_consen 17 DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN---KELCKKYGVK 70 (103)
T ss_dssp SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS---HHHHHHTTCS
T ss_pred CCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc---chhhhccCCC
Confidence 45566666778999999999999999998877 899999998854 3445555544
No 107
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=97.29 E-value=0.00085 Score=59.97 Aligned_cols=75 Identities=17% Similarity=0.322 Sum_probs=62.1
Q ss_pred CCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCH-hhHHHHHHHHHhHHHHHhC-CCE--EEEEecCC----HHHHHHH
Q 025441 76 DTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCV-LCRKRADYLAAKKDVMDAS-GVA--LVLIGPGS----VEQARTF 147 (252)
Q Consensus 76 pdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp-~C~~el~~L~~~~~~~~~~-Gv~--vVaVs~d~----~~~~~~f 147 (252)
-+|+|.|.+|+.++-.++ .++.+|+.|-.+.|| .|-+|+..|....+++++. |+. -|+|++|+ ++.+++|
T Consensus 120 GpF~L~d~~Gk~~te~df--~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY 197 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDF--LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEY 197 (280)
T ss_pred CceEEEecCCCeeccccc--ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHH
Confidence 589999999999999999 456778888889999 6999999999999988865 333 57888765 5788888
Q ss_pred HHHcC
Q 025441 148 SEQTK 152 (252)
Q Consensus 148 ~~~~~ 152 (252)
.+++.
T Consensus 198 ~~eF~ 202 (280)
T KOG2792|consen 198 VSEFH 202 (280)
T ss_pred HHhcC
Confidence 88754
No 108
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.26 E-value=0.0014 Score=48.01 Aligned_cols=66 Identities=18% Similarity=0.193 Sum_probs=42.7
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC--CHHHHHHHHH-HcCCc-ceeeecCCh
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSE-QTKFK-GEVYADPNH 163 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d--~~~~~~~f~~-~~~l~-fpllsDp~~ 163 (252)
++.+++.|++.||++|+..++.|.+..+++.. ++.++.|... ..+....|.. -..+| +.++.|.+.
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch
Confidence 33444445699999999999999999888766 7788888885 3334444432 22333 333445444
No 109
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.21 E-value=0.00075 Score=55.50 Aligned_cols=55 Identities=16% Similarity=0.175 Sum_probs=41.1
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+.++||+-|++.||++|+...+-|.++.+++.+. +.++-|..|... ++.+++++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~---dla~~y~I~ 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVP---DFNTMYELY 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCH---HHHHHcCcc
Confidence 3567888888999999999999999988876433 677888888543 455555554
No 110
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.16 E-value=0.00091 Score=53.35 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=34.5
Q ss_pred CeEEEEEEcC-------CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 97 RKAVVAFARH-------FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 97 ~~vVLvF~R~-------~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
+..|++.|++ .||++|+...+.|.++.+++. .++.++-|..+..
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~ 71 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDR 71 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCc
Confidence 3456666677 999999999999999888764 3588888888753
No 111
>PHA02278 thioredoxin-like protein
Probab=97.15 E-value=0.0015 Score=50.61 Aligned_cols=45 Identities=9% Similarity=0.193 Sum_probs=34.5
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
..++.+|+.|++.||++|+...+.|.++.+++ +..+.++-|..|.
T Consensus 12 ~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~-~~~~~~~~vdvd~ 56 (103)
T PHA02278 12 RQKKDVIVMITQDNCGKCEILKSVIPMFQESG-DIKKPILTLNLDA 56 (103)
T ss_pred hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhh-cCCceEEEEECCc
Confidence 34567888889999999999999998886653 2235677777774
No 112
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.00093 Score=52.19 Aligned_cols=53 Identities=15% Similarity=0.133 Sum_probs=43.1
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
++.+|+.|.++||++|+.-.+-+.++..++.+ +.++-|..|. ...+++++++.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde---~~~~~~~~~V~ 73 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE---LEEVAKEFNVK 73 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc---CHhHHHhcCce
Confidence 46778888999999999999999998887655 8889899887 66666666643
No 113
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.11 E-value=0.0039 Score=54.56 Aligned_cols=47 Identities=19% Similarity=0.416 Sum_probs=36.4
Q ss_pred eCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 89 ~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
.+.++ .++-.+++||++ .|++|+.+.+-|+.+.++ .|..|++||.|.
T Consensus 114 ~l~~l-a~~~gL~~F~~~-~C~~C~~~~pil~~~~~~---yg~~v~~vs~DG 160 (215)
T PF13728_consen 114 ALKQL-AQKYGLFFFYRS-DCPYCQQQAPILQQFADK---YGFSVIPVSLDG 160 (215)
T ss_pred HHHHH-hhCeEEEEEEcC-CCchhHHHHHHHHHHHHH---hCCEEEEEecCC
Confidence 34444 245567777766 899999999999887764 499999999984
No 114
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.99 E-value=0.0023 Score=49.69 Aligned_cols=50 Identities=14% Similarity=0.079 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
+.+|+.|++.||+.|+...+.|+++.+++. ++.++-|..+.. ..++++++
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~----~l~~~~~i 74 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA----FLVNYLDI 74 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh----HHHHhcCC
Confidence 677788899999999999999998887763 567777776643 55566565
No 115
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.98 E-value=0.002 Score=41.83 Aligned_cols=45 Identities=13% Similarity=0.120 Sum_probs=37.0
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
|++|+..||+.|++....+.+. +..+.++.++.+..+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 4677899999999999999988 55677899999999877655444
No 116
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.98 E-value=0.0029 Score=62.96 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=27.0
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHH---HHhHHHHHhCCCEEEEEecC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~Gv~vVaVs~d 139 (252)
++.|++.|++.||+.|+...+.. .+..++++ ++.++-|..+
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt 517 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVT 517 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECC
Confidence 46777788899999999865543 33444442 4666666554
No 117
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.95 E-value=0.0027 Score=49.60 Aligned_cols=53 Identities=15% Similarity=0.261 Sum_probs=37.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
....++++|++.||++|+...+-|.++.++. ..++++.|..+... +..+++++
T Consensus 21 ~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~~---~l~~~~~v 73 (113)
T cd02975 21 NPVDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDEDK---EKAEKYGV 73 (113)
T ss_pred CCeEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcCH---HHHHHcCC
Confidence 3445888889999999999888888877654 34777777776532 34445453
No 118
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.94 E-value=0.0066 Score=44.40 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=42.6
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHh--HHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAK--KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~--~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp 161 (252)
++.|+++|.+.||+.|+..-..+-.. ..++-+.++..+-|..++.+....+.. .++|.-++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDR-QGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHH-CSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCC-ccCCEEEEeCC
Confidence 34455555799999999988777432 223224678888888887765444433 57777777775
No 119
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=96.93 E-value=0.0015 Score=63.25 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=40.1
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
.++.+|+.|++.||++|+...+.|.++.++++..++.++.|..|..
T Consensus 370 ~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 370 RKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 4567888889999999999999999999988877888988988753
No 120
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=96.89 E-value=0.0023 Score=56.45 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=38.0
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
..+++.|++.||++|+...+.+.++.++++. .+.+..|..+.. ...++++++.
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~---~~l~~~~~I~ 105 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA---LNLAKRFAIK 105 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc---HHHHHHcCCC
Confidence 4567778899999999999999998888753 355666655543 3445565653
No 121
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.85 E-value=0.0011 Score=62.59 Aligned_cols=59 Identities=14% Similarity=0.176 Sum_probs=45.6
Q ss_pred ccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCHHHHHHHHHHcCCc
Q 025441 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+.++++.++++|++.||+.|+...+.+.+....+++.+ +.++.|.++... +.++++++.
T Consensus 14 ~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~ 74 (462)
T TIGR01130 14 FIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEK---DLAQKYGVS 74 (462)
T ss_pred HHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcH---HHHHhCCCc
Confidence 34456678899999999999999999999988888776 778888877543 345555654
No 122
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=96.77 E-value=0.0029 Score=45.50 Aligned_cols=41 Identities=12% Similarity=0.137 Sum_probs=32.4
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
.|..|++.||++|+...+.|.++..++.. .+.++-|..+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~ 42 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN 42 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC
Confidence 56778899999999999999998877643 377777776543
No 123
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.76 E-value=0.019 Score=50.81 Aligned_cols=81 Identities=12% Similarity=0.231 Sum_probs=52.7
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC---CEEEEEecCCH-HHHH--H
Q 025441 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG---VALVLIGPGSV-EQAR--T 146 (252)
Q Consensus 73 ~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G---v~vVaVs~d~~-~~~~--~ 146 (252)
...|..++-+ .. ...+. .+.|+||-+--++|.+|..++..|..+..+|++.| +..++|+.... ..+. .
T Consensus 8 ~~~p~W~i~~---~~-pm~~~--~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~~ 81 (238)
T PF04592_consen 8 KPPPPWKIGG---QD-PMLNS--LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYWE 81 (238)
T ss_pred CCCCCceECC---ch-Hhhhc--CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHHH
Confidence 4566777633 22 33333 23555555555699999999999999999999876 56888887544 3332 3
Q ss_pred HHHHcCCcceeee
Q 025441 147 FSEQTKFKGEVYA 159 (252)
Q Consensus 147 f~~~~~l~fplls 159 (252)
+.++..-.||||.
T Consensus 82 l~~r~~~~ipVyq 94 (238)
T PF04592_consen 82 LKRRVSEHIPVYQ 94 (238)
T ss_pred HHHhCCCCCceec
Confidence 3344333489986
No 124
>PLN02309 5'-adenylylsulfate reductase
Probab=96.70 E-value=0.0042 Score=60.23 Aligned_cols=44 Identities=11% Similarity=0.196 Sum_probs=39.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
.++.+|++|.+.||++|+...+.+.++.+++...++.+..|..+
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 45678888899999999999999999999888788999999988
No 125
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.68 E-value=0.0042 Score=49.55 Aligned_cols=56 Identities=7% Similarity=0.136 Sum_probs=38.5
Q ss_pred CCCeEEEEEEcCCCCHh--hH--HHHHHHHHhH-HHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 95 KDRKAVVAFARHFGCVL--CR--KRADYLAAKK-DVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~--C~--~el~~L~~~~-~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
+...+||+||++.||++ |+ ...+.|.+.. +.+++.++.++-|..+... +.++++++
T Consensus 25 ~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~---~La~~~~I 85 (120)
T cd03065 25 KYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDA---KVAKKLGL 85 (120)
T ss_pred hCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCH---HHHHHcCC
Confidence 34568999999999987 99 4444555554 4455678999999888543 33344454
No 126
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.63 E-value=0.0036 Score=48.96 Aligned_cols=45 Identities=11% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
....||+.|++.||+.|+...+.|.++.+++ .++.++-|..+...
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~--~~i~f~~Vd~~~~~ 65 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKH--LETKFIKVNAEKAP 65 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHc--CCCEEEEEEcccCH
Confidence 3456788889999999999999998887765 35788888877643
No 127
>PTZ00102 disulphide isomerase; Provisional
Probab=96.52 E-value=0.0035 Score=59.99 Aligned_cols=69 Identities=13% Similarity=0.171 Sum_probs=44.8
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC-CEEEEEecCCHHHH-HHHHHHcCCcceeeecCChH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG-VALVLIGPGSVEQA-RTFSEQTKFKGEVYADPNHS 164 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G-v~vVaVs~d~~~~~-~~f~~~~~l~fpllsDp~~~ 164 (252)
..++.+|++|++.||+.|+...+.+.++...+++.+ +.+..|..+..+.. ..|. -.++|--++.+.+..
T Consensus 373 ~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~~~~~~~~~ 443 (477)
T PTZ00102 373 KSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTILFVKAGER 443 (477)
T ss_pred cCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeEEEEECCCc
Confidence 345678888899999999999999999887776543 55555666543322 2232 224454455565544
No 128
>PTZ00102 disulphide isomerase; Provisional
Probab=96.42 E-value=0.0046 Score=59.19 Aligned_cols=59 Identities=8% Similarity=0.147 Sum_probs=42.8
Q ss_pred ccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCHHHHHHHHHHcCCc
Q 025441 93 LWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 93 l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
...+++.++++|++.||++|++..+.+.+....+++.+ +.+.-|.++... +.++++++.
T Consensus 45 ~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~---~l~~~~~i~ 105 (477)
T PTZ00102 45 FITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM---ELAQEFGVR 105 (477)
T ss_pred HHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH---HHHHhcCCC
Confidence 34456788888999999999999999999888887654 566666665432 344555543
No 129
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.37 E-value=0.0055 Score=48.33 Aligned_cols=47 Identities=9% Similarity=-0.036 Sum_probs=33.0
Q ss_pred CCCeEEEEEEcCCC--CHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 95 KDRKAVVAFARHFG--CVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vVLvF~R~~~--Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
+.+..+|++|.+.| ||.|+...+.|.++.+++.+. +.++-|..+...
T Consensus 25 ~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~~ 73 (111)
T cd02965 25 AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADEQ 73 (111)
T ss_pred hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCCH
Confidence 33445666667775 999999999999988876433 556666666543
No 130
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.36 E-value=0.01 Score=47.57 Aligned_cols=69 Identities=9% Similarity=0.194 Sum_probs=41.7
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHH-HHH--hHHHHHhCCCEEEEEecCCH-HHHHHHHH-------HcCCcceeeecCChH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADY-LAA--KKDVMDASGVALVLIGPGSV-EQARTFSE-------QTKFKGEVYADPNHS 164 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~-L~~--~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~-------~~~l~fpllsDp~~~ 164 (252)
+++.|+++|-+.||+.|+..-.. +.+ +.+.+ +.+..+|-|..+.. +..+.+.+ ..|+|.-++.|++.+
T Consensus 14 ~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 14 EDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred cCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEEEEECCCCC
Confidence 45567777899999999976553 322 23333 34566666655433 22232322 347888899999865
Q ss_pred H
Q 025441 165 S 165 (252)
Q Consensus 165 l 165 (252)
.
T Consensus 93 ~ 93 (124)
T cd02955 93 P 93 (124)
T ss_pred E
Confidence 4
No 131
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.36 E-value=0.0052 Score=50.84 Aligned_cols=54 Identities=13% Similarity=0.089 Sum_probs=38.7
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
...||+-|++.||.+|+.-.+.|+++..++ +--+++.-|..|+.- ++++++++.
T Consensus 61 ~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~-~g~~k~~kvdtD~~~---ela~~Y~I~ 114 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGPCKMLGPILEELVSEY-AGKFKLYKVDTDEHP---ELAEDYEIS 114 (150)
T ss_pred CCCEEEEEecCcCccHhHhhHHHHHHHHhh-cCeEEEEEEcccccc---chHhhccee
Confidence 345666679999999999999999998877 333777777777542 234455554
No 132
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=96.30 E-value=0.02 Score=39.58 Aligned_cols=53 Identities=19% Similarity=0.192 Sum_probs=38.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCCc-ceeeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFK-GEVYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l~-fpllsD 160 (252)
|.+|.+.|||+|+.....| ++.|+.+..|..++. +..+++.+.++.. .|.+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l-------~~~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYL-------TSKGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHH-------HHCCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEE
Confidence 5678999999999876555 446888888887654 4556677777754 676654
No 133
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.96 E-value=0.013 Score=53.51 Aligned_cols=47 Identities=11% Similarity=0.026 Sum_probs=34.7
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHH
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~ 144 (252)
+..|||.||+.||+.|+.-.+.|.++..+.+. .+.+.-|.+|....+
T Consensus 43 ~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p~v 89 (304)
T COG3118 43 EVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEPMV 89 (304)
T ss_pred CCCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcchhH
Confidence 33466777999999999999999998876532 266666777755433
No 134
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=95.84 E-value=0.015 Score=43.64 Aligned_cols=53 Identities=8% Similarity=0.046 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
..++++|...||+.|....+.|.++..+++.. +.++.|..+. ...+++.+++.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~---~~~~~~~~~i~ 65 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADD---FGRHLEYFGLK 65 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHh---hHHHHHHcCCC
Confidence 34566667999999999999999999988733 5666666554 33455666664
No 135
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=95.80 E-value=0.17 Score=42.40 Aligned_cols=139 Identities=17% Similarity=0.141 Sum_probs=76.7
Q ss_pred cccCCCCCcEEecC-----CCCeEeCCCccC---CCeEEEEEEcCCCCHhhHHHHHHHHHh-HHH-HHhCCCEEEEEec-
Q 025441 70 DTKNLLDTVKVYDV-----NGNAIPISDLWK---DRKAVVAFARHFGCVLCRKRADYLAAK-KDV-MDASGVALVLIGP- 138 (252)
Q Consensus 70 ~~g~~apdf~L~d~-----~G~~v~ls~l~~---~~~vVLvF~R~~~Cp~C~~el~~L~~~-~~~-~~~~Gv~vVaVs~- 138 (252)
+.|+.+|.+++.|. +|..++...+-. .+++-|+++=+ +-+--.+.-..|.+. ... |.....+...|--
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iA-Gr~sake~N~~l~~aik~a~f~~d~yqtttIiN~ 80 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIA-GRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINL 80 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEec-cCCchhHhhHHHHHHHHHcCCCccceeEEEEEec
Confidence 45778888887553 344444443211 46777777532 222233333333332 111 3333455555543
Q ss_pred C-----CHHHHHHHHHHcC--Ccce-eeecCChHHHHHcCCccccccccCchhhHHHHHHHhhhchhhccccccccccCC
Q 025441 139 G-----SVEQARTFSEQTK--FKGE-VYADPNHSSYEALSFVSGVLVTFTPKAGLKIIQSYMEGYRQDWKLSFERDTVSR 210 (252)
Q Consensus 139 d-----~~~~~~~f~~~~~--l~fp-llsDp~~~ly~alGv~~~~~~~~~P~~~~~~~~~~~~g~r~~~k~~~~g~~~~g 210 (252)
| +...++..+++.. +|.. ++.|.+..+-+++++....
T Consensus 81 dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~~----------------------------------- 125 (160)
T PF09695_consen 81 DDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEES----------------------------------- 125 (160)
T ss_pred ccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCCC-----------------------------------
Confidence 2 2245566665554 4544 7888776655554443221
Q ss_pred CccccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhhC
Q 025441 211 GGWQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACCS 252 (252)
Q Consensus 211 ~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~~ 252 (252)
-+++|+|.+ |+|.|.+-+ .-...+++++++.+++
T Consensus 126 -----SaiiVlDK~-G~V~F~k~G--~Ls~~Ev~qVi~Ll~~ 159 (160)
T PF09695_consen 126 -----SAIIVLDKQ-GKVQFVKEG--ALSPAEVQQVIALLKK 159 (160)
T ss_pred -----ceEEEEcCC-ccEEEEECC--CCCHHHHHHHHHHHhc
Confidence 158899998 699999876 4455667777777653
No 136
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.74 E-value=0.034 Score=39.19 Aligned_cols=51 Identities=16% Similarity=0.097 Sum_probs=30.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH-HHc-C-Ccceee
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS-EQT-K-FKGEVY 158 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~-~~~-~-l~fpll 158 (252)
+..|.+.|||+|+.....| ++.|+..-.|..+......++. +.. + ...|.+
T Consensus 2 v~ly~~~~C~~C~~~~~~L-------~~~~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i 55 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTL-------DKLGAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV 55 (77)
T ss_pred EEEEECCCChhHHHHHHHH-------HHcCCceEEEeCcCCHhHHHHHHHHhCCCceeCEE
Confidence 4567899999999866655 4556666666666444443333 332 2 345654
No 137
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.65 E-value=0.036 Score=46.90 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=33.8
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
..||+.|++.||+.|+...+.|.++..++. ++.++-|..+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~ 125 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT 125 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch
Confidence 378888899999999998888888877653 577888877753
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=95.53 E-value=0.035 Score=38.49 Aligned_cols=51 Identities=6% Similarity=0.131 Sum_probs=32.8
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cce
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGE 156 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fp 156 (252)
|..|.+.|||+|++-.+.|+++..+ ..++.+.-|..+... +.++++++ ..|
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~--~~~i~~~~id~~~~~---~l~~~~~i~~vP 54 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL--NPNISAEMIDAAEFP---DLADEYGVMSVP 54 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh--CCceEEEEEEcccCH---hHHHHcCCcccC
Confidence 5667889999999888877776443 345777777655432 23445554 344
No 139
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=95.42 E-value=0.031 Score=52.83 Aligned_cols=46 Identities=13% Similarity=0.139 Sum_probs=38.1
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC--CCEEEEEecCCH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS--GVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~--Gv~vVaVs~d~~ 141 (252)
.++.+|++|++.||+.|+...+.+.++..++... ++.++.|..+..
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 4567888899999999999999999999888763 677777877643
No 140
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.018 Score=56.19 Aligned_cols=65 Identities=11% Similarity=0.127 Sum_probs=48.4
Q ss_pred eCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCHHHHHHHHHHcCCc-ce
Q 025441 89 PISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 89 ~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~~~~~~f~~~~~l~-fp 156 (252)
++.++..+...++|-|.+.||..|...++++++....+.+.| +.+.=|-+.. . ..++.+++++ ||
T Consensus 34 nf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~--~-~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 34 NFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATE--E-SDLASKYEVRGYP 101 (493)
T ss_pred cHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecch--h-hhhHhhhcCCCCC
Confidence 344555566778888889999999999999999999999884 4555554443 2 6677777765 55
No 141
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=95.29 E-value=0.044 Score=39.67 Aligned_cols=38 Identities=11% Similarity=0.205 Sum_probs=26.5
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
+.|++.|||.|+.-.+.+.++.+++ |..+-.+..++.+
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~---~~~~~~~~v~~~~ 40 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEEL---GIDAEFEKVTDMN 40 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHc---CCCeEEEEeCCHH
Confidence 4456799999999999888877654 4444445555443
No 142
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=94.88 E-value=0.1 Score=37.90 Aligned_cols=52 Identities=21% Similarity=0.245 Sum_probs=35.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC-Ccceeee
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYA 159 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~-l~fplls 159 (252)
|..|-..|||+|++--..| ++.|+....|..+..+...++.+.++ -++|++.
T Consensus 10 V~ly~~~~Cp~C~~ak~~L-------~~~gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~ 62 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATL-------KEKGYDFEEIPLGNDARGRSLRAVTGATTVPQVF 62 (79)
T ss_pred EEEEECCCCHhHHHHHHHH-------HHcCCCcEEEECCCChHHHHHHHHHCCCCcCeEE
Confidence 4456789999999776666 45677777777765545556666655 4577543
No 143
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=94.84 E-value=0.21 Score=41.92 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=35.6
Q ss_pred cCCCCCcEEec-CCCCeEeCCCccC--CCeEEEEEEcCCCCHhhHHHHHHHHHhH
Q 025441 72 KNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKK 123 (252)
Q Consensus 72 g~~apdf~L~d-~~G~~v~ls~l~~--~~~vVLvF~R~~~Cp~C~~el~~L~~~~ 123 (252)
|..+|++.+.. .+|+++.|.+.+. ++.-|++|--..-++..+..+..|.+..
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~~~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIAPAQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCCchhHHHHHHHHHHHH
Confidence 55678888776 5899999988764 4677888855555556655555555543
No 144
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=94.68 E-value=0.13 Score=36.92 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=35.1
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HHHHHH-HHHHcCC-cce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQART-FSEQTKF-KGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~-f~~~~~l-~fp-llsD 160 (252)
|+.|-..|||+|++..+.|.+.. +. ..+.++-|..++ .+..++ +.+.++. .+| ++.|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i~ 61 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFIN 61 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 34567999999999888887754 11 125677777653 234443 4455554 466 4444
No 145
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.39 E-value=0.074 Score=39.93 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=32.1
Q ss_pred CCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 91 SDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 91 s~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
.+| ++|+-|.+|-+.||++|..-.+-+.++..+. -++++..|..+
T Consensus 8 ~~l--~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~--~~i~~~~vd~~ 52 (89)
T cd03026 8 RRL--NGPINFETYVSLSCHNCPDVVQALNLMAVLN--PNIEHEMIDGA 52 (89)
T ss_pred Hhc--CCCEEEEEEECCCCCCcHHHHHHHHHHHHHC--CCceEEEEEhH
Confidence 355 6799999999999999998777776655432 24666665544
No 146
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.35 E-value=0.2 Score=36.65 Aligned_cols=58 Identities=9% Similarity=0.144 Sum_probs=37.8
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC---Ccce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK---FKGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~---l~fp-llsD 160 (252)
|..|-..|||+|.+-...|+++..+. .|+...-|..+.. ...+++.+..+ ..+| |+.|
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~ 65 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVD 65 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEEC
Confidence 45567899999999999888877543 5777777766532 22334444444 4567 4555
No 147
>PTZ00062 glutaredoxin; Provisional
Probab=94.28 E-value=0.08 Score=46.05 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=31.1
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
..+|+||++.|||.|+...+-|.++.+++ ..+..+-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~--~~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDF--PSLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHC--CCcEEEEEccc
Confidence 56788899999999998888888887765 34666666655
No 148
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.26 E-value=0.14 Score=44.34 Aligned_cols=53 Identities=9% Similarity=0.025 Sum_probs=33.2
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
++|++|+.|++.||++|..-.+.++++..+ .-.+.+.-|..+.. .+..+++++
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~--~~~i~~~~vD~~~~---~~~~~~~~V 184 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALA--NDKILGEMIEANEN---PDLAEKYGV 184 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHh--cCceEEEEEeCCCC---HHHHHHhCC
Confidence 578888889999999999766555554332 22455555655543 233445555
No 149
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=94.20 E-value=0.03 Score=45.36 Aligned_cols=72 Identities=8% Similarity=0.161 Sum_probs=40.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhH--HHHHhCCCEEEEEecCCHH-HHHHHHHHcCCcceeeecCChHHHHHc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKK--DVMDASGVALVLIGPGSVE-QARTFSEQTKFKGEVYADPNHSSYEAL 169 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~--~~~~~~Gv~vVaVs~d~~~-~~~~f~~~~~l~fpllsDp~~~ly~al 169 (252)
.++.|+++|-+.||++|+.--..+-+.. .++-+.+..+|-+-.+..+ .... ...++|.-++.|++.++-..+
T Consensus 22 ~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~--~g~~vPtivFld~~g~vi~~i 96 (130)
T cd02960 22 SNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSP--DGQYVPRIMFVDPSLTVRADI 96 (130)
T ss_pred CCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCc--cCcccCeEEEECCCCCCcccc
Confidence 3455666688999999998877654332 2222334433333333221 1111 224677778999997654443
No 150
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=94.17 E-value=0.12 Score=41.71 Aligned_cols=66 Identities=11% Similarity=0.245 Sum_probs=51.6
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
|.+|-..+|+.|++...- |++.|+.+-.|.. + +.+.+.++.+..+.++.-+..+....|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~-------L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAW-------LEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHHhCCCCc
Confidence 568889999999986654 4566777666653 2 3378899999988888778889999999998875
No 151
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=94.08 E-value=1.1 Score=40.13 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=46.2
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEE-EEEEcCCCCHhhHHHHHHHHHhHHHHH-hC--CCEEEEEecCCH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAV-VAFARHFGCVLCRKRADYLAAKKDVMD-AS--GVALVLIGPGSV 141 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vV-LvF~R~~~Cp~C~~el~~L~~~~~~~~-~~--Gv~vVaVs~d~~ 141 (252)
.+..-..|++.-.+.+|+.+++.+++.++..| .+|++..+=..+...... ...++. +. .+++|-|+..+.
T Consensus 95 ~~kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p---~~~~~~~~~~~~~q~v~In~~e~ 168 (252)
T PF05176_consen 95 ADKALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSP---FLEDFLQEPYGRVQIVEINLIEN 168 (252)
T ss_pred HHhCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhH---HHHHHhhCCCCceEEEEEecchH
Confidence 35566889999999999999999999877544 555554444444433332 222332 33 689999988654
No 152
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=94.01 E-value=0.11 Score=44.94 Aligned_cols=43 Identities=21% Similarity=0.412 Sum_probs=29.7
Q ss_pred CCCeEEEEEEc--CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 95 KDRKAVVAFAR--HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 95 ~~~~vVLvF~R--~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
+.+..+++|+- +.||++|+...+-|.++.+++. ++++..|..+
T Consensus 18 ~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 18 KNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred CCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 34455555554 4999999999999888877663 3555555554
No 153
>PHA02125 thioredoxin-like protein
Probab=93.95 E-value=0.11 Score=37.28 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=17.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHH
Q 025441 101 VAFARHFGCVLCRKRADYLAA 121 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~ 121 (252)
|+.|.+.||+.|+.-.+.|.+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~ 22 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLAN 22 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHH
Confidence 677899999999988777754
No 154
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.94 E-value=0.29 Score=33.54 Aligned_cols=55 Identities=15% Similarity=0.225 Sum_probs=35.0
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC-CcceeeecCC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGEVYADPN 162 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~-l~fpllsDp~ 162 (252)
+.+|...|||+|++-...| ++.|+....+..+.. +..++|.+.++ ..+|++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l-------~~~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFL-------DERGIPFEEVDVDEDPEALEELKKLNGYRSVPVVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHH-------HHCCCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEECC
Confidence 4566789999999755544 346777777776643 44455655444 4577766643
No 155
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.74 E-value=0.36 Score=32.81 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=36.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC-Ccce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~-l~fp-llsD 160 (252)
|+.|...|||+|..-..-| ++.|+..-.+..++. +..+++.+..+ .++| ++.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQVFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEET
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCEEEEC
Confidence 4567789999999766554 778888888888765 44555555545 4577 4444
No 156
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=93.57 E-value=0.15 Score=43.76 Aligned_cols=40 Identities=23% Similarity=0.149 Sum_probs=32.3
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
..|||.|++.||+.|+...+.|.++..++. .+.++-|..+
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 467788899999999999999998887763 4777776665
No 157
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.52 E-value=0.3 Score=37.13 Aligned_cols=58 Identities=19% Similarity=0.318 Sum_probs=34.0
Q ss_pred CCCeEEEEEEcC----CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HHHHHHHHHHcCC-cce-eeec
Q 025441 95 KDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 95 ~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~f~~~~~l-~fp-llsD 160 (252)
...+ |++|-.+ .|||+|.+--.-| ++.|+....+..+. .+..++..+..+. ++| |+.|
T Consensus 10 ~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL-------~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi~ 74 (97)
T TIGR00365 10 KENP-VVLYMKGTPQFPQCGFSARAVQIL-------KACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYVK 74 (97)
T ss_pred ccCC-EEEEEccCCCCCCCchHHHHHHHH-------HHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 3444 5666665 7999999665554 55677766666643 3333344444453 567 5555
No 158
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=93.47 E-value=0.13 Score=46.05 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=35.7
Q ss_pred CCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
+.++ .++.-|+.||| ..||+|+.+++-|+...+ +.|+.|++||.|.
T Consensus 138 i~~l-a~~~GL~fFy~-s~Cp~C~~~aPil~~fa~---~yg~~v~~VS~DG 183 (248)
T PRK13703 138 IAKL-AEHYGLMFFYR-GQDPIDGQLAQVINDFRD---TYGLSVIPVSVDG 183 (248)
T ss_pred HHHH-HhcceEEEEEC-CCCchhHHHHHHHHHHHH---HhCCeEEEEecCC
Confidence 4444 23466777777 669999999999988775 4699999999984
No 159
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=93.36 E-value=0.074 Score=44.74 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=65.3
Q ss_pred CCccccCCCCCcEEec-CCCCeEeCCCccC--CCeEEEEEEcCCCCHhhHHHHHHHHHhHH-------HHHhC------C
Q 025441 67 VSEDTKNLLDTVKVYD-VNGNAIPISDLWK--DRKAVVAFARHFGCVLCRKRADYLAAKKD-------VMDAS------G 130 (252)
Q Consensus 67 ~~~~~g~~apdf~L~d-~~G~~v~ls~l~~--~~~vVLvF~R~~~Cp~C~~el~~L~~~~~-------~~~~~------G 130 (252)
....+|..+|+..+.. .||+++.|.+.+. ++.-|++|--..-.+-+...+..|.+..+ .|... -
T Consensus 28 ~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~s~ 107 (169)
T PF07976_consen 28 GGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPDSV 107 (169)
T ss_dssp TTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TTSS
T ss_pred cCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCCCe
Confidence 3578999999999866 6999999998763 56889999777777776666666666443 33322 2
Q ss_pred CEEEEEecCCH---------HHHHHHHHHcCCcc-eeeecC------ChHHHHHcCCccc
Q 025441 131 VALVLIGPGSV---------EQARTFSEQTKFKG-EVYADP------NHSSYEALSFVSG 174 (252)
Q Consensus 131 v~vVaVs~d~~---------~~~~~f~~~~~l~f-pllsDp------~~~ly~alGv~~~ 174 (252)
++++.|..... +..+.|.+++++.+ .||+|- ...+|+.|||...
T Consensus 108 ~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~~ 167 (169)
T PF07976_consen 108 FDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDRD 167 (169)
T ss_dssp EEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBTT
T ss_pred eEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCcC
Confidence 78999987642 23344555566654 488885 4789999997653
No 160
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.33 E-value=0.14 Score=39.51 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=41.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHH-HHH--hHHHHHhCCCEEEEEecCCHHHHHHHHHHc---CCcceeeecC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADY-LAA--KKDVMDASGVALVLIGPGSVEQARTFSEQT---KFKGEVYADP 161 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~-L~~--~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~---~l~fpllsDp 161 (252)
+++.|++++.+.||+.|+....+ |.. ..+.+. .....+.+..++++ ..++.+.+ ++|.-++.|+
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~~~i~~ 85 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHIAIIDP 85 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeEEEEeC
Confidence 46789999999999999987664 332 334443 34555566555533 34555555 4666688888
No 161
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=93.32 E-value=0.25 Score=38.60 Aligned_cols=66 Identities=14% Similarity=0.203 Sum_probs=52.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+.+|...+|+.|++-...| ++.|+.+-.|.. + +.+.++++.+..+.++.-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L-------~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWL-------EEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCc
Confidence 5678899999999766654 566777666654 2 3478999999988888888899999999999765
No 162
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=93.19 E-value=0.21 Score=38.86 Aligned_cols=65 Identities=25% Similarity=0.405 Sum_probs=49.7
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
.+|-..+|++|++-..-| ++.|+....|.. + +.+.++++.++.+.+..-+.......|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L-------~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWL-------DEHGVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHH-------HHcCCceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCccc
Confidence 467889999999776655 556666555543 2 3478899999999988777778888999999864
No 163
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=93.06 E-value=0.24 Score=37.82 Aligned_cols=65 Identities=15% Similarity=0.274 Sum_probs=49.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~ 172 (252)
|.+|-..+|+.|++-..-| +++|+..-.|.. .+.+.++++..+.+.+..-+..+....|+.++..
T Consensus 1 i~iY~~~~C~~c~ka~~~L-------~~~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~ 69 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWL-------EEHGIEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLA 69 (105)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHcCCCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCc
Confidence 3578899999999776554 556766555544 2347889999998888887778888999999886
No 164
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.02 E-value=0.33 Score=38.76 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=30.7
Q ss_pred CCeEEEEEEc------CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 96 DRKAVVAFAR------HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 96 ~~~vVLvF~R------~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
++++.|+|+= ..|||.|+.--+-+.+.... ...+..+|-|..++.
T Consensus 19 ~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~-~~~~~~lv~v~VG~r 69 (119)
T PF06110_consen 19 GKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKK-APENARLVYVEVGDR 69 (119)
T ss_dssp TSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---H
T ss_pred CCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHh-CCCCceEEEEEcCCH
Confidence 3567777762 35999999999999887766 344788888887765
No 165
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=92.79 E-value=0.19 Score=45.22 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=33.5
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
++..+++||| ..||+|+.+++-|+...+ +.|+.|++||.|.
T Consensus 150 ~~~gL~fFy~-~~C~~C~~~apil~~fa~---~ygi~v~~VS~DG 190 (256)
T TIGR02739 150 QSYGLFFFYR-GKSPISQKMAPVIQAFAK---EYGISVIPISVDG 190 (256)
T ss_pred hceeEEEEEC-CCCchhHHHHHHHHHHHH---HhCCeEEEEecCC
Confidence 3566777777 669999999999988765 4599999999984
No 166
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=92.78 E-value=0.5 Score=33.44 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=35.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsD 160 (252)
|.+|-..+||+|++-...|. +.|+..-.+..+......+...+.|. ..|++..
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~ 54 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA 54 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccCEEEE
Confidence 35678899999998777664 56887777777654444444444564 6785544
No 167
>smart00594 UAS UAS domain.
Probab=92.61 E-value=0.41 Score=37.65 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=44.1
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHH---hHHHHHhCCCEEEEEecCCHHHHHHHHHHcC---CcceeeecCCh
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAA---KKDVMDASGVALVLIGPGSVEQARTFSEQTK---FKGEVYADPNH 163 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~---~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~---l~fpllsDp~~ 163 (252)
+++.+++++.+.||+.|+....+.=. ..+.+ +.+..++.+...+.+. .++++.++ +|+-++.|+..
T Consensus 26 ~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 26 QRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred hcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEEEEEecCC
Confidence 46788999999999999998887433 23344 4456666666666544 45555554 55557777764
No 168
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=92.57 E-value=0.13 Score=41.51 Aligned_cols=65 Identities=11% Similarity=0.159 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC--CcceeeecCC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK--FKGEVYADPN 162 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~--l~fpllsDp~ 162 (252)
.++.-++.+-.+|||.|+..++.|.++.+. .-++++=.|..|.. +....|....+ +|-=|+.|.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~--~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEA--NPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKD 107 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH---TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHh--CCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCC
Confidence 345556666899999999999999998875 23677777777643 44555655323 4444677765
No 169
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=92.35 E-value=0.36 Score=37.77 Aligned_cols=64 Identities=20% Similarity=0.292 Sum_probs=50.2
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC----CHHHHHHHHHHcCCcceeeecCChHHHHHcCCc
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG----SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d----~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~ 172 (252)
.+|-..+|++|++-..-| ++.|+.+..|... +.+.+.++.+..+..+.-+.+.....|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L-------~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWL-------EANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHH-------HHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchhhCCch
Confidence 467889999999777665 5567777766643 236788899998888887888999999999974
No 170
>PRK12559 transcriptional regulator Spx; Provisional
Probab=92.20 E-value=0.5 Score=38.12 Aligned_cols=66 Identities=12% Similarity=0.237 Sum_probs=51.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+.+|-..+|+.|++...- |++.|+..-.+.. -+.+.++.+.+..+.+..-+.......|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~-------L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAW-------LEENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHH-------HHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHHHHhCCCCc
Confidence 567889999999986654 4566766655543 34479999999988887777788999999999864
No 171
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=92.11 E-value=1 Score=31.61 Aligned_cols=53 Identities=15% Similarity=0.184 Sum_probs=34.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HHHHHHHHHHcCC--ccee-eec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKF--KGEV-YAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~f~~~~~l--~fpl-lsD 160 (252)
|..|-..+||+|.+-...| ++.|+..-.|..+. .+..+++.+..+. .+|. +.|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L-------~~~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i~ 58 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALL-------DKKGVDYEEIDVDGDPALREEMINRSGGRRTVPQIFIG 58 (75)
T ss_pred EEEEeCCCChHHHHHHHHH-------HHCCCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEEC
Confidence 4567889999999766655 44677777776654 4455666665553 5774 444
No 172
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.02 E-value=0.63 Score=34.65 Aligned_cols=60 Identities=23% Similarity=0.319 Sum_probs=33.3
Q ss_pred ccCCCeEEEEEEcC----CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHH-HHHHHHcCC-cce-eeec
Q 025441 93 LWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 93 l~~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~-~~f~~~~~l-~fp-llsD 160 (252)
+.++.| |++|--+ .|||+|.+-...| ++.|+..-.|..+....+ ++..+..+. ++| |+.|
T Consensus 4 ~i~~~~-vvvf~k~~~~~~~Cp~C~~ak~~L-------~~~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi~ 70 (90)
T cd03028 4 LIKENP-VVLFMKGTPEEPRCGFSRKVVQIL-------NQLGVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYVN 70 (90)
T ss_pred hhccCC-EEEEEcCCCCCCCCcHHHHHHHHH-------HHcCCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEEC
Confidence 444455 4555444 6999999766555 445566555554433333 444444453 567 4555
No 173
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=91.96 E-value=0.9 Score=45.84 Aligned_cols=56 Identities=13% Similarity=0.022 Sum_probs=39.0
Q ss_pred CccccCCCCCcEEec-CCCCeEeCCCcc--CCCeEEEEEEcCCCCHhhHHHHHHHHHhH
Q 025441 68 SEDTKNLLDTVKVYD-VNGNAIPISDLW--KDRKAVVAFARHFGCVLCRKRADYLAAKK 123 (252)
Q Consensus 68 ~~~~g~~apdf~L~d-~~G~~v~ls~l~--~~~~vVLvF~R~~~Cp~C~~el~~L~~~~ 123 (252)
...+|..+|++.+.. .+++++.|.+.+ .++..+++|--..-.+.....+..|.+..
T Consensus 462 ~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l 520 (634)
T PRK08294 462 GFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFL 520 (634)
T ss_pred CCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHH
Confidence 467899999999887 478888877655 35677777755455556666666555543
No 174
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=91.58 E-value=1 Score=30.47 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=33.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH-HHHHHHHHcCC-cceeee
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYA 159 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~-~~~~f~~~~~l-~fplls 159 (252)
|+.|-..|||+|++-...|. +.|+.+.-+..+... ..+.+.+..+. .+|++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~-------~~~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLE-------SLGIEFEEIDILEDGELREELKELSGWPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCcEEEEECCCCHHHHHHHHHHhCCCCcCEEE
Confidence 34567899999997766654 456777777666543 34555555564 577544
No 175
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=91.53 E-value=1.6 Score=34.49 Aligned_cols=51 Identities=12% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 90 ISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 90 ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
|+++..++.+||+|-...--+.=+.++..|.+....|.+..+.++.|..+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~ 53 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDG 53 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCc
Confidence 444544567899998888999999999999998899999999988886553
No 176
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=91.40 E-value=0.68 Score=37.36 Aligned_cols=66 Identities=14% Similarity=0.091 Sum_probs=51.6
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+..|-..+|+.|++-.. .|++.|+..-.|.. -+.+.++.+.+..+.++.-+.......|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~-------~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKT-------WLNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHH-------HHHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHHhCCcch
Confidence 45778899999997544 45677877766653 24479999999998888777779999999999764
No 177
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=91.32 E-value=0.96 Score=31.78 Aligned_cols=53 Identities=23% Similarity=0.378 Sum_probs=32.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC-Ccce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~-l~fp-llsD 160 (252)
|+.|-..|||+|.+-...|. +.|+....+..+.....+.+.+..+ .++| |+.|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi~ 57 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQVFID 57 (72)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCeEEEC
Confidence 34556799999998766554 5677766666654444444544434 3566 3444
No 178
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=91.20 E-value=0.43 Score=36.41 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=30.4
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH----HHHHHHHHHcCC-cce-eeec
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV----EQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~----~~~~~f~~~~~l-~fp-llsD 160 (252)
...+ |++| -.+|||+|++--.-| ++.|+..-.|..+.. +..+.+.+..+. ++| |+.|
T Consensus 6 ~~~~-Vvvy-sk~~Cp~C~~ak~~L-------~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vfi~ 68 (99)
T TIGR02189 6 SEKA-VVIF-SRSSCCMCHVVKRLL-------LTLGVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVFVG 68 (99)
T ss_pred ccCC-EEEE-ECCCCHHHHHHHHHH-------HHcCCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEEEC
Confidence 3344 3444 459999999655544 455665445554432 122334444443 577 5555
No 179
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=91.04 E-value=0.7 Score=33.03 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=32.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HHHHHHHHHHcC-Ccce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK-FKGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~f~~~~~-l~fp-llsD 160 (252)
|..|...|||+|.+--.-|. +.|+..--+..+. ++..+++.+..+ ..+| |+.|
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~-------~~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i~ 56 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLS-------SKGVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFIG 56 (79)
T ss_pred CEEEecCCChhHHHHHHHHH-------HcCCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 35678899999997766654 4566555555443 345556666555 3466 4444
No 180
>PRK10824 glutaredoxin-4; Provisional
Probab=90.97 E-value=0.99 Score=35.73 Aligned_cols=57 Identities=9% Similarity=0.209 Sum_probs=33.7
Q ss_pred eEEEEEEcC----CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC-CHHHHHHHHHHcCC-cce-eeecC
Q 025441 98 KAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTKF-KGE-VYADP 161 (252)
Q Consensus 98 ~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d-~~~~~~~f~~~~~l-~fp-llsDp 161 (252)
.-|++|-.+ .|||||++-..-|.+ .|+..-.|..+ +.+....+.+..++ ++| |+.|-
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~-------~~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI~G 78 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSA-------CGERFAYVDILQNPDIRAELPKYANWPTFPQLWVDG 78 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHH-------cCCCceEEEecCCHHHHHHHHHHhCCCCCCeEEECC
Confidence 346667776 599999977666544 34443333333 33333445555565 477 77763
No 181
>PHA03050 glutaredoxin; Provisional
Probab=90.90 E-value=1 Score=35.05 Aligned_cols=58 Identities=21% Similarity=0.226 Sum_probs=28.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--CCHHHHHHHHHHcCC-cce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--GSVEQARTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d~~~~~~~f~~~~~l-~fp-llsD 160 (252)
|+.|-..|||+|++-..-|.+..- +...+.++=|.. +..+...++.+..|- +.| |+.|
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i--~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI~ 76 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSF--KRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFFG 76 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCC--CcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEEC
Confidence 334578999999876655543211 001223444432 123344455555554 566 4444
No 182
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=90.76 E-value=0.49 Score=37.57 Aligned_cols=63 Identities=8% Similarity=-0.033 Sum_probs=35.7
Q ss_pred CCCccCCCeEEEEEEcC--CCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCH--HHHHHHHHHcCCc---ce
Q 025441 90 ISDLWKDRKAVVAFARH--FGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSV--EQARTFSEQTKFK---GE 156 (252)
Q Consensus 90 ls~l~~~~~vVLvF~R~--~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~--~~~~~f~~~~~l~---fp 156 (252)
+.+..++.+.+||-|-+ .||. + ++...++.+++.++. +.|--|.+++. ..-++.++++++. ||
T Consensus 11 F~~~v~~~~~vlV~F~A~~Pwc~---k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gyP 82 (116)
T cd03007 11 FYKVIPKFKYSLVKFDTAYPYGE---K-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESYP 82 (116)
T ss_pred HHHHHhcCCcEEEEEeCCCCCCC---C-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCCC
Confidence 34445566777887888 5665 3 244444444443322 44555556432 1236688888884 77
No 183
>PRK10638 glutaredoxin 3; Provisional
Probab=90.70 E-value=1.1 Score=32.54 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=34.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCC-cceee-ec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVY-AD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l-~fpll-sD 160 (252)
|.+|-..|||+|++-...|. +.|+....+..+.. +..+++.+..+. .+|.+ .|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~-------~~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~~ 59 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLN-------SKGVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFID 59 (83)
T ss_pred EEEEECCCChhHHHHHHHHH-------HcCCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEEC
Confidence 45667899999997766654 45666666666543 344567666665 36754 44
No 184
>PRK10329 glutaredoxin-like protein; Provisional
Probab=90.58 E-value=1.5 Score=32.20 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=35.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeecCC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp~ 162 (252)
|..|-..|||+|..--..| ++.|+..-.|..+......+.....|. ..|++...+
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i~~ 58 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLPVVIAGD 58 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcCEEEECC
Confidence 4566789999999755554 568888888877754433333333453 578665443
No 185
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=90.17 E-value=1.9 Score=30.42 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=32.6
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC-Cccee
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-FKGEV 157 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~-l~fpl 157 (252)
|..|-..|||+|++-..-| ++.|+....+..+.. +...++.+..+ ..+|.
T Consensus 3 v~ly~~~~C~~C~ka~~~L-------~~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~ 54 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFL-------REKGLPYVEINIDIFPERKAELEERTGSSVVPQ 54 (73)
T ss_pred EEEEecCCChhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHHhCCCCcCE
Confidence 3456679999999766655 457788777777653 34455555544 34663
No 186
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.15 E-value=0.95 Score=36.31 Aligned_cols=50 Identities=22% Similarity=0.202 Sum_probs=36.3
Q ss_pred eEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHH-HhCCCEEEEEec
Q 025441 87 AIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVM-DASGVALVLIGP 138 (252)
Q Consensus 87 ~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~-~~~Gv~vVaVs~ 138 (252)
.+.+++- +.++.|+.|--+.||+|+.....+.++.+++ +.-.+.++.+..
T Consensus 4 ~~~~G~~--~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNP--DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp SEEES-T--TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeecCC--CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 3456653 6788999999999999999999999888776 333466666644
No 187
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.51 Score=42.46 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=40.2
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+.+.|+|-|-+.||.+|++-++-++.+..++ .|+..+=|..| ..+..+..+|..
T Consensus 20 g~k~v~Vdfta~wCGPCk~IaP~Fs~lankY--p~aVFlkVdVd---~c~~taa~~gV~ 73 (288)
T KOG0908|consen 20 GGKLVVVDFTASWCGPCKRIAPIFSDLANKY--PGAVFLKVDVD---ECRGTAATNGVN 73 (288)
T ss_pred CceEEEEEEEecccchHHhhhhHHHHhhhhC--cccEEEEEeHH---HhhchhhhcCcc
Confidence 5689999999999999999999999887776 45555555433 555556666654
No 188
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=90.13 E-value=0.36 Score=47.26 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=32.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
.++-||+-|.+.||++|.+-.+.++++.+.+++.. .||.--+|
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~-~vviAKmD 425 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDE-NVVIAKMD 425 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCC-CcEEEEec
Confidence 45677778889999999999999999999887742 33333344
No 189
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=90.10 E-value=0.74 Score=33.96 Aligned_cols=58 Identities=10% Similarity=0.107 Sum_probs=35.1
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-HHHHHHHHHHcC---Ccce-eeec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTK---FKGE-VYAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~f~~~~~---l~fp-llsD 160 (252)
|+.|-..|||+|.+-...|.++..+. .++...-|..+. ....+++.+..+ .+.| |+.|
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~ 64 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVD 64 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEEC
Confidence 45667889999998888776654321 245555555542 223344666666 4677 4555
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.49 E-value=1.2 Score=32.56 Aligned_cols=53 Identities=23% Similarity=0.374 Sum_probs=33.3
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEE--EecCCHHHHHHHHHHcC--Cccee-eec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVL--IGPGSVEQARTFSEQTK--FKGEV-YAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVa--Vs~d~~~~~~~f~~~~~--l~fpl-lsD 160 (252)
|..|--.+||+|.+--..| .+.|+...- |..++.+..++++++.. -++|. +.|
T Consensus 3 v~iyt~~~CPyC~~ak~~L-------~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i~ 60 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLL-------DRKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFIG 60 (80)
T ss_pred EEEEECCCCchHHHHHHHH-------HHcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEEC
Confidence 3445667899999765555 466665444 44455457777777763 56884 444
No 191
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=89.35 E-value=1.8 Score=30.74 Aligned_cols=55 Identities=15% Similarity=0.131 Sum_probs=31.6
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHH-HHHHHcCC-ccee-eec
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQAR-TFSEQTKF-KGEV-YAD 160 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~-~f~~~~~l-~fpl-lsD 160 (252)
|++|-..|||+|..--..|.+..- ....+=|..++. ...+ .+.+..+. .+|. +.|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~~~ 60 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVFIG 60 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEEEC
Confidence 355668999999987777665432 235555555433 3333 34444454 4664 444
No 192
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=89.24 E-value=0.53 Score=37.19 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEE
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaV 136 (252)
+.++.|+.|.-++||+|+..-+.+.++..+.. .+.++.+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~--~~~~~~~ 42 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP--DVRVVFK 42 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC--CceEEEE
Confidence 45778888889999999999888877654432 2444443
No 193
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=88.98 E-value=0.75 Score=43.29 Aligned_cols=57 Identities=12% Similarity=0.089 Sum_probs=38.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ce
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GE 156 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fp 156 (252)
.....++.|.+.||.+|.+.++.+.++...++. -+.+..|.++ .....++++++. ||
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~---~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCD---EHKDLCEKYGIQGFP 103 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcC-ceEEEEeCch---hhHHHHHhcCCccCc
Confidence 344566666799999999999999988777766 2344444444 445556666654 45
No 194
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=88.58 E-value=3.9 Score=40.15 Aligned_cols=36 Identities=14% Similarity=0.033 Sum_probs=28.2
Q ss_pred CCccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEE
Q 025441 67 VSEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAF 103 (252)
Q Consensus 67 ~~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF 103 (252)
+...+|..+|+..+. .+|+.+++.++++.+.+||.|
T Consensus 425 ~~~~pG~r~p~~~~~-~~~~~~~l~dl~g~~f~ll~~ 460 (547)
T PRK08132 425 GGPVPGAPAPDAPVR-ADGEPGWLLDLLGGGFTLLLF 460 (547)
T ss_pred CCCCCCCCCCCCccc-CCCCceEHHHhcCCCEEEEEe
Confidence 345689999999987 467788999999766777766
No 195
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=88.39 E-value=1.5 Score=33.90 Aligned_cols=63 Identities=14% Similarity=0.189 Sum_probs=47.1
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~ 172 (252)
+.+|-..+|+.|++...-| ++.|+.+-.+.. -+.+.++.+.++.| ..-+.......|+.+++.
T Consensus 1 i~iy~~~~C~~crka~~~L-------~~~~i~~~~~di~~~p~s~~eL~~~l~~~g--~~~li~~~~~~yk~l~l~ 67 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWL-------EARGVAYTFHDYRKDGLDAATLERWLAKVG--WETLLNKRGTTWRKLDDA 67 (105)
T ss_pred CEEEeCCCCHHHHHHHHHH-------HHcCCCeEEEecccCCCCHHHHHHHHHHhC--hHHHHccCchHHHhCChh
Confidence 3578899999999866654 566766666553 24579999999877 455667888999999886
No 196
>PRK06184 hypothetical protein; Provisional
Probab=88.32 E-value=4 Score=39.59 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=28.3
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccC-CCeEEEEE
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAF 103 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~-~~~vVLvF 103 (252)
....|..+|++.+.+.+|+.+++-+++. .+.+||.|
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~~~~~ll~~ 421 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRGPHWTLLAF 421 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCCCcEEEEEe
Confidence 4568999999999877888888888886 45666664
No 197
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=88.26 E-value=0.19 Score=49.68 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=46.0
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCC--CEEEEEecCCHHHHHHHHHHcCCc-cee
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASG--VALVLIGPGSVEQARTFSEQTKFK-GEV 157 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~G--v~vVaVs~d~~~~~~~f~~~~~l~-fpl 157 (252)
.++.-+|-|.+.||+.|+..++.++++...++.-. +.|-+|.+... .....+++++++ ||.
T Consensus 56 ~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~-~N~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 56 SRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADE-ENVKLCREFSVSGYPT 119 (606)
T ss_pred cchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccch-hhhhhHhhcCCCCCce
Confidence 34466777789999999999999999888776543 56778888765 445677787876 564
No 198
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=86.27 E-value=1.8 Score=31.48 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=39.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp 161 (252)
|++|-..+|+.|..--..|.+... +.++.+-.|..++.+. +.++++...|++.-.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~---~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~ 56 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAA---EFPFELEEVDIDEDPE---LFEKYGYRIPVLHID 56 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCT---TSTCEEEEEETTTTHH---HHHHSCTSTSEEEET
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh---hcCceEEEEECCCCHH---HHHHhcCCCCEEEEc
Confidence 678889999999987777766432 4568888888885433 777889888876543
No 199
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=84.97 E-value=1.5 Score=41.34 Aligned_cols=57 Identities=14% Similarity=0.058 Sum_probs=39.7
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh-CCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDA-SGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~-~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
...++.|-+.||++|+..++.+.++...++. .++.+..+..+....+.....-.++|
T Consensus 163 ~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 163 ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 3445555799999999999999999888874 67888888877333343333333343
No 200
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.85 E-value=1.6 Score=34.98 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
+|||.|....+-+.+.... ...++.+|-|..++.
T Consensus 43 SWCPdCV~AEPvi~~alk~-ap~~~~~v~v~VG~r 76 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKH-APEDVHFVHVYVGNR 76 (128)
T ss_pred cCCchHHHhhHHHHHHHHh-CCCceEEEEEEecCC
Confidence 3999999998888776552 245677777777764
No 201
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=83.96 E-value=3.8 Score=32.18 Aligned_cols=66 Identities=5% Similarity=-0.015 Sum_probs=38.5
Q ss_pred CCeEEEEEEcCC----CCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHH--HHHHHHHcCCcceeeecCCh
Q 025441 96 DRKAVVAFARHF----GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQ--ARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 96 ~~~vVLvF~R~~----~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~--~~~f~~~~~l~fpllsDp~~ 163 (252)
+.|.++|.+... ||.+|+.-+.+ .++.+-+ +.+.-+++....+.+. +.....-..+|+-++.++..
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~l-n~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYI-NTRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHH-HcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 457888888888 89999776642 1122223 3466666666666653 22233333566666665443
No 202
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=82.30 E-value=3 Score=35.36 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
.+++.+-..+++++|+.+++||..+...++.|.++++++|
T Consensus 48 tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f 87 (175)
T COG2179 48 TPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF 87 (175)
T ss_pred CHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce
Confidence 3567777888999999999999999999999999999888
No 203
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=80.54 E-value=6.6 Score=34.08 Aligned_cols=57 Identities=25% Similarity=0.454 Sum_probs=45.3
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEe-cCCHHHHHHHHHHcCCcceee
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGEVY 158 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs-~d~~~~~~~f~~~~~l~fpll 158 (252)
.+..+.+|.. .-|+.|-..+..+.. ....+.|..|+ .++.+.++.|+.+.+++-..+
T Consensus 108 ~~~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V 165 (200)
T TIGR03759 108 GGGRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKV 165 (200)
T ss_pred CCCeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHe
Confidence 4557888888 899999999998854 35578888888 456679999999999986433
No 204
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=78.89 E-value=18 Score=35.43 Aligned_cols=88 Identities=16% Similarity=0.158 Sum_probs=52.2
Q ss_pred CccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHH
Q 025441 68 SEDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTF 147 (252)
Q Consensus 68 ~~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f 147 (252)
.+.+|+.+|+..+.+.+|....+.++.+.+.+||.| ++.. ...+. ......++..|+.+|.+.+.....
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~~~~ll~~----~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~---- 478 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGPGFAVLGW----GCDP-LAGLS--DEQRARWRALGARFVQVVPAVQAH---- 478 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCCceEEEEe----cCCc-hhcCC--HHHHHHHHHcCCeEEEEecccccc----
Confidence 346899999999987766655677777777777765 2211 01111 112233667889998887664211
Q ss_pred HHHcCCcceeeecCChHHHHHcC
Q 025441 148 SEQTKFKGEVYADPNHSSYEALS 170 (252)
Q Consensus 148 ~~~~~l~fpllsDp~~~ly~alG 170 (252)
.-..+.+.|.+..+.+.|+
T Consensus 479 ----~~~~~~~~d~~g~~~~~~~ 497 (538)
T PRK06183 479 ----TAQDDHDSDVDGALRAWLA 497 (538)
T ss_pred ----cCCCceeecCCchHHHHHH
Confidence 0133466777666555443
No 205
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=78.63 E-value=3.3 Score=32.22 Aligned_cols=34 Identities=26% Similarity=0.517 Sum_probs=22.0
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
..||+|-+ +|||+|.. +.+| |...|+...+|-.|
T Consensus 14 ~~VVifSK-s~C~~c~~-~k~l------l~~~~v~~~vvELD 47 (104)
T KOG1752|consen 14 NPVVIFSK-SSCPYCHR-AKEL------LSDLGVNPKVVELD 47 (104)
T ss_pred CCEEEEEC-CcCchHHH-HHHH------HHhCCCCCEEEEcc
Confidence 34666666 99999998 5554 33466665555544
No 206
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=78.59 E-value=4.6 Score=31.96 Aligned_cols=66 Identities=17% Similarity=0.279 Sum_probs=52.2
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCc
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~ 172 (252)
.+.+|...-|.-|+.-.. .|++.|+..-.|.. =+.+.+.++.++.+.++.-+.......|++||..
T Consensus 2 ~itiy~~p~C~t~rka~~-------~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~~~ 71 (117)
T COG1393 2 MITIYGNPNCSTCRKALA-------WLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELNLD 71 (117)
T ss_pred eEEEEeCCCChHHHHHHH-------HHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcCCc
Confidence 467888999999996554 46778877644432 3458999999999999998889999999999944
No 207
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=78.36 E-value=1.8 Score=43.13 Aligned_cols=66 Identities=12% Similarity=0.113 Sum_probs=42.9
Q ss_pred EEEEEEcCCCCHhhHHHHH-HHHHhHHHHHhCCCEEEEEecC-CHHHHHHHHHHcC---CcceeeecCChH
Q 025441 99 AVVAFARHFGCVLCRKRAD-YLAAKKDVMDASGVALVLIGPG-SVEQARTFSEQTK---FKGEVYADPNHS 164 (252)
Q Consensus 99 vVLvF~R~~~Cp~C~~el~-~L~~~~~~~~~~Gv~vVaVs~d-~~~~~~~f~~~~~---l~fpllsDp~~~ 164 (252)
.|.+.|-+.||--|++--+ .+++...+++..|+.++=+... +...+.++.++++ .|.-++.|++.+
T Consensus 476 pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff~~~g~ 546 (569)
T COG4232 476 PVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPTYLFFGPQGS 546 (569)
T ss_pred cEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEECCCCC
Confidence 7777888999999997444 3344555666677776665543 2245666666666 445577776543
No 208
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=77.71 E-value=6.7 Score=30.44 Aligned_cols=66 Identities=11% Similarity=0.232 Sum_probs=51.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++.+.-| ++.|+.+..+.. + +.+.++.+.+..+.+..-+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 1 ITIYHNPRCSKSRNALALL-------EEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAPYKELGLAD 70 (112)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCchHHHcCCCc
Confidence 3577889999999876554 566777666653 2 4479999999999888877788999999998864
No 209
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=77.52 E-value=5.3 Score=37.11 Aligned_cols=33 Identities=6% Similarity=-0.034 Sum_probs=28.3
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC
Q 025441 97 RKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~ 129 (252)
.-+|++.|-+.||+|.|.-.+-+.+..+.+++.
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 457888889999999999999999988777754
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=77.02 E-value=3 Score=36.27 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=35.9
Q ss_pred CCccCCCeEEEEEEcC----CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHH-HHHHHHcCC-cce-eeec
Q 025441 91 SDLWKDRKAVVAFARH----FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQA-RTFSEQTKF-KGE-VYAD 160 (252)
Q Consensus 91 s~l~~~~~vVLvF~R~----~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~-~~f~~~~~l-~fp-llsD 160 (252)
.++....| |++|-.+ .+||+|++-..-|. +.|+....+..+..+.+ +...+..+. ++| |+.+
T Consensus 107 ~~li~~~~-Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI~ 175 (204)
T PTZ00062 107 ERLIRNHK-ILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVYSNWPTYPQLYVN 175 (204)
T ss_pred HHHHhcCC-EEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEEC
Confidence 34444444 6667675 59999997666554 45666555555433333 344444454 467 6665
No 211
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=76.98 E-value=4.1 Score=34.44 Aligned_cols=26 Identities=31% Similarity=0.402 Sum_probs=20.8
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHH
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAA 121 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~ 121 (252)
+++..|+.|--..||+|++..+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 34566666778999999999988876
No 212
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=76.34 E-value=8.1 Score=30.08 Aligned_cols=66 Identities=11% Similarity=0.180 Sum_probs=49.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcc-eeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKG-EVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~f-pllsDp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++...-| ++.|+.+..+.. + +.+.++.+.+..+++. .=+.......|+.+++..
T Consensus 1 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALL-------EDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEALYKELGLSD 71 (114)
T ss_pred CEEEECCCCHHHHHHHHHH-------HHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCcHHHHcCCCc
Confidence 3578889999999876655 556777666653 2 3479999999988653 336688899999998864
No 213
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=75.10 E-value=4.4 Score=32.94 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=28.9
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEE
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vV 134 (252)
+.++.|+.|.-+.||+|...-+.+.+...++ ..++.+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~ 51 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFE 51 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEE
Confidence 4577788888899999999999998877665 3345543
No 214
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=75.08 E-value=5 Score=36.48 Aligned_cols=86 Identities=14% Similarity=0.035 Sum_probs=54.2
Q ss_pred ccccCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH
Q 025441 69 EDTKNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 69 ~~~g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~ 148 (252)
.+..+..|-|++.|.+|+.+-.+.- .++++.-+|+-.- -.-...+.+|++..+++ +.+++|+.|+-|..-.+ .
T Consensus 76 ~ekL~~VPVFtItn~~G~pvl~s~~-~~~~~~gvf~s~q--edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl---~ 148 (270)
T TIGR00995 76 AKILAGTSVFTVSNAQNEFVLASDN-DGEKSIGLLCFRQ--EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKL---K 148 (270)
T ss_pred HHHhcCCceEEEEcCCCCeEEEECC-CCCceEEEEECCH--HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHH---h
Confidence 4567799999999999998877754 2344444442110 11223344444444554 46799999998876544 2
Q ss_pred HHcCCcceeeecCC
Q 025441 149 EQTKFKGEVYADPN 162 (252)
Q Consensus 149 ~~~~l~fpllsDp~ 162 (252)
+.++.|.++.|+.
T Consensus 149 -~e~l~F~fiP~~~ 161 (270)
T TIGR00995 149 -VEGIGFRFLPDPA 161 (270)
T ss_pred -hcCccEEEeCCHH
Confidence 3458888887754
No 215
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=74.03 E-value=3.9 Score=28.44 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=32.2
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeecC
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp 161 (252)
.+|...|||+|++-...|.+. +...+.+-|...+ ...+|.+.+.. ..|++.|.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~--~~~~~~~~np~~~vP~L~~~ 55 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-----GITVELREVELKN--KPAEMLAASPKGTVPVLVLG 55 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCC--CCHHHHHHCCCCCCCEEEEC
Confidence 356788999999876666442 2234555555432 22456665554 47888765
No 216
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=73.96 E-value=6.9 Score=34.45 Aligned_cols=37 Identities=19% Similarity=0.412 Sum_probs=27.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEE
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaV 136 (252)
+++..|+.|--.-||||++..+++.++ .+.|+.|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~----~~~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDY----NALGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHH----hcCCeEEEEE
Confidence 456667777899999999988887654 3467777665
No 217
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=72.43 E-value=20 Score=25.34 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=32.7
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCC--EEEEEecCCHHHHHHHHHHcCC-cceeeecC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGV--ALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv--~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp 161 (252)
+..|-..+||+|++-...| +++|+ +++-|..+. ....+|.+.++. ..|++.|.
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L-------~~~gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP~l~~~ 57 (77)
T cd03041 2 LELYEFEGSPFCRLVREVL-------TELELDVILYPCPKGS-PKRDKFLEKGGKVQVPYLVDP 57 (77)
T ss_pred ceEecCCCCchHHHHHHHH-------HHcCCcEEEEECCCCh-HHHHHHHHhCCCCcccEEEeC
Confidence 3567788999999766665 34454 444444332 234567666554 47888774
No 218
>PRK10026 arsenate reductase; Provisional
Probab=69.50 E-value=15 Score=30.08 Aligned_cols=67 Identities=13% Similarity=0.210 Sum_probs=51.6
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEe--cC--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PG--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs--~d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
-+.+|....|.-|++.+.-| ++.|+.+..+. .+ +.+.++.|.++.+++..-+.......|+.+++..
T Consensus 3 ~i~iY~~p~Cst~RKA~~wL-------~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr~L~~~~ 73 (141)
T PRK10026 3 NITIYHNPACGTSRNTLEMI-------RNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYEELGLAE 73 (141)
T ss_pred EEEEEeCCCCHHHHHHHHHH-------HHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHHHcCCCc
Confidence 36688999999999877655 55676666665 33 3479999999999876666678889999999764
No 219
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=69.37 E-value=6.5 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.076 Sum_probs=25.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEe
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG 137 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs 137 (252)
|.+|....||+|...-+.|.+... ....++++.-+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~-~~~~~~~~~~~~ 36 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLY-ADDGGVRVVYRP 36 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHh-hcCCcEEEEEec
Confidence 356778999999999999988762 234456655443
No 220
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=67.33 E-value=13 Score=31.34 Aligned_cols=70 Identities=9% Similarity=0.096 Sum_probs=35.3
Q ss_pred CeEEEEEEcCCCCHhhHHHHH-HHHHh-HHHHHhCCCEEEEEecCCHHHHHH-HH-------HHcCCcceeeecCChHHH
Q 025441 97 RKAVVAFARHFGCVLCRKRAD-YLAAK-KDVMDASGVALVLIGPGSVEQART-FS-------EQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~-~L~~~-~~~~~~~Gv~vVaVs~d~~~~~~~-f~-------~~~~l~fpllsDp~~~ly 166 (252)
.+.|++.+-..||..|..... .+++- ..++-+....-|-|..+....+.. |. ..-|+|..|+.+|+.+..
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~vfltPdg~p~ 116 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLTVFLTPDGKPF 116 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEEEEE-TTS-EE
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCceEEECCCCCee
Confidence 456777778999999997665 33321 122223344555566665444433 32 345899999999987643
No 221
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=66.33 E-value=18 Score=25.72 Aligned_cols=31 Identities=19% Similarity=0.404 Sum_probs=19.9
Q ss_pred CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
+.+||.|..-.+.+++...+ .|+.+=.+...
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~---~~i~~ei~~~~ 37 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEE---LGIEVEIIDIE 37 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHH---TTEEEEEEETT
T ss_pred CCCCCCcHHHHHHHHHHHHh---cCCeEEEEEcc
Confidence 67799999777666665544 35555444443
No 222
>PRK10853 putative reductase; Provisional
Probab=65.14 E-value=17 Score=28.67 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=49.0
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec----CCHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP----GSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~----d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++.+.-| ++.|+.+..+.. =+.+.++.|.++.|+. -+.......|+.++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L-------~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~--~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWL-------EAQGIDYRFHDYRVDGLDSELLQGFIDELGWE--ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHH-------HHcCCCcEEeehccCCcCHHHHHHHHHHcCHH--HHHhcCCchHHhCCHhH
Confidence 5688899999999866654 566877777763 2457999999987754 47788899999998753
No 223
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=61.72 E-value=9.9 Score=24.85 Aligned_cols=55 Identities=22% Similarity=0.104 Sum_probs=30.1
Q ss_pred EEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeecCCh
Q 025441 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp~~ 163 (252)
+|-..+||+|++-...|... +...+++-+..+..... ++.+..+. ..|++.+.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P~l~~~~~ 58 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNPLGKVPVLEDGGL 58 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCCCCCCCEEEECCE
Confidence 45567899999665555433 22345556655433222 45444443 4677776543
No 224
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=58.97 E-value=12 Score=28.37 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=33.7
Q ss_pred CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ceeeecCChHHHH
Q 025441 107 FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fpllsDp~~~ly~ 167 (252)
-.||||++-.-.|.+. ....+++-|...+.. +.|.+.+.+. .|++.|.+..+++
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP~g~vPvL~~~~~~i~e 74 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAPGTQPPFLLYNGEVKTD 74 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCCCCCCCEEEECCEEecC
Confidence 5799999988877543 223445666555432 4466665553 6888886655544
No 225
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=58.94 E-value=37 Score=26.20 Aligned_cols=40 Identities=10% Similarity=0.067 Sum_probs=32.6
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCC--------HHHHHHHHHHcCCcce
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGS--------VEQARTFSEQTKFKGE 156 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~--------~~~~~~f~~~~~l~fp 156 (252)
+...+....+++.|+.++.+|... .+.++++.+..++.+.
T Consensus 28 ~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~~~ 75 (132)
T TIGR01662 28 PEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVPID 75 (132)
T ss_pred CCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCCEE
Confidence 455567778889999999999988 6778888898888754
No 226
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=58.90 E-value=40 Score=25.72 Aligned_cols=58 Identities=17% Similarity=0.357 Sum_probs=44.0
Q ss_pred CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC----HHHHHHHHHHcCCcceeeecCChHHHHHcC
Q 025441 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS----VEQARTFSEQTKFKGEVYADPNHSSYEALS 170 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~----~~~~~~f~~~~~l~fpllsDp~~~ly~alG 170 (252)
..-|.-|++.+.- |++.|+.+-.|..-. .+.+.++.+..+.++.-+.++....|+.++
T Consensus 3 ~~~C~t~rka~~~-------L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKW-------LEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHH-------HHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHH-------HHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh
Confidence 4679999876654 577898888888643 378999999999998888899999999999
No 227
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=57.96 E-value=11 Score=25.93 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=28.2
Q ss_pred EEcCCCCHhhHHHHHHHHHhHHHHHhCCCE--EEEEecCCHHHHHHHHHHcCC-cceeeecCC
Q 025441 103 FARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKF-KGEVYADPN 162 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~--vVaVs~d~~~~~~~f~~~~~l-~fpllsDp~ 162 (252)
.|-..+||+|++-...| +..|+. ++-|..+. ...+|.+.+.. ..|++.|.+
T Consensus 3 ly~~~~~~~~~~v~~~l-------~~~gi~~~~~~v~~~~--~~~~~~~~~p~~~vP~l~~~~ 56 (73)
T cd03059 3 LYSGPDDVYSHRVRIVL-------AEKGVSVEIIDVDPDN--PPEDLAELNPYGTVPTLVDRD 56 (73)
T ss_pred EEECCCChhHHHHHHHH-------HHcCCccEEEEcCCCC--CCHHHHhhCCCCCCCEEEECC
Confidence 45678899999876665 344544 33344332 22345444443 356666643
No 228
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=57.24 E-value=42 Score=24.84 Aligned_cols=51 Identities=20% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 123 KDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
...++...+.+|.|..|-.+ .+..+++.+++|+ ++.....++-++.|+...
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv-~~~~t~~eLG~A~G~~v~ 71 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI-VYIDTMKELGVMCGIDVG 71 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE-EEeCCHHHHHHHHCCccC
Confidence 34456667889999988653 4455678889999 688888899999998755
No 229
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.88 E-value=24 Score=30.50 Aligned_cols=43 Identities=14% Similarity=0.179 Sum_probs=33.5
Q ss_pred ecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHH
Q 025441 81 YDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDV 125 (252)
Q Consensus 81 ~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~ 125 (252)
...++..+..++. ..++.++.|.-.-||+|.+.++++.+.+-.
T Consensus 70 ~~~~~~~~~~G~~--~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~ 112 (244)
T COG1651 70 LTPDGKDVVLGNP--YAPVTVVEFFDYTCPYCKEAFPELKKKYID 112 (244)
T ss_pred ecCCCCcccccCC--CCCceEEEEecCcCccHHHHHHHHHHHhhh
Confidence 4556777777776 348888899999999999999998885443
No 230
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=56.74 E-value=15 Score=32.79 Aligned_cols=38 Identities=21% Similarity=0.220 Sum_probs=26.0
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEE
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaV 136 (252)
+.+.+|+.|--.-||||++...++.+..+ .-+++|..+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~---~g~V~v~~i 153 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD---SGKVQLRHI 153 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh---cCceEEEEE
Confidence 45666666789999999999988766443 222555444
No 231
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=56.55 E-value=22 Score=34.05 Aligned_cols=41 Identities=15% Similarity=0.300 Sum_probs=25.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHH
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFS 148 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~ 148 (252)
|+.|-.+|||+|.+--.- |++.|+..-.|..+......++.
T Consensus 4 V~vys~~~Cp~C~~aK~~-------L~~~gi~~~~idi~~~~~~~~~~ 44 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSW-------FGANDIPFTQISLDDDVKRAEFY 44 (410)
T ss_pred EEEEeCCCCHHHHHHHHH-------HHHCCCCeEEEECCCChhHHHHH
Confidence 445678999999965544 45667776666665443333433
No 232
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=53.97 E-value=43 Score=23.25 Aligned_cols=51 Identities=16% Similarity=0.270 Sum_probs=28.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC-CcceeeecC
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYADP 161 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~-l~fpllsDp 161 (252)
.+|-...||+|++-...| ..+|+..-.+..+... ..++ +..+ -..|++.|.
T Consensus 3 ~Ly~~~~~p~c~kv~~~L-------~~~gi~y~~~~~~~~~-~~~~-~~~~~~~vP~l~~~ 54 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFL-------DYHGIPYEVVEVNPVS-RKEI-KWSSYKKVPILRVE 54 (77)
T ss_pred EEEEcCCCHHHHHHHHHH-------HHCCCceEEEECCchh-HHHH-HHhCCCccCEEEEC
Confidence 455678899999877665 4556554444443321 1122 2233 347777754
No 233
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=53.62 E-value=18 Score=32.45 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=29.2
Q ss_pred CccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhC
Q 025441 92 DLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDAS 129 (252)
Q Consensus 92 ~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~ 129 (252)
++..++++.|+|.-+.|||+|-.+-=.|-....+|...
T Consensus 53 d~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~ 90 (249)
T PF06053_consen 53 DLAPNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF 90 (249)
T ss_pred ccCCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe
Confidence 45567899999999999999998877776655555443
No 234
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=53.54 E-value=33 Score=27.94 Aligned_cols=66 Identities=14% Similarity=0.164 Sum_probs=44.1
Q ss_pred CCeEEEEEEcCCC-------CHhhHH-HHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCC
Q 025441 96 DRKAVVAFARHFG-------CVLCRK-RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 96 ~~~vVLvF~R~~~-------Cp~C~~-el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~ 162 (252)
+.+++.+|+.-.. .+.-.. .+..|.++..++++.|..++.+..+..+.+.++++++++.- |+.+.+
T Consensus 24 ~~~v~~vfv~d~~~~~~~~~~~~r~~Fl~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~-V~~~~~ 97 (165)
T PF00875_consen 24 GDPVLPVFVFDPEEFHPYRIGPRRRRFLLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATA-VYFNEE 97 (165)
T ss_dssp TSEEEEEEEE-HHGGTTCSSCHHHHHHHHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESE-EEEE--
T ss_pred CCCeEEEEEecccccccccCcchHHHHHHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCe-eEeccc
Confidence 3566666654322 233333 34578888999999999999998888889999999988443 666654
No 235
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=50.97 E-value=47 Score=27.43 Aligned_cols=51 Identities=12% Similarity=0.210 Sum_probs=40.0
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceee
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVY 158 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpll 158 (252)
..=+++|...-|.-|.+.++.| ++.|.+|=.+..++-+.++ +++++|.++-
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~d~~alK---~~~gIp~e~~ 75 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETDDFLALK---RRLGIPYEMQ 75 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecCcHHHHH---HhcCCChhhc
Confidence 4457788999999999998876 5789999999999776554 4578887543
No 236
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=48.51 E-value=27 Score=31.66 Aligned_cols=85 Identities=16% Similarity=0.230 Sum_probs=44.2
Q ss_pred cccCCCCCcEEecCCCCeEeCCCccC-CCeEEEEEEcCCCCHhhHHHHHHHHHhH----HHHHhCCCEEEEEecCCHHHH
Q 025441 70 DTKNLLDTVKVYDVNGNAIPISDLWK-DRKAVVAFARHFGCVLCRKRADYLAAKK----DVMDASGVALVLIGPGSVEQA 144 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G~~v~ls~l~~-~~~vVLvF~R~~~Cp~C~~el~~L~~~~----~~~~~~Gv~vVaVs~d~~~~~ 144 (252)
+..+.+|-|++.|.+|.++-...=-+ ++.+.++| +|++++.++-+.. +++ +.+++|+.|+-+....+
T Consensus 70 ~kL~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F-------~s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 70 EKLAGVPVFTITNSQGEPVLVSGPDQGGKSVGLFF-------FSQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HHHTTSEEEEEE-TT--B-----TTS--SEEEEEE-------S-HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred HHhcCceEEEEECCCCCEEEeccCCCCCceEEEEE-------ecHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 45778999999999999886665421 23445555 4777777664422 222 57899999999866433
Q ss_pred -HHH-HHHcCCcceeeecCC
Q 025441 145 -RTF-SEQTKFKGEVYADPN 162 (252)
Q Consensus 145 -~~f-~~~~~l~fpllsDp~ 162 (252)
++. .+..++.|.++.|+.
T Consensus 142 ~~~~~~k~~~~~F~~vP~~~ 161 (274)
T PF04278_consen 142 AQENKKKPEGLQFRFVPDPK 161 (274)
T ss_dssp HHHTTT-TT-EEEEEE--HH
T ss_pred HHHhhcCCcCceEEEcCCHH
Confidence 211 134456777777643
No 237
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=47.89 E-value=58 Score=26.60 Aligned_cols=40 Identities=13% Similarity=0.128 Sum_probs=28.9
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
|.||.-+-||+|-.-...|.++..++.+..+...-+....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 6778899999999999999998887733334444444333
No 238
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=47.24 E-value=39 Score=24.94 Aligned_cols=38 Identities=13% Similarity=0.111 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
.+.+.+...++++.|..++.||......++.+.++.++
T Consensus 26 ~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 26 YPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred CcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 45566667778889999999999998999999999887
No 239
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=46.78 E-value=53 Score=27.00 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ceeeec
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYAD 160 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fpllsD 160 (252)
++..+...++++.|+++..++-|+...+....++.++. .-++++
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~~v~a~ 174 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDSIVFAR 174 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSEEEEES
T ss_pred hhhhhhhhhhhccCcceeeeecccccccccccccccccccccccc
Confidence 34555667788899999999999999999999999983 224443
No 240
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=45.92 E-value=78 Score=24.02 Aligned_cols=51 Identities=6% Similarity=0.014 Sum_probs=38.3
Q ss_pred HHHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 123 KDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
...+++..+.+|.|+.|-++ .+..+++++++|+-.|.....++-++.|...
T Consensus 25 ~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~ 79 (99)
T PRK01018 25 IKAIKLGKAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPF 79 (99)
T ss_pred HHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCC
Confidence 34456667899999988653 5566788888888777677889999998653
No 241
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=45.65 E-value=94 Score=23.17 Aligned_cols=52 Identities=8% Similarity=0.079 Sum_probs=39.8
Q ss_pred hHHHHHhCCCEEEEEecCCH----HHHHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 122 KKDVMDASGVALVLIGPGSV----EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 122 ~~~~~~~~Gv~vVaVs~d~~----~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
....+++-.+.+|.|..|-. ..+...+++.++|+ +|.|...++-++.|+..+
T Consensus 21 t~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~-v~V~s~~~LGkAcgi~V~ 76 (84)
T PRK13600 21 TLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV-SFFKSKHALGKHVGINVN 76 (84)
T ss_pred HHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCcC
Confidence 34455555677888887743 46678889988888 788999999999998754
No 242
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=44.83 E-value=36 Score=29.66 Aligned_cols=55 Identities=13% Similarity=-0.001 Sum_probs=43.6
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcce--eeecCChHHHH
Q 025441 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (252)
Q Consensus 113 ~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fp--llsDp~~~ly~ 167 (252)
..-.+.+.+...++.++|+.+|.++.-+...++.+.++++++.| ++++-...+|.
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~~~I~~NGa~I~~ 76 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPDIWVTSVGSEIYY 76 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCCEEEEcCCceEEe
Confidence 34567888888889999998888888888899999888888777 77776666654
No 243
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=44.30 E-value=65 Score=25.08 Aligned_cols=64 Identities=16% Similarity=0.270 Sum_probs=45.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
+.+|-...|.-|++...- |++.|+..-.+.. + +.+.++.+.++.++ .-+.......|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~-------L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~--~~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKAL-------LEAAGHEVEVRDLLTEPWTAETLRPFFGDLPV--AEWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHH-------HHHcCCCcEEeehhcCCCCHHHHHHHHHHcCH--HHHHhcccHHHHhcCCCc
Confidence 457788999999976654 4566766555543 3 34789999997653 555567788999887664
No 244
>PF14968 CCDC84: Coiled coil protein 84
Probab=43.73 E-value=5.1 Score=37.50 Aligned_cols=48 Identities=17% Similarity=0.251 Sum_probs=25.9
Q ss_pred cCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 105 RHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 105 R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
+.+||+||-.++.+... .|.-.|+-==.-|++....+++|.-+++...
T Consensus 57 ~~fWC~fC~~ev~~~~s---~~~~~~ai~HLaS~eH~k~vk~F~w~~g~~~ 104 (336)
T PF14968_consen 57 NRFWCVFCDCEVREHDS---SFACGGAIEHLASPEHRKNVKKFWWKNGADM 104 (336)
T ss_pred ceeEeeCccchhhhccc---hhhhccHHhhcCCHHHHHHHHHHHHHcCCCc
Confidence 46899999999987743 1111111000112333346667776666554
No 245
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=43.25 E-value=63 Score=22.62 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=29.8
Q ss_pred EEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC--HHHHHHHHHHcCCcceeee
Q 025441 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS--VEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~--~~~~~~f~~~~~l~fplls 159 (252)
..|+.-||.=--.+. +..+++ +.|-.+.++..++ .+.+..|+++.|..+-...
T Consensus 3 D~rG~~CP~Pvl~~k---kal~~l-~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~ 57 (69)
T cd03420 3 DACGLQCPGPILKLK---KEIDKL-QDGEQLEVKASDPGFARDAQAWCKSTGNTLISLE 57 (69)
T ss_pred ccCCCcCCHHHHHHH---HHHHcC-CCCCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence 457788886222111 112222 2354455555443 3789999999988875443
No 246
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=42.71 E-value=1.5e+02 Score=29.02 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=40.8
Q ss_pred HHHHhHHHHHhCCC-EEEEEecCC------H-HHHHHHHHHcCCcceeeecCChHHHHHcCCcccc
Q 025441 118 YLAAKKDVMDASGV-ALVLIGPGS------V-EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 118 ~L~~~~~~~~~~Gv-~vVaVs~d~------~-~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~ 175 (252)
.|++..+.+++.++ ++.+|.+.. . +.++...+++|++..|++..+..-|..+|+...+
T Consensus 63 ~L~~F~~~~~~~~v~~i~~vATsAvReA~N~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l 128 (496)
T PRK11031 63 CLRLFAERLQDIPPSQIRVVATATLRLAVNADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTT 128 (496)
T ss_pred HHHHHHHHHHhCCCCeEEEEEeHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhcc
Confidence 44444555566776 477776632 2 4555666788999999999999988888877653
No 247
>TIGR02174 CXXU_selWTH selT/selW/selH selenoprotein domain. This model represents a domain found in both bacteria and animals, including animal proteins SelT, SelW, and SelH, all of which are selenoproteins. In a CXXC motif near the N-terminus of the domain, selenocysteine may replace the second Cys. Proteins with this domain may include an insert of about 70 amino acids. This model is broader than the current SelW model pfam05169 in Pfam.
Probab=42.45 E-value=52 Score=23.44 Aligned_cols=35 Identities=9% Similarity=0.164 Sum_probs=28.0
Q ss_pred ccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 214 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 214 q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+.+|.|-|--+ |+++|.-.. -+..|+.++|+++++
T Consensus 38 ~~~G~Fev~~~-g~~v~sk~~--~~~fp~~~~~~~~ir 72 (72)
T TIGR02174 38 PTTGAFEVTVN-GQLVWSKLR--GGGFPEPEELKQLIR 72 (72)
T ss_pred CCCcEEEEEEC-CEEEEEecc--CCCCCCHHHHHHhhC
Confidence 46789988766 599988765 357899999999875
No 248
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=42.41 E-value=27 Score=23.97 Aligned_cols=57 Identities=12% Similarity=-0.039 Sum_probs=32.3
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCC-cceeeecCCh
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l-~fpllsDp~~ 163 (252)
.+|...+|++|++-.-.|.+. ....+++-|..... ....+|.+.+.. ..|++.|.+.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~~ 60 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVDNGF 60 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCCEEEECCE
Confidence 356778999998655554332 22345555554322 233556666554 4788877543
No 249
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=42.16 E-value=62 Score=22.03 Aligned_cols=48 Identities=8% Similarity=0.043 Sum_probs=25.3
Q ss_pred EcCCCCHhhHHHHHHHHHhHHHHHhCCCE--EEEEecCCHHHHHHHHHHcCC-cceeeecC
Q 025441 104 ARHFGCVLCRKRADYLAAKKDVMDASGVA--LVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~--vVaVs~d~~~~~~~f~~~~~l-~fpllsDp 161 (252)
|-..+||+|++-.-.| ..+|+. .+.+..+... .+.+..+. ..|++.|.
T Consensus 4 y~~~~~p~~~rvr~~L-------~~~gl~~~~~~~~~~~~~---~~~~~~~~~~vP~L~~~ 54 (71)
T cd03037 4 YIYEHCPFCVKARMIA-------GLKNIPVEQIILQNDDEA---TPIRMIGAKQVPILEKD 54 (71)
T ss_pred EecCCCcHhHHHHHHH-------HHcCCCeEEEECCCCchH---HHHHhcCCCccCEEEeC
Confidence 4568899999655554 444554 4444433222 22233322 36777664
No 250
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=41.36 E-value=31 Score=25.11 Aligned_cols=54 Identities=17% Similarity=0.067 Sum_probs=30.2
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeecC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADP 161 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp 161 (252)
+.+|-...||+|++-...|.+. ....+++-|.... .-+.|.+.+.. ..|++.+.
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~--~~~~~~~~np~~~vPvL~~~ 73 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKD--KPDWFLEKNPQGKVPALEID 73 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCC--CcHHHHhhCCCCCcCEEEEC
Confidence 4556678899999766655432 2223455554432 12345555444 47877754
No 251
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=41.27 E-value=45 Score=26.08 Aligned_cols=35 Identities=23% Similarity=0.373 Sum_probs=28.2
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.+...++++.|+.++++|..+.+.+....+++++.
T Consensus 83 ~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~ 117 (176)
T PF13419_consen 83 RELLERLKAKGIPLVIVSNGSRERIERVLERLGLD 117 (176)
T ss_dssp HHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred hhhhhhcccccceeEEeecCCcccccccccccccc
Confidence 34455677789999999999888888888888876
No 252
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.98 E-value=36 Score=30.48 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=36.5
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ceeeecCChHHH
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fpllsDp~~~ly 166 (252)
..+.+++++|+.||.+|.-+......+.+..+++ -|+++.....+|
T Consensus 30 pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p~iaEnG~aI~ 76 (274)
T COG3769 30 PVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQGLPLIAENGAAIY 76 (274)
T ss_pred hHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCCCceeecCCceEE
Confidence 3467788999999999999998888999999988 566666554443
No 253
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=40.08 E-value=1.3e+02 Score=22.05 Aligned_cols=53 Identities=9% Similarity=0.099 Sum_probs=37.7
Q ss_pred hHHHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCcccc
Q 025441 122 KKDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 122 ~~~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~ 175 (252)
....+++..+.+|.|..|-.+ .+..+++++++|+- +.+...++-++.|.....
T Consensus 19 v~kai~~gkaklViiA~D~~~~~~~~i~~~c~~~~Vp~~-~~~s~~eLG~a~G~~~~~ 75 (82)
T PRK13602 19 TVKALKRGSVKEVVVAEDADPRLTEKVEALANEKGVPVS-KVDSMKKLGKACGIEVGA 75 (82)
T ss_pred HHHHHHcCCeeEEEEECCCCHHHHHHHHHHHHHcCCCEE-EECCHHHHHHHHCCCcCE
Confidence 344566667889999888654 44566788888884 444668888888877653
No 254
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=39.98 E-value=63 Score=22.57 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=30.1
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEe--cCCHHHHHHHHHHcCCcceeeec
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIG--PGSVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs--~d~~~~~~~f~~~~~l~fpllsD 160 (252)
+..|+.-||.=--++. +..+++ +.|-.+.++. +.+.+.+..|+++.|+.+-...+
T Consensus 2 lD~~G~~CP~P~i~~k---~~l~~l-~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 2 LDTRGLRCPEPVMMLH---KKVRKM-KPGDTLLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred ccccCCcCCHHHHHHH---HHHHcC-CCCCEEEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 3457788887322211 112222 2343333333 34457899999999888754444
No 255
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=39.78 E-value=69 Score=21.50 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=31.0
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCC-cceeeec
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l-~fpllsD 160 (252)
.+|...+||+|++-.-.|.+. +...+++-|..... ....+|.+.+.. ..|++.+
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~-----~l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEK-----GIDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHc-----CCCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 356778999999877666443 22344555554321 123446555544 4687764
No 256
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=39.75 E-value=45 Score=31.22 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=34.6
Q ss_pred CCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCC
Q 025441 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~ 162 (252)
||.+.+.++..+.+.. .++++++|.--+.+.+++++++++++ .|.|.+
T Consensus 10 G~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~--~y~~~e 57 (343)
T TIGR01761 10 GTRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP--LYCEVE 57 (343)
T ss_pred eHHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC--ccCCHH
Confidence 4456666666664431 16899999999999999999998875 555544
No 257
>PRK10854 exopolyphosphatase; Provisional
Probab=38.72 E-value=2e+02 Score=28.27 Aligned_cols=59 Identities=5% Similarity=0.097 Sum_probs=41.9
Q ss_pred HHHHHhHHHHHhCCC-EEEEEecCC------H-HHHHHHHHHcCCcceeeecCChHHHHHcCCcccc
Q 025441 117 DYLAAKKDVMDASGV-ALVLIGPGS------V-EQARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv-~vVaVs~d~------~-~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~ 175 (252)
..|++....+++.++ ++.+|.+.. . +.++...+++|++..|++..+..-|..+|+...+
T Consensus 67 ~~L~~F~~~~~~~~v~~v~~vATsAlReA~N~~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l 133 (513)
T PRK10854 67 NCLSLFAERLQGFSPANVCIVGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQ 133 (513)
T ss_pred HHHHHHHHHHHhCCCCeEEEEehHHHHcCcCHHHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhccc
Confidence 344555555667776 477777632 2 4556666778999999999999988888877654
No 258
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=38.59 E-value=44 Score=23.28 Aligned_cols=53 Identities=19% Similarity=0.085 Sum_probs=30.3
Q ss_pred EcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcC-CcceeeecCCh
Q 025441 104 ARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTK-FKGEVYADPNH 163 (252)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~-l~fpllsDp~~ 163 (252)
|...+||+|++-.-.|+. +....+++-|..... -..|.+..+ -..|++.|.+.
T Consensus 2 y~~~~Sp~~~kv~~~l~~-----~~i~~~~~~v~~~~~--~~~~~~~~p~~~vPvL~~~g~ 55 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEE-----KGIPYELVPVDPEEK--RPEFLKLNPKGKVPVLVDDGE 55 (75)
T ss_dssp EEETTSHHHHHHHHHHHH-----HTEEEEEEEEBTTST--SHHHHHHSTTSBSSEEEETTE
T ss_pred CCcCCChHHHHHHHHHHH-----cCCeEEEeccCcccc--hhHHHhhcccccceEEEECCE
Confidence 556899999976665532 222345555555442 344555544 34787776543
No 259
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=38.33 E-value=42 Score=27.23 Aligned_cols=35 Identities=11% Similarity=0.215 Sum_probs=29.9
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
+...++++.|+.++.||.+....++.+++..+++.
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 45555678899999999998889999999999885
No 260
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=37.42 E-value=91 Score=25.40 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=35.2
Q ss_pred CCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH
Q 025441 95 KDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE 142 (252)
Q Consensus 95 ~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~ 142 (252)
+..++||+-|-+.|-|.|.+.=.-|.+..+++++. +.+.+|..+...
T Consensus 18 e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vp 64 (133)
T PF02966_consen 18 EEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVP 64 (133)
T ss_dssp -SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTH
T ss_pred cCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccch
Confidence 35689999999999999997777777777776554 677788887554
No 261
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=37.39 E-value=1.2e+02 Score=23.56 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=37.9
Q ss_pred HHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 124 DVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 124 ~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
..++...+.+|.|..|-++ .++.+++.+++|+-.|.+...++-++.|...
T Consensus 35 kalk~gkaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~ 88 (108)
T PTZ00106 35 KALRNGKAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHF 88 (108)
T ss_pred HHHHcCCeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCcc
Confidence 3455566889999988653 4556778888888777788899999999754
No 262
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=37.13 E-value=1.4e+02 Score=20.94 Aligned_cols=47 Identities=9% Similarity=0.082 Sum_probs=33.4
Q ss_pred HHHHHhHHHHHhCCCEEEEE-ecCCHHHHHHHHHHcCCcceeeecCCh
Q 025441 117 DYLAAKKDVMDASGVALVLI-GPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaV-s~d~~~~~~~f~~~~~l~fpllsDp~~ 163 (252)
....++...+++.|+.+..- ...+....-+++++.|+++-++.+.+.
T Consensus 15 ~~a~~~~~~Lr~~g~~v~~d~~~~~~~~~~~~a~~~g~~~~iiig~~e 62 (91)
T cd00860 15 DYAKEVAKKLSDAGIRVEVDLRNEKLGKKIREAQLQKIPYILVVGDKE 62 (91)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHcCCCEEEEECcch
Confidence 34445677788889888763 444556677788899999988876543
No 263
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=37.06 E-value=1.6e+02 Score=26.57 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=36.4
Q ss_pred HHHHhHHHHHhCCC-EEEEEecC------CH-HHHHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 118 YLAAKKDVMDASGV-ALVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 118 ~L~~~~~~~~~~Gv-~vVaVs~d------~~-~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
.|++....+++.++ ++.+|... +. +.+....++.|+.+.+++..+...|..+|+...
T Consensus 57 ~l~~f~~~~~~~~v~~i~~vaTsa~R~A~N~~~~~~~i~~~tgi~i~visg~eEa~l~~~gv~~~ 121 (300)
T TIGR03706 57 ALKRFAELLRGFPVDEVRAVATAALRDAKNGPEFLREAEAILGLPIEVISGEEEARLIYLGVAHT 121 (300)
T ss_pred HHHHHHHHHHhCCCCeEEEEEcHHHHcCCCHHHHHHHHHHHHCCCeEEeChHHHHHHHHHHHHhC
Confidence 34444444556676 46666653 22 344555577899999998888777777765544
No 264
>TIGR00591 phr2 photolyase PhrII. All proteins in this family for which functions are known are DNA-photolyases used for the direct repair of UV irradiation induced DNA damage. Some repair 6-4 photoproducts while others repair cyclobutane pyrimidine dimers. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=36.96 E-value=1.8e+02 Score=27.85 Aligned_cols=63 Identities=13% Similarity=-0.073 Sum_probs=42.9
Q ss_pred CeEEEEEEcCC-C---CHhhHH-HHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeec
Q 025441 97 RKAVVAFARHF-G---CVLCRK-RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 97 ~~vVLvF~R~~-~---Cp~C~~-el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsD 160 (252)
.+++.+|+.-. . .+.... -+..|.++..++++.|..+++...+..+.+.++++++++.- |+.|
T Consensus 53 ~~vl~vyi~dp~~~~~~~~r~~Fl~esL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~i~~-V~~~ 120 (454)
T TIGR00591 53 LPLHVCFCLVDFFLAATRRHYFFMLGGLDEVANECERLIIPFHLLDGPPKELLPYFVDLHAAAA-VVTD 120 (454)
T ss_pred CCEEEEEEeCCCcccccHHHHHHHHHHHHHHHHHHHHcCCceEEeecChHHHHHHHHHHcCCCE-EEEe
Confidence 35666665421 1 222333 34578888899999999999988777788899999877653 4444
No 265
>TIGR03556 photolyase_8HDF deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420.
Probab=36.84 E-value=1.9e+02 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.197 Sum_probs=37.1
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecC
Q 025441 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 113 ~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp 161 (252)
+-.+..|.++..++++.|+.+++...+..+.+.+++++++++- |+.+.
T Consensus 51 ~Fl~esL~~L~~~L~~~G~~L~v~~G~p~~vl~~l~~~~~~~~-V~~~~ 98 (471)
T TIGR03556 51 AYLIGCLQELQQRYQQAGSQLLILQGDPVQLIPQLAQQLGAKA-VYWNL 98 (471)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEECCHHHHHHHHHHHcCCCE-EEEec
Confidence 4456788888999999999999887777788899998877653 44433
No 266
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=36.80 E-value=1.1e+02 Score=24.52 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=27.9
Q ss_pred HhHHHHHhCCCEEEEEecCCH---H------------HHHHHHHHcCCcce-eee
Q 025441 121 AKKDVMDASGVALVLIGPGSV---E------------QARTFSEQTKFKGE-VYA 159 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~---~------------~~~~f~~~~~l~fp-lls 159 (252)
+...++++.|..++.++.-+. . ...+|.+++++||+ |+.
T Consensus 31 e~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~ 85 (126)
T TIGR01689 31 EKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYV 85 (126)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEe
Confidence 345555678999998886543 2 56789999999996 443
No 267
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=36.20 E-value=1.4e+02 Score=24.48 Aligned_cols=46 Identities=11% Similarity=0.014 Sum_probs=26.4
Q ss_pred CCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcC-----Ccce-eeec
Q 025441 108 GCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTK-----FKGE-VYAD 160 (252)
Q Consensus 108 ~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~-----l~fp-llsD 160 (252)
+||+|++--.- |++.|+.+--+..+.. +..++..+..+ .+.| |+.|
T Consensus 15 t~~~C~~ak~i-------L~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~ 67 (147)
T cd03031 15 TFEDCNNVRAI-------LESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVD 67 (147)
T ss_pred cChhHHHHHHH-------HHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEEC
Confidence 89999855444 4556777666665433 33344444433 3566 5665
No 268
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=36.08 E-value=1.2e+02 Score=32.94 Aligned_cols=101 Identities=12% Similarity=0.114 Sum_probs=61.6
Q ss_pred cccCCCCCcEEecCCC-CeEe-CCCcc----------CCCe-EEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEE
Q 025441 70 DTKNLLDTVKVYDVNG-NAIP-ISDLW----------KDRK-AVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLI 136 (252)
Q Consensus 70 ~~g~~apdf~L~d~~G-~~v~-ls~l~----------~~~~-vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaV 136 (252)
.....+|+.-+...+. +.++ +.+++ ..+| +.|+|||+.|..-+...+.+| ..+|++.|+.+|.|
T Consensus 32 ~~P~~~P~~GiYhPd~~~~f~~~~eYl~w~~~~~~~~~~~P~VgIlfyrs~~~~g~~~~vdaL---I~~LE~~G~nvipv 108 (1098)
T PF02514_consen 32 EPPVPLPWNGIYHPDAGRVFESLEEYLAWYRKRGRYDPNRPTVGILFYRSYWLSGNTAVVDAL---IRALEERGLNVIPV 108 (1098)
T ss_pred CCChhccceEEEeeccccccCCHHHHHHHHhhhcccCCCCCEEEEEeehhhhhcCCcHHHHHH---HHHHHHCCCeEEEE
Confidence 4455666666665432 3332 22221 2355 558999999988777666655 66778899999999
Q ss_pred ecC----CHHHHHHHHHHcC-Cc---------ceeeecC---ChHHHHHcCCcc
Q 025441 137 GPG----SVEQARTFSEQTK-FK---------GEVYADP---NHSSYEALSFVS 173 (252)
Q Consensus 137 s~d----~~~~~~~f~~~~~-l~---------fpllsDp---~~~ly~alGv~~ 173 (252)
... ..+.++.|....+ .. |.+...+ ...+++.+|+.-
T Consensus 109 f~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~~~~~~~L~~LnVPV 162 (1098)
T PF02514_consen 109 FCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPAGGAIELLKELNVPV 162 (1098)
T ss_pred EecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCcchhHHHHHHCCCCE
Confidence 954 3356777766522 11 2222222 467888898753
No 269
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=36.02 E-value=58 Score=24.62 Aligned_cols=17 Identities=29% Similarity=0.759 Sum_probs=14.6
Q ss_pred CCCCHhhHHHHHHHHHh
Q 025441 106 HFGCVLCRKRADYLAAK 122 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~ 122 (252)
-..||+|+.++..+.+.
T Consensus 4 Dg~C~lC~~~~~~l~~~ 20 (114)
T PF04134_consen 4 DGDCPLCRREVRFLRRR 20 (114)
T ss_pred CCCCHhHHHHHHHHHhc
Confidence 46899999999988775
No 270
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=35.66 E-value=77 Score=29.37 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=40.5
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc--ceeeecCChHHHHH
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEVYADPNHSSYEA 168 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~--fpllsDp~~~ly~a 168 (252)
+...+...+++++|..+..+|.++.+.+....+..++. |+++.-.+...++.
T Consensus 151 p~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDvII~~g~i~~k~ 204 (303)
T PHA03398 151 PFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDIIICGGRKAGEY 204 (303)
T ss_pred hhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccEEEECCCccccc
Confidence 55667788889999999999988888889999999987 66555555555544
No 271
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=34.97 E-value=1.9e+02 Score=22.60 Aligned_cols=57 Identities=7% Similarity=0.063 Sum_probs=44.2
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
+=|++..+++++.++.=++|..++.+.+++..+-- -..++.-...-++.+.||+...
T Consensus 38 ~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~la-pgl~l~P~sgddLa~rL~l~hY 94 (105)
T TIGR03765 38 QWLQQNAAALKSLGAVGLVVNVETAAALQRLRALA-PGLPLLPVSGDDLAERLGLRHY 94 (105)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCcccCCCHHHHHHHhCCCcc
Confidence 34556788899999999999999998888776653 2456677777788888888754
No 272
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=34.93 E-value=2.3e+02 Score=23.12 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=40.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
..++||+-|-+.|.|.|-..=.-|++..+.+.+. +.+..|-.+ .+..|.+-+++..
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~Iylvdid---eV~~~~~~~~l~~ 77 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDID---EVPDFVKMYELYD 77 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecc---hhhhhhhhhcccC
Confidence 4589999999999999998877888887777554 556666666 4455555555543
No 273
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=34.81 E-value=67 Score=27.78 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcce
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE 156 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fp 156 (252)
+...++...+++.|.+++.||-+...-++.+++++++.+-
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~ 119 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYV 119 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchh
Confidence 3445566778899999999999988899999999998863
No 274
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=34.65 E-value=81 Score=28.11 Aligned_cols=57 Identities=18% Similarity=0.253 Sum_probs=36.8
Q ss_pred HHHHHhHHHHHhCCCE-EEEEecC------CH-HHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 117 DYLAAKKDVMDASGVA-LVLIGPG------SV-EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~-vVaVs~d------~~-~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
..|++....+++.|++ +.+|.+. +. +.+++..+++|+++.+++..+..-|..+|+..
T Consensus 42 ~~L~~f~~~~~~~~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~ 106 (285)
T PF02541_consen 42 DALKRFKEILKDYGVEKIRAVATSALREAKNSDEFLDRIKKETGIDIEIISGEEEARLSFLGVLS 106 (285)
T ss_dssp HHHHHHHHHHHHTTGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCceEEecHHHHHHHHHHHHHh
Confidence 3444555556677764 6677653 33 45566778899999999988877777766543
No 275
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=34.40 E-value=49 Score=28.05 Aligned_cols=29 Identities=14% Similarity=0.269 Sum_probs=26.0
Q ss_pred cCCCeEEEEEEcCCCCHhhHHHHHHHHHh
Q 025441 94 WKDRKAVVAFARHFGCVLCRKRADYLAAK 122 (252)
Q Consensus 94 ~~~~~vVLvF~R~~~Cp~C~~el~~L~~~ 122 (252)
|.++|.+++-|-+.+-.-|+.+++++.-.
T Consensus 116 W~gKPalivSyGGhGGg~c~~qL~~v~~f 144 (199)
T KOG4530|consen 116 WAGKPALIVSYGGHGGGRCQYQLRQVGVF 144 (199)
T ss_pred hcCCceEEEEecCCCCchHHHHHHHHHhh
Confidence 78999999999999999999999987543
No 276
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=34.04 E-value=1.1e+02 Score=28.23 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=34.8
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc--cee
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GEV 157 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~--fpl 157 (252)
+...+...+++++|+.+..+|.++.+.+.+..++.|+. |++
T Consensus 149 PgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFdv 191 (301)
T TIGR01684 149 PRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFDI 191 (301)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccCE
Confidence 56667788899999999999998888888999999998 553
No 277
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=33.19 E-value=2e+02 Score=23.67 Aligned_cols=57 Identities=5% Similarity=0.054 Sum_probs=44.4
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
.=|++..++|++.++.=++|..++.+.+++..+-- -..+++-...-++.+.||+...
T Consensus 76 ~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~la-pgl~l~P~sgddLA~rL~l~HY 132 (142)
T PF11072_consen 76 QWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLA-PGLPLLPVSGDDLARRLGLSHY 132 (142)
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHc-CCCeecCCCHHHHHHHhCCCcc
Confidence 33556788899999999999999998888876652 3456777778889999988765
No 278
>PF11948 DUF3465: Protein of unknown function (DUF3465); InterPro: IPR021856 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 131 to 151 amino acids in length. This protein has a conserved HWTH sequence motif.
Probab=32.66 E-value=66 Score=26.14 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=24.0
Q ss_pred CCccccceEEEEeCCCCeEEEEEeCCCCCCCC
Q 025441 210 RGGWQQGGIIVAGPGKSNISYIHRDKEAGDDP 241 (252)
Q Consensus 210 g~~~q~gg~fVid~ggg~I~~~h~~~~~~D~~ 241 (252)
|+....-|.|.-++.||.|.|.|.+.. +.||
T Consensus 89 GD~V~f~GeYe~n~kggvIHWTH~dp~-~~h~ 119 (131)
T PF11948_consen 89 GDQVEFYGEYEWNPKGGVIHWTHHDPR-GRHP 119 (131)
T ss_pred CCEEEEEEEEEECCCCCEEEeeccCCC-CCCC
Confidence 444667899999998899999999754 5455
No 279
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=32.51 E-value=85 Score=25.11 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=29.6
Q ss_pred HHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 118 ~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.+.+..+.+++.|..++.||.+....++.+.+++++.
T Consensus 77 g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 77 GARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred CHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 3445566777899999999998888888888888876
No 280
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=32.45 E-value=1.2e+02 Score=25.07 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=27.9
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.+....+++.|..++.||.+....++.+.++.+++
T Consensus 93 ~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 93 RDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 34445567889999999988888889999988876
No 281
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=32.13 E-value=99 Score=27.19 Aligned_cols=58 Identities=9% Similarity=0.023 Sum_probs=41.4
Q ss_pred HhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcce--eeecCChHHHH
Q 025441 110 VLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSSYE 167 (252)
Q Consensus 110 p~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fp--llsDp~~~ly~ 167 (252)
..+...+.+|.+......+.++.++.++.-+.+.+++..++.+++.| +++|-..++|.
T Consensus 15 ~~~~~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 15 DGDDEALARLEELLEQQARPEILFVYVTGRSLESVLRLLREYNLPQPDYIITSVGTEIYY 74 (247)
T ss_dssp HCHHHHHHHHHHHHHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-EE-SEEEETTTTEEEE
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEECCCCHHHHHHHHHhCCCCCCCEEEecCCeEEEE
Confidence 55666777777766644466777777777788899999999899887 88898887777
No 282
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=32.10 E-value=86 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.112 Sum_probs=30.2
Q ss_pred HHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+..|.++-.++.+.|+.||||.+|-.........++|++
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~g~~N~~~w~~Lgi~ 233 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDMGSNNISLWRELGIS 233 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCCcchHHHHHHcCCC
Confidence 566777788899999999999999776555555666654
No 283
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=31.51 E-value=2.1e+02 Score=23.49 Aligned_cols=43 Identities=16% Similarity=0.079 Sum_probs=27.9
Q ss_pred CeEEEEEEcCCCCHhh---------HHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 97 RKAVVAFARHFGCVLC---------RKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C---------~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
+|-+|+..-+.-...+ .+....|+++...+++.|+.+|.+++.
T Consensus 65 ~pdlVii~~G~ND~~~~~~~~~~~~~~~~~nl~~ii~~~~~~~~~~il~tp~ 116 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDPEYTEPYTTYKEYLRRYIAEARAKGATPILVTPV 116 (198)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHCCCeEEEECCc
Confidence 3444454455444333 245567777788888999999998764
No 284
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=31.51 E-value=1.3e+02 Score=21.79 Aligned_cols=51 Identities=16% Similarity=0.174 Sum_probs=32.4
Q ss_pred eEEEEEEcCCCCHh----hHHHHHHHHHhHHHHHhCCCEEEEEecC--CHHHHHHHHHHcCCcce
Q 025441 98 KAVVAFARHFGCVL----CRKRADYLAAKKDVMDASGVALVLIGPG--SVEQARTFSEQTKFKGE 156 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~----C~~el~~L~~~~~~~~~~Gv~vVaVs~d--~~~~~~~f~~~~~l~fp 156 (252)
+...+..|+.-||. +++.+.++ +.|-.+.+++.+ ..+.+..|+++.|..+-
T Consensus 8 ~~~~lD~~Gl~CP~Pll~~kk~l~~l--------~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 8 PDHTLDALGLRCPEPVMMVRKTVRNM--------QPGETLLIIADDPATTRDIPSFCRFMDHELL 64 (81)
T ss_pred cCeEEecCCCCCCHHHHHHHHHHHcC--------CCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 44567889999998 33333322 335444444443 34788999999887764
No 285
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=31.45 E-value=52 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=22.6
Q ss_pred CeEEEEEEcCCCCHhhHHHHHHH---HHhHHHHHhCCCEEEE
Q 025441 97 RKAVVAFARHFGCVLCRKRADYL---AAKKDVMDASGVALVL 135 (252)
Q Consensus 97 ~~vVLvF~R~~~Cp~C~~el~~L---~~~~~~~~~~Gv~vVa 135 (252)
++. |+.|....||+|...-+.| ..+.+.+ ..|+.++-
T Consensus 38 ~~~-VvEffdy~CphC~~~~~~l~~~~~~~~~~-~~~v~~~~ 77 (207)
T PRK10954 38 EPQ-VLEFFSFYCPHCYQFEEVYHVSDNVKKKL-PEGTKMTK 77 (207)
T ss_pred CCe-EEEEeCCCCccHHHhcccccchHHHHHhC-CCCCeEEE
Confidence 444 5666789999999876654 3333333 34555543
No 286
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=31.00 E-value=86 Score=26.40 Aligned_cols=32 Identities=9% Similarity=0.331 Sum_probs=25.0
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
+++|+|++ |+|.|.+-+ .-...++.+++..+.
T Consensus 149 aivVlDk~-G~VkfvkeG--aLt~aevQ~Vi~ll~ 180 (184)
T COG3054 149 AVVVLDKD-GRVKFVKEG--ALTQAEVQQVIDLLQ 180 (184)
T ss_pred eEEEEcCC-CcEEEEecC--CccHHHHHHHHHHHH
Confidence 78999999 699999865 566777888777653
No 287
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=30.96 E-value=1.5e+02 Score=24.45 Aligned_cols=40 Identities=13% Similarity=0.224 Sum_probs=31.7
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc--ce
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK--GE 156 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~--fp 156 (252)
+...+...+++++|..+..+|..+.+.++...++.++. |+
T Consensus 95 ~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~~~fd 136 (198)
T TIGR01428 95 PDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLDDPFD 136 (198)
T ss_pred CCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCChhhhh
Confidence 44455667788889999999999988888888888873 55
No 288
>PF10262 Rdx: Rdx family; InterPro: IPR011893 This entry represents the Rdx family of selenoproteins, which includes mammalian selenoproteins SelW, SelV, SelT and SelH, bacterial SelW-like proteins and cysteine-containing proteins of unknown function in all three domains of life. Mammalian Rdx12 and its fish selenoprotein orthologues are also members of this family []. These proteins possess a thioredoxin-like fold and a conserved CXXC or CxxU (U is selenocysteine) motif near the N terminus, suggesting a redox function. Rdx proteins can use catalytic cysteine (or selenocysteine) to form transient mixed disulphides with substrate proteins. Selenium (Se) plays an essential role in cell survival and most of the effects of Se are probably mediated by selenoproteins. Selenoprotein W (SelW) plays an important role in protection of neurons from oxidative stress during neuronal development [], []. Selenoprotein T (SelT) is conserved from plants to humans. SelT is localized to the endoplasmic reticulum through a hydrophobic domain. The protein binds to UDP-glucose:glycoprotein glucosyltransferase (UGTR), the endoplasmic reticulum (ER)-resident protein, which is known to be involved in the quality control of protein folding [, ]. The function of SelT is unknown, although it may have a role in PACAP signaling during PC12 cell differentiation [, ]. Selenoprotein H (SelH) protects neurons against UVB-induced damage by inhibiting apoptotic cell death pathways, by preventing mitochondrial depolarization, and by promoting cell survival pathways [].; GO: 0008430 selenium binding, 0045454 cell redox homeostasis; PDB: 2OJL_B 2FA8_A 2P0G_C 2NPB_A 3DEX_C 2OKA_A 2OBK_G.
Probab=30.65 E-value=27 Score=25.08 Aligned_cols=35 Identities=14% Similarity=0.252 Sum_probs=26.8
Q ss_pred ccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 214 QQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 214 q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
..+|.|-|.-+ |+++|.-.. .+..|+.++|+++++
T Consensus 40 ~~~G~FEV~v~-g~lI~SK~~--~g~fP~~~~i~~~I~ 74 (76)
T PF10262_consen 40 GSTGAFEVTVN-GELIFSKLE--SGRFPDPDEIVQLIR 74 (76)
T ss_dssp ESTT-EEEEET-TEEEEEHHH--HTSSS-HHHHHHHHH
T ss_pred ccCCEEEEEEc-cEEEEEehh--cCCCCCHHHHHHHHh
Confidence 45789988887 699987765 568999999999886
No 289
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=30.55 E-value=1.5e+02 Score=20.15 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCEEEEEecCC--HHHHHHHHHHcCCcceeeec
Q 025441 129 SGVALVLIGPGS--VEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 129 ~Gv~vVaVs~d~--~~~~~~f~~~~~l~fpllsD 160 (252)
.|-.+.++..+. ...+..|+++.|+.+....+
T Consensus 25 ~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~~~~~ 58 (69)
T cd00291 25 SGEVLEVLLDDPGAVEDIPAWAKETGHEVLEVEE 58 (69)
T ss_pred CCCEEEEEecCCcHHHHHHHHHHHcCCEEEEEEE
Confidence 355555555443 57899999999988755444
No 290
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=30.37 E-value=57 Score=22.84 Aligned_cols=57 Identities=11% Similarity=-0.054 Sum_probs=33.6
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH-HHHHHHHHcCC-cceeeecCCh
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKF-KGEVYADPNH 163 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~-~~~~f~~~~~l-~fpllsDp~~ 163 (252)
.+|....|++|++-.-.|.+. +...+++.|.....+ ...+|.+-+.. ..|++.|.+.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~-----gl~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~~~g~ 60 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEK-----GLRCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLIHGDN 60 (73)
T ss_pred EEecCCCCccHHHHHHHHHHc-----CCCCEEEEecCCcCccCCHHHHHhCcCCCCCEEEECCE
Confidence 467888999997765544332 223456666553322 23456666554 4788877543
No 291
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=29.90 E-value=94 Score=26.17 Aligned_cols=47 Identities=6% Similarity=0.103 Sum_probs=37.3
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc-ceeeecCChHHHH
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK-GEVYADPNHSSYE 167 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~-fpllsDp~~~ly~ 167 (252)
+...++++.|+.++.++--+...++.+.+..++. .++++.-...+|.
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~~~~~I~~NGa~i~~ 70 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLTGDPYIAENGAAIHL 70 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCCCcEEEeCCcEEEc
Confidence 4455567899999999999999999999999887 6677766666654
No 292
>PRK06683 hypothetical protein; Provisional
Probab=29.86 E-value=2.1e+02 Score=20.95 Aligned_cols=52 Identities=10% Similarity=-0.038 Sum_probs=36.9
Q ss_pred HHHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCcccc
Q 025441 123 KDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVSGV 175 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~~~ 175 (252)
...++...+++|.|..|-.+ .+...++.+++|+-.+ +...++-++.|+....
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~-~t~~eLG~A~G~~~~~ 75 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKV-ESVRKLGKVAGIQVGA 75 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHhCCcccE
Confidence 34455566889999988664 4455678888888444 4778999999987654
No 293
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=29.70 E-value=69 Score=21.99 Aligned_cols=54 Identities=13% Similarity=0.042 Sum_probs=30.3
Q ss_pred EEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC--cceeeecCCh
Q 025441 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--KGEVYADPNH 163 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l--~fpllsDp~~ 163 (252)
+|-...||+|++-.-.|.+. +...+++.+... .....|.+.+.. ..|++.|.+.
T Consensus 3 Ly~~~~sp~~~~v~~~l~~~-----gl~~~~~~~~~~--~~~~~~~~~~p~~~~vP~l~~~~~ 58 (74)
T cd03058 3 LLGAWASPFVLRVRIALALK-----GVPYEYVEEDLG--NKSELLLASNPVHKKIPVLLHNGK 58 (74)
T ss_pred EEECCCCchHHHHHHHHHHc-----CCCCEEEEeCcc--cCCHHHHHhCCCCCCCCEEEECCE
Confidence 45567899999876665442 222455544433 223345555442 5777777543
No 294
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=29.52 E-value=1e+02 Score=25.94 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=49.8
Q ss_pred CCCCCcEEecCCCCeEeCCC--ccCCC-eEEEEEEcCCCCHhhHHHH-HHHHHhHHHHHhCCC--EEEEEecC-------
Q 025441 73 NLLDTVKVYDVNGNAIPISD--LWKDR-KAVVAFARHFGCVLCRKRA-DYLAAKKDVMDASGV--ALVLIGPG------- 139 (252)
Q Consensus 73 ~~apdf~L~d~~G~~v~ls~--l~~~~-~vVLvF~R~~~Cp~C~~el-~~L~~~~~~~~~~Gv--~vVaVs~d------- 139 (252)
--.|+..+.|... +++.. |.+.+ +.||+-+=.+-++.=..++ +++.+..+++++.+. .|+.||-.
T Consensus 16 l~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~ 93 (168)
T PF09419_consen 16 LLLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP 93 (168)
T ss_pred ccCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc
Confidence 3456666655532 33443 53333 5666666555554444443 466677777877765 48999876
Q ss_pred CHHHHHHHHHHcCCcc
Q 025441 140 SVEQARTFSEQTKFKG 155 (252)
Q Consensus 140 ~~~~~~~f~~~~~l~f 155 (252)
+...++.+.+..++|+
T Consensus 94 ~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 94 DGERAEALEKALGIPV 109 (168)
T ss_pred cHHHHHHHHHhhCCcE
Confidence 3567888888877664
No 295
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=29.24 E-value=1.5e+02 Score=22.18 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=27.7
Q ss_pred CCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHH
Q 025441 129 SGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSS 165 (252)
Q Consensus 129 ~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~l 165 (252)
.++++++|.-.+++..+.+.++++++ .|.|.+.-+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~~--~~~~~~~ll 58 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGIP--VYTDLEELL 58 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTSE--EESSHHHHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhccc--chhHHHHHH
Confidence 46799999988899999999998777 787755333
No 296
>TIGR02765 crypto_DASH cryptochrome, DASH family. Photolyases and cryptochromes are related flavoproteins. Photolyases harness the energy of blue light to repair DNA damage by removing pyrimidine dimers. Cryptochromes do not repair DNA and are presumed to act instead in some other (possibly unknown) process such as entraining circadian rhythms. This model describes the cryptochrome DASH subfamily, one of at least five major subfamilies, which is found in plants, animals, marine bacteria, etc. Members of this family bind both folate and FAD. They may show weak photolyase activity in vitro but have not been shown to affect DNA repair in vivo. Rather, DASH family cryptochromes have been shown to bind RNA (Vibrio cholerae VC1814), or DNA, and seem likely to act in light-responsive regulatory processes.
Probab=29.18 E-value=1.3e+02 Score=28.65 Aligned_cols=47 Identities=9% Similarity=0.121 Sum_probs=36.8
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCC
Q 025441 115 RADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 115 el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~ 162 (252)
-+..|+++..++++.|..++....+..+.+.++++++++.- |+.|.+
T Consensus 59 l~esL~~L~~~L~~~g~~L~v~~G~~~~vl~~L~~~~~~~~-V~~~~~ 105 (429)
T TIGR02765 59 LLESLKDLRTSLRKLGSDLLVRSGKPEDVLPELIKELGVRT-VFLHQE 105 (429)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHhCCCE-EEEecc
Confidence 34678888889999999999987777788899999887653 566543
No 297
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=28.49 E-value=3.3e+02 Score=24.03 Aligned_cols=75 Identities=13% Similarity=0.091 Sum_probs=45.3
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec-CCHHHHHHHHHHcCCcceeeec---CChHHHHHcCCccc
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYAD---PNHSSYEALSFVSG 174 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~-d~~~~~~~f~~~~~l~fpllsD---p~~~ly~alGv~~~ 174 (252)
++++-|-.-...=..-+.+--+....+.+.|++.|.|-. .+.+.++++.++.+.|.-+... .+.+-++.+|+..-
T Consensus 138 ~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~~Pl~v~~~~~~~~~~eL~~lGv~~v 216 (238)
T PF13714_consen 138 FVIIARTDAFLRAEEGLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVDGPLNVNPGPGTLSAEELAELGVKRV 216 (238)
T ss_dssp SEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHSSEEEEETTSSSS-HHHHHHTTESEE
T ss_pred EEEEEeccccccCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcCCCEEEEcCCCCCCHHHHHHCCCcEE
Confidence 555555432110123334444455667899999888754 6678899999998777655543 34455777887654
No 298
>PF02244 Propep_M14: Carboxypeptidase activation peptide; InterPro: IPR003146 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The peptidases are synthesised as inactive molecules, zymogens, with propeptides that must be removed by proteolytic cleavage to activate the enzyme. Structural studies of carboxypeptidases A and B reveal the propeptide to exist as a globular domain, followed by an extended alpha-helix; this shields the catalytic site, without specifically binding to it, while the substrate-binding site is blocked by making specific contacts [, ]. Members of this propeptide family are found in the metallocarboxypeptidases: A1, A2 [], A3, A4, A5, A6, U, insect gut carboxypeptidase and B [], and and are associated with peptidases belonging to MEROPS peptidase family M14A. Carboxypeptidases are found in abundance in pancreatic secretions. The pro-segment moiety (activation peptide) accounts for up to a quarter of the total length of the peptidase.; GO: 0004180 carboxypeptidase activity, 0006508 proteolysis; PDB: 3D68_C 3D67_B 3D66_A 1PBA_A 3GLJ_A 1NSA_A 1KWM_A 2BOA_B 1PYT_A 1JQG_A ....
Probab=28.32 E-value=70 Score=22.31 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=24.2
Q ss_pred EEEEEecCCHHHHHHHHHHcCCcceeeecC
Q 025441 132 ALVLIGPGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 132 ~vVaVs~d~~~~~~~f~~~~~l~fpllsDp 161 (252)
.=|.|.+........+.++.+++|.|+.|-
T Consensus 36 ~dv~V~p~~~~~f~~~L~~~~i~~~v~i~d 65 (74)
T PF02244_consen 36 VDVMVPPEKLEEFEELLKEHGIEYEVLIED 65 (74)
T ss_dssp EEEEEEGGGHHHHHHHHHHTT-EEEEEES-
T ss_pred EEEEECHHHHHHHHHHHHHCCCcEEEEeHH
Confidence 457788888899999999999999987763
No 299
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.32 E-value=22 Score=33.30 Aligned_cols=33 Identities=24% Similarity=0.444 Sum_probs=27.3
Q ss_pred ecCCHHHHHHHHHHcCCcceeeecCC-hHHHHHcC
Q 025441 137 GPGSVEQARTFSEQTKFKGEVYADPN-HSSYEALS 170 (252)
Q Consensus 137 s~d~~~~~~~f~~~~~l~fpllsDp~-~~ly~alG 170 (252)
.++++...++|.+- +.-|.||+||+ |+.|..+|
T Consensus 49 Npddp~A~e~F~~i-n~AYEVLsDpekRk~YD~~G 82 (336)
T KOG0713|consen 49 NPDDPNANEKFKEI-NAAYEVLSDPEKRKHYDTYG 82 (336)
T ss_pred CCCCHHHHHHHHHH-HHHHHHhcCHHHHHHHHhhh
Confidence 45777788888765 68899999997 68899998
No 300
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=27.89 E-value=96 Score=29.30 Aligned_cols=44 Identities=16% Similarity=0.223 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 111 LCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 111 ~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.|..-..++......+.+.+.+|++|..-+.+.+++|++++++|
T Consensus 13 g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~ 56 (351)
T KOG2741|consen 13 GAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIP 56 (351)
T ss_pred ehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCC
Confidence 35566666666555555678999999998999999999999994
No 301
>PLN02954 phosphoserine phosphatase
Probab=27.46 E-value=1.2e+02 Score=25.39 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=31.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
+.+.+....+++.|..+..||.+....++...+.++++.
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~ 125 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPP 125 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCCh
Confidence 344556667778999999999998888898999988873
No 302
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=27.36 E-value=1.8e+02 Score=24.49 Aligned_cols=47 Identities=15% Similarity=0.114 Sum_probs=34.2
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHH
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly 166 (252)
.+...++++.|+.++.++--+...+..+.++.+++.++++.-...+|
T Consensus 26 ~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~i~~nGa~i~ 72 (230)
T PRK01158 26 VEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSGPVIAENGGVIS 72 (230)
T ss_pred HHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCcEEEecCeEEE
Confidence 34455677899999888887778888888888887666665444444
No 303
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=27.10 E-value=1.8e+02 Score=28.58 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=37.2
Q ss_pred ccCCCeEEEEEEcC-CCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH
Q 025441 93 LWKDRKAVVAFARH-FGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 93 l~~~~~vVLvF~R~-~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~ 141 (252)
++++++++|.-=|+ .-.|.-|++.. .+..|.+++.|-.|++|+.|++
T Consensus 463 llEeR~Ilv~DEWAADQDPaFRR~FY--~~lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 463 LLEERDILVLDEWAADQDPAFRREFY--QVLLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred HHhhCCeEEeehhhccCChHHHHHHH--HHHhHHHHHhCCeEEEEecCch
Confidence 34678888888777 46777777654 3568889999999999999987
No 304
>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.
Probab=26.92 E-value=70 Score=24.73 Aligned_cols=30 Identities=23% Similarity=0.224 Sum_probs=22.6
Q ss_pred EEEecCCHHHHHHHHHHcCCcceeeecCCh
Q 025441 134 VLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 134 VaVs~d~~~~~~~f~~~~~l~fpllsDp~~ 163 (252)
+-+.-++.+.+.+|++++|++|.|.....+
T Consensus 51 v~l~F~skE~Ai~yaer~G~~Y~V~~p~~r 80 (101)
T PF04800_consen 51 VRLKFDSKEDAIAYAERNGWDYEVEEPKKR 80 (101)
T ss_dssp CEEEESSHHHHHHHHHHCT-EEEEE-STT-
T ss_pred eEeeeCCHHHHHHHHHHcCCeEEEeCCCCC
Confidence 556778889999999999999998865443
No 305
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=26.70 E-value=2e+02 Score=22.85 Aligned_cols=63 Identities=13% Similarity=0.151 Sum_probs=45.8
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec--C--CHHHHHHHHHHcCCcceeeecCChHHHHHcCCc
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP--G--SVEQARTFSEQTKFKGEVYADPNHSSYEALSFV 172 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~--d--~~~~~~~f~~~~~l~fpllsDp~~~ly~alGv~ 172 (252)
+.+|-..-|.-|++...-| ++.|+.+-.+.. + +.+.++.|.++. +.+-+.......|+.++..
T Consensus 3 i~iY~~p~Cst~RKA~~~L-------~~~gi~~~~~d~~~~p~t~~eL~~~l~~~--g~~~lin~~~~~~r~l~~~ 69 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAAL-------KASGHDVEVQDILKEPWHADTLRPYFGNK--PVGSWFNRAAPRVKSGEVN 69 (126)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCCcEEEeccCCCcCHHHHHHHHHHc--CHHHHHhccchHhhhCCCC
Confidence 4578889999999866654 666777766653 2 347999999985 4455566777889988854
No 306
>PF11360 DUF3110: Protein of unknown function (DUF3110); InterPro: IPR021503 This family of proteins has no known function.
Probab=26.70 E-value=1.8e+02 Score=21.67 Aligned_cols=64 Identities=17% Similarity=0.254 Sum_probs=39.1
Q ss_pred CCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeee
Q 025441 84 NGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 84 ~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fplls 159 (252)
++...++.. +++.+|++| +.-.+=.+....|++.+...-.|-.=+.+.+..|+++.|+.+.++.
T Consensus 12 ~eGI~si~~--~~~~~Vl~F----------E~edDA~RYa~lLEAqd~~~p~Ve~id~~~i~~fC~~~gy~~~iv~ 75 (86)
T PF11360_consen 12 TEGIYSIQN--KDRNVVLMF----------EDEDDAERYAGLLEAQDFPDPTVEEIDPEEIEEFCRSAGYEYEIVP 75 (86)
T ss_pred CCcEEEEEe--CCCCEEEEE----------ccHHHHHHHHHHHHhcCCCCCCeEEECHHHHHHHHHHCCceEEEEC
Confidence 334555543 347889998 2223333334445555555444444456789999999999887764
No 307
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.45 E-value=1.5e+02 Score=25.99 Aligned_cols=36 Identities=19% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcc
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKG 155 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~f 155 (252)
.++-..+++.|++|+.||-+=...+.--+++.++|+
T Consensus 94 ~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 94 RELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred HHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 344556789999999999998778888889999998
No 308
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=26.42 E-value=76 Score=21.74 Aligned_cols=57 Identities=14% Similarity=0.061 Sum_probs=32.4
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHH-HHHHHHHHcCCc-ceeeecCC
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFK-GEVYADPN 162 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~-~~~~f~~~~~l~-fpllsDp~ 162 (252)
+.+|....|++|++-.-.|.+. +...+++.|.....+ .-..|.+.+.+. .|++.|.+
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~-----~i~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~~~g 60 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEK-----GVDYELVPVDLTKGEHKSPEHLARNPFGQIPALEDGD 60 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHc-----CCCcEEEEeCccccccCCHHHHhhCCCCCCCEEEECC
Confidence 4577788899998766665442 222445555543221 223466655543 67777753
No 309
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=25.90 E-value=1.1e+02 Score=25.51 Aligned_cols=36 Identities=11% Similarity=0.123 Sum_probs=28.7
Q ss_pred HHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
..+..+.+++.|..++.||.+....++.+.++.++.
T Consensus 90 ~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 90 AEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred HHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 334456667889999999999888888888888875
No 310
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=25.78 E-value=3e+02 Score=20.90 Aligned_cols=51 Identities=18% Similarity=0.233 Sum_probs=32.6
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
++.-+++++=..+. -.++.+..+..++.|+.+|+|..++ .+.+++++.+..
T Consensus 42 ~~~dl~I~iS~SG~------t~e~i~~~~~a~~~g~~iI~IT~~~--~l~~~~~~~~~~ 92 (119)
T cd05017 42 DRKTLVIAVSYSGN------TEETLSAVEQAKERGAKIVAITSGG--KLLEMAREHGVP 92 (119)
T ss_pred CCCCEEEEEECCCC------CHHHHHHHHHHHHCCCEEEEEeCCc--hHHHHHHHcCCc
Confidence 34456666666663 3344444555678899999999765 366777776544
No 311
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=25.71 E-value=97 Score=30.66 Aligned_cols=42 Identities=12% Similarity=0.201 Sum_probs=28.4
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
++|+-|-.|-..+||+|..-...++++..+. -++..-.|-..
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~--~~i~~~~i~~~ 516 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLN--PNVEAEMIDVS 516 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhC--CCceEEEEECc
Confidence 4687787888999999997777665554431 15665555544
No 312
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=25.08 E-value=1.4e+02 Score=25.97 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=24.2
Q ss_pred HHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCCcceeeecC
Q 025441 116 ADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l~fpllsDp 161 (252)
..+|.++.+.+++.++.+|....... ..++..+++.|.+. +..|+
T Consensus 185 ~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~v-v~ld~ 230 (256)
T PF01297_consen 185 PKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKV-VYLDP 230 (256)
T ss_dssp HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EE-EESST
T ss_pred HHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcE-EEeCC
Confidence 44555566666677777777666544 34455555566555 44443
No 313
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=25.03 E-value=1.4e+02 Score=24.26 Aligned_cols=35 Identities=11% Similarity=0.171 Sum_probs=28.2
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
.+....+++.|+.++.||.+....++...+.+++.
T Consensus 86 ~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 86 EELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred HHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 44566677889999999998888888888888865
No 314
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=24.71 E-value=1.2e+02 Score=22.98 Aligned_cols=37 Identities=11% Similarity=0.182 Sum_probs=23.9
Q ss_pred cccceEEEEeCCCCeEEEEEeCC-----CCCCCCCHHHHHHHhh
Q 025441 213 WQQGGIIVAGPGKSNISYIHRDK-----EAGDDPDIQDILKACC 251 (252)
Q Consensus 213 ~q~gg~fVid~ggg~I~~~h~~~-----~~~D~~~~~eIL~al~ 251 (252)
.+.|+ .|++++ |+|+..-++. ++..|+++..|..+.+
T Consensus 17 ~~vga-viv~~~-~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~ 58 (109)
T cd01285 17 VPFGA-VIVDDD-GKVIARGHNRVEQDGDPTAHAEIVAIRNAAR 58 (109)
T ss_pred CcEEE-EEEeCC-CEEEEEEeCCCCCCCCCcccHHHHHHHHHHH
Confidence 34555 455665 4776554443 4788999998887754
No 315
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=24.71 E-value=1.1e+02 Score=23.88 Aligned_cols=38 Identities=16% Similarity=0.127 Sum_probs=25.9
Q ss_pred cccceEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 213 WQQGGIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 213 ~q~gg~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
.+.|+++| +++|..|.-.|-......|+++..|.++.+
T Consensus 19 ~pvGaviv-~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~ 56 (115)
T cd01284 19 PPVGCVIV-DDDGEIVGEGYHRKAGGPHAEVNALASAGE 56 (115)
T ss_pred CCEEEEEE-eCCCeEEEEecCCCCCcccHHHHHHHHHhh
Confidence 45666665 554334555666666789999999988765
No 316
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=24.70 E-value=2.1e+02 Score=23.85 Aligned_cols=38 Identities=24% Similarity=0.317 Sum_probs=29.1
Q ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeec
Q 025441 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsD 160 (252)
..++++.|+.++..+--+...+..+.++.+++.++++.
T Consensus 24 l~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~~~~i~~ 61 (225)
T TIGR01482 24 IRKAESVGIPVVLVTGNSVQFARALAKLIGTPDPVIAE 61 (225)
T ss_pred HHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCCeEEEe
Confidence 45567899998888887778888888888876555544
No 317
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=24.69 E-value=2.1e+02 Score=20.14 Aligned_cols=46 Identities=9% Similarity=0.066 Sum_probs=31.9
Q ss_pred HHHHHHhHHHHHhCCCEEEEEec-CCHHHHHHHHHHcCCcceeeecC
Q 025441 116 ADYLAAKKDVMDASGVALVLIGP-GSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~-d~~~~~~~f~~~~~l~fpllsDp 161 (252)
.....+...++++.|+.+..-.. .+....-.++++.|++|-++.+.
T Consensus 17 ~~~a~~~~~~Lr~~g~~v~~~~~~~~~~k~~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 17 REYAQKLLNALLANGIRVLYDDRERKIGKKFREADLRGVPFAVVVGE 63 (94)
T ss_pred HHHHHHHHHHHHHCCCEEEecCCCcCHhHHHHHHHhCCCCEEEEECC
Confidence 34444566778889988776443 44566667778889999887764
No 318
>PRK07714 hypothetical protein; Provisional
Probab=24.51 E-value=2.8e+02 Score=20.82 Aligned_cols=50 Identities=8% Similarity=-0.021 Sum_probs=34.4
Q ss_pred HHHHHhCCCEEEEEecCCHH----HHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 123 KDVMDASGVALVLIGPGSVE----QARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~----~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
.+.++...+.+|.|..|-.+ .+..+++.+++|+- +.....++-+++|...
T Consensus 27 ~~al~~g~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~-~~~sk~eLG~a~Gk~~ 80 (100)
T PRK07714 27 LKEVRSGKAKLVLLSEDASVNTTKKITDKCTYYNVPMR-KVENRQQLGHAIGKDE 80 (100)
T ss_pred HHHHHhCCceEEEEeCCCCHHHHHHHHHHHHhcCCCEE-EeCCHHHHHHHhCCCc
Confidence 44555666889999887653 44455677778874 4467788888998653
No 319
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=24.29 E-value=2.4e+02 Score=19.26 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=33.9
Q ss_pred EEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH--HHHHHHHHHcCCcceeeec
Q 025441 102 AFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV--EQARTFSEQTKFKGEVYAD 160 (252)
Q Consensus 102 vF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~--~~~~~f~~~~~l~fpllsD 160 (252)
+..|+.-||..--.+..- .+++ ..|-.+.++..+.. +.+..|+++.|+.+--..+
T Consensus 3 lD~rg~~CP~Pll~~~~~---l~~l-~~G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~ 59 (70)
T PF01206_consen 3 LDLRGLSCPMPLLKAKKA---LKEL-PPGEVLEVLVDDPAAVEDIPRWCEENGYEVVEVEE 59 (70)
T ss_dssp EECSS-STTHHHHHHHHH---HHTS-GTT-EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE
T ss_pred EeCCCCCCCHHHHHHHHH---HHhc-CCCCEEEEEECCccHHHHHHHHHHHCCCEEEEEEE
Confidence 567899999987555432 1111 34656656655544 6899999999987654433
No 320
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=23.92 E-value=1.3e+02 Score=27.81 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=35.9
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHH
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly 166 (252)
+...+++++|+.||..+.-+...+..+.++.++..++++.....+|
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~p~I~eNGA~I~ 70 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEHPFICEDGSAIY 70 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEEeCCcEEE
Confidence 3456677899999999988888999999999998776665544444
No 321
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=23.82 E-value=2.6e+02 Score=22.09 Aligned_cols=50 Identities=16% Similarity=0.155 Sum_probs=36.9
Q ss_pred HHHHHhCCCEEEEEecCCH-----HHHHHHHHHcCCcceeeecCChHHHHHcCCcc
Q 025441 123 KDVMDASGVALVLIGPGSV-----EQARTFSEQTKFKGEVYADPNHSSYEALSFVS 173 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~-----~~~~~f~~~~~l~fpllsDp~~~ly~alGv~~ 173 (252)
...++...+.+|.|..|-. ..+..+++++++|+ ++.....++-++.|...
T Consensus 39 ~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~-~~~~tk~eLG~a~Gk~~ 93 (122)
T PRK04175 39 TKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPY-VYVPSKKDLGKAAGLEV 93 (122)
T ss_pred HHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCE-EEECCHHHHHHHhCCCC
Confidence 3445555688888887752 34566789999997 77777889999999863
No 322
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=23.72 E-value=1.1e+02 Score=25.73 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=36.4
Q ss_pred EEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC-cceeeecCChHHHHH
Q 025441 100 VVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF-KGEVYADPNHSSYEA 168 (252)
Q Consensus 100 VLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l-~fpllsDp~~~ly~a 168 (252)
.+-.|-+.+|++|++-.-.|.+. +...+++-|..+ ....+|.+.+.. ..|++.|.+..+++.
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~-----gl~~e~~~v~~~--~~~~~~~~~nP~g~VPvL~~~g~~l~ES 72 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEK-----GVSVEIEQVEKD--NLPQDLIDLNPYQSVPTLVDRELTLYES 72 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHC-----CCCCEEEeCCcc--cCCHHHHHhCCCCCCCEEEECCEEeeCH
Confidence 45677778999999877665442 222445555433 223456666554 367777765444333
No 323
>PRK10200 putative racemase; Provisional
Probab=23.68 E-value=1.5e+02 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.133 Sum_probs=31.3
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEecCCHH-HHHHHHHHcCCcceeee
Q 025441 115 RADYLAAKKDVMDASGVALVLIGPGSVE-QARTFSEQTKFKGEVYA 159 (252)
Q Consensus 115 el~~L~~~~~~~~~~Gv~vVaVs~d~~~-~~~~f~~~~~l~fplls 159 (252)
-.+.|.+....|++.|+++|+|.+-+.. ......++. +.|++.
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~--~iPii~ 103 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRC--SLPFLH 103 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhC--CCCEee
Confidence 4577888888899999999999998875 344455554 445443
No 324
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=23.12 E-value=2.3e+02 Score=23.41 Aligned_cols=44 Identities=9% Similarity=0.111 Sum_probs=32.7
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChH
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHS 164 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ 164 (252)
+...+++++|+.++..+--+...+..+.++.++..++++.-...
T Consensus 22 ~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~~~~I~~nGa~ 65 (254)
T PF08282_consen 22 EALKELQEKGIKLVIATGRSYSSIKRLLKELGIDDYFICSNGAL 65 (254)
T ss_dssp HHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHCSEEEEGGGTE
T ss_pred HHHHhhcccceEEEEEccCcccccccccccccchhhhcccccce
Confidence 33445677899988888888889999999988886665543333
No 325
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=23.07 E-value=20 Score=33.52 Aligned_cols=35 Identities=17% Similarity=0.338 Sum_probs=25.1
Q ss_pred cEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHH
Q 025441 78 VKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRAD 117 (252)
Q Consensus 78 f~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~ 117 (252)
++..|.+|+.|.+-+-+.+. ++- .+.||.|..++.
T Consensus 2 ltA~~~ngq~v~ll~~~~k~--~~~---~ffCPaC~~~l~ 36 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT--QLQ---RFFCPACGSQLI 36 (342)
T ss_pred ceeecCCCCEEEehhhHHHh--hhh---ccccCCCCCeee
Confidence 57889999999998775332 221 378999987653
No 326
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.02 E-value=92 Score=27.62 Aligned_cols=59 Identities=5% Similarity=-0.003 Sum_probs=38.2
Q ss_pred CCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcce
Q 025441 96 DRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE 156 (252)
Q Consensus 96 ~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fp 156 (252)
++..+++-|++.||..|..--+-+....+.+ .+++.+-+..+....+-.-.+-...|+-
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~~~eis~~~~v~~vp~~ 74 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEEFPEISNLIAVEAVPYF 74 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhhhhHHHHHHHHhcCcee
Confidence 4566778889999999997777776666666 5566666665554444433333344543
No 327
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=22.95 E-value=2.5e+02 Score=23.96 Aligned_cols=49 Identities=12% Similarity=0.048 Sum_probs=35.9
Q ss_pred HHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcce--eeecCChHH
Q 025441 116 ADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGE--VYADPNHSS 165 (252)
Q Consensus 116 l~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fp--llsDp~~~l 165 (252)
+..+.+... ..++|+.++.++--+...++.+.++.+++.| ++++-...+
T Consensus 17 ~~~~~~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~~~~I~~nGa~i 67 (236)
T TIGR02471 17 LASFVELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSPDVLIARVGTEI 67 (236)
T ss_pred HHHHHHHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCCCEEEECCCceE
Confidence 344444444 4788999888888888999999999888655 677665554
No 328
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=22.85 E-value=1.5e+02 Score=30.51 Aligned_cols=31 Identities=13% Similarity=0.141 Sum_probs=17.3
Q ss_pred HHHHHhCCCEEEEEecCCHHHHHHHHHHcCC
Q 025441 123 KDVMDASGVALVLIGPGSVEQARTFSEQTKF 153 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l 153 (252)
.++++++|++++.|+-|++..++..+++.|+
T Consensus 454 i~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI 484 (679)
T PRK01122 454 FAELRKMGIKTVMITGDNPLTAAAIAAEAGV 484 (679)
T ss_pred HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 3445555555555555555555555555555
No 329
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=22.77 E-value=1.6e+02 Score=30.33 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=24.0
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+..++++++|++++.|+-|++..+++.+++.|+.
T Consensus 448 e~I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI~ 481 (673)
T PRK14010 448 ERFRELREMGIETVMCTGDNELTAATIAKEAGVD 481 (673)
T ss_pred HHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCc
Confidence 3455666777777777777777777777777764
No 330
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.72 E-value=1.1e+02 Score=20.53 Aligned_cols=55 Identities=13% Similarity=-0.117 Sum_probs=30.4
Q ss_pred EEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH-HHHHHHHHHcCC-cceeeecCC
Q 025441 103 FARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV-EQARTFSEQTKF-KGEVYADPN 162 (252)
Q Consensus 103 F~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~-~~~~~f~~~~~l-~fpllsDp~ 162 (252)
+|...+||+|++-.-.|.+. +...+.+-|..... .....|.+.+.. ..|++.|.+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~~~ 59 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALL-----GIPYEWVEVDILKGETRTPEFLALNPNGEVPVLELDG 59 (73)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEecCCCcccCCHHHHHhCCCCCCCEEEECC
Confidence 46678899999665555432 22344555554222 233455555443 468777754
No 331
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=22.64 E-value=2.4e+02 Score=27.63 Aligned_cols=65 Identities=12% Similarity=0.040 Sum_probs=48.6
Q ss_pred CCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC
Q 025441 73 NLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS 140 (252)
Q Consensus 73 ~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~ 140 (252)
+.+..+.+.=.+|+.|++++|.+...+||+- +. --+|.+-+...+.+..+|.+.||-||-|..+.
T Consensus 274 e~L~rL~v~l~~~~~v~l~~LRg~~RvvIvA--G~-~e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 274 ETLSRLPVRLSTNRIVELVQLRDITRPVILA--GT-KESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred hhhccceEeccCCCEEeHHHhcCcceEEEEE--CC-HHHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 4445555544467899999996555555532 33 37888999999999999999999999998763
No 332
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=22.52 E-value=2.2e+02 Score=23.92 Aligned_cols=36 Identities=8% Similarity=0.146 Sum_probs=27.5
Q ss_pred HHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+.+....+++.|+.+..+|......++.+.++.++.
T Consensus 97 ~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 132 (222)
T PRK10826 97 VREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR 132 (222)
T ss_pred HHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch
Confidence 444556677889999999988888888888887764
No 333
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=22.46 E-value=3e+02 Score=22.41 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=35.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHH---HHHHHH-----cCCc-ceeeecCChHHH
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQA---RTFSEQ-----TKFK-GEVYADPNHSSY 166 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~---~~f~~~-----~~l~-fpllsDp~~~ly 166 (252)
+...+.+.++++.|..++.++.-+.... ++|.++ +++| .+++.-++..++
T Consensus 30 ~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~ 88 (157)
T smart00775 30 PGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFA 88 (157)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchh
Confidence 4445567778889999888887766444 578877 4576 478777766554
No 334
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=22.25 E-value=1e+02 Score=27.89 Aligned_cols=19 Identities=16% Similarity=-0.003 Sum_probs=13.7
Q ss_pred HHHHHhCCCEEEEEecCCH
Q 025441 123 KDVMDASGVALVLIGPGSV 141 (252)
Q Consensus 123 ~~~~~~~Gv~vVaVs~d~~ 141 (252)
..++.+.|+.++.|..|++
T Consensus 187 ~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 187 LREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHcCCeEEEEEEcCC
Confidence 4556777888888877765
No 335
>TIGR02949 anti_SigH_actin anti-sigma factor, TIGR02949 family. This group of anti-sigma factors are associated in an apparent operon with a family of sigma-70 family sigma factors (TIGR02947). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is restricted to the Actinobacteria.
Probab=22.21 E-value=94 Score=22.83 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCCHhhHHHHHHHHHhHHHHHhC
Q 025441 107 FGCVLCRKRADYLAAKKDVMDAS 129 (252)
Q Consensus 107 ~~Cp~C~~el~~L~~~~~~~~~~ 129 (252)
..||.|+.++..++.....++..
T Consensus 37 ~~C~~C~~e~~~~~~~~~~L~~~ 59 (84)
T TIGR02949 37 EACPECLEEYGLEQAVKKLLKRC 59 (84)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHh
Confidence 47999999998776666666554
No 336
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=22.16 E-value=3e+02 Score=19.63 Aligned_cols=48 Identities=6% Similarity=0.046 Sum_probs=32.8
Q ss_pred HHHHH-HHhHHHHHhCCCEEEEEe-cCCHHHHHHHHHHcCCcceeeecCC
Q 025441 115 RADYL-AAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGEVYADPN 162 (252)
Q Consensus 115 el~~L-~~~~~~~~~~Gv~vVaVs-~d~~~~~~~f~~~~~l~fpllsDp~ 162 (252)
++.++ .++...|++.|+.+..-. ..+....-..++..|+||-++..++
T Consensus 13 ~~~~~a~~l~~~L~~~gi~v~~d~~~~~~~k~~~~a~~~g~p~~iiiG~~ 62 (94)
T PF03129_consen 13 EIIEYAQELANKLRKAGIRVELDDSDKSLGKQIKYADKLGIPFIIIIGEK 62 (94)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEESSSSTHHHHHHHHHHTTESEEEEEEHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCCCchhHHHHHHhhcCCeEEEEECch
Confidence 33333 356788999998776664 3445566667788899999876543
No 337
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=22.10 E-value=35 Score=31.87 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=19.3
Q ss_pred eEEEEEEcCCCCHhhHHHHHHHHHhHHHHHh
Q 025441 98 KAVVAFARHFGCVLCRKRADYLAAKKDVMDA 128 (252)
Q Consensus 98 ~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~ 128 (252)
-.-++-|.+.||..|.+--+-..+.--+++.
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkd 74 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKD 74 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhh
Confidence 3556667799999998755544443333333
No 338
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.03 E-value=2.3e+02 Score=24.70 Aligned_cols=60 Identities=17% Similarity=0.180 Sum_probs=37.5
Q ss_pred CCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCC-----------HHHHHHHHHHcCCcce--eeecCChHHHHHcCC
Q 025441 106 HFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGS-----------VEQARTFSEQTKFKGE--VYADPNHSSYEALSF 171 (252)
Q Consensus 106 ~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~-----------~~~~~~f~~~~~l~fp--llsDp~~~ly~alGv 171 (252)
|..|.+|..++-+ .+.+.|+++++-...+ .+..+.|+++++++|- -|.|.+.=+-++=|+
T Consensus 9 H~CCAPcs~y~le------~l~~~~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~iegdY~~~~~w~~~vKg~ 81 (204)
T COG1636 9 HSCCAPCSGYVLE------KLRDSGIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINFIEGDYEDLEKWFERVKGM 81 (204)
T ss_pred EeecCCCcHHHHH------HHHhcCcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCeeeecCcccHHHHHHHhhcc
Confidence 7899999877543 3555677776654432 1466789999998873 344444334444443
No 339
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=21.76 E-value=1.6e+02 Score=25.58 Aligned_cols=51 Identities=14% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHHHH
Q 025441 118 YLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSYEA 168 (252)
Q Consensus 118 ~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly~a 168 (252)
...+...++++.|+.++.++-.+...+..+.++.+++.++++.-...+|..
T Consensus 24 ~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~i~~~ 74 (264)
T COG0561 24 ETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDGPLITFNGALIYNG 74 (264)
T ss_pred HHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCccEEEeCCeEEecC
Confidence 333445577899999999988888999999999999988888877777766
No 340
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=21.64 E-value=2.3e+02 Score=23.67 Aligned_cols=36 Identities=14% Similarity=0.154 Sum_probs=28.3
Q ss_pred HHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
..+....+++.|+.+..|+....+.++...+.+++.
T Consensus 92 ~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~ 127 (220)
T TIGR03351 92 AEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT 127 (220)
T ss_pred HHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence 445567778889999999988888888887877765
No 341
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=21.60 E-value=2.7e+02 Score=19.71 Aligned_cols=47 Identities=9% Similarity=0.018 Sum_probs=30.9
Q ss_pred HHHHHHHhHHHHHhCCCEEEEEe-cCCHHHHHHHHHHcCCcceeeecC
Q 025441 115 RADYLAAKKDVMDASGVALVLIG-PGSVEQARTFSEQTKFKGEVYADP 161 (252)
Q Consensus 115 el~~L~~~~~~~~~~Gv~vVaVs-~d~~~~~~~f~~~~~l~fpllsDp 161 (252)
......++..++++.|..+..-. ..+....-+++++.+++|-++...
T Consensus 16 ~~~~a~~la~~Lr~~g~~v~~d~~~~~l~k~i~~a~~~g~~~~iiiG~ 63 (94)
T cd00861 16 QQELAEKLYAELQAAGVDVLLDDRNERPGVKFADADLIGIPYRIVVGK 63 (94)
T ss_pred HHHHHHHHHHHHHHCCCEEEEECCCCCcccchhHHHhcCCCEEEEECC
Confidence 33444456777888898887633 234445556778889999877653
No 342
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=21.60 E-value=2e+02 Score=28.63 Aligned_cols=38 Identities=8% Similarity=0.158 Sum_probs=31.2
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
+...+..+++++.|++++.++.++...++...++.+++
T Consensus 408 ~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~ 445 (562)
T TIGR01511 408 PEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN 445 (562)
T ss_pred HHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence 34455577788899999999999888999999998886
No 343
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=21.58 E-value=1.8e+02 Score=21.20 Aligned_cols=53 Identities=9% Similarity=0.098 Sum_probs=35.9
Q ss_pred HhHHHHHhCCCEEEEEecCCH----HH-HHHHHHHcCCcceeeecCChHHHHHcCCccc
Q 025441 121 AKKDVMDASGVALVLIGPGSV----EQ-ARTFSEQTKFKGEVYADPNHSSYEALSFVSG 174 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~----~~-~~~f~~~~~l~fpllsDp~~~ly~alGv~~~ 174 (252)
+....++...+.+|.+..|-. .. +..+++++++|+ ++.....++-+++|....
T Consensus 22 ~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~-~~~~s~~eLG~~~g~~~~ 79 (95)
T PF01248_consen 22 EVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPY-VFVPSKEELGRACGKKRP 79 (95)
T ss_dssp HHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEE-EEESHHHHHHHHTTSSST
T ss_pred HHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeE-EEECCHHHHHHHHCCCCc
Confidence 334455566677888887643 23 667889988888 444455788888887743
No 344
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=21.44 E-value=2.5e+02 Score=23.23 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCC--c-ceeeecCChHHHHHcC
Q 025441 113 RKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKF--K-GEVYADPNHSSYEALS 170 (252)
Q Consensus 113 ~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l--~-fpllsDp~~~ly~alG 170 (252)
.+.+..+.++...|.+.|..||+-........+++.++.-- . ++||.|-..+..++=.
T Consensus 57 ~e~~rr~~~~A~ll~~~G~ivIva~isp~~~~R~~~R~~~~~~~f~eVyv~~~~e~~~~RD 117 (156)
T PF01583_consen 57 EENIRRIAEVAKLLADQGIIVIVAFISPYREDREWARELIPNERFIEVYVDCPLEVCRKRD 117 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEE----SHHHHHHHHHHHHTTEEEEEEEES-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEeeccCchHHHHHHHHhCCcCceEEEEeCCCHHHHHHhC
Confidence 34666777777888899987777666655666666655322 2 5799998877776554
No 345
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=21.38 E-value=97 Score=26.34 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=28.4
Q ss_pred cCCCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHH-HHHHHHHhHHHHHhCCCEEEEEe-cCCH-HHHHH--
Q 025441 72 KNLLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRK-RADYLAAKKDVMDASGVALVLIG-PGSV-EQART-- 146 (252)
Q Consensus 72 g~~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~-el~~L~~~~~~~~~~Gv~vVaVs-~d~~-~~~~~-- 146 (252)
-+++|...-.+.+.+ +++++-.-. -|++|-| ++.. ++.++ ..++.++|+.+|+|+ ..+. ..+..
T Consensus 60 ~E~l~~~k~l~~~~~--~~~~lt~~D-RVllfs~-----~~~~~e~~~~---a~~L~~~gi~~v~Vs~~~~~~~~l~~~~ 128 (172)
T PF10740_consen 60 AEPLPSAKRLSEDLE--NFDELTETD-RVLLFSP-----FSTDEEAVAL---AKQLIEQGIPFVGVSPNKPDEEDLEDLA 128 (172)
T ss_dssp TT--TTEEE--TT----------TT--EEEEEES------S--HHHHHH---HHHHHHHT--EEEEE-SS---TTGGG-S
T ss_pred CCCCchhhcCccccc--ccccccccc-eEEEEeC-----CCCCHHHHHH---HHHHHHCCCCEEEEEecCCCCCchhhhh
Confidence 456666665543322 222332222 3667744 4444 44443 445678899999999 2221 11111
Q ss_pred --HHHHcCCcceeeecCC
Q 025441 147 --FSEQTKFKGEVYADPN 162 (252)
Q Consensus 147 --f~~~~~l~fpllsDp~ 162 (252)
|.. .+++-|++.|++
T Consensus 129 ~~~Id-l~~~~~LvP~Ed 145 (172)
T PF10740_consen 129 DVHID-LKLPKPLVPTED 145 (172)
T ss_dssp SS-EE-----S-SEE-TT
T ss_pred hheee-cccCCCcccCCC
Confidence 221 245567777766
No 346
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=21.37 E-value=3.4e+02 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCC-HHHHHHHHHHcCCc
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGS-VEQARTFSEQTKFK 154 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~-~~~~~~f~~~~~l~ 154 (252)
+.+.+..+++++.|..++.++..+ ...++.+.+..++.
T Consensus 46 pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~ 84 (170)
T TIGR01668 46 PALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIP 84 (170)
T ss_pred hhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCE
Confidence 455566788889999999999887 45666666766654
No 347
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.17 E-value=88 Score=28.52 Aligned_cols=12 Identities=17% Similarity=0.069 Sum_probs=9.6
Q ss_pred EcCCCCHhhHHH
Q 025441 104 ARHFGCVLCRKR 115 (252)
Q Consensus 104 ~R~~~Cp~C~~e 115 (252)
+++.|||-|-..
T Consensus 6 ~~~~~CpGCg~~ 17 (280)
T PRK11869 6 YDIAWCPGCGNF 17 (280)
T ss_pred CCCCCCcCCCCH
Confidence 578999999643
No 348
>PLN02311 chalcone isomerase
Probab=21.07 E-value=2.1e+02 Score=26.11 Aligned_cols=90 Identities=10% Similarity=0.032 Sum_probs=47.3
Q ss_pred CcccccccccCCceeeecccCCCCceeeccCCCCCCC-ccccCCcccccCCCCCeeeeeeccCCC--CCCCccccCCCCC
Q 025441 1 MAISLSTALSPNTTVRFNRLTNPAPTRILPNQSPLWR-PRHWNKTLKLSPRRPSHVIASAVSESP--PSVSEDTKNLLDT 77 (252)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~g~~apd 77 (252)
||.|++.|-. ++.++--.+.|+-++..+|.-+.+.. |.-.+.-.+--.+-++-+-|+..|..+ -...+.+|-.+|+
T Consensus 1 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ep~TgV~Fp~ 79 (271)
T PLN02311 1 LRMSCRNTDN-AESIYHFPGKSPNRVSVLQTGNTVSDSPNSLLKHRHCNEISRVIVKSAAFSVGSAEYAEETATSVKFQR 79 (271)
T ss_pred CCcccccchh-hhheeecCCCCCCCceEcccCCcccccccccccccccCcccceeeeccccccCcccceecCCcCCcCCc
Confidence 5667777766 66666667888889999998777665 432222222222222122244433333 2234556666666
Q ss_pred cEEecCCCCeEeCC
Q 025441 78 VKVYDVNGNAIPIS 91 (252)
Q Consensus 78 f~L~d~~G~~v~ls 91 (252)
.--....+++..|.
T Consensus 80 ~v~~~~~s~~L~Ln 93 (271)
T PLN02311 80 SLTLPGCSSPLSLL 93 (271)
T ss_pred cccCCCCCCceeEe
Confidence 54222222454444
No 349
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=21.07 E-value=1.4e+02 Score=20.24 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=21.7
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHH-HHHHHhh
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQ-DILKACC 251 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D~~~~~-eIL~al~ 251 (252)
-.|.|+++ |+|......+..+ ++.++ +++++++
T Consensus 14 v~~~i~~~-G~v~~~~i~~ssg-~~~ld~~a~~av~ 47 (74)
T TIGR01352 14 VRFTVDAD-GRVTSVSVLKSSG-DEALDRAALEAVR 47 (74)
T ss_pred EEEEECCC-CCEEEEEEEEcCC-ChhHHHHHHHHHH
Confidence 37899999 6998888765554 34433 4555554
No 350
>PHA00159 endonuclease I
Probab=21.01 E-value=1.4e+02 Score=24.64 Aligned_cols=63 Identities=14% Similarity=0.064 Sum_probs=37.5
Q ss_pred CCCCcEEecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEec------CCHHHHHHH
Q 025441 74 LLDTVKVYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGP------GSVEQARTF 147 (252)
Q Consensus 74 ~apdf~L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~------d~~~~~~~f 147 (252)
-.|||.|. +|..+... +.|-+--|.-+..+++.++++ ++.+|.-+. ++...-.+|
T Consensus 52 YTPDF~Lp--nGiiiEvK--------------G~w~~ddR~K~lli~eQ~P~l---diR~VFs~s~~klyKgSkTtYa~W 112 (148)
T PHA00159 52 YTPDFLLP--NGIIIETK--------------GLWDSDDRKKHLLIREQYPEL---DIRFVFSSSRTKLYKGSPTSYAEW 112 (148)
T ss_pred eCCceecC--CCCEEEec--------------ccCChHHHHHHHHHHHHCCCc---cEEEEEecCCchhhcCCCCcHHHH
Confidence 45777664 35554444 455555565666666666654 455555443 233455689
Q ss_pred HHHcCCcc
Q 025441 148 SEQTKFKG 155 (252)
Q Consensus 148 ~~~~~l~f 155 (252)
++++|+.|
T Consensus 113 c~khG~~~ 120 (148)
T PHA00159 113 CEKHGILF 120 (148)
T ss_pred HHHcCcch
Confidence 99999887
No 351
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=20.88 E-value=1.6e+02 Score=24.37 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCc
Q 025441 119 LAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFK 154 (252)
Q Consensus 119 L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~ 154 (252)
..+....+++.|+.+..+|..+...++...++.++.
T Consensus 90 ~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~ 125 (213)
T TIGR01449 90 VEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA 125 (213)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence 344556677889999999988888888888888874
No 352
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=20.87 E-value=2.8e+02 Score=23.83 Aligned_cols=40 Identities=8% Similarity=0.190 Sum_probs=30.8
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeee
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fplls 159 (252)
.+...++++.|+.++.++.-+...+..+.++.++..++++
T Consensus 21 ~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~~~~I~ 60 (225)
T TIGR02461 21 REALEELKDLGFPIVFVSSKTRAEQEYYREELGVEPPFIV 60 (225)
T ss_pred HHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCCcEEE
Confidence 3445567789999999988888889999999987544444
No 353
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=20.84 E-value=2.8e+02 Score=20.20 Aligned_cols=10 Identities=10% Similarity=-0.250 Sum_probs=4.1
Q ss_pred EEEEEEcCCC
Q 025441 99 AVVAFARHFG 108 (252)
Q Consensus 99 vVLvF~R~~~ 108 (252)
++++-+.+.|
T Consensus 13 ~~vi~~~G~l 22 (108)
T TIGR00377 13 VVIVRLSGEL 22 (108)
T ss_pred EEEEEEeccc
Confidence 3344444444
No 354
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=20.82 E-value=2.2e+02 Score=22.84 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHhCCCEEEEEecC
Q 025441 114 KRADYLAAKKDVMDASGVALVLIGPG 139 (252)
Q Consensus 114 ~el~~L~~~~~~~~~~Gv~vVaVs~d 139 (252)
.|..+|+-+.+.+++.|++++.|.+-
T Consensus 33 pEy~Dl~l~L~~~k~~g~~~lfVi~P 58 (130)
T PF04914_consen 33 PEYDDLQLLLDVCKELGIDVLFVIQP 58 (130)
T ss_dssp THHHHHHHHHHHHHHTT-EEEEEE--
T ss_pred ccHHHHHHHHHHHHHcCCceEEEecC
Confidence 48899999999999999999999864
No 355
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=20.53 E-value=2.7e+02 Score=23.19 Aligned_cols=76 Identities=17% Similarity=0.246 Sum_probs=49.3
Q ss_pred EecCCCCeEeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCH---HHHHHHHHHc-----
Q 025441 80 VYDVNGNAIPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSV---EQARTFSEQT----- 151 (252)
Q Consensus 80 L~d~~G~~v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~---~~~~~f~~~~----- 151 (252)
+.|.|| +++.+|.++. ++-+. =..| .+ +...+++..+.+.|..++-++.-+. ...+.|.++.
T Consensus 3 vsDIDG-TiT~SD~~G~--i~~~~-G~d~---~h---~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L~~~~q~~~ 72 (157)
T PF08235_consen 3 VSDIDG-TITKSDVLGH--ILPIL-GKDW---TH---PGAAELYRKIADNGYKILYLTARPIGQANRTRSWLAQHQQQGH 72 (157)
T ss_pred EEeccC-CcCccchhhh--hhhcc-Cchh---hh---hcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHHHHHHhCCc
Confidence 567887 6777776432 11111 1123 22 3344567788899999999998765 4667888887
Q ss_pred CCc-ceeeecCChHH
Q 025441 152 KFK-GEVYADPNHSS 165 (252)
Q Consensus 152 ~l~-fpllsDp~~~l 165 (252)
++| .|++.-|++-+
T Consensus 73 ~lP~Gpv~~sP~~l~ 87 (157)
T PF08235_consen 73 NLPDGPVLLSPDSLF 87 (157)
T ss_pred cCCCCCEEECCcchh
Confidence 787 68887777644
No 356
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=20.47 E-value=1e+02 Score=25.20 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=24.5
Q ss_pred EEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEE
Q 025441 101 VAFARHFGCVLCRKRADYLAAKKDVMDASGVALV 134 (252)
Q Consensus 101 LvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vV 134 (252)
|.||.-+.||+|..-.+.|.++..++ ..+++|.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~-~~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEY-GGGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHh-CCCceEE
Confidence 45777899999999888888887776 2345443
No 357
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=20.46 E-value=72 Score=29.38 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=16.0
Q ss_pred EcCCCCHhhHHHHHHHHHhHHHHHhCC
Q 025441 104 ARHFGCVLCRKRADYLAAKKDVMDASG 130 (252)
Q Consensus 104 ~R~~~Cp~C~~el~~L~~~~~~~~~~G 130 (252)
+.+.|||-|-... -++.+...+.+.|
T Consensus 16 ~~~~~CpGCg~~~-i~~~i~~al~~l~ 41 (301)
T PRK05778 16 LPTTWCPGCGNFG-ILNAIIQALAELG 41 (301)
T ss_pred CCCCCCCCCCChH-HHHHHHHHHHHhc
Confidence 3678999997543 3444555555543
No 358
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=20.43 E-value=38 Score=27.77 Aligned_cols=17 Identities=29% Similarity=0.358 Sum_probs=14.1
Q ss_pred eccC-CCCCCCccccCCc
Q 025441 28 ILPN-QSPLWRPRHWNKT 44 (252)
Q Consensus 28 ~~~~-~~~~~~~~~~~~~ 44 (252)
|+|- +|.-|||+|.|+-
T Consensus 65 v~kMvmSIGwNP~Y~N~~ 82 (153)
T KOG3110|consen 65 VFKMVMSIGWNPYYKNKK 82 (153)
T ss_pred ceeEEEEcccCcccCCcc
Confidence 6665 8999999998864
No 359
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=20.30 E-value=2.7e+02 Score=23.34 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=29.4
Q ss_pred HHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeee
Q 025441 120 AAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYA 159 (252)
Q Consensus 120 ~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fplls 159 (252)
.+...++++.|..++..+--+...++.+.++.++..++++
T Consensus 24 ~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~~~i~ 63 (215)
T TIGR01487 24 IEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSGPVVA 63 (215)
T ss_pred HHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCCcEEE
Confidence 3445566788998888887777888888888887744443
No 360
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=20.26 E-value=95 Score=27.47 Aligned_cols=56 Identities=13% Similarity=0.247 Sum_probs=33.5
Q ss_pred EeCCCccCCCeEEEEEEcCCCCHhhHHHHHHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHH
Q 025441 88 IPISDLWKDRKAVVAFARHFGCVLCRKRADYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQ 150 (252)
Q Consensus 88 v~ls~l~~~~~vVLvF~R~~~Cp~C~~el~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~ 150 (252)
-.-.+++++++++|+-..+ ..-..++...+-++..|..++.++++..+.+-++...
T Consensus 115 ~a~~~lf~g~~~il~p~~~-------~~~~~~~~~~~l~~~~Ga~~~~~~~eeHD~~~A~vsh 170 (258)
T PF02153_consen 115 AADADLFEGRNWILCPGED-------TDPEALELVEELWEALGARVVEMDAEEHDRIMAYVSH 170 (258)
T ss_dssp G-TTTTTTTSEEEEEECTT-------S-HHHHHHHHHHHHHCT-EEEE--HHHHHHHHHHHTH
T ss_pred hhcccccCCCeEEEeCCCC-------ChHHHHHHHHHHHHHCCCEEEEcCHHHHHHHHHHHHH
Confidence 3455777778777754322 2233444555556789999999988877777777654
No 361
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=20.14 E-value=2.9e+02 Score=24.08 Aligned_cols=46 Identities=4% Similarity=0.014 Sum_probs=34.0
Q ss_pred HhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCChHHH
Q 025441 121 AKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNHSSY 166 (252)
Q Consensus 121 ~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~~ly 166 (252)
+...+++++|+.++..+--+...++.+.++.+++.++++.-...+|
T Consensus 26 ~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~I~~NGa~I~ 71 (272)
T PRK15126 26 STLARLRERDITLTFATGRHVLEMQHILGALSLDAYLITGNGTRVH 71 (272)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCCCcEEecCCcEEE
Confidence 3345567899998888888888889999998888666655444444
No 362
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=20.11 E-value=2e+02 Score=19.71 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=24.1
Q ss_pred eEEEEeCCCCeEEEEEeCCCCCCCCCHHHHHHHhh
Q 025441 217 GIIVAGPGKSNISYIHRDKEAGDDPDIQDILKACC 251 (252)
Q Consensus 217 g~fVid~ggg~I~~~h~~~~~~D~~~~~eIL~al~ 251 (252)
-.|.||++ |+|.-..+....+...=-++++++++
T Consensus 20 v~~~I~~~-G~v~~~~v~~s~~~~~l~~~a~~~v~ 53 (79)
T PF03544_consen 20 VEFTIDPD-GRVSDVRVIQSSGPPILDEAALRAVK 53 (79)
T ss_dssp EEEEEETT-TEEEEEEEEEESSSSCSHHHHHHHHC
T ss_pred EEEEEeCC-CCEEEEEEEEccCHHHHHHHHHHHHH
Confidence 47899999 69998888766664434456666665
No 363
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=20.04 E-value=2.8e+02 Score=20.78 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHhHHHHHhCCCEEEEEecCCHHHHHHHHHHcCCcceeeecCCh
Q 025441 117 DYLAAKKDVMDASGVALVLIGPGSVEQARTFSEQTKFKGEVYADPNH 163 (252)
Q Consensus 117 ~~L~~~~~~~~~~Gv~vVaVs~d~~~~~~~f~~~~~l~fpllsDp~~ 163 (252)
.++.+..+..++.|+.+|+|.......+.+.. ...+.+-.+++.
T Consensus 67 ~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~a---d~~l~~~~~~~~ 110 (131)
T PF01380_consen 67 RELIELLRFAKERGAPVILITSNSESPLARLA---DIVLYIPTGEES 110 (131)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSTTSHHHHHS---SEEEEEESSCGS
T ss_pred hhhhhhhHHHHhcCCeEEEEeCCCCCchhhhC---CEEEEecCCCcc
Confidence 44445455677899999999976555554443 345555555443
Done!