Query 025444
Match_columns 252
No_of_seqs 360 out of 1532
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 05:54:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025444.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025444hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.7 1.6E-18 3.5E-23 150.6 6.1 195 1-195 128-362 (483)
2 KOG4341 F-box protein containi 99.7 8.2E-18 1.8E-22 146.2 5.1 169 5-173 158-351 (483)
3 KOG2120 SCF ubiquitin ligase, 99.6 1.2E-15 2.6E-20 128.0 6.6 156 11-174 185-344 (419)
4 KOG2120 SCF ubiquitin ligase, 99.5 1.7E-14 3.8E-19 121.1 7.7 158 7-175 206-370 (419)
5 KOG1947 Leucine rich repeat pr 99.5 4.8E-14 1E-18 128.9 9.4 156 5-160 237-418 (482)
6 KOG1947 Leucine rich repeat pr 99.5 1.9E-13 4E-18 125.0 9.4 158 11-175 161-328 (482)
7 cd00116 LRR_RI Leucine-rich re 99.4 2.1E-11 4.5E-16 105.9 14.3 67 10-78 80-154 (319)
8 cd00116 LRR_RI Leucine-rich re 99.3 4.2E-11 9.1E-16 104.0 15.8 158 11-174 108-284 (319)
9 KOG1909 Ran GTPase-activating 99.3 6.2E-12 1.3E-16 107.6 9.5 143 9-156 155-311 (382)
10 KOG1909 Ran GTPase-activating 99.1 6.9E-11 1.5E-15 101.3 6.5 75 100-174 192-276 (382)
11 KOG3207 Beta-tubulin folding c 99.0 1.3E-10 2.8E-15 102.2 3.4 149 6-155 141-313 (505)
12 KOG3665 ZYG-1-like serine/thre 98.9 4.5E-09 9.7E-14 100.3 9.3 158 7-176 118-283 (699)
13 KOG3207 Beta-tubulin folding c 98.9 8.6E-10 1.9E-14 97.1 2.3 154 11-174 121-277 (505)
14 PF14580 LRR_9: Leucine-rich r 98.8 8.2E-10 1.8E-14 88.0 1.0 128 34-175 18-147 (175)
15 PF14580 LRR_9: Leucine-rich r 98.8 2.2E-09 4.7E-14 85.6 1.1 130 10-153 18-150 (175)
16 PLN00113 leucine-rich repeat r 98.5 1.3E-07 2.7E-12 94.4 6.9 158 11-175 69-243 (968)
17 PLN00113 leucine-rich repeat r 98.5 1.3E-07 2.9E-12 94.2 6.0 60 10-70 139-198 (968)
18 KOG3665 ZYG-1-like serine/thre 98.5 3.3E-07 7.2E-12 87.6 7.3 138 5-154 142-286 (699)
19 KOG4194 Membrane glycoprotein 98.4 3.9E-07 8.5E-12 83.5 4.4 159 11-177 78-254 (873)
20 KOG3864 Uncharacterized conser 98.3 6.7E-07 1.5E-11 71.8 4.1 104 62-175 103-211 (221)
21 KOG2739 Leucine-rich acidic nu 98.3 8E-08 1.7E-12 79.8 -1.2 111 55-176 38-151 (260)
22 KOG3864 Uncharacterized conser 98.3 1.9E-06 4.1E-11 69.3 6.5 58 33-91 123-181 (221)
23 KOG0618 Serine/threonine phosp 98.2 5.5E-07 1.2E-11 86.1 2.1 134 13-162 361-495 (1081)
24 PLN03210 Resistant to P. syrin 98.2 1.3E-06 2.8E-11 88.7 4.7 38 116-156 800-838 (1153)
25 KOG4194 Membrane glycoprotein 98.2 9E-07 2E-11 81.1 3.0 63 107-173 382-444 (873)
26 COG5238 RNA1 Ran GTPase-activa 98.2 9.6E-06 2.1E-10 68.2 8.6 164 10-174 57-278 (388)
27 COG5238 RNA1 Ran GTPase-activa 98.1 2.7E-05 5.9E-10 65.5 9.5 144 10-154 29-225 (388)
28 KOG2982 Uncharacterized conser 98.0 1.1E-05 2.3E-10 68.7 5.9 169 4-175 64-256 (418)
29 PLN03210 Resistant to P. syrin 98.0 4.7E-06 1E-10 84.7 3.5 41 115-157 866-907 (1153)
30 KOG0444 Cytoskeletal regulator 97.8 8.1E-06 1.8E-10 75.7 1.2 119 33-159 243-378 (1255)
31 KOG2982 Uncharacterized conser 97.8 5.3E-06 1.1E-10 70.6 -0.2 107 13-128 47-156 (418)
32 KOG2123 Uncharacterized conser 97.7 4.4E-05 9.5E-10 64.5 4.8 101 35-149 19-123 (388)
33 smart00367 LRR_CC Leucine-rich 97.5 0.00011 2.5E-09 39.3 3.0 25 59-83 1-25 (26)
34 KOG1259 Nischarin, modulator o 97.3 0.00016 3.4E-09 61.9 2.2 55 12-70 285-339 (490)
35 smart00367 LRR_CC Leucine-rich 97.2 0.00039 8.6E-09 37.1 2.6 24 117-140 1-25 (26)
36 KOG2739 Leucine-rich acidic nu 97.1 2.8E-05 6.1E-10 64.8 -3.4 135 12-156 19-156 (260)
37 KOG0618 Serine/threonine phosp 97.1 0.00016 3.5E-09 69.7 1.1 124 35-174 359-482 (1081)
38 KOG0444 Cytoskeletal regulator 97.1 0.00012 2.6E-09 68.3 -0.4 37 116-154 243-279 (1255)
39 PF12799 LRR_4: Leucine Rich r 97.0 0.00067 1.5E-08 41.2 2.8 35 118-154 1-35 (44)
40 PLN03150 hypothetical protein; 96.9 0.0012 2.5E-08 63.1 4.7 106 37-153 420-525 (623)
41 KOG2123 Uncharacterized conser 96.8 0.00025 5.5E-09 60.0 -0.4 103 59-175 18-124 (388)
42 PF12799 LRR_4: Leucine Rich r 96.7 0.0018 3.9E-08 39.3 3.0 37 35-74 1-37 (44)
43 PF13855 LRR_8: Leucine rich r 96.7 7.8E-05 1.7E-09 48.6 -3.4 38 116-154 23-60 (61)
44 KOG1859 Leucine-rich repeat pr 96.7 0.00013 2.8E-09 68.9 -3.2 106 32-154 184-290 (1096)
45 KOG0472 Leucine-rich repeat pr 96.6 0.0015 3.2E-08 58.1 3.1 111 31-156 431-541 (565)
46 PF13516 LRR_6: Leucine Rich r 96.6 0.002 4.3E-08 33.6 2.3 23 117-139 1-23 (24)
47 PF13855 LRR_8: Leucine rich r 96.6 0.00011 2.5E-09 47.8 -3.1 59 11-70 1-59 (61)
48 PRK15387 E3 ubiquitin-protein 96.4 0.002 4.3E-08 62.7 2.5 13 119-131 343-355 (788)
49 KOG4308 LRR-containing protein 96.3 0.0019 4.2E-08 59.6 1.7 60 98-157 209-276 (478)
50 PLN03150 hypothetical protein; 96.3 0.0053 1.1E-07 58.7 4.7 107 13-129 420-526 (623)
51 KOG4658 Apoptotic ATPase [Sign 96.3 0.0053 1.1E-07 60.8 4.6 108 32-152 568-677 (889)
52 KOG0617 Ras suppressor protein 96.2 0.00027 5.8E-09 55.9 -3.5 35 33-69 54-88 (264)
53 KOG1644 U2-associated snRNP A' 96.1 0.004 8.6E-08 50.5 2.3 104 36-152 43-149 (233)
54 KOG4237 Extracellular matrix p 96.0 0.0052 1.1E-07 54.5 3.1 62 115-177 271-355 (498)
55 PRK15387 E3 ubiquitin-protein 96.0 0.0055 1.2E-07 59.7 3.5 103 11-132 201-316 (788)
56 PF13516 LRR_6: Leucine Rich r 96.0 0.0055 1.2E-07 31.9 2.0 22 60-82 2-23 (24)
57 KOG4308 LRR-containing protein 96.0 0.0017 3.6E-08 60.0 -0.2 95 37-136 89-190 (478)
58 KOG1259 Nischarin, modulator o 95.9 0.0033 7.3E-08 54.0 1.3 105 10-131 306-412 (490)
59 KOG3763 mRNA export factor TAP 95.9 0.012 2.7E-07 54.1 4.8 33 117-149 269-307 (585)
60 KOG1644 U2-associated snRNP A' 95.8 0.0085 1.8E-07 48.6 3.0 104 59-174 41-146 (233)
61 smart00368 LRR_RI Leucine rich 95.4 0.021 4.5E-07 31.0 2.8 25 118-142 2-26 (28)
62 PRK15370 E3 ubiquitin-protein 95.4 0.043 9.4E-07 53.5 6.9 33 118-154 346-378 (754)
63 KOG4658 Apoptotic ATPase [Sign 95.4 0.019 4.1E-07 57.0 4.4 131 32-177 542-674 (889)
64 PRK15386 type III secretion pr 95.1 0.014 3.1E-07 52.6 2.3 56 10-73 51-107 (426)
65 KOG3735 Tropomodulin and leiom 94.9 0.072 1.6E-06 46.3 6.0 93 50-146 188-283 (353)
66 COG4886 Leucine-rich repeat (L 94.8 0.015 3.2E-07 52.2 1.9 133 12-155 141-289 (394)
67 smart00368 LRR_RI Leucine rich 94.6 0.055 1.2E-06 29.3 3.2 23 35-57 2-24 (28)
68 KOG1859 Leucine-rich repeat pr 94.1 0.018 3.9E-07 55.0 0.7 23 33-55 107-130 (1096)
69 COG4886 Leucine-rich repeat (L 94.1 0.046 1E-06 49.0 3.3 136 11-156 116-268 (394)
70 KOG0617 Ras suppressor protein 93.7 0.005 1.1E-07 48.9 -3.1 108 34-157 32-164 (264)
71 KOG0531 Protein phosphatase 1, 93.7 0.017 3.7E-07 52.4 -0.3 106 33-156 93-199 (414)
72 PRK15370 E3 ubiquitin-protein 93.0 0.31 6.8E-06 47.7 7.2 19 116-134 413-431 (754)
73 KOG4579 Leucine-rich repeat (L 93.0 0.035 7.6E-07 42.5 0.5 108 36-156 28-136 (177)
74 KOG0531 Protein phosphatase 1, 92.1 0.034 7.3E-07 50.5 -0.6 105 10-132 94-200 (414)
75 KOG4579 Leucine-rich repeat (L 91.7 0.056 1.2E-06 41.5 0.2 92 50-156 14-113 (177)
76 PF13504 LRR_7: Leucine rich r 91.0 0.19 4.1E-06 23.8 1.6 12 119-130 2-13 (17)
77 KOG0472 Leucine-rich repeat pr 88.8 0.45 9.7E-06 42.8 3.4 107 8-131 432-541 (565)
78 PRK15386 type III secretion pr 87.9 0.92 2E-05 41.2 4.8 50 10-69 71-121 (426)
79 KOG4237 Extracellular matrix p 86.4 0.34 7.4E-06 43.4 1.2 37 115-152 319-355 (498)
80 PF10446 DUF2457: Protein of u 85.0 0.5 1.1E-05 42.6 1.6 7 169-175 37-43 (458)
81 PF13306 LRR_5: Leucine rich r 84.4 0.18 3.8E-06 37.3 -1.3 51 116-171 79-129 (129)
82 PF07723 LRR_2: Leucine Rich R 84.0 1.2 2.6E-05 23.5 2.3 25 119-143 1-26 (26)
83 KOG3763 mRNA export factor TAP 83.6 1.3 2.7E-05 41.4 3.6 75 99-175 224-308 (585)
84 PF00560 LRR_1: Leucine Rich R 83.6 0.74 1.6E-05 23.1 1.3 9 145-153 2-10 (22)
85 KOG3735 Tropomodulin and leiom 76.5 7 0.00015 34.3 5.6 86 24-117 187-279 (353)
86 smart00369 LRR_TYP Leucine-ric 72.5 3 6.6E-05 21.5 1.6 14 118-131 2-15 (26)
87 smart00370 LRR Leucine-rich re 72.5 3 6.6E-05 21.5 1.6 14 118-131 2-15 (26)
88 smart00365 LRR_SD22 Leucine-ri 64.8 5.4 0.00012 21.1 1.6 14 118-131 2-15 (26)
89 KOG0532 Leucine-rich repeat (L 59.8 4.9 0.00011 37.9 1.4 32 36-71 144-177 (722)
90 KOG1824 TATA-binding protein-i 49.1 2.8 6E-05 41.6 -2.1 17 149-165 259-275 (1233)
91 KOG1832 HIV-1 Vpr-binding prot 42.1 17 0.00038 36.2 2.0 13 116-128 1298-1310(1516)
92 smart00364 LRR_BAC Leucine-ric 39.7 17 0.00037 19.2 0.9 14 118-131 2-15 (26)
93 PHA02811 putative host range p 36.7 14 0.00031 29.5 0.5 8 167-174 142-149 (197)
94 PF08004 DUF1699: Protein of u 33.3 1.2E+02 0.0027 22.7 4.9 38 8-45 14-51 (131)
95 PF07735 FBA_2: F-box associat 32.9 93 0.002 20.0 4.0 29 121-149 35-68 (70)
96 smart00446 LRRcap occurring C- 31.7 35 0.00076 18.1 1.3 16 137-152 7-22 (26)
97 PF11332 DUF3134: Protein of u 31.1 23 0.00049 23.9 0.7 11 205-215 57-67 (73)
98 KOG1189 Global transcriptional 28.8 23 0.0005 34.6 0.6 9 179-187 861-869 (960)
99 KOG1832 HIV-1 Vpr-binding prot 26.5 34 0.00073 34.3 1.2 8 139-146 1296-1303(1516)
100 PF03382 DUF285: Mycoplasma pr 26.3 46 0.001 24.4 1.8 35 115-151 58-93 (120)
101 PF08387 FBD: FBD; InterPro: 21.1 1E+02 0.0022 18.8 2.3 33 11-43 14-50 (51)
102 PF11702 DUF3295: Protein of u 20.0 46 0.001 31.0 0.8 7 217-223 310-316 (507)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.74 E-value=1.6e-18 Score=150.56 Aligned_cols=195 Identities=23% Similarity=0.329 Sum_probs=156.7
Q ss_pred CHHHHHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHH
Q 025444 1 MVEMLITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPA 77 (252)
Q Consensus 1 ~l~~~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~ 77 (252)
|+...+.|+.+.|+.|++.|| ..+..+..++.+||+++.|++.+| +||+..+..+++.|++|++|++..|..+|+..
T Consensus 128 VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~ 207 (483)
T KOG4341|consen 128 VVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVS 207 (483)
T ss_pred ceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHH
Confidence 456678888899999999998 558889999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHhhCchhhhhcccCee-------------------cccCCCCc-CcHHHHHHHhcCCCCcEEEecCcc-cCHHHHH
Q 025444 78 LEAIGKHCKLLVVLCRNMHP-------------------LDTADKLS-QDDEANAIASTMPKLKRLEMAYHV-ISTEIVL 136 (252)
Q Consensus 78 l~~l~~~~~~L~~L~~~l~~-------------------l~l~~~~~-~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~ 136 (252)
++.+++.||+|+.|+++..+ +...||.- ..+.+..++..++-+.++++..|. |||+++.
T Consensus 208 Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 208 LKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred HHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 99999999999999664322 22334443 334445566678888888888888 9999999
Q ss_pred HHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc-------------Cccccccc--CCccccccCCCC
Q 025444 137 KILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP-------------FVMDYYEI--NDWDDCSDYSDG 195 (252)
Q Consensus 137 ~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~-------------~~~~~~~~--~~~~~c~~~~d~ 195 (252)
.+..+|..|+.|+.++|..++... ..+.+.|++|++|.. +.++|+.+ .+.++|....|.
T Consensus 288 ~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~ 362 (483)
T KOG4341|consen 288 LIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG 362 (483)
T ss_pred HHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence 999999999999999998885444 577889999999842 23344444 355777777764
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.71 E-value=8.2e-18 Score=146.20 Aligned_cols=169 Identities=22% Similarity=0.348 Sum_probs=117.9
Q ss_pred HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444 5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI 81 (252)
Q Consensus 5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l 81 (252)
...+.|+++++|.+.+| ++|..+..+++.|++|+.|+|..| .+|+..++.++..|++|+.|++++|+.|+..+++++
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~ 237 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL 237 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence 45677999999999998 789999999999999999999998 999999999999999999999999999999999999
Q ss_pred HhhCchhhhhccc-------------------CeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHh
Q 025444 82 GKHCKLLVVLCRN-------------------MHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS 140 (252)
Q Consensus 82 ~~~~~~L~~L~~~-------------------l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~ 140 (252)
.++|+.++.+... +-.+++..|. ++|.++..++..|..|+.|..++|. +++..+.++.+
T Consensus 238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~ 317 (483)
T KOG4341|consen 238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ 317 (483)
T ss_pred hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence 9999988777321 0111222332 4455555555455555555555544 55555555555
Q ss_pred cCCCCCEEeccCCCCccCCh-HHHHhcCCCCcee
Q 025444 141 SCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVL 173 (252)
Q Consensus 141 ~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L 173 (252)
+|++|+.|-|++|.+.+..+ ..+...|+.|+.+
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l 351 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERL 351 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhh
Confidence 55555555555555443333 3334444444443
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=1.2e-15 Score=127.97 Aligned_cols=156 Identities=24% Similarity=0.237 Sum_probs=107.5
Q ss_pred CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.+|++|+++.. ++-..+..|..+|.+|+.|+|.+..+.|.....++ +..+|+.|+|+.|+.+|..++..+..+|+.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 56888888885 67777888888999999999999988888877776 56889999999999999999999989999888
Q ss_pred hhcccCeecccCCCCcCcHHHH-HHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444 90 VLCRNMHPLDTADKLSQDDEAN-AIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 166 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~ 166 (252)
.| +++.|....+.+. +++.--++|+.|+|+|+. +.+..+..+.+.||+|..|||+.|..++.+-....-+
T Consensus 264 ~L-------NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k 336 (419)
T KOG2120|consen 264 EL-------NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK 336 (419)
T ss_pred hc-------CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh
Confidence 88 4444544333333 333334666666666665 5555555555666666666666666554422222334
Q ss_pred CCCCceec
Q 025444 167 FPNLKVLG 174 (252)
Q Consensus 167 ~~~L~~L~ 174 (252)
++.|++|.
T Consensus 337 f~~L~~lS 344 (419)
T KOG2120|consen 337 FNYLQHLS 344 (419)
T ss_pred cchheeee
Confidence 55555554
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.7e-14 Score=121.08 Aligned_cols=158 Identities=20% Similarity=0.317 Sum_probs=124.9
Q ss_pred HHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444 7 TRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH 84 (252)
Q Consensus 7 ~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~ 84 (252)
-..|.+|+.|++.|. ..|.+...|+ ...+|+.|+|+.| +++..++..+...|+.|..|+|+.|...++..-.+++.-
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hi 284 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHI 284 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhh
Confidence 345899999999997 5666666677 5779999999999 999999999999999999999999988777754455555
Q ss_pred CchhhhhcccCeecccCCCC--cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChH
Q 025444 85 CKLLVVLCRNMHPLDTADKL--SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 161 (252)
Q Consensus 85 ~~~L~~L~~~l~~l~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~ 161 (252)
-++|++| +++|+. .....+..++++||+|.+|+|+.|. +++..+.+ +-+++.|++|.|+.|..+ ..+
T Consensus 285 se~l~~L-------NlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i--~p~ 354 (419)
T KOG2120|consen 285 SETLTQL-------NLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFKFNYLQHLSLSRCYDI--IPE 354 (419)
T ss_pred chhhhhh-------hhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHH-HHhcchheeeehhhhcCC--ChH
Confidence 6778887 445542 4455777888899999999999999 88854444 447999999999999888 553
Q ss_pred HH--HhcCCCCceecc
Q 025444 162 FM--KGNFPNLKVLGP 175 (252)
Q Consensus 162 ~l--~~~~~~L~~L~~ 175 (252)
.+ ....|.|.+|..
T Consensus 355 ~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 355 TLLELNSKPSLVYLDV 370 (419)
T ss_pred HeeeeccCcceEEEEe
Confidence 33 456677777764
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.51 E-value=4.8e-14 Score=128.87 Aligned_cols=156 Identities=31% Similarity=0.372 Sum_probs=123.4
Q ss_pred HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444 5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI 81 (252)
Q Consensus 5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l 81 (252)
.+...|++|+.|+++++ ++|..+..++..|++|+.|++.+| .+++.++..++.+|++|++|+|++|..+++.++..+
T Consensus 237 ~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~ 316 (482)
T KOG1947|consen 237 LLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL 316 (482)
T ss_pred hhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH
Confidence 45667788999999887 578889999999999999998888 589999999999999999999999999999999999
Q ss_pred HhhCchhhhhcccC-------eecccCCCCc-C-cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCC-------
Q 025444 82 GKHCKLLVVLCRNM-------HPLDTADKLS-Q-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL------- 145 (252)
Q Consensus 82 ~~~~~~L~~L~~~l-------~~l~l~~~~~-~-~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L------- 145 (252)
+..|++|+.|.+.. ..+.+.++.. . +.....++..|++|+++.|.++.+++.++..++.+||+|
T Consensus 317 ~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~~~l~~~ 396 (482)
T KOG1947|consen 317 LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLTESLELR 396 (482)
T ss_pred HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccchHHHHH
Confidence 99999988875432 2233333332 2 355667778899999999998887777777778888877
Q ss_pred -------CEEeccCCCCccCCh
Q 025444 146 -------EFLDLRGCWDVKLDD 160 (252)
Q Consensus 146 -------~~LdL~~C~~i~~~~ 160 (252)
+.|+++.|..++...
T Consensus 397 ~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 397 LCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred hccCCccceEecccCccccccc
Confidence 677777777775444
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=124.95 Aligned_cols=158 Identities=26% Similarity=0.328 Sum_probs=94.9
Q ss_pred CCccEEEecCC---CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccC-CCCCCHHH--HHHHHh
Q 025444 11 GSLRKLCVSGL---HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGK 83 (252)
Q Consensus 11 ~~L~~L~l~~~---~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~-c~~i~~~~--l~~l~~ 83 (252)
..++.+....+ .....+..+...+++|+.|.+.+| .+++.++..++..+++|+.|++++ |..++..+ ...++.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 33444444443 223445555555677777777776 666666666666677777777766 33333322 344555
Q ss_pred hCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh-
Q 025444 84 HCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD- 160 (252)
Q Consensus 84 ~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~- 160 (252)
.|++|+.| ++..+. +++.++.+++..||+|++|.+.+|. +|+.++..+++.||+|++|+|++|..++..+
T Consensus 241 ~~~~L~~l-------~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l 313 (482)
T KOG1947|consen 241 ICRKLKSL-------DLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGL 313 (482)
T ss_pred hcCCcCcc-------chhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHH
Confidence 56666555 333444 6666667777667777777766666 6777777777777777777777777664433
Q ss_pred HHHHhcCCCCceecc
Q 025444 161 KFMKGNFPNLKVLGP 175 (252)
Q Consensus 161 ~~l~~~~~~L~~L~~ 175 (252)
..+...|++++.|+.
T Consensus 314 ~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 314 EALLKNCPNLRELKL 328 (482)
T ss_pred HHHHHhCcchhhhhh
Confidence 333455666666654
No 7
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.35 E-value=2.1e-11 Score=105.92 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCccEEEecCCCC----HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHH---hcC-CCccEEeccCCCCCCHHHH
Q 025444 10 SGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRL-SAVTFLDLSYCSKIGAPAL 78 (252)
Q Consensus 10 ~~~L~~L~l~~~~~----d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~-~~L~~L~Ls~c~~i~~~~l 78 (252)
+++|+.|+++++.- ...+..+... ++|++|++++|.+++.++..+. ..+ ++|+.|++++|. ++..++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~ 154 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASC 154 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHH
Confidence 55666666666521 1222223333 4566666666666554433322 233 566666666653 443333
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.34 E-value=4.2e-11 Score=103.97 Aligned_cols=158 Identities=22% Similarity=0.210 Sum_probs=108.0
Q ss_pred CCccEEEecCC-CCHHHHHHHH---HhC-CCCcEEEccCCCCCHHHH---HHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIA---ENA-GSLQTLRLPRSEMSDSIV---AQIAGRLSAVTFLDLSYCSKIGAPALEAIG 82 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~---~~~-~~L~~L~L~~~~i~~~~l---~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~ 82 (252)
++|++|+++++ .++..+..+. ..+ ++|++|.|.+|.++..+. ......+++|++|++++| .+++.++..++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHH
Confidence 67999999987 4444444332 345 899999999998885443 334456788999999996 57777777776
Q ss_pred hhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhcC----CCCCEEeccCCCC
Q 025444 83 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWD 155 (252)
Q Consensus 83 ~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~~----~~L~~LdL~~C~~ 155 (252)
..++.+..| +.++++++.+.+.++..++ ..+++|++|++++|.+++.++..++..+ ++|++|++++|.
T Consensus 187 ~~l~~~~~L----~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~- 261 (319)
T cd00116 187 EGLKANCNL----EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND- 261 (319)
T ss_pred HHHHhCCCC----CEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC-
Confidence 655522222 4446777777666655443 4578999999999999988888877764 799999999984
Q ss_pred ccCCh-HHHHhcC---CCCceec
Q 025444 156 VKLDD-KFMKGNF---PNLKVLG 174 (252)
Q Consensus 156 i~~~~-~~l~~~~---~~L~~L~ 174 (252)
++..+ ..+.+.+ ++|+.+.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~ 284 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELD 284 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEE
Confidence 43223 3343444 4455553
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=6.2e-12 Score=107.65 Aligned_cols=143 Identities=21% Similarity=0.204 Sum_probs=103.7
Q ss_pred cCCCccEEEecCCC----CHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHH---HhcCCCccEEeccCCCCCCHHHHHHH
Q 025444 9 SSGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAI 81 (252)
Q Consensus 9 ~~~~L~~L~l~~~~----~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~Ls~c~~i~~~~l~~l 81 (252)
+.++||.+...+.. +...+..+.+.+|+|+.++++.+.|..+|+..+ +.+||+|+.|+|.++ .+|..+-.++
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DN-tft~egs~~L 233 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDN-TFTLEGSVAL 233 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccc-hhhhHHHHHH
Confidence 34677777776641 233455566777888888888888877766444 345888888888885 4777787888
Q ss_pred HhhCchhhhhcccCeecccCCCCcCcHHHHHHH----hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444 82 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA----STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW 154 (252)
Q Consensus 82 ~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~----~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~ 154 (252)
++.+|.++.| +.+++++|.+.+.++.+++ +..|+|+.|.+.||.||-++...+.. ..|.|++|+|++|.
T Consensus 234 akaL~s~~~L----~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 234 AKALSSWPHL----RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNR 309 (382)
T ss_pred HHHhcccchh----eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccc
Confidence 8877666655 6678888888888877665 34688899999998888777655443 56888899998886
Q ss_pred Cc
Q 025444 155 DV 156 (252)
Q Consensus 155 ~i 156 (252)
.-
T Consensus 310 l~ 311 (382)
T KOG1909|consen 310 LG 311 (382)
T ss_pred cc
Confidence 53
No 10
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.15 E-value=6.9e-11 Score=101.29 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=50.7
Q ss_pred cCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCCCccCCh----HHHHhcCCC
Q 025444 100 TADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDD----KFMKGNFPN 169 (252)
Q Consensus 100 l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~~i~~~~----~~l~~~~~~ 169 (252)
+....+...++.+++ .+||+|+.|+|..|.+|.++-.++++ .+|+|+.|+++.|.--+... +.+.+..|.
T Consensus 192 ~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~ 271 (382)
T KOG1909|consen 192 LSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPS 271 (382)
T ss_pred EecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCC
Confidence 333444444443333 46899999999999988887666655 67788999999985443222 345667888
Q ss_pred Cceec
Q 025444 170 LKVLG 174 (252)
Q Consensus 170 L~~L~ 174 (252)
|++|.
T Consensus 272 L~vl~ 276 (382)
T KOG1909|consen 272 LEVLE 276 (382)
T ss_pred Cceec
Confidence 88886
No 11
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-10 Score=102.20 Aligned_cols=149 Identities=23% Similarity=0.216 Sum_probs=106.7
Q ss_pred HHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh
Q 025444 6 ITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK 83 (252)
Q Consensus 6 i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~ 83 (252)
+...|++++.|+|++. -+-..+..|+..+|+|+.|+|+.|++....-......+++|+.|.|+.|. ++.+.+..+..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CG-ls~k~V~~~~~ 219 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCG-LSWKDVQWILL 219 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCC-CCHHHHHHHHH
Confidence 4566899999999985 33455778889999999999999844321111111247889999999985 78999999999
Q ss_pred hCchhhhhccc-----------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH-----Hhc
Q 025444 84 HCKLLVVLCRN-----------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI-----LSS 141 (252)
Q Consensus 84 ~~~~L~~L~~~-----------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i-----~~~ 141 (252)
.||+|+.|-+. ++.+++++....+.........+|+|+.|+++.|.|+....... ...
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~ 299 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHT 299 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcc
Confidence 99999998542 23456666665555444444478888999888888776544322 457
Q ss_pred CCCCCEEeccCCCC
Q 025444 142 CALLEFLDLRGCWD 155 (252)
Q Consensus 142 ~~~L~~LdL~~C~~ 155 (252)
+|+|++|++.....
T Consensus 300 f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 300 FPKLEYLNISENNI 313 (505)
T ss_pred cccceeeecccCcc
Confidence 88999999887544
No 12
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.92 E-value=4.5e-09 Score=100.25 Aligned_cols=158 Identities=22% Similarity=0.262 Sum_probs=111.5
Q ss_pred HHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444 7 TRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH 84 (252)
Q Consensus 7 ~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~ 84 (252)
+.+..+|++|+++|- .+..-...++..+|+|++|.+.+-.+....+..+..++|+|..||||++ +++.- ..| .+
T Consensus 118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl--~GI-S~ 193 (699)
T KOG3665|consen 118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGT-NISNL--SGI-SR 193 (699)
T ss_pred HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCC-CccCc--HHH-hc
Confidence 446689999999994 3455678899999999999999987777779999999999999999994 56542 223 35
Q ss_pred CchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHH-HHHHHHh---cCCCCCEEeccCCCCccC-
Q 025444 85 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTE-IVLKILS---SCALLEFLDLRGCWDVKL- 158 (252)
Q Consensus 85 ~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~-~l~~i~~---~~~~L~~LdL~~C~~i~~- 158 (252)
+++|+.|.+ +.+.+. ....+..+. .+++|+.|++|... .+.. .+...++ .+|+|+.||.|+. .++.
T Consensus 194 LknLq~L~m--rnLe~e----~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~ 265 (699)
T KOG3665|consen 194 LKNLQVLSM--RNLEFE----SYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEE 265 (699)
T ss_pred cccHHHHhc--cCCCCC----chhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHH
Confidence 677877743 222221 124455665 79999999999877 3332 2333332 7899999999973 3311
Q ss_pred ChHHHHhcCCCCceeccC
Q 025444 159 DDKFMKGNFPNLKVLGPF 176 (252)
Q Consensus 159 ~~~~l~~~~~~L~~L~~~ 176 (252)
.-+.+.+..|+|+.+...
T Consensus 266 ~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 266 ILEELLNSHPNLQQIAAL 283 (699)
T ss_pred HHHHHHHhCccHhhhhhh
Confidence 114556778888888754
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8.6e-10 Score=97.14 Aligned_cols=154 Identities=19% Similarity=0.157 Sum_probs=74.0
Q ss_pred CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.+|+++.|.++ +.+......++.||+++.|+|+.|-++. ..+..++..+|+|+.|+|+.+. +....-.......++|
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHL 199 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhh
Confidence 45555555554 2222222344556666666666653333 4455555666666666665532 1110001111133344
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
++| .+.+|..+...+..++..+|+|+.|.|.+|. +...... .+....|+.|||++...++...-.....+
T Consensus 200 K~L-------~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~~~l 270 (505)
T KOG3207|consen 200 KQL-------VLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKVGTL 270 (505)
T ss_pred heE-------EeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCcccccccccccccc
Confidence 444 4556666666666666677777777777663 2221111 01234566666666555543322223344
Q ss_pred CCCceec
Q 025444 168 PNLKVLG 174 (252)
Q Consensus 168 ~~L~~L~ 174 (252)
|.|+.|.
T Consensus 271 ~~L~~Ln 277 (505)
T KOG3207|consen 271 PGLNQLN 277 (505)
T ss_pred cchhhhh
Confidence 5555543
No 14
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.83 E-value=8.2e-10 Score=88.00 Aligned_cols=128 Identities=27% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
+.++++|+|.++.|+. +..+...+.+|+.|++++|. |+. +..+. .+++|+.| .+++..+..-+ ..+
T Consensus 18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~N~-I~~--l~~l~-~L~~L~~L-------~L~~N~I~~i~-~~l 83 (175)
T PF14580_consen 18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSNNQ-ITK--LEGLP-GLPRLKTL-------DLSNNRISSIS-EGL 83 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS---S----TT-----TT--EE-------E--SS---S-C-HHH
T ss_pred cccccccccccccccc--ccchhhhhcCCCEEECCCCC-Ccc--ccCcc-Chhhhhhc-------ccCCCCCCccc-cch
Confidence 3356777777776654 34443345667777777642 321 11111 13334433 34444333321 123
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 175 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~ 175 (252)
...+|+|++|.+++|+|++-.-...+..||+|+.|++.+++-..... ..+...+|+|+.|..
T Consensus 84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 34578888888888876554333445578888888888766554333 455677888888764
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.76 E-value=2.2e-09 Score=85.58 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=52.1
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
+-++++|++.+..- ..+..+...+.+|+.|+|++|.|+. +..+ ..+++|+.|+++++ .|+.-+ ..+...+|+|+
T Consensus 18 ~~~~~~L~L~~n~I-~~Ie~L~~~l~~L~~L~Ls~N~I~~--l~~l-~~L~~L~~L~L~~N-~I~~i~-~~l~~~lp~L~ 91 (175)
T PF14580_consen 18 PVKLRELNLRGNQI-STIENLGATLDKLEVLDLSNNQITK--LEGL-PGLPRLKTLDLSNN-RISSIS-EGLDKNLPNLQ 91 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--SS----S-C-HHHHHH-TT--
T ss_pred cccccccccccccc-ccccchhhhhcCCCEEECCCCCCcc--ccCc-cChhhhhhcccCCC-CCCccc-cchHHhCCcCC
Confidence 45789999998621 1244555567899999999998876 2222 46899999999995 565421 23445688998
Q ss_pred hhcccCeecccCCCCcCcH-HHHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEeccCC
Q 025444 90 VLCRNMHPLDTADKLSQDD-EANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL~~C 153 (252)
.|.++ +..+.+- .+..+ ..+|+|+.|+|.+|+++.. .-..++..+|+|+.||-...
T Consensus 92 ~L~L~-------~N~I~~l~~l~~L-~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 92 ELYLS-------NNKISDLNELEPL-SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp EEE-T-------TS---SCCCCGGG-GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred EEECc-------CCcCCChHHhHHH-HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 88544 3333321 12333 3799999999999997654 23456779999999987654
No 16
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.55 E-value=1.3e-07 Score=94.38 Aligned_cols=158 Identities=17% Similarity=0.124 Sum_probs=70.1
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
++++.|++++..-...+......+++|+.|+|++|.++...-..+...+++|++|++++|. ++...- ...+++|+.
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~~~~p---~~~l~~L~~ 144 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNN-FTGSIP---RGSIPNLET 144 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCc-cccccC---ccccCCCCE
Confidence 3566666665411111222233566677777766655432222333455666666666542 221000 012333333
Q ss_pred hcccC-----------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 91 LCRNM-----------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 91 L~~~l-----------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
|.+.. +.++++++.+.......+. .+++|++|+|++|.++.. +...+.++++|+.|+|++|
T Consensus 145 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT-NLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred EECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhh-hCcCCCeeeccCCCCcCc-CChHHcCcCCccEEECcCC
Confidence 32211 1223333332222222232 566666666666664432 1222345666677776665
Q ss_pred CCccCChHHHHhcCCCCceecc
Q 025444 154 WDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 154 ~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.........+ ..+++|++|..
T Consensus 223 ~l~~~~p~~l-~~l~~L~~L~L 243 (968)
T PLN00113 223 NLSGEIPYEI-GGLTSLNHLDL 243 (968)
T ss_pred ccCCcCChhH-hcCCCCCEEEC
Confidence 4321122222 34566666643
No 17
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=98.51 E-value=1.3e-07 Score=94.15 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=26.3
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
.++|++|+++++.-...+......+++|+.|+|++|.++...-.. +.++++|++|++++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n 198 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN 198 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC
Confidence 345666666654111111222234556666666655443211111 134555555555554
No 18
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=87.62 Aligned_cols=138 Identities=25% Similarity=0.268 Sum_probs=101.2
Q ss_pred HHHHcCCCccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 025444 5 LITRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG 82 (252)
Q Consensus 5 ~i~~~~~~L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~ 82 (252)
.+....|+|++|.+++. ..+. +..+..++|||..|++++++|++- .-.+++++|+.|.+.+-..-+...+..+.
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq~L~mrnLe~e~~~~l~~LF 217 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQVLSMRNLEFESYQDLIDLF 217 (699)
T ss_pred HHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc---HHHhccccHHHHhccCCCCCchhhHHHHh
Confidence 46677899999999995 3344 778888999999999999988872 22278899999999885544445555554
Q ss_pred hhCchhhhhcccCeecccCCCCcCcHH--H---HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 83 KHCKLLVVLCRNMHPLDTADKLSQDDE--A---NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 83 ~~~~~L~~L~~~l~~l~l~~~~~~~~~--~---~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
. +++|+.|.++ .....+.. + ......+|+||.|+.+++.++...+..++..-|+|+.+.+-+|.
T Consensus 218 ~-L~~L~vLDIS-------~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 218 N-LKKLRVLDIS-------RDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred c-ccCCCeeecc-------ccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 3 6667666544 32222211 1 12234589999999999999999999999999999888766543
No 19
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.35 E-value=3.9e-07 Score=83.45 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=98.4
Q ss_pred CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
..-+.|++++. .++-.+..+ .+.|||++++|..|.++. +..+.....+|+.|+|.++ .|+.-.-+.++ ..|.|+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f-~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~-~l~alr 152 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFF-YNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELS-ALPALR 152 (873)
T ss_pred cceeeeeccccccccCcHHHH-hcCCcceeeeeccchhhh--cccccccccceeEEeeecc-ccccccHHHHH-hHhhhh
Confidence 34456777775 333223333 478899999998886653 4444455677888888874 44432222222 234467
Q ss_pred hhcc-----------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444 90 VLCR-----------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 152 (252)
Q Consensus 90 ~L~~-----------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~ 152 (252)
+|.+ ++..+++++..+++-+.-.++ ++.+|..|.|+.|+||.-- ..+.+++|+|++|+|..
T Consensus 153 slDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~-~lnsL~tlkLsrNrittLp-~r~Fk~L~~L~~LdLnr 230 (873)
T KOG4194|consen 153 SLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFD-SLNSLLTLKLSRNRITTLP-QRSFKRLPKLESLDLNR 230 (873)
T ss_pred hhhhhhchhhcccCCCCCCCCCceEEeecccccccccccccc-ccchheeeecccCcccccC-HHHhhhcchhhhhhccc
Confidence 6643 344556666666666655554 5668888888888877643 34456789999999987
Q ss_pred CCCccCChHHHHhcCCCCceeccCc
Q 025444 153 CWDVKLDDKFMKGNFPNLKVLGPFV 177 (252)
Q Consensus 153 C~~i~~~~~~l~~~~~~L~~L~~~~ 177 (252)
. .+....-.-++..++|+.|+...
T Consensus 231 N-~irive~ltFqgL~Sl~nlklqr 254 (873)
T KOG4194|consen 231 N-RIRIVEGLTFQGLPSLQNLKLQR 254 (873)
T ss_pred c-ceeeehhhhhcCchhhhhhhhhh
Confidence 3 55444333356677777776433
No 20
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=6.7e-07 Score=71.79 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=65.8
Q ss_pred ccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHH
Q 025444 62 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKIL 139 (252)
Q Consensus 62 L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~ 139 (252)
++.++-+++ .|...|+..+. .++.++.| .+..|. +.|..+..|+.-.|+|+.|+|++|. ||+.++.-+.
T Consensus 103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l-------~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~ 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSL-------SLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL 173 (221)
T ss_pred EEEEecCCc-hHHHHHHHHHh-ccchhhhh-------eeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH
Confidence 445555552 35555555443 24444444 223333 2334444555556888999999999 9999887665
Q ss_pred hcCCCCCEEeccCCCCccCCh---HHHHhcCCCCceecc
Q 025444 140 SSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKVLGP 175 (252)
Q Consensus 140 ~~~~~L~~LdL~~C~~i~~~~---~~l~~~~~~L~~L~~ 175 (252)
.+++|+.|.|++-+.|...+ ..+....|++++...
T Consensus 174 -~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 174 -KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred -HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 68999999988877664333 456777888888765
No 21
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.30 E-value=8e-08 Score=79.80 Aligned_cols=111 Identities=22% Similarity=0.217 Sum_probs=74.1
Q ss_pred HHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcccCHH
Q 025444 55 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTE 133 (252)
Q Consensus 55 l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~it~~ 133 (252)
+...+..|+.|.+.++...|-.. +. .+|+|++|-+ +... ....++..++..+|+|++|++++|+|.+.
T Consensus 38 l~d~~~~le~ls~~n~gltt~~~---~P-~Lp~LkkL~l-------sdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 38 LTDEFVELELLSVINVGLTTLTN---FP-KLPKLKKLEL-------SDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred ccccccchhhhhhhccceeeccc---CC-Ccchhhhhcc-------cCCcccccccceehhhhCCceeEEeecCCccccc
Confidence 33445666666666654322111 11 2455666633 3321 23445556677889999999999998875
Q ss_pred HHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceeccC
Q 025444 134 IVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGPF 176 (252)
Q Consensus 134 ~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~~ 176 (252)
.-..-++.+++|.+|++.+|...+..+ +.++...|+|++|...
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 555566788999999999998776565 5677888999998753
No 22
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.29 E-value=1.9e-06 Score=69.26 Aligned_cols=58 Identities=28% Similarity=0.350 Sum_probs=33.3
Q ss_pred hCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444 33 NAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 91 (252)
Q Consensus 33 ~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L 91 (252)
.++.|+.|.+.+| .+.|.++..+..-.++|+.|+|++|+.||+.++..+.+ +++|+.|
T Consensus 123 ~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L 181 (221)
T KOG3864|consen 123 DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRL 181 (221)
T ss_pred ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHH
Confidence 3555555666666 55556665555555666666666666666666555543 4555555
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.21 E-value=5.5e-07 Score=86.13 Aligned_cols=134 Identities=22% Similarity=0.310 Sum_probs=86.7
Q ss_pred ccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444 13 LRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 91 (252)
Q Consensus 13 L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L 91 (252)
|+.|.+.+. .+|..+..+. .+++||.|+|+.|+++.---.. ..+++.|++|+||++ +++.-. ..+ ..|+.|++|
T Consensus 361 Lq~LylanN~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~-~~kle~LeeL~LSGN-kL~~Lp-~tv-a~~~~L~tL 435 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASK-LRKLEELEELNLSGN-KLTTLP-DTV-ANLGRLHTL 435 (1081)
T ss_pred HHHHHHhcCcccccchhhhc-cccceeeeeecccccccCCHHH-HhchHHhHHHhcccc-hhhhhh-HHH-HhhhhhHHH
Confidence 444555443 4566555544 7889999999998555311111 256788999999994 454322 223 357788888
Q ss_pred cccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHH
Q 025444 92 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF 162 (252)
Q Consensus 92 ~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~ 162 (252)
..+.+.+.. .-.++ .+|.|+.++|+.|.++...+...+. .|+|++|||+|......+-+.
T Consensus 436 ~ahsN~l~~---------fPe~~-~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~~ 495 (1081)
T KOG0618|consen 436 RAHSNQLLS---------FPELA-QLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHKT 495 (1081)
T ss_pred hhcCCceee---------chhhh-hcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchhh
Confidence 665333210 11333 7899999999999999887776654 389999999998765333333
No 24
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.20 E-value=1.3e-06 Score=88.67 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=18.1
Q ss_pred cCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 116 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 116 ~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
++++|++|+|++|. ++. +...+ ++++|+.|+|++|..+
T Consensus 800 ~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 800 NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCcc
Confidence 45555555555554 331 11111 3455666666665444
No 25
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.19 E-value=9e-07 Score=81.14 Aligned_cols=63 Identities=24% Similarity=0.278 Sum_probs=41.4
Q ss_pred cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCcee
Q 025444 107 DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 173 (252)
Q Consensus 107 ~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L 173 (252)
.+++.++. ++|+|+.|.+.||+|....-.++ .+++.|+.|||.+....+.....+ +.. +||.|
T Consensus 382 EDaa~~f~-gl~~LrkL~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~L 444 (873)
T KOG4194|consen 382 EDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAF-EPM-ELKEL 444 (873)
T ss_pred ecchhhhc-cchhhhheeecCceeeecchhhh-ccCcccceecCCCCcceeeccccc-ccc-hhhhh
Confidence 34444554 79999999999999665544444 489999999999865444343333 222 45555
No 26
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.18 E-value=9.6e-06 Score=68.22 Aligned_cols=164 Identities=19% Similarity=0.180 Sum_probs=97.9
Q ss_pred CCCccEEEecCCCC----HHH---HHH---HHHhCCCCcEEEccCCCCC---HHHHHHHHhcCCCccEEeccCCCCCCHH
Q 025444 10 SGSLRKLCVSGLHN----DMM---FSL---IAENAGSLQTLRLPRSEMS---DSIVAQIAGRLSAVTFLDLSYCSKIGAP 76 (252)
Q Consensus 10 ~~~L~~L~l~~~~~----d~~---l~~---i~~~~~~L~~L~L~~~~i~---~~~l~~l~~~~~~L~~L~Ls~c~~i~~~ 76 (252)
-.+|+..+++...+ |.. +.. ....||+|+.++|+.|-+. .+-+..++++...|++|.+++| .++..
T Consensus 57 ~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~Nn-GlGp~ 135 (388)
T COG5238 57 VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNN-GLGPI 135 (388)
T ss_pred hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecC-CCCcc
Confidence 45677777776422 222 222 2236888888888887433 2456666677788888888876 35554
Q ss_pred HHHHHHhhCch------------hhhhcc---------------------cCeecccCCCCcCcHHHHHHH----hcCCC
Q 025444 77 ALEAIGKHCKL------------LVVLCR---------------------NMHPLDTADKLSQDDEANAIA----STMPK 119 (252)
Q Consensus 77 ~l~~l~~~~~~------------L~~L~~---------------------~l~~l~l~~~~~~~~~~~~l~----~~~~~ 119 (252)
+-..|++.+.+ |+.... +++.+.+....+...++..++ ..+++
T Consensus 136 aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~ 215 (388)
T COG5238 136 AGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHS 215 (388)
T ss_pred chhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCc
Confidence 44444433222 222211 223333444455566554433 46899
Q ss_pred CcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCCCccCChHHH-----HhcCCCCceec
Q 025444 120 LKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFM-----KGNFPNLKVLG 174 (252)
Q Consensus 120 L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~~i~~~~~~l-----~~~~~~L~~L~ 174 (252)
|+.|+|..|.+|..+-..++. ..+.|+.|.+..|-..+...+.+ ....|+|..|+
T Consensus 216 LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~ 278 (388)
T COG5238 216 LEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLP 278 (388)
T ss_pred ceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccc
Confidence 999999999988777555544 56788999999996554333433 24456777665
No 27
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2.7e-05 Score=65.53 Aligned_cols=144 Identities=18% Similarity=0.138 Sum_probs=87.0
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHh---CCCCcEEEccCC---CCCHHH------HHHHHhcCCCccEEeccCCCCCCHH
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAEN---AGSLQTLRLPRS---EMSDSI------VAQIAGRLSAVTFLDLSYCSKIGAP 76 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~---~~~L~~L~L~~~---~i~~~~------l~~l~~~~~~L~~L~Ls~c~~i~~~ 76 (252)
...++++++||. ++......++.. -++|+..+++.. +..++. +.+..-+||+|+..+||.+ .++..
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN-Afg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN-AFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc-ccCcc
Confidence 567899999996 555556665543 457777777765 333332 2233457999999999995 56554
Q ss_pred HHH---HHHhhCchhhhhcccCeec------------------------------ccCCCCcCcHHH---HHHHhcCCCC
Q 025444 77 ALE---AIGKHCKLLVVLCRNMHPL------------------------------DTADKLSQDDEA---NAIASTMPKL 120 (252)
Q Consensus 77 ~l~---~l~~~~~~L~~L~~~l~~l------------------------------~l~~~~~~~~~~---~~l~~~~~~L 120 (252)
... -+..+-..|++|.++.+.+ ..+....-.... .+..+.-.+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 433 3334556688886543322 111111111111 1222223578
Q ss_pred cEEEecCcccCHHHHHHHH----hcCCCCCEEeccCCC
Q 025444 121 KRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCW 154 (252)
Q Consensus 121 ~~L~L~~~~it~~~l~~i~----~~~~~L~~LdL~~C~ 154 (252)
+++.+.+|.|..+++..++ ..|++|+.|||....
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt 225 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT 225 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccc
Confidence 8888888888888765543 378899999998753
No 28
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.02 E-value=1.1e-05 Score=68.75 Aligned_cols=169 Identities=18% Similarity=0.140 Sum_probs=80.2
Q ss_pred HHHHHcCCCccEEEecCC-CC-HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 025444 4 MLITRSSGSLRKLCVSGL-HN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI 81 (252)
Q Consensus 4 ~~i~~~~~~L~~L~l~~~-~~-d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l 81 (252)
+.++.+|..++++++.+. ++ -+-+..|.++.|.|+.|+|+.|.++.. +..+.....+|+.|-|.+ +.+.+..+..+
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~ 141 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSS 141 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhh
Confidence 344555666666666553 22 233555556666666666665544431 111111234566666655 55666666666
Q ss_pred HhhCchhhhhcccCe---ecccC-----------------CCCcC-cHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHh
Q 025444 82 GKHCKLLVVLCRNMH---PLDTA-----------------DKLSQ-DDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 140 (252)
Q Consensus 82 ~~~~~~L~~L~~~l~---~l~l~-----------------~~~~~-~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~ 140 (252)
....|.++.|.++.+ .+++. +|... ......+.+.+|++..+-+..|++.+..-..-..
T Consensus 142 l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 142 LDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred hhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCC
Confidence 666776666644333 12211 11110 1112233344566666666666555544444444
Q ss_pred cCCCCCEEeccCCCCcc-CChHHHHhcCCCCceecc
Q 025444 141 SCALLEFLDLRGCWDVK-LDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 141 ~~~~L~~LdL~~C~~i~-~~~~~l~~~~~~L~~L~~ 175 (252)
.+|.+-.|+|+.. ++. ...-.-...+|+|..||.
T Consensus 222 ~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv 256 (418)
T KOG2982|consen 222 PFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRV 256 (418)
T ss_pred CCCcchhhhhccc-ccccHHHHHHHcCCchhheeec
Confidence 4455555555442 221 111111345666666653
No 29
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.97 E-value=4.7e-06 Score=84.67 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=30.0
Q ss_pred hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCcc
Q 025444 115 STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVK 157 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~ 157 (252)
..+++|+.|+|++|+ ++. +......+++|+.|++++|..++
T Consensus 866 ~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 368889999998877 664 33334567888888888887664
No 30
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.77 E-value=8.1e-06 Score=75.74 Aligned_cols=119 Identities=20% Similarity=0.193 Sum_probs=70.4
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH----
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD---- 108 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~---- 108 (252)
..++|+.|+|++|.|+. +..-.....+|++|++|.+ .++ .+....-.+++|++|-.+.+.+++.|....-.
T Consensus 243 ~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrN-QLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~ 317 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRN-QLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ 317 (1255)
T ss_pred hhhhhheeccCcCceee--eeccHHHHhhhhhhccccc-hhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhh
Confidence 34566666666665554 1111233566667777663 232 12221223566888877777777766542211
Q ss_pred -HHHHHH-----------hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCC
Q 025444 109 -EANAIA-----------STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLD 159 (252)
Q Consensus 109 -~~~~l~-----------~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~ 159 (252)
.+...+ .+|++|+.|.|+.|+ ||-- .-+.-++.|+.|||+..+++-+.
T Consensus 318 Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLP---eaIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 318 LEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLP---EAIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred hHHHHhhccccccCchhhhhhHHHHHhcccccceeech---hhhhhcCCcceeeccCCcCccCC
Confidence 111111 358999999999999 7733 33345689999999988877543
No 31
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=5.3e-06 Score=70.57 Aligned_cols=107 Identities=25% Similarity=0.298 Sum_probs=68.5
Q ss_pred ccEEEecCC--CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 13 LRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 13 L~~L~l~~~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
+.-|.+.++ .+...+..++..+..++.|+|.+|.|++ ..+.++.+++|.|+.|+|+.+. ++. .+..+.....+|+
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s-~I~~lp~p~~nl~ 124 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSS-DIKSLPLPLKNLR 124 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCC-ccccCcccccceE
Confidence 334555555 3444567788889999999999999988 6788888999999999998753 321 2222222334555
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCc
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH 128 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 128 (252)
.|-+| |....-.........+|+++.|+++.|
T Consensus 125 ~lVLN-------gT~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 125 VLVLN-------GTGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEEEc-------CCCCChhhhhhhhhcchhhhhhhhccc
Confidence 55444 333333334444456666677666665
No 32
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.73 E-value=4.4e-05 Score=64.53 Aligned_cols=101 Identities=20% Similarity=0.245 Sum_probs=51.5
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
.+.++|+..||.++|- .+..++|.|+.|.||-+ +|+ .+..+ ..|++|+.|- +..+.+.+-.-.+..
T Consensus 19 ~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElY-------LRkN~I~sldEL~YL 84 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELY-------LRKNCIESLDELEYL 84 (388)
T ss_pred HHhhhhcccCCCccHH---HHHHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHH-------HHhcccccHHHHHHH
Confidence 3566677777777662 23356677777777663 343 23333 2466666652 222223333333333
Q ss_pred hcCCCCcEEEecCcc-cCHH---HHHHHHhcCCCCCEEe
Q 025444 115 STMPKLKRLEMAYHV-ISTE---IVLKILSSCALLEFLD 149 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~-it~~---~l~~i~~~~~~L~~Ld 149 (252)
+++|+|+.|-|..|. .... --..+++.+|+|++||
T Consensus 85 knlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 85 KNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 466666666666655 2111 1234455566666664
No 33
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.53 E-value=0.00011 Score=39.30 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=19.6
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHh
Q 025444 59 LSAVTFLDLSYCSKIGAPALEAIGK 83 (252)
Q Consensus 59 ~~~L~~L~Ls~c~~i~~~~l~~l~~ 83 (252)
||+|++|+|++|..||+.++.+|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5778888888888888888877764
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.25 E-value=0.00016 Score=61.89 Aligned_cols=55 Identities=25% Similarity=0.271 Sum_probs=30.6
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 12 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 12 ~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
.|++|++|+..- ..+..-.+-.|.++.|+++.|+|+. +..+ +.+++|+.|+||++
T Consensus 285 ~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~--v~nL-a~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 285 ELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRT--VQNL-AELPQLQLLDLSGN 339 (490)
T ss_pred hhhhccccccch-hhhhhhhhhccceeEEeccccceee--ehhh-hhcccceEeecccc
Confidence 466666666411 1122222345677777777776654 2222 45677777777774
No 35
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.18 E-value=0.00039 Score=37.15 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=18.1
Q ss_pred CCCCcEEEecCcc-cCHHHHHHHHh
Q 025444 117 MPKLKRLEMAYHV-ISTEIVLKILS 140 (252)
Q Consensus 117 ~~~L~~L~L~~~~-it~~~l~~i~~ 140 (252)
||+|++|+|++|. ||+.++..+.+
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5778888888887 88888777653
No 36
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=2.8e-05 Score=64.81 Aligned_cols=135 Identities=15% Similarity=0.127 Sum_probs=83.1
Q ss_pred CccEEEecCCCC-HHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 12 SLRKLCVSGLHN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 12 ~L~~L~l~~~~~-d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
..+.+.+..|.+ ...+..+...+.+|+.|++.++.++. +..+ ..+|+|+.|.+|.++.-...++..++..||+|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccC-CCcchhhhhcccCCcccccccceehhhhCCceeE
Confidence 344455554422 22244445556677777777775443 2222 4578999999998644445677888888899988
Q ss_pred hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEeccCCCCc
Q 025444 91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
|.++ +..+.+-.-..=.+.+++|..|++..|..+.. -=..+..-.|+|++||-..+...
T Consensus 96 l~ls-------~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 96 LNLS-------GNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred Eeec-------CCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCc
Confidence 8444 43333311111124678899999999985431 22355667899999987665443
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.12 E-value=0.00016 Score=69.75 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=78.7
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
+.|+.|.+.+|.+++..+..+ ..+++|+.|+|+++ .++...-..+ ++++.|+.| +++|...+.- ...++
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsyN-rL~~fpas~~-~kle~LeeL-------~LSGNkL~~L-p~tva 427 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSYN-RLNSFPASKL-RKLEELEEL-------NLSGNKLTTL-PDTVA 427 (1081)
T ss_pred HHHHHHHHhcCcccccchhhh-ccccceeeeeeccc-ccccCCHHHH-hchHHhHHH-------hcccchhhhh-hHHHH
Confidence 457778888899999888777 47899999999996 3332222222 234556666 5555443322 23444
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.|+.|++|...+|.|.. +..++ .+++|+.+||+. .+++...-....-.|+||+|.
T Consensus 428 -~~~~L~tL~ahsN~l~~--fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLd 482 (1081)
T KOG0618|consen 428 -NLGRLHTLRAHSNQLLS--FPELA-QLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLD 482 (1081)
T ss_pred -hhhhhHHHhhcCCceee--chhhh-hcCcceEEeccc-chhhhhhhhhhCCCcccceee
Confidence 78999999998888542 23444 689999999984 566322211111126888874
No 38
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=97.06 E-value=0.00012 Score=68.26 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.6
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
++++|+.|+|++|.||.-.+. .....+|+.|++|...
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQ 279 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQ 279 (1255)
T ss_pred hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccch
Confidence 568899999999998864332 2356788999998854
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.02 E-value=0.00067 Score=41.23 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=27.4
Q ss_pred CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
++|++|++++|.|++ +...+.+|++|+.|+++++.
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence 579999999999885 44446799999999999984
No 40
>PLN03150 hypothetical protein; Provisional
Probab=96.89 E-value=0.0012 Score=63.14 Aligned_cols=106 Identities=13% Similarity=0.110 Sum_probs=47.9
Q ss_pred CcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc
Q 025444 37 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 116 (252)
Q Consensus 37 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~ 116 (252)
++.|+|+++.++...-. -+..+++|+.|+|++| .++...-..+ ..+++|+.| +++++.+.......+. .
T Consensus 420 v~~L~L~~n~L~g~ip~-~i~~L~~L~~L~Ls~N-~l~g~iP~~~-~~l~~L~~L-------dLs~N~lsg~iP~~l~-~ 488 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPN-DISKLRHLQSINLSGN-SIRGNIPPSL-GSITSLEVL-------DLSYNSFNGSIPESLG-Q 488 (623)
T ss_pred EEEEECCCCCccccCCH-HHhCCCCCCEEECCCC-cccCcCChHH-hCCCCCCEE-------ECCCCCCCCCCchHHh-c
Confidence 55666666654432111 2245666777777664 2332111112 234445444 3333333222222232 5
Q ss_pred CCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 117 ~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
+++|++|+|++|.++...-..+.....++..+++.++
T Consensus 489 L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 489 LTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 6667777777666553322222222334555555543
No 41
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00025 Score=60.02 Aligned_cols=103 Identities=23% Similarity=0.178 Sum_probs=74.4
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH
Q 025444 59 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 138 (252)
Q Consensus 59 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i 138 (252)
+.+.+.|+.-+|. +++ ..|.+..|.|+.|.++.+.+. -.+-...|.+|++|.|+.|.|.+-.-..-
T Consensus 18 l~~vkKLNcwg~~-L~D---Isic~kMp~lEVLsLSvNkIs----------sL~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDD---ISICEKMPLLEVLSLSVNKIS----------SLAPLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccH---HHHHHhcccceeEEeeccccc----------cchhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4678899999974 665 456677888888866544321 11222589999999999999888776777
Q ss_pred HhcCCCCCEEeccCCCCccCCh----HHHHhcCCCCceecc
Q 025444 139 LSSCALLEFLDLRGCWDVKLDD----KFMKGNFPNLKVLGP 175 (252)
Q Consensus 139 ~~~~~~L~~LdL~~C~~i~~~~----~~l~~~~~~L~~L~~ 175 (252)
++++|+|+.|-|...+-....+ ..+.+..|+||.|..
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8899999999987644333233 355678999999963
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.72 E-value=0.0018 Score=39.30 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=26.9
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCC
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG 74 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~ 74 (252)
++|++|+|++|+|++ +...+.++++|+.|++++| .|+
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N-~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN-PIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS-CCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC-CCC
Confidence 578999999998886 4444578899999999986 454
No 43
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.71 E-value=7.8e-05 Score=48.59 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=24.6
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
.+++|++|+|++|.|+... ...+.++++|++|++++|.
T Consensus 23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence 5677777777777765321 2234577777777777763
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.70 E-value=0.00013 Score=68.91 Aligned_cols=106 Identities=25% Similarity=0.307 Sum_probs=66.5
Q ss_pred HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh-hCchhhhhcccCeecccCCCCcCcHHH
Q 025444 32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~-~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
.-.+.|+.|+|+.|++++.. .+..|++|++|+|+++ .++ .+..++. .|+ |..|. ++++.++ .+
T Consensus 184 qll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN-~L~--~vp~l~~~gc~-L~~L~-------lrnN~l~--tL 247 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYN-CLR--HVPQLSMVGCK-LQLLN-------LRNNALT--TL 247 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH---HHHhcccccccccccc-hhc--cccccchhhhh-heeee-------ecccHHH--hh
Confidence 34567899999998887633 3367899999999885 221 1112221 232 44442 2222211 12
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
..| .++++|+.|++++|-|.+..-...+..+..|+.|.|.|.+
T Consensus 248 ~gi-e~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 248 RGI-ENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhH-HhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 223 3788999999999987776666666677788888888754
No 45
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.65 E-value=0.0015 Score=58.10 Aligned_cols=111 Identities=19% Similarity=0.208 Sum_probs=65.2
Q ss_pred HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 31 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 31 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
...+++|.-|+|++|.+.+--.. ...+..|+.|+|+.+. + ..+.+.|-.++.+ +.+-.+...+..-..
T Consensus 431 l~~l~kLt~L~L~NN~Ln~LP~e--~~~lv~Lq~LnlS~Nr-F-----r~lP~~~y~lq~l----Etllas~nqi~~vd~ 498 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLNDLPEE--MGSLVRLQTLNLSFNR-F-----RMLPECLYELQTL----ETLLASNNQIGSVDP 498 (565)
T ss_pred HHhhhcceeeecccchhhhcchh--hhhhhhhheecccccc-c-----ccchHHHhhHHHH----HHHHhccccccccCh
Confidence 34567777888877754441111 1223448888887752 2 3344444334433 111122222222112
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
..+ .+|.+|..|+|..|.+. .+..++.+|.+|++|++.|.+.-
T Consensus 499 ~~l-~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 499 SGL-KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred HHh-hhhhhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 223 37899999999998865 46778889999999999997544
No 46
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.61 E-value=0.002 Score=33.58 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=17.7
Q ss_pred CCCCcEEEecCcccCHHHHHHHH
Q 025444 117 MPKLKRLEMAYHVISTEIVLKIL 139 (252)
Q Consensus 117 ~~~L~~L~L~~~~it~~~l~~i~ 139 (252)
+++|++|+|++|.|+++++..++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhC
Confidence 57899999999999999988875
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.61 E-value=0.00011 Score=47.79 Aligned_cols=59 Identities=22% Similarity=0.187 Sum_probs=35.6
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|+.|+++++.-...-......+++|++|+|++|.++.-.- .....+++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 467888888761111111233467788888888876653111 12356788888888875
No 48
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.39 E-value=0.002 Score=62.71 Aligned_cols=13 Identities=15% Similarity=0.322 Sum_probs=6.9
Q ss_pred CCcEEEecCcccC
Q 025444 119 KLKRLEMAYHVIS 131 (252)
Q Consensus 119 ~L~~L~L~~~~it 131 (252)
+|++|+|++|+|+
T Consensus 343 ~Lq~LdLS~N~Ls 355 (788)
T PRK15387 343 GLQELSVSDNQLA 355 (788)
T ss_pred ccceEecCCCccC
Confidence 4555555555555
No 49
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.27 E-value=0.0019 Score=59.55 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=31.9
Q ss_pred cccCCCCcCcHHHHHHHhc---CCC-CcEEEecCcccCHHHHHHHHhcC----CCCCEEeccCCCCcc
Q 025444 98 LDTADKLSQDDEANAIAST---MPK-LKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRGCWDVK 157 (252)
Q Consensus 98 l~l~~~~~~~~~~~~l~~~---~~~-L~~L~L~~~~it~~~l~~i~~~~----~~L~~LdL~~C~~i~ 157 (252)
+.+..|.++......++.. .++ ++.|++..|.+.+.++..+...+ +.++.++++.|....
T Consensus 209 L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~ 276 (478)
T KOG4308|consen 209 LKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITE 276 (478)
T ss_pred HhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccc
Confidence 3444555554444433322 233 55566666666666666555533 344677777765443
No 50
>PLN03150 hypothetical protein; Provisional
Probab=96.27 E-value=0.0053 Score=58.74 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=65.4
Q ss_pred ccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhc
Q 025444 13 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC 92 (252)
Q Consensus 13 L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~ 92 (252)
++.|+|+++.-...+..-...+++|+.|+|++|.++.. +......+++|+.|+|++| .++...-..++ .+++|+.|.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N-~lsg~iP~~l~-~L~~L~~L~ 496 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYN-SFNGSIPESLG-QLTSLRILN 496 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCC-CCCCCCchHHh-cCCCCCEEE
Confidence 67788877521112222334789999999999977642 2333467899999999996 45543333343 467777774
Q ss_pred ccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc
Q 025444 93 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV 129 (252)
Q Consensus 93 ~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 129 (252)
+ +++.........+.....++..+++.+|.
T Consensus 497 L-------s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 497 L-------NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred C-------cCCcccccCChHHhhccccCceEEecCCc
Confidence 4 44433322223333334567788888876
No 51
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.25 E-value=0.0053 Score=60.78 Aligned_cols=108 Identities=21% Similarity=0.211 Sum_probs=49.1
Q ss_pred HhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 32 ENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 32 ~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
.+.|.|+.|+|++| .++ .+...+..+-+|+.|++++ +.|+ .+..++.+|+.| ..+++..+.... ..
T Consensus 568 ~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~-t~I~-----~LP~~l~~Lk~L----~~Lnl~~~~~l~-~~ 634 (889)
T KOG4658|consen 568 RSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSD-TGIS-----HLPSGLGNLKKL----IYLNLEVTGRLE-SI 634 (889)
T ss_pred hhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccC-CCcc-----ccchHHHHHHhh----heeccccccccc-cc
Confidence 45666666666665 322 1333334555666666666 3333 333333333333 222222211100 01
Q ss_pred HHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccC
Q 025444 111 NAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRG 152 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~ 152 (252)
..+...+++||+|.+.+.. -.+.....-+.++.+|+.+.+..
T Consensus 635 ~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 635 PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 2233457777777777654 22222233334555555555543
No 52
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.24 E-value=0.00027 Score=55.92 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=22.3
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccC
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY 69 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~ 69 (252)
...+|+.|++.+++|+. +..-++++|+|+.|+++-
T Consensus 54 ~l~nlevln~~nnqie~--lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 54 ELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGM 88 (264)
T ss_pred Hhhhhhhhhcccchhhh--cChhhhhchhhhheecch
Confidence 45677777777776654 333335667777777764
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.06 E-value=0.004 Score=50.49 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=56.5
Q ss_pred CCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH-HHHHHH
Q 025444 36 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-EANAIA 114 (252)
Q Consensus 36 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~-~~~~l~ 114 (252)
+...++|.++.+.. .....+++.|..|.++++ .|+.-. ..+....|+|+.|. +.+..+..- .+.-++
T Consensus 43 ~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~-------LtnNsi~~l~dl~pLa 110 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLI-------LTNNSIQELGDLDPLA 110 (233)
T ss_pred ccceecccccchhh---cccCCCccccceEEecCC-cceeec-cchhhhccccceEE-------ecCcchhhhhhcchhc
Confidence 45555555553322 111245566666666663 343211 12333344444442 222222211 122333
Q ss_pred hcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEEeccC
Q 025444 115 STMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRG 152 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~LdL~~ 152 (252)
.||+|+.|.+-+|.++... =..++...|+|+.||..+
T Consensus 111 -~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 -SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred -cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 7999999999999987653 234566889999999876
No 54
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.05 E-value=0.0052 Score=54.54 Aligned_cols=62 Identities=15% Similarity=0.155 Sum_probs=37.1
Q ss_pred hcCCCCcEEEecCcccCHHH---H--------------------HHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCc
Q 025444 115 STMPKLKRLEMAYHVISTEI---V--------------------LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 171 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~---l--------------------~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~ 171 (252)
+.+|+|++|+|++|+|+... + ..+++++..|+.|+|.+. +||......++....|.
T Consensus 271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLS 349 (498)
T ss_pred hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceee
Confidence 56899999999999876531 1 122346778888888885 44322222224444555
Q ss_pred eeccCc
Q 025444 172 VLGPFV 177 (252)
Q Consensus 172 ~L~~~~ 177 (252)
.|..+.
T Consensus 350 ~l~l~~ 355 (498)
T KOG4237|consen 350 TLNLLS 355 (498)
T ss_pred eeehcc
Confidence 555443
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=96.03 E-value=0.0055 Score=59.68 Aligned_cols=103 Identities=13% Similarity=0.110 Sum_probs=49.5
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
.+-..|+++...-...-..+ .++|+.|.+.+|+++. +. ...++|++|+|++| .++. +....++|+.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l---~~~L~~L~L~~N~Lt~--LP---~lp~~Lk~LdLs~N-~Lts-----LP~lp~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCL---PAHITTLVIPDNNLTS--LP---ALPPELRTLEVSGN-QLTS-----LPVLPPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCCcCCcch---hcCCCEEEccCCcCCC--CC---CCCCCCcEEEecCC-ccCc-----ccCcccccce
Confidence 45566777765111111111 1367777777765553 11 12466777777664 3331 1111223333
Q ss_pred hccc-------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444 91 LCRN-------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 132 (252)
Q Consensus 91 L~~~-------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~ 132 (252)
|.+. +..+.+.++.+. .+....++|+.|+|++|.++.
T Consensus 267 L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-----~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 267 LSIFSNPLTHLPALPSGLCKLWIFGNQLT-----SLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred eeccCCchhhhhhchhhcCEEECcCCccc-----cccccccccceeECCCCcccc
Confidence 3221 122233343332 122235789999999988664
No 56
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.03 E-value=0.0055 Score=31.87 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=9.2
Q ss_pred CCccEEeccCCCCCCHHHHHHHH
Q 025444 60 SAVTFLDLSYCSKIGAPALEAIG 82 (252)
Q Consensus 60 ~~L~~L~Ls~c~~i~~~~l~~l~ 82 (252)
++|++|+|++|. |++.++.+|+
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 444555554432 4444444443
No 57
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.00 E-value=0.0017 Score=59.95 Aligned_cols=95 Identities=20% Similarity=0.253 Sum_probs=45.6
Q ss_pred CcEEEccCCCCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhCchh-hhhcccCeecccCCCCcCcHHHHH
Q 025444 37 LQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLL-VVLCRNMHPLDTADKLSQDDEANA 112 (252)
Q Consensus 37 L~~L~L~~~~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L-~~L~~~l~~l~l~~~~~~~~~~~~ 112 (252)
+..|.|.+|.+.+.++..+++. ++.|+.|+++++ .+++.++..+....+.. ..| +.+.+..|.++..+...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l----~~L~l~~c~l~~~g~~~ 163 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLL----QTLELVSCSLTSEGAAP 163 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHH----HHHHhhcccccccchHH
Confidence 5556666665555554444433 455666666663 45566666555544443 222 22233344444444433
Q ss_pred HHhc---CCCCcEEEecCcccCHHHHH
Q 025444 113 IAST---MPKLKRLEMAYHVISTEIVL 136 (252)
Q Consensus 113 l~~~---~~~L~~L~L~~~~it~~~l~ 136 (252)
++.. .+.|+.++++.|.+...+..
T Consensus 164 l~~~L~~~~~l~~l~l~~n~l~~~g~~ 190 (478)
T KOG4308|consen 164 LAAVLEKNEHLTELDLSLNGLIELGLL 190 (478)
T ss_pred HHHHHhcccchhHHHHHhcccchhhhH
Confidence 3322 34455555555554344333
No 58
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.91 E-value=0.0033 Score=53.99 Aligned_cols=105 Identities=21% Similarity=0.225 Sum_probs=66.4
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.|.++.|++|+..- ..+..+ ...++|+.|+|++|.++. .|+ -.++-|++.|.|+.+ .| +.++ .|
T Consensus 306 ~Pkir~L~lS~N~i-~~v~nL-a~L~~L~~LDLS~N~Ls~~~Gw---h~KLGNIKtL~La~N-~i-----E~LS----GL 370 (490)
T KOG1259|consen 306 APKLRRLILSQNRI-RTVQNL-AELPQLQLLDLSGNLLAECVGW---HLKLGNIKTLKLAQN-KI-----ETLS----GL 370 (490)
T ss_pred ccceeEEeccccce-eeehhh-hhcccceEeecccchhHhhhhh---HhhhcCEeeeehhhh-hH-----hhhh----hh
Confidence 58899999998511 112222 368899999999997765 344 356899999999984 22 2222 23
Q ss_pred hhhcccCeecccCCCCcCcHHHH-HHHhcCCCCcEEEecCcccC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEAN-AIASTMPKLKRLEMAYHVIS 131 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~it 131 (252)
.+| -++..+++.+..+..-... .|. ++|.|++|.|.+|++.
T Consensus 371 ~KL-YSLvnLDl~~N~Ie~ldeV~~IG-~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 371 RKL-YSLVNLDLSSNQIEELDEVNHIG-NLPCLETLRLTGNPLA 412 (490)
T ss_pred Hhh-hhheeccccccchhhHHHhcccc-cccHHHHHhhcCCCcc
Confidence 222 1114446666665544333 443 7888888888888843
No 59
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.86 E-value=0.012 Score=54.11 Aligned_cols=33 Identities=27% Similarity=0.130 Sum_probs=17.6
Q ss_pred CCCCcEEEecCcccCH------HHHHHHHhcCCCCCEEe
Q 025444 117 MPKLKRLEMAYHVIST------EIVLKILSSCALLEFLD 149 (252)
Q Consensus 117 ~~~L~~L~L~~~~it~------~~l~~i~~~~~~L~~Ld 149 (252)
...|++|-+.||+|.. +-+.+|-+.+|+|..||
T Consensus 269 ~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 269 GLPLEELVLEGNPLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred CCCHHHeeecCCccccchhhhHHHHHHHHHhcchheeec
Confidence 3456666666666332 12344555666665554
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.78 E-value=0.0085 Score=48.62 Aligned_cols=104 Identities=23% Similarity=0.293 Sum_probs=65.1
Q ss_pred CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH
Q 025444 59 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 138 (252)
Q Consensus 59 ~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i 138 (252)
..+...++|+++. + ..+ ..+|++..| +.+.+....++.-. -.+...+|+|..|.|.+|.|..-+=..-
T Consensus 41 ~d~~d~iDLtdNd-l-----~~l-~~lp~l~rL----~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~p 108 (233)
T KOG1644|consen 41 LDQFDAIDLTDND-L-----RKL-DNLPHLPRL----HTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDP 108 (233)
T ss_pred ccccceecccccc-h-----hhc-ccCCCcccc----ceEEecCCcceeec-cchhhhccccceEEecCcchhhhhhcch
Confidence 5677888888853 2 122 345555555 44444444443211 1233457999999999999766554555
Q ss_pred HhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceec
Q 025444 139 LSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 174 (252)
Q Consensus 139 ~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~ 174 (252)
+..||+|++|.+-+.+.-.... ..+.-..|+|++|.
T Consensus 109 La~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LD 146 (233)
T KOG1644|consen 109 LASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLD 146 (233)
T ss_pred hccCCccceeeecCCchhcccCceeEEEEecCcceEee
Confidence 5689999999998865443333 23456778888884
No 61
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.40 E-value=0.021 Score=30.98 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=21.6
Q ss_pred CCCcEEEecCcccCHHHHHHHHhcC
Q 025444 118 PKLKRLEMAYHVISTEIVLKILSSC 142 (252)
Q Consensus 118 ~~L~~L~L~~~~it~~~l~~i~~~~ 142 (252)
++|++|+|++|.|+++++..+++.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 6799999999999999998887654
No 62
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=95.39 E-value=0.043 Score=53.54 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=20.5
Q ss_pred CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
++|+.|+|++|.++. +..-+ .++|+.|+|++|.
T Consensus 346 ~sL~~L~Ls~N~L~~--LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 346 PELQVLDVSKNQITV--LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred CcccEEECCCCCCCc--CChhh--cCCcCEEECCCCc
Confidence 577888888777652 11111 2577777777764
No 63
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.37 E-value=0.019 Score=56.97 Aligned_cols=131 Identities=23% Similarity=0.208 Sum_probs=76.4
Q ss_pred HhCCCCcEEEccCCCC-CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 32 ENAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 32 ~~~~~L~~L~L~~~~i-~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
..+++|++|-+.++.- -..+-..+..++|.|+.|+|++|..++. --..|+ .+-+|+.| ++.++.+. .-.
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I~-~Li~LryL-------~L~~t~I~-~LP 611 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSK-LPSSIG-ELVHLRYL-------DLSDTGIS-HLP 611 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCc-CChHHh-hhhhhhcc-------cccCCCcc-ccc
Confidence 4578899999988742 1223334456799999999999765542 112222 34456666 44444332 111
Q ss_pred HHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceeccCc
Q 025444 111 NAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 177 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~~~ 177 (252)
..+ ..+++|.+|++..+. +... ..+...+++|++|.+.+-. ...+...+ ....+|+.|+.++
T Consensus 612 ~~l-~~Lk~L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~-~~~~~~~l-~el~~Le~L~~ls 674 (889)
T KOG4658|consen 612 SGL-GNLKKLIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSA-LSNDKLLL-KELENLEHLENLS 674 (889)
T ss_pred hHH-HHHHhhheeccccccccccc--cchhhhcccccEEEeeccc-cccchhhH-Hhhhcccchhhhe
Confidence 222 367789999998876 3221 4455568999999998743 32232222 3335555555433
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.05 E-value=0.014 Score=52.59 Aligned_cols=56 Identities=9% Similarity=0.211 Sum_probs=29.4
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCC
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKI 73 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i 73 (252)
|+++++|++++|. +..+...-++|++|.+.+| .++. +.... .++|+.|.|++|..+
T Consensus 51 ~~~l~~L~Is~c~----L~sLP~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 51 ARASGRLYIKDCD----IESLPVLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred hcCCCEEEeCCCC----CcccCCCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccc
Confidence 5777777777761 2222222235777777776 3321 11111 246777777776544
No 65
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=94.89 E-value=0.072 Score=46.30 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=66.7
Q ss_pred HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEec
Q 025444 50 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMA 126 (252)
Q Consensus 50 ~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~ 126 (252)
..+..+-..=|.|+..+|++...|+...+..++..+.+=++. ..+.+.+....+..+.+++ +.++.|++|++.
T Consensus 188 ~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~v----k~Fsla~tr~~d~vA~a~a~ml~~n~sl~slnve 263 (353)
T KOG3735|consen 188 SSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHV----KKFSLANTRSSDPVAFAIAEMLKENKSLTSLNVE 263 (353)
T ss_pred HHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchh----hhhhhhcccCCchhHHHHHHHHhhcchhhheecc
Confidence 445555555689999999998888888888877765443333 2234555566666666665 457999999999
Q ss_pred CcccCHHHHHHHHhcCCCCC
Q 025444 127 YHVISTEIVLKILSSCALLE 146 (252)
Q Consensus 127 ~~~it~~~l~~i~~~~~~L~ 146 (252)
+|.||..++.+++..++.=+
T Consensus 264 snFItg~gi~a~~~al~~n~ 283 (353)
T KOG3735|consen 264 SNFITGLGIMALLRALQSNK 283 (353)
T ss_pred ccccccHHHHHHHHHHhccc
Confidence 99999999998887554433
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.84 E-value=0.015 Score=52.20 Aligned_cols=133 Identities=25% Similarity=0.220 Sum_probs=72.9
Q ss_pred CccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444 12 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 91 (252)
Q Consensus 12 ~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L 91 (252)
+|+.|++++..- ..+..-...+++|+.|.++.|.+++ +.......++|+.|+++++ .++. +........+|+.|
T Consensus 141 nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~ls~N-~i~~--l~~~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGN-KISD--LPPEIELLSALEEL 214 (394)
T ss_pred hcccccccccch-hhhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhheeccCC-cccc--Cchhhhhhhhhhhh
Confidence 677787776421 1121223578899999999887776 2233225788888888885 3432 11111122224444
Q ss_pred cccCe----------------ecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444 92 CRNMH----------------PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 155 (252)
Q Consensus 92 ~~~l~----------------~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~ 155 (252)
.++.. .+.+.+....+ .......+++|+.|++++|.++.... +....+|+.|++++-..
T Consensus 215 ~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 215 DLSNNSIIELLSSLSNLKNLSGLELSNNKLED--LPESIGNLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNSL 289 (394)
T ss_pred hhcCCcceecchhhhhcccccccccCCceeee--ccchhccccccceecccccccccccc---ccccCccCEEeccCccc
Confidence 33222 01111111111 01233467778888888888776443 45678888888887433
No 67
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=94.65 E-value=0.055 Score=29.26 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=11.5
Q ss_pred CCCcEEEccCCCCCHHHHHHHHh
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAG 57 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~ 57 (252)
++|++|+|++|.|+++|...+++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHH
Confidence 34555555555555555544443
No 68
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.11 E-value=0.018 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=14.5
Q ss_pred hCCCCcEEEccCCCCCH-HHHHHH
Q 025444 33 NAGSLQTLRLPRSEMSD-SIVAQI 55 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~-~~l~~l 55 (252)
.++.|+.|.|.+|.+.- .|+..+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~l 130 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQEL 130 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHH
Confidence 46678888888775543 455444
No 69
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=94.08 E-value=0.046 Score=48.99 Aligned_cols=136 Identities=18% Similarity=0.131 Sum_probs=73.1
Q ss_pred CCccEEEecCCCCHHHHHHHHHhC-CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENA-GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~-~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
..++.|.+.+....+ +....... ++|+.|+++++.+.. +..-...+++|+.|++++|. +++- .......++|+
T Consensus 116 ~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~-l~~l--~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFND-LSDL--PKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCCccccc-Cccccccchhhcccccccccchhh--hhhhhhccccccccccCCch-hhhh--hhhhhhhhhhh
Confidence 457788777742212 22333344 489999999997765 21233679999999999963 4321 11111455666
Q ss_pred hhcccCee----------------cccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 90 VLCRNMHP----------------LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 90 ~L~~~l~~----------------l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.|.++... +.+++... .........++++..|.+..+++... ...+..++.|+.|+++++
T Consensus 190 ~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~--~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDL--PESIGNLSNLETLDLSNN 265 (394)
T ss_pred heeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeec--cchhccccccceeccccc
Confidence 66433221 11111100 00001112345556666666654431 233456777888888886
Q ss_pred CCc
Q 025444 154 WDV 156 (252)
Q Consensus 154 ~~i 156 (252)
...
T Consensus 266 ~i~ 268 (394)
T COG4886 266 QIS 268 (394)
T ss_pred ccc
Confidence 433
No 70
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.75 E-value=0.005 Score=48.89 Aligned_cols=108 Identities=19% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCCCcEEEccCCCCCH--HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444 34 AGSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 111 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~ 111 (252)
..+++.|.|+.++++. .++ ..+.+|+.|+++++ .|.. +..-..++|+|+.|++.+..+++.--..
T Consensus 32 ~s~ITrLtLSHNKl~~vppni----a~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~lprgf------ 98 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLTVVPPNI----AELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNILPRGF------ 98 (264)
T ss_pred hhhhhhhhcccCceeecCCcH----HHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcCcccc------
Confidence 4567888899886653 233 45688999999984 3432 2222235777888877666553322111
Q ss_pred HHHhcCCCCcEEEecCcccCHHH----------HHHH-------------HhcCCCCCEEeccCCCCcc
Q 025444 112 AIASTMPKLKRLEMAYHVISTEI----------VLKI-------------LSSCALLEFLDLRGCWDVK 157 (252)
Q Consensus 112 ~l~~~~~~L~~L~L~~~~it~~~----------l~~i-------------~~~~~~L~~LdL~~C~~i~ 157 (252)
..+|.|+.|+|.+|+++... +.++ +.++.+|+.|.++...-++
T Consensus 99 ---gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~ 164 (264)
T KOG0617|consen 99 ---GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLS 164 (264)
T ss_pred ---CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhh
Confidence 35788899998888765542 2221 2256778888887765553
No 71
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.65 E-value=0.017 Score=52.42 Aligned_cols=106 Identities=28% Similarity=0.296 Sum_probs=60.4
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 111 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~ 111 (252)
.+++|+.|++.++.|.. +..+...+++|++|+|+++ .|+. .++.. ++.|+.|.+ .++.+.+-.-.
T Consensus 93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~----l~~L~~L~l-------~~N~i~~~~~~ 158 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFN-KITKLEGLST----LTLLKELNL-------SGNLISDISGL 158 (414)
T ss_pred cccceeeeeccccchhh--cccchhhhhcchheecccc-ccccccchhh----ccchhhhee-------ccCcchhccCC
Confidence 46778888888876653 3332356788888888884 4542 22322 233655533 33322211110
Q ss_pred HHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 112 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 112 ~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
..+++|+.+++++|.++...-.. +..++.|+.+.+.+....
T Consensus 159 ---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 159 ---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred ---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 12677788888888766543311 456777777777765444
No 72
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=93.04 E-value=0.31 Score=47.68 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=10.1
Q ss_pred cCCCCcEEEecCcccCHHH
Q 025444 116 TMPKLKRLEMAYHVISTEI 134 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~ 134 (252)
.+|++..|+|.+|+++...
T Consensus 413 ~~~~l~~L~L~~Npls~~t 431 (754)
T PRK15370 413 EGPQPTRIIVEYNPFSERT 431 (754)
T ss_pred cCCCccEEEeeCCCccHHH
Confidence 3455555555555555433
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.96 E-value=0.035 Score=42.55 Aligned_cols=108 Identities=18% Similarity=0.156 Sum_probs=51.8
Q ss_pred CCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 36 SLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 36 ~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
.+..+.|++|.+-. ......+.+...|+..+|+++. +.. .-+.+....|.++.|++ ....+.+- ...+|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~-fp~kft~kf~t~t~lNl-------~~neisdv-PeE~A 97 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKK-FPKKFTIKFPTATTLNL-------ANNEISDV-PEELA 97 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhh-CCHHHhhccchhhhhhc-------chhhhhhc-hHHHh
Confidence 45556666664331 1122222344556666666631 111 11233333444444432 22222221 12244
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.+|.||.|++++|.+... .+.++. +.+|-+|+..+....
T Consensus 98 -am~aLr~lNl~~N~l~~~-p~vi~~-L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 98 -AMPALRSLNLRFNPLNAE-PRVIAP-LIKLDMLDSPENARA 136 (177)
T ss_pred -hhHHhhhcccccCccccc-hHHHHH-HHhHHHhcCCCCccc
Confidence 678888888888886532 233443 666777776664443
No 74
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.14 E-value=0.034 Score=50.49 Aligned_cols=105 Identities=23% Similarity=0.193 Sum_probs=62.1
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCch
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKL 87 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~ 87 (252)
..+|+.|++.+..-.. +..+...+++|+.|+|++|.|+. .++ ..++.|+.|+++++. |+. .++. .++.
T Consensus 94 ~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l----~~l~~L~~L~l~~N~-i~~~~~~~----~l~~ 163 (414)
T KOG0531|consen 94 LKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGL----STLTLLKELNLSGNL-ISDISGLE----SLKS 163 (414)
T ss_pred ccceeeeeccccchhh-cccchhhhhcchheeccccccccccch----hhccchhhheeccCc-chhccCCc----cchh
Confidence 4567777776641111 22223578999999999998876 444 345669999999863 321 1121 1444
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 132 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~ 132 (252)
|+.+ .++++.+....-.. ...+++|+.+.+++|.+..
T Consensus 164 L~~l-------~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 164 LKLL-------DLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred hhcc-------cCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 5555 44444433322211 3578888888888887443
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=91.72 E-value=0.056 Score=41.47 Aligned_cols=92 Identities=25% Similarity=0.221 Sum_probs=57.4
Q ss_pred HHHHHHHhcC---CCccEEeccCCCCC-CHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH----HHHhcCCCCc
Q 025444 50 SIVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN----AIASTMPKLK 121 (252)
Q Consensus 50 ~~l~~l~~~~---~~L~~L~Ls~c~~i-~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~----~l~~~~~~L~ 121 (252)
.++...+++| ..+..++|+.|... -.+++..+.+ -.+|+.. + +.+.++. .+...+|.++
T Consensus 14 rgV~evVercedakE~h~ldLssc~lm~i~davy~l~~-~~el~~i-------~-----ls~N~fk~fp~kft~kf~t~t 80 (177)
T KOG4579|consen 14 RGVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSK-GYELTKI-------S-----LSDNGFKKFPKKFTIKFPTAT 80 (177)
T ss_pred hhHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhC-CceEEEE-------e-----cccchhhhCCHHHhhccchhh
Confidence 4556666666 46788899998533 1222222222 2222222 2 2333333 4455678999
Q ss_pred EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 122 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 122 ~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.|+|+.|.|++.-.. +...|.|++|++++.+..
T Consensus 81 ~lNl~~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 81 TLNLANNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhcchhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 999999999886555 457999999999986544
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.03 E-value=0.19 Score=23.78 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=4.8
Q ss_pred CCcEEEecCccc
Q 025444 119 KLKRLEMAYHVI 130 (252)
Q Consensus 119 ~L~~L~L~~~~i 130 (252)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555543
No 77
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.77 E-value=0.45 Score=42.84 Aligned_cols=107 Identities=20% Similarity=0.138 Sum_probs=57.6
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCC---HHHHHHHHhh
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG---APALEAIGKH 84 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~---~~~l~~l~~~ 84 (252)
...++|..|++++.+-...-..+ .....|+.|+++.|++.. +..++-....|+.+-.++ ..++ ..++. .
T Consensus 432 ~~l~kLt~L~L~NN~Ln~LP~e~-~~lv~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~-nqi~~vd~~~l~----n 503 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDLPEEM-GSLVRLQTLNLSFNRFRM--LPECLYELQTLETLLASN-NQIGSVDPSGLK----N 503 (565)
T ss_pred Hhhhcceeeecccchhhhcchhh-hhhhhhheeccccccccc--chHHHhhHHHHHHHHhcc-ccccccChHHhh----h
Confidence 44678999999985322211112 234459999999985432 222222223344443443 2232 22232 3
Q ss_pred CchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444 85 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 131 (252)
Q Consensus 85 ~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it 131 (252)
+.+|++|.++-. .+ ..+-.+..+|.+|++|.|+||++.
T Consensus 504 m~nL~tLDL~nN-------dl--q~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 504 MRNLTTLDLQNN-------DL--QQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhhcceeccCCC-------ch--hhCChhhccccceeEEEecCCccC
Confidence 344666644322 11 112233468999999999999965
No 78
>PRK15386 type III secretion protein GogB; Provisional
Probab=87.89 E-value=0.92 Score=41.18 Aligned_cols=50 Identities=16% Similarity=0.187 Sum_probs=33.1
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccC
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY 69 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~ 69 (252)
..+|++|.+++|..-..+... -.++|+.|.+.+| .+. .+ -+.|+.|.|+.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~--LP~nLe~L~Ls~Cs~L~-----sL---P~sLe~L~L~~ 121 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGS--IPEGLEKLTVCHCPEIS-----GL---PESVRSLEIKG 121 (426)
T ss_pred CCCCcEEEccCCCCcccCCch--hhhhhhheEccCccccc-----cc---ccccceEEeCC
Confidence 457999999987442222221 1358999999998 553 11 35788888865
No 79
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=86.37 E-value=0.34 Score=43.37 Aligned_cols=37 Identities=22% Similarity=0.153 Sum_probs=27.5
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 152 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~ 152 (252)
.++..|+.|+|.+|+||..+-.+ .+....|..|+|-.
T Consensus 319 ~~ls~L~tL~L~~N~it~~~~~a-F~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 319 QGLSGLKTLSLYDNQITTVAPGA-FQTLFSLSTLNLLS 355 (498)
T ss_pred hccccceeeeecCCeeEEEeccc-ccccceeeeeehcc
Confidence 46789999999999987654332 34667788888854
No 80
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=84.97 E-value=0.5 Score=42.58 Aligned_cols=7 Identities=29% Similarity=0.648 Sum_probs=3.2
Q ss_pred CCceecc
Q 025444 169 NLKVLGP 175 (252)
Q Consensus 169 ~L~~L~~ 175 (252)
.++.|+.
T Consensus 37 ~IRkLge 43 (458)
T PF10446_consen 37 AIRKLGE 43 (458)
T ss_pred HHhhhhH
Confidence 3444543
No 81
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=84.44 E-value=0.18 Score=37.31 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=15.1
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 171 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~ 171 (252)
.+++|+.+.+..+ ++.-+- ....+| +|+.+.+.. .++.-+......|++||
T Consensus 79 ~~~~l~~i~~~~~-~~~i~~-~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 79 NCTNLKNIDIPSN-ITEIGS-SSFSNC-NLKEINIPS--NITKIEENAFKNCTKLK 129 (129)
T ss_dssp T-TTECEEEETTT--BEEHT-TTTTT--T--EEE-TT--B-SS----GGG------
T ss_pred ccccccccccCcc-ccEEch-hhhcCC-CceEEEECC--CccEECCccccccccCC
Confidence 4566677766543 221111 113355 666666654 22222333345555553
No 82
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=84.01 E-value=1.2 Score=23.52 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=18.8
Q ss_pred CCcEEEecCcccCHH-HHHHHHhcCC
Q 025444 119 KLKRLEMAYHVISTE-IVLKILSSCA 143 (252)
Q Consensus 119 ~L~~L~L~~~~it~~-~l~~i~~~~~ 143 (252)
+|++|.|....+.++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 478888888885444 6888888876
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=83.64 E-value=1.3 Score=41.37 Aligned_cols=75 Identities=27% Similarity=0.270 Sum_probs=49.6
Q ss_pred ccCCCCcC-cHHHHHHHhcCCCCcEEEecCc--ccCHH-HHHHHHhcCCCCCEEeccCCCCccC-Ch-----HHHHhcCC
Q 025444 99 DTADKLSQ-DDEANAIASTMPKLKRLEMAYH--VISTE-IVLKILSSCALLEFLDLRGCWDVKL-DD-----KFMKGNFP 168 (252)
Q Consensus 99 ~l~~~~~~-~~~~~~l~~~~~~L~~L~L~~~--~it~~-~l~~i~~~~~~L~~LdL~~C~~i~~-~~-----~~l~~~~~ 168 (252)
++++..+. =+.+.+++...|+|+.|+|++| .+... .+..+ +...|++|-+.|.+-.+. .. ..+.+.+|
T Consensus 224 ~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf~~~s~yv~~i~~~FP 301 (585)
T KOG3763|consen 224 SLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTFSDRSEYVSAIRELFP 301 (585)
T ss_pred ecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccchhhhHHHHHHHHHhcc
Confidence 34444332 2445578888999999999999 44432 22221 567899999998765542 11 35678999
Q ss_pred CCceecc
Q 025444 169 NLKVLGP 175 (252)
Q Consensus 169 ~L~~L~~ 175 (252)
+|..|..
T Consensus 302 KL~~LDG 308 (585)
T KOG3763|consen 302 KLLRLDG 308 (585)
T ss_pred hheeecC
Confidence 9999964
No 84
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.62 E-value=0.74 Score=23.14 Aligned_cols=9 Identities=67% Similarity=1.110 Sum_probs=4.4
Q ss_pred CCEEeccCC
Q 025444 145 LEFLDLRGC 153 (252)
Q Consensus 145 L~~LdL~~C 153 (252)
|++|+|++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 444555554
No 85
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=76.51 E-value=7 Score=34.34 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=46.3
Q ss_pred HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHH---HHHHHHhhCchhhhhcccCe
Q 025444 24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAP---ALEAIGKHCKLLVVLCRNMH 96 (252)
Q Consensus 24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~---~l~~l~~~~~~L~~L~~~l~ 96 (252)
+..+..+-.+-|+|+.++|.+. .|....+..++.. ....+...+.+ +..++. ++..+.+.|+.|++|
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~sl----- 260 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSL----- 260 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhhe-----
Confidence 4455556666677777777766 6666555444433 34455555544 333332 233334445555554
Q ss_pred ecccCCCCcCcHHHHHHHhcC
Q 025444 97 PLDTADKLSQDDEANAIASTM 117 (252)
Q Consensus 97 ~l~l~~~~~~~~~~~~l~~~~ 117 (252)
++.+..++..++.++...+
T Consensus 261 --nvesnFItg~gi~a~~~al 279 (353)
T KOG3735|consen 261 --NVESNFITGLGIMALLRAL 279 (353)
T ss_pred --eccccccccHHHHHHHHHH
Confidence 5556666666666665443
No 86
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=72.48 E-value=3 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.5
Q ss_pred CCCcEEEecCcccC
Q 025444 118 PKLKRLEMAYHVIS 131 (252)
Q Consensus 118 ~~L~~L~L~~~~it 131 (252)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666544
No 87
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=72.48 E-value=3 Score=21.55 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.5
Q ss_pred CCCcEEEecCcccC
Q 025444 118 PKLKRLEMAYHVIS 131 (252)
Q Consensus 118 ~~L~~L~L~~~~it 131 (252)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 45666666666544
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.77 E-value=5.4 Score=21.08 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=10.1
Q ss_pred CCCcEEEecCcccC
Q 025444 118 PKLKRLEMAYHVIS 131 (252)
Q Consensus 118 ~~L~~L~L~~~~it 131 (252)
.+|+.|.+++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 56777888777764
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=59.85 E-value=4.9 Score=37.95 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=18.2
Q ss_pred CCcEEEccCCCCCH--HHHHHHHhcCCCccEEeccCCC
Q 025444 36 SLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCS 71 (252)
Q Consensus 36 ~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~Ls~c~ 71 (252)
-|+.|-+++|+++. ..+ ...+.|..|+++.|.
T Consensus 144 pLkvli~sNNkl~~lp~~i----g~~~tl~~ld~s~ne 177 (722)
T KOG0532|consen 144 PLKVLIVSNNKLTSLPEEI----GLLPTLAHLDVSKNE 177 (722)
T ss_pred cceeEEEecCccccCCccc----ccchhHHHhhhhhhh
Confidence 36666666665442 222 235667777777753
No 90
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=49.06 E-value=2.8 Score=41.64 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=9.0
Q ss_pred eccCCCCccCChHHHHh
Q 025444 149 DLRGCWDVKLDDKFMKG 165 (252)
Q Consensus 149 dL~~C~~i~~~~~~l~~ 165 (252)
-+.+|..+...+..+++
T Consensus 259 v~~y~~~~e~~dDELrE 275 (1233)
T KOG1824|consen 259 VADYCNKIEEDDDELRE 275 (1233)
T ss_pred HHHHhcccccCcHHHHH
Confidence 34567666555544444
No 91
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=42.07 E-value=17 Score=36.22 Aligned_cols=13 Identities=15% Similarity=0.611 Sum_probs=5.4
Q ss_pred cCCCCcEEEecCc
Q 025444 116 TMPKLKRLEMAYH 128 (252)
Q Consensus 116 ~~~~L~~L~L~~~ 128 (252)
..|.|-.=.+.+|
T Consensus 1298 ~VP~Ldqc~VtFN 1310 (1516)
T KOG1832|consen 1298 SVPSLDQCAVTFN 1310 (1516)
T ss_pred cCccccceEEEec
Confidence 3444444434333
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=39.67 E-value=17 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=9.3
Q ss_pred CCCcEEEecCcccC
Q 025444 118 PKLKRLEMAYHVIS 131 (252)
Q Consensus 118 ~~L~~L~L~~~~it 131 (252)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 45677777777654
No 93
>PHA02811 putative host range protein; Provisional
Probab=36.66 E-value=14 Score=29.47 Aligned_cols=8 Identities=13% Similarity=0.397 Sum_probs=3.3
Q ss_pred CCCCceec
Q 025444 167 FPNLKVLG 174 (252)
Q Consensus 167 ~~~L~~L~ 174 (252)
+-+++.++
T Consensus 142 ~DK~~fm~ 149 (197)
T PHA02811 142 YDQVNYLK 149 (197)
T ss_pred hHHHHHHH
Confidence 33444444
No 94
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=33.32 E-value=1.2e+02 Score=22.70 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=23.9
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS 45 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~ 45 (252)
.-.++=+.+.|.--+++..+-.+...||+|+.+.++..
T Consensus 14 ~Ln~nE~~VHlAFRPSN~Dif~Lv~~CP~lk~iqiP~S 51 (131)
T PF08004_consen 14 TLNPNEEIVHLAFRPSNKDIFSLVERCPNLKAIQIPPS 51 (131)
T ss_pred hcCCCceEEEEEecCcchHHHHHHHhCCCCeEEeCChH
Confidence 33445555555555666666666677777777777765
No 95
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=32.93 E-value=93 Score=20.00 Aligned_cols=29 Identities=31% Similarity=0.415 Sum_probs=14.1
Q ss_pred cEEEecCcccCHHHHHHHHh-----cCCCCCEEe
Q 025444 121 KRLEMAYHVISTEIVLKILS-----SCALLEFLD 149 (252)
Q Consensus 121 ~~L~L~~~~it~~~l~~i~~-----~~~~L~~Ld 149 (252)
+.+.+..+.++...+..+++ ..|+|++|.
T Consensus 35 ~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~ 68 (70)
T PF07735_consen 35 KKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLE 68 (70)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEE
Confidence 34444444455555554443 345555554
No 96
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=31.68 E-value=35 Score=18.06 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.5
Q ss_pred HHHhcCCCCCEEeccC
Q 025444 137 KILSSCALLEFLDLRG 152 (252)
Q Consensus 137 ~i~~~~~~L~~LdL~~ 152 (252)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3455677888777653
No 97
>PF11332 DUF3134: Protein of unknown function (DUF3134); InterPro: IPR021481 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.14 E-value=23 Score=23.90 Aligned_cols=11 Identities=55% Similarity=0.894 Sum_probs=4.9
Q ss_pred cCCCCCCCCcc
Q 025444 205 AGEMGDYDDDD 215 (252)
Q Consensus 205 ~d~~~~~~~~~ 215 (252)
.+++++||+++
T Consensus 57 m~~dd~~~d~d 67 (73)
T PF11332_consen 57 MGDDDDYYDDD 67 (73)
T ss_pred hcCCccccccc
Confidence 34444554443
No 98
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=28.83 E-value=23 Score=34.58 Aligned_cols=9 Identities=22% Similarity=0.922 Sum_probs=5.6
Q ss_pred cccccCCcc
Q 025444 179 DYYEINDWD 187 (252)
Q Consensus 179 ~~~~~~~~~ 187 (252)
.|++.-+|.
T Consensus 861 ~Ffe~GgW~ 869 (960)
T KOG1189|consen 861 AFFEDGGWS 869 (960)
T ss_pred HHHhcCCee
Confidence 566666673
No 99
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.47 E-value=34 Score=34.35 Aligned_cols=8 Identities=38% Similarity=0.455 Sum_probs=3.2
Q ss_pred HhcCCCCC
Q 025444 139 LSSCALLE 146 (252)
Q Consensus 139 ~~~~~~L~ 146 (252)
+..-|.|-
T Consensus 1296 Lh~VP~Ld 1303 (1516)
T KOG1832|consen 1296 LHSVPSLD 1303 (1516)
T ss_pred HhcCcccc
Confidence 33444443
No 100
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=26.30 E-value=46 Score=24.37 Aligned_cols=35 Identities=20% Similarity=0.304 Sum_probs=17.4
Q ss_pred hcCCCCcEEEecCcccC-HHHHHHHHhcCCCCCEEecc
Q 025444 115 STMPKLKRLEMAYHVIS-TEIVLKILSSCALLEFLDLR 151 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it-~~~l~~i~~~~~~L~~LdL~ 151 (252)
.++++|.. +|+.-.++ -..+..+..+|+.| ..+|+
T Consensus 58 ~~~~~l~~-dls~w~~s~v~~~~~mF~~~~~l-~~~l~ 93 (120)
T PF03382_consen 58 AGCSSLNQ-DLSNWDTSNVTNMSNMFSGCSSL-NQDLS 93 (120)
T ss_pred hhhhhcCC-CcccccccccccHHHHHhhhHHc-CCchh
Confidence 35555555 55442211 12345566667666 45554
No 101
>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members. Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.
Probab=21.09 E-value=1e+02 Score=18.82 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=19.3
Q ss_pred CCccEEEecCCCC----HHHHHHHHHhCCCCcEEEcc
Q 025444 11 GSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRLP 43 (252)
Q Consensus 11 ~~L~~L~l~~~~~----d~~l~~i~~~~~~L~~L~L~ 43 (252)
.+|+.+.+.++.. -..+.++..+.+.|+.+.+.
T Consensus 14 s~Lk~v~~~~f~g~~~e~~f~~yil~na~~Lk~m~i~ 50 (51)
T PF08387_consen 14 SHLKFVEIKGFRGEENELEFAKYILENAPVLKKMTIS 50 (51)
T ss_pred heeEEEEEEeeeCcHHHHHHHHHHHhhhhhhcEEEEE
Confidence 4566666665422 23355666777777776653
No 102
>PF11702 DUF3295: Protein of unknown function (DUF3295); InterPro: IPR021711 This family is conserved in fungi but the function is not known.
Probab=20.02 E-value=46 Score=31.03 Aligned_cols=7 Identities=14% Similarity=0.378 Sum_probs=3.8
Q ss_pred ccccccc
Q 025444 217 IYEGMWD 223 (252)
Q Consensus 217 ~~~~~~~ 223 (252)
||+.+|+
T Consensus 310 DDssDWE 316 (507)
T PF11702_consen 310 DDSSDWE 316 (507)
T ss_pred ccchhhh
Confidence 3466664
Done!