Query 025444
Match_columns 252
No_of_seqs 360 out of 1532
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:26:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025444.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025444hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ast_B S-phase kinase-associat 99.7 7.9E-17 2.7E-21 139.4 16.6 158 10-175 92-254 (336)
2 2ca6_A RAN GTPase-activating p 99.7 8E-17 2.7E-21 142.4 15.4 160 8-175 119-310 (386)
3 3ogk_B Coronatine-insensitive 99.7 8E-17 2.7E-21 149.5 15.0 166 8-175 315-520 (592)
4 2ca6_A RAN GTPase-activating p 99.7 1.5E-16 5.2E-21 140.7 15.9 138 9-154 92-255 (386)
5 2ast_B S-phase kinase-associat 99.7 1.8E-16 6.2E-21 137.1 14.3 160 7-175 114-279 (336)
6 3ogk_B Coronatine-insensitive 99.7 4.9E-16 1.7E-20 144.2 16.7 168 6-174 337-544 (592)
7 2p1m_B Transport inhibitor res 99.7 1.4E-15 4.7E-20 141.1 15.8 141 26-175 363-513 (594)
8 2p1m_B Transport inhibitor res 99.7 1.2E-15 4E-20 141.5 14.8 159 6-174 367-537 (594)
9 3e4g_A ATP synthase subunit S, 99.6 6.9E-16 2.4E-20 121.9 6.5 107 35-172 61-171 (176)
10 3e4g_A ATP synthase subunit S, 99.5 2.1E-14 7.3E-19 113.4 7.2 102 11-146 61-170 (176)
11 3un9_A NLR family member X1; l 99.5 1.8E-13 6.2E-18 120.9 12.6 140 6-153 67-221 (372)
12 3un9_A NLR family member X1; l 99.5 2.2E-13 7.5E-18 120.3 11.5 149 6-160 96-255 (372)
13 1z7x_W Ribonuclease inhibitor; 99.4 1.9E-12 6.4E-17 116.4 13.3 137 9-153 225-380 (461)
14 1z7x_W Ribonuclease inhibitor; 99.4 3.2E-12 1.1E-16 114.9 14.7 162 8-175 25-206 (461)
15 1io0_A Tropomodulin; LRR prote 99.4 5.7E-12 1.9E-16 100.5 14.0 126 24-154 25-162 (185)
16 3goz_A Leucine-rich repeat-con 99.3 7.9E-12 2.7E-16 109.5 10.4 141 12-153 52-235 (362)
17 3goz_A Leucine-rich repeat-con 99.3 4.2E-11 1.4E-15 104.9 12.0 147 7-154 18-207 (362)
18 1io0_A Tropomodulin; LRR prote 99.2 2.6E-10 8.7E-15 90.8 14.2 121 9-134 34-167 (185)
19 2je0_A Acidic leucine-rich nuc 99.2 2E-12 6.8E-17 98.9 0.7 61 115-175 85-147 (149)
20 2ra8_A Uncharacterized protein 99.1 3E-11 1E-15 106.2 5.2 159 10-175 138-314 (362)
21 2ell_A Acidic leucine-rich nuc 99.1 2.8E-12 9.7E-17 100.0 -1.8 129 35-175 24-154 (168)
22 2je0_A Acidic leucine-rich nuc 99.1 2.9E-11 1E-15 92.3 2.8 133 8-152 14-149 (149)
23 4ezg_A Putative uncharacterize 99.1 4.3E-11 1.5E-15 95.9 2.5 144 10-175 43-188 (197)
24 2ell_A Acidic leucine-rich nuc 99.0 5.1E-11 1.8E-15 92.8 1.3 137 8-156 21-160 (168)
25 4ezg_A Putative uncharacterize 99.0 6.7E-11 2.3E-15 94.8 1.2 128 9-154 64-192 (197)
26 1pgv_A TMD-1, tropomodulin TMD 99.0 6.1E-09 2.1E-13 83.5 12.5 125 24-153 30-167 (197)
27 4fmz_A Internalin; leucine ric 98.9 2.8E-09 9.7E-14 92.1 8.8 56 116-175 263-318 (347)
28 2ra8_A Uncharacterized protein 98.9 8.9E-09 3.1E-13 90.4 10.8 138 8-156 169-319 (362)
29 2z80_A TOLL-like receptor 2, v 98.9 4.7E-10 1.6E-14 97.6 2.3 36 139-175 273-308 (353)
30 1h6u_A Internalin H; cell adhe 98.9 2.7E-09 9.2E-14 91.4 6.2 53 116-174 171-223 (308)
31 4fmz_A Internalin; leucine ric 98.8 2.7E-09 9.1E-14 92.3 5.6 144 8-175 196-340 (347)
32 1h6u_A Internalin H; cell adhe 98.8 4.8E-09 1.6E-13 89.8 6.7 141 9-175 61-202 (308)
33 1h6t_A Internalin B; cell adhe 98.8 3.5E-09 1.2E-13 90.0 5.7 55 115-175 153-207 (291)
34 1ozn_A Reticulon 4 receptor; N 98.8 1.7E-10 6E-15 97.3 -2.7 160 10-175 55-232 (285)
35 1wwl_A Monocyte differentiatio 98.8 6.1E-10 2.1E-14 95.5 0.1 158 9-175 93-260 (312)
36 2o6q_A Variable lymphocyte rec 98.8 1.6E-10 5.3E-15 97.1 -4.0 59 11-70 37-95 (270)
37 1m9s_A Internalin B; cell inva 98.8 5.2E-09 1.8E-13 97.9 5.8 141 9-175 63-204 (605)
38 1ozn_A Reticulon 4 receptor; N 98.8 2E-10 6.7E-15 97.0 -4.1 132 10-153 31-163 (285)
39 3zyi_A Leucine-rich repeat-con 98.7 2.3E-10 7.8E-15 103.1 -4.3 58 116-175 240-297 (452)
40 1a9n_A U2A', U2A'; complex (nu 98.7 1.4E-09 4.7E-14 85.5 0.6 131 10-153 18-150 (176)
41 3rfs_A Internalin B, repeat mo 98.7 7.4E-10 2.5E-14 93.1 -1.1 55 11-70 41-95 (272)
42 1wwl_A Monocyte differentiatio 98.7 1.7E-09 5.6E-14 92.7 1.1 139 8-154 118-264 (312)
43 3zyj_A Leucine-rich repeat-con 98.7 2.2E-10 7.4E-15 102.8 -5.0 58 116-175 229-286 (440)
44 1h6t_A Internalin B; cell adhe 98.7 1.2E-08 4.1E-13 86.6 6.1 141 10-175 45-185 (291)
45 4fcg_A Uncharacterized protein 98.7 2.9E-10 9.8E-15 98.4 -4.1 78 10-93 80-157 (328)
46 4glp_A Monocyte differentiatio 98.7 5.9E-10 2E-14 95.4 -2.1 59 11-70 91-155 (310)
47 1o6v_A Internalin A; bacterial 98.7 1.3E-08 4.4E-13 91.9 6.5 147 10-175 220-382 (466)
48 4glp_A Monocyte differentiatio 98.7 5.4E-09 1.8E-13 89.4 3.7 82 11-94 64-153 (310)
49 2z7x_B TOLL-like receptor 1, v 98.7 2.5E-09 8.5E-14 97.6 1.5 150 10-175 323-475 (520)
50 1pgv_A TMD-1, tropomodulin TMD 98.7 6.4E-08 2.2E-12 77.6 9.5 123 49-175 30-164 (197)
51 2o6s_A Variable lymphocyte rec 98.7 3.5E-10 1.2E-14 91.1 -4.0 133 10-154 27-159 (208)
52 1a9n_A U2A', U2A'; complex (nu 98.7 5.7E-09 1.9E-13 81.9 3.1 129 33-175 17-147 (176)
53 2z81_A CD282 antigen, TOLL-lik 98.7 7.7E-08 2.6E-12 88.1 10.8 38 33-70 332-371 (549)
54 2z66_A Variable lymphocyte rec 98.7 1.5E-10 5.2E-15 98.6 -6.9 135 9-154 76-210 (306)
55 3rfs_A Internalin B, repeat mo 98.7 4.3E-10 1.5E-14 94.6 -4.0 151 9-175 61-212 (272)
56 4fcg_A Uncharacterized protein 98.7 4.8E-10 1.7E-14 97.0 -3.9 149 10-175 103-260 (328)
57 3m19_A Variable lymphocyte rec 98.7 6.1E-10 2.1E-14 92.4 -3.3 152 11-175 35-186 (251)
58 1ds9_A Outer arm dynein; leuci 98.7 4.5E-10 1.5E-14 90.0 -4.1 147 12-174 24-180 (198)
59 3o53_A Protein LRIM1, AGAP0063 98.7 6.1E-10 2.1E-14 95.7 -3.7 60 8-70 31-90 (317)
60 2o6q_A Variable lymphocyte rec 98.7 6.1E-10 2.1E-14 93.4 -3.9 153 10-175 60-212 (270)
61 1xeu_A Internalin C; cellular 98.7 9E-09 3.1E-13 86.2 3.3 139 10-175 40-179 (263)
62 1o6v_A Internalin A; bacterial 98.7 3.1E-08 1.1E-12 89.4 6.8 35 116-153 307-341 (466)
63 3t6q_A CD180 antigen; protein- 98.6 4.7E-10 1.6E-14 104.2 -5.5 59 10-70 277-335 (606)
64 3v47_A TOLL-like receptor 5B a 98.6 5.6E-09 1.9E-13 93.5 1.8 38 33-70 101-139 (455)
65 3v47_A TOLL-like receptor 5B a 98.6 8.2E-10 2.8E-14 99.0 -3.8 138 10-156 29-167 (455)
66 2z66_A Variable lymphocyte rec 98.6 2.5E-10 8.7E-15 97.2 -7.5 155 9-175 99-255 (306)
67 1m9s_A Internalin B; cell inva 98.6 1.9E-08 6.4E-13 94.1 4.4 141 10-175 42-182 (605)
68 1xku_A Decorin; proteoglycan, 98.6 3.4E-09 1.2E-13 91.2 -0.7 114 57-175 142-270 (330)
69 2z62_A TOLL-like receptor 4, v 98.6 6.2E-10 2.1E-14 93.5 -5.4 135 10-156 27-162 (276)
70 1ogq_A PGIP-2, polygalacturona 98.6 6.1E-10 2.1E-14 95.6 -5.6 37 116-154 219-255 (313)
71 3rgz_A Protein brassinosteroid 98.6 1.4E-09 4.7E-14 104.3 -3.8 158 10-174 99-275 (768)
72 2id5_A Lingo-1, leucine rich r 98.6 1.5E-09 5.1E-14 98.1 -3.6 37 116-153 150-186 (477)
73 2id5_A Lingo-1, leucine rich r 98.6 1.5E-09 5.1E-14 98.1 -3.7 152 10-174 31-182 (477)
74 1p9a_G Platelet glycoprotein I 98.6 1.2E-09 4.2E-14 92.8 -4.3 57 11-70 31-87 (290)
75 3m19_A Variable lymphocyte rec 98.6 1.5E-09 5.2E-14 90.0 -4.0 136 9-156 57-192 (251)
76 2z63_A TOLL-like receptor 4, v 98.6 4.8E-10 1.6E-14 103.2 -7.9 38 116-153 443-480 (570)
77 3oja_A Leucine-rich immune mol 98.5 1.3E-09 4.6E-14 99.2 -5.4 57 10-70 33-90 (487)
78 3t6q_A CD180 antigen; protein- 98.5 1E-09 3.5E-14 101.9 -6.3 58 116-174 447-506 (606)
79 3o53_A Protein LRIM1, AGAP0063 98.5 2.2E-09 7.7E-14 92.1 -4.2 56 34-91 119-174 (317)
80 1ds9_A Outer arm dynein; leuci 98.5 2E-08 6.8E-13 80.2 1.5 126 9-150 46-181 (198)
81 3o6n_A APL1; leucine-rich repe 98.5 6.5E-09 2.2E-13 91.5 -1.8 16 116-131 246-261 (390)
82 2z62_A TOLL-like receptor 4, v 98.5 5.2E-09 1.8E-13 87.8 -2.4 114 9-132 50-163 (276)
83 3vq2_A TLR4, TOLL-like recepto 98.5 1.1E-09 3.7E-14 101.8 -7.4 57 116-174 471-527 (606)
84 3zyj_A Leucine-rich repeat-con 98.5 3.1E-09 1.1E-13 95.2 -4.2 57 116-174 205-261 (440)
85 3rgz_A Protein brassinosteroid 98.5 2.5E-09 8.4E-14 102.6 -5.3 140 8-154 197-354 (768)
86 2z80_A TOLL-like receptor 2, v 98.5 1.4E-09 4.8E-14 94.6 -6.5 16 33-48 74-89 (353)
87 2z7x_B TOLL-like receptor 1, v 98.5 2.5E-08 8.6E-13 90.9 1.5 129 32-175 321-451 (520)
88 3zyi_A Leucine-rich repeat-con 98.5 4E-09 1.4E-13 94.8 -3.9 57 116-174 216-272 (452)
89 2xwt_C Thyrotropin receptor; s 98.5 3.4E-10 1.2E-14 93.2 -10.3 82 11-94 31-113 (239)
90 1xeu_A Internalin C; cellular 98.5 2.3E-08 8E-13 83.7 0.8 124 9-156 61-185 (263)
91 3o6n_A APL1; leucine-rich repe 98.5 7.3E-09 2.5E-13 91.2 -2.4 132 11-154 45-176 (390)
92 3a79_B TLR6, VLRB.59, TOLL-lik 98.5 9.1E-09 3.1E-13 95.0 -2.0 55 118-175 450-504 (562)
93 2z81_A CD282 antigen, TOLL-lik 98.4 9.6E-09 3.3E-13 94.2 -2.5 60 9-70 48-108 (549)
94 2v9t_B SLIT homolog 2 protein 98.4 3.1E-09 1.1E-13 86.6 -5.2 37 33-70 54-90 (220)
95 2z63_A TOLL-like receptor 4, v 98.4 3.6E-09 1.2E-13 97.3 -5.5 134 10-154 27-160 (570)
96 3vq2_A TLR4, TOLL-like recepto 98.4 7.2E-09 2.5E-13 96.2 -3.6 154 9-175 397-552 (606)
97 4g8a_A TOLL-like receptor 4; l 98.4 4.5E-09 1.5E-13 97.4 -5.2 133 11-155 52-185 (635)
98 3e6j_A Variable lymphocyte rec 98.4 7E-09 2.4E-13 85.0 -3.8 36 116-153 110-145 (229)
99 3oja_B Anopheles plasmodium-re 98.4 1.8E-08 6E-13 93.9 -1.7 16 116-131 252-267 (597)
100 4ecn_A Leucine-rich repeat pro 98.4 8E-08 2.7E-12 93.3 2.1 135 9-154 446-606 (876)
101 1ziw_A TOLL-like receptor 3; i 98.4 1.3E-08 4.3E-13 95.9 -3.5 59 11-70 25-83 (680)
102 1ziw_A TOLL-like receptor 3; i 98.4 1.6E-08 5.5E-13 95.2 -2.7 136 9-155 47-183 (680)
103 3oja_A Leucine-rich immune mol 98.4 9.8E-09 3.3E-13 93.5 -4.1 58 34-93 119-176 (487)
104 2v70_A SLIT-2, SLIT homolog 2 98.4 5.7E-09 1.9E-13 85.1 -5.2 37 116-153 103-139 (220)
105 3e6j_A Variable lymphocyte rec 98.4 2.5E-08 8.5E-13 81.7 -1.4 134 10-156 39-172 (229)
106 3oja_B Anopheles plasmodium-re 98.4 2.5E-08 8.4E-13 93.0 -2.1 132 11-154 51-182 (597)
107 2o6s_A Variable lymphocyte rec 98.4 2.4E-08 8.2E-13 80.2 -1.9 129 34-175 27-155 (208)
108 1p9a_G Platelet glycoprotein I 98.4 1.1E-08 3.6E-13 87.0 -4.2 148 9-174 53-201 (290)
109 2ft3_A Biglycan; proteoglycan, 98.4 1.1E-08 3.8E-13 88.1 -4.3 57 116-175 215-271 (332)
110 1xku_A Decorin; proteoglycan, 98.3 4.4E-08 1.5E-12 84.2 -0.6 138 11-156 121-276 (330)
111 1dce_A Protein (RAB geranylger 98.3 9.9E-08 3.4E-12 88.5 1.5 123 35-173 441-565 (567)
112 1dce_A Protein (RAB geranylger 98.3 6.4E-08 2.2E-12 89.8 0.1 124 11-150 441-567 (567)
113 4eco_A Uncharacterized protein 98.3 1.9E-07 6.5E-12 87.7 3.1 36 11-46 81-116 (636)
114 4ecn_A Leucine-rich repeat pro 98.3 3.2E-08 1.1E-12 96.1 -2.3 130 9-154 489-630 (876)
115 3j0a_A TOLL-like receptor 5; m 98.3 5.7E-09 1.9E-13 101.1 -7.7 137 10-155 23-160 (844)
116 4eco_A Uncharacterized protein 98.3 1.6E-08 5.3E-13 95.1 -5.0 81 9-93 247-337 (636)
117 3bz5_A Internalin-J, INLJ; leu 98.3 3.4E-07 1.2E-11 82.7 4.0 119 10-155 41-160 (457)
118 2v70_A SLIT-2, SLIT homolog 2 98.3 2.7E-08 9.1E-13 81.0 -3.4 135 10-156 31-166 (220)
119 2xot_A Amphoterin-induced prot 98.3 2.5E-08 8.5E-13 87.2 -4.3 132 11-154 39-174 (361)
120 3a79_B TLR6, VLRB.59, TOLL-lik 98.3 5.5E-08 1.9E-12 89.7 -2.2 129 32-175 350-480 (562)
121 3bz5_A Internalin-J, INLJ; leu 98.2 3.7E-07 1.3E-11 82.4 3.0 53 10-70 84-137 (457)
122 2ft3_A Biglycan; proteoglycan, 98.2 3E-08 1E-12 85.4 -4.3 56 98-156 222-277 (332)
123 3rw6_A Nuclear RNA export fact 98.2 2.9E-06 9.8E-11 71.2 7.8 31 119-149 221-257 (267)
124 2v9t_B SLIT homolog 2 protein 98.2 5.7E-08 2E-12 79.0 -3.0 129 34-175 31-159 (220)
125 3j0a_A TOLL-like receptor 5; m 98.2 3.7E-08 1.3E-12 95.4 -5.7 132 33-174 22-154 (844)
126 1ogq_A PGIP-2, polygalacturona 98.2 9.7E-09 3.3E-13 88.1 -8.8 58 11-70 50-111 (313)
127 4g8a_A TOLL-like receptor 4; l 98.2 1.1E-07 3.7E-12 88.1 -2.6 129 35-175 52-180 (635)
128 2xwt_C Thyrotropin receptor; s 98.1 2.5E-08 8.5E-13 81.9 -7.5 155 9-175 53-212 (239)
129 2wfh_A SLIT homolog 2 protein 98.1 2.3E-07 7.7E-12 74.0 -1.7 108 34-154 30-137 (193)
130 2xot_A Amphoterin-induced prot 98.1 1.5E-07 5E-12 82.2 -3.5 130 34-174 38-169 (361)
131 2o6r_A Variable lymphocyte rec 98.0 2.5E-07 8.4E-12 72.3 -2.9 111 34-156 27-137 (177)
132 1w8a_A SLIT protein; signaling 98.0 1.1E-07 3.8E-12 75.6 -5.3 110 35-155 29-138 (192)
133 3g06_A SSPH2 (leucine-rich rep 97.9 3.4E-06 1.2E-10 79.1 2.6 53 115-174 238-290 (622)
134 3g06_A SSPH2 (leucine-rich rep 97.9 2.9E-06 9.9E-11 79.5 1.2 39 116-156 259-297 (622)
135 2o6r_A Variable lymphocyte rec 97.8 9.8E-07 3.4E-11 68.9 -2.8 111 10-131 27-137 (177)
136 3sb4_A Hypothetical leucine ri 97.8 2.6E-06 9E-11 73.2 -0.7 90 74-175 214-304 (329)
137 4b8c_D Glucose-repressible alc 97.7 4.2E-06 1.4E-10 79.8 0.2 110 31-156 220-329 (727)
138 1w8a_A SLIT protein; signaling 97.7 7.3E-07 2.5E-11 70.8 -4.4 111 10-131 28-139 (192)
139 4b8c_D Glucose-repressible alc 97.7 1.8E-06 6E-11 82.4 -3.4 109 10-133 223-331 (727)
140 2wfh_A SLIT homolog 2 protein 97.6 2.6E-06 9E-11 67.7 -2.4 108 10-130 30-138 (193)
141 3cvr_A Invasion plasmid antige 97.6 6.8E-06 2.3E-10 76.2 -0.5 14 118-131 180-193 (571)
142 1jl5_A Outer protein YOPM; leu 97.6 7.7E-06 2.6E-10 73.7 -0.2 16 116-131 193-208 (454)
143 3cvr_A Invasion plasmid antige 97.5 1.1E-05 3.8E-10 74.8 -0.2 38 117-156 206-243 (571)
144 3sb4_A Hypothetical leucine ri 97.4 1.5E-05 5.1E-10 68.4 -0.8 124 34-174 201-327 (329)
145 1jl5_A Outer protein YOPM; leu 97.3 6.8E-05 2.3E-09 67.4 2.4 53 11-70 215-267 (454)
146 3g39_A Variable lymphocyte rec 97.1 5.1E-05 1.7E-09 58.9 -1.4 38 116-154 76-113 (170)
147 4ay9_X Follicle-stimulating ho 97.0 1.7E-06 6E-11 75.0 -11.1 36 118-154 177-213 (350)
148 2r9u_A Variable lymphocyte rec 97.0 6.6E-05 2.3E-09 58.5 -1.6 84 35-154 33-116 (174)
149 3rw6_A Nuclear RNA export fact 96.9 0.001 3.5E-08 55.6 4.9 91 25-124 160-257 (267)
150 2r9u_A Variable lymphocyte rec 96.7 0.00011 3.7E-09 57.3 -2.0 59 115-175 54-112 (174)
151 4fdw_A Leucine rich hypothetic 96.7 0.00014 4.7E-09 64.5 -1.8 58 116-175 269-330 (401)
152 2ifg_A High affinity nerve gro 96.4 0.00018 6.1E-09 61.9 -2.8 89 31-131 27-116 (347)
153 4fdw_A Leucine rich hypothetic 96.4 0.00063 2.2E-08 60.2 0.3 51 10-69 202-257 (401)
154 3g39_A Variable lymphocyte rec 96.0 0.0011 3.9E-08 51.1 0.2 59 115-175 51-109 (170)
155 4ay9_X Follicle-stimulating ho 95.5 0.00012 4E-09 63.4 -8.3 55 115-175 199-253 (350)
156 2ifg_A High affinity nerve gro 95.0 0.002 6.7E-08 55.2 -2.0 36 116-153 78-113 (347)
157 4gt6_A Cell surface protein; l 93.4 0.019 6.4E-07 50.1 0.7 119 32-175 262-385 (394)
158 4gt6_A Cell surface protein; l 92.8 0.03 1E-06 48.9 1.2 118 35-175 242-364 (394)
159 4h09_A Hypothetical leucine ri 90.1 0.08 2.7E-06 45.6 1.0 124 33-175 215-340 (379)
160 4fs7_A Uncharacterized protein 89.5 0.066 2.2E-06 46.6 -0.0 54 116-175 318-373 (394)
161 4fs7_A Uncharacterized protein 87.9 0.17 5.9E-06 43.9 1.5 55 115-175 159-215 (394)
162 4h09_A Hypothetical leucine ri 85.3 0.057 2E-06 46.6 -3.0 140 10-171 216-359 (379)
163 3rfe_A Platelet glycoprotein I 68.6 1.3 4.3E-05 32.2 0.5 36 118-154 31-66 (130)
164 3rfe_A Platelet glycoprotein I 60.4 6.1 0.00021 28.4 2.9 38 35-73 31-68 (130)
165 2lz0_A Uncharacterized protein 42.0 9 0.00031 26.3 1.2 34 32-69 17-52 (100)
166 4fp9_B Mterf domain-containing 30.2 11 0.00037 32.1 0.0 16 130-145 161-176 (335)
No 1
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=7.9e-17 Score=139.38 Aligned_cols=158 Identities=20% Similarity=0.176 Sum_probs=117.8
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+++|++|+++++ .++..+..+...+++|++|+|++|.+++.....+. ++++|++|+|++|..+++.++..+...+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 477888888887 45555777777888888888888888877666664 5888888888888778887777777778887
Q ss_pred hhhcccCeecccCCC-CcCcHHHHHHHhcCC-CCcEEEecCc--ccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH
Q 025444 89 VVLCRNMHPLDTADK-LSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 164 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~-~~~~~~~~~l~~~~~-~L~~L~L~~~--~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~ 164 (252)
+.| ++++| .+++.++..+...+| +|++|+|++| .+++.++..++.++++|++|+|++|..++...-...
T Consensus 171 ~~L-------~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 171 DEL-------NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp CEE-------ECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred CEE-------cCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 766 55666 666666666666788 8888888888 578777877778888888888888876643332223
Q ss_pred hcCCCCceecc
Q 025444 165 GNFPNLKVLGP 175 (252)
Q Consensus 165 ~~~~~L~~L~~ 175 (252)
..+++|+.|..
T Consensus 244 ~~l~~L~~L~l 254 (336)
T 2ast_B 244 FQLNYLQHLSL 254 (336)
T ss_dssp GGCTTCCEEEC
T ss_pred hCCCCCCEeeC
Confidence 45677777765
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=8e-17 Score=142.45 Aligned_cols=160 Identities=16% Similarity=0.144 Sum_probs=108.3
Q ss_pred HcCCCccEEEecCC-CCHHHHHHHH---HhC---------CCCcEEEccCCCCCHHHHHH---HHhcCCCccEEeccCCC
Q 025444 8 RSSGSLRKLCVSGL-HNDMMFSLIA---ENA---------GSLQTLRLPRSEMSDSIVAQ---IAGRLSAVTFLDLSYCS 71 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d~~l~~i~---~~~---------~~L~~L~L~~~~i~~~~l~~---l~~~~~~L~~L~Ls~c~ 71 (252)
..+++|++|+++++ .++.....++ ..+ ++|++|+|++|.+++.++.. .+..+++|++|++++|
T Consensus 119 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n- 197 (386)
T 2ca6_A 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQN- 197 (386)
T ss_dssp HHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSS-
T ss_pred HhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCC-
Confidence 45788999999987 3333333332 334 88999999999888666554 4457889999999986
Q ss_pred CCCHHHHHHHHh----hCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhc---
Q 025444 72 KIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS--- 141 (252)
Q Consensus 72 ~i~~~~l~~l~~----~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~--- 141 (252)
.+++.++..+.. .+++|+.| +++++.+++.++..++ ..+++|++|+|++|.|++.+...+...
T Consensus 198 ~l~~~g~~~l~~~~l~~~~~L~~L-------~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 198 GIRPEGIEHLLLEGLAYCQELKVL-------DLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp CCCHHHHHHHHHTTGGGCTTCCEE-------ECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred CCCHhHHHHHHHHHhhcCCCccEE-------ECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 688877766665 44445444 6667777666555443 467888888888888888776655442
Q ss_pred --CCCCCEEeccCCCCccC----ChHHHHhcCCCCceecc
Q 025444 142 --CALLEFLDLRGCWDVKL----DDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 142 --~~~L~~LdL~~C~~i~~----~~~~l~~~~~~L~~L~~ 175 (252)
+++|++|+|++|..... -...+...+++|+.|..
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l 310 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEc
Confidence 78888888888743311 11233355788888864
No 3
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.71 E-value=8e-17 Score=149.46 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=120.9
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccC----------C-CCCHHHHHHHHhcCCCccEEeccCCCCCCHH
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP 76 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~----------~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~ 76 (252)
..+++|++|+++++.++..+..++..+++|++|+|.+ | .+++.++..++..|++|++|++ +|+.+++.
T Consensus 315 ~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~ 393 (592)
T 3ogk_B 315 QKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNE 393 (592)
T ss_dssp TTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHH
T ss_pred HhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHH
Confidence 4567777777776666666777777777788888773 4 7777777777777777888877 44677777
Q ss_pred HHHHHHhhCchhhhhccc--------------------------CeecccCCCC--cCcHHHHHHHhcCCCCcEEEecCc
Q 025444 77 ALEAIGKHCKLLVVLCRN--------------------------MHPLDTADKL--SQDDEANAIASTMPKLKRLEMAYH 128 (252)
Q Consensus 77 ~l~~l~~~~~~L~~L~~~--------------------------l~~l~l~~~~--~~~~~~~~l~~~~~~L~~L~L~~~ 128 (252)
++..++..|++|+.|.+. ++.++++.|. +++..+..++..+++|++|+|++|
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n 473 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV 473 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC
Confidence 777777777777777552 1223343333 567777788877899999999988
Q ss_pred ccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc
Q 025444 129 VISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP 175 (252)
Q Consensus 129 ~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~ 175 (252)
.+++.++..++.+|++|++|+|++|. ++..+ ..+...+++|+.|..
T Consensus 474 ~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 474 GESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp CSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEE
T ss_pred CCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeEC
Confidence 89988888888899999999999987 53222 344567888888865
No 4
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=1.5e-16 Score=140.65 Aligned_cols=138 Identities=15% Similarity=0.139 Sum_probs=86.2
Q ss_pred cCCCccEEEecCC-CCHH---HHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh---cC---------CCccEEeccCCCC
Q 025444 9 SSGSLRKLCVSGL-HNDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG---RL---------SAVTFLDLSYCSK 72 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~---~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~---~~---------~~L~~L~Ls~c~~ 72 (252)
.+++|++|+++++ .++. .+......+++|++|+|++|.+++.+...+.. .+ ++|++|+|++| .
T Consensus 92 ~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~ 170 (386)
T 2ca6_A 92 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-R 170 (386)
T ss_dssp TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-C
T ss_pred hCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-C
Confidence 4677788887775 3332 23333456777888888777776655444432 23 77888888775 4
Q ss_pred CCHHHHHHHHh---hCchhhhhcccCeecccCCCCcCcHHHHHHHh----cCCCCcEEEecCcccCHHHHHHH---HhcC
Q 025444 73 IGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSC 142 (252)
Q Consensus 73 i~~~~l~~l~~---~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~----~~~~L~~L~L~~~~it~~~l~~i---~~~~ 142 (252)
++..++..++. .+++|+.| .++++.+.+.++.+++. .+++|++|+|++|.+++.++..+ +..+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L-------~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~ 243 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTV-------KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 243 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEE-------ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGC
T ss_pred CCcHHHHHHHHHHHhCCCcCEE-------ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccC
Confidence 66555555444 34444443 56666666666555443 57778888888777776554433 4567
Q ss_pred CCCCEEeccCCC
Q 025444 143 ALLEFLDLRGCW 154 (252)
Q Consensus 143 ~~L~~LdL~~C~ 154 (252)
++|++|+|++|.
T Consensus 244 ~~L~~L~L~~n~ 255 (386)
T 2ca6_A 244 PNLRELGLNDCL 255 (386)
T ss_dssp TTCCEEECTTCC
T ss_pred CCcCEEECCCCC
Confidence 778888887764
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.70 E-value=1.8e-16 Score=137.10 Aligned_cols=160 Identities=20% Similarity=0.339 Sum_probs=127.7
Q ss_pred HHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhh
Q 025444 7 TRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH 84 (252)
Q Consensus 7 ~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~ 84 (252)
...+++|++|+++++ .++.....++ .+++|++|+|++| .+++.++..++..+++|++|+|++|..+++.++..+...
T Consensus 114 ~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 356899999999998 5566566565 5999999999999 899988999888999999999999878998888888888
Q ss_pred Cc-hhhhhcccCeecccCCC--CcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh
Q 025444 85 CK-LLVVLCRNMHPLDTADK--LSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD 160 (252)
Q Consensus 85 ~~-~L~~L~~~l~~l~l~~~--~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~ 160 (252)
+| +|+.| +++++ .+++..+..+...+|+|++|+|++|. +++..+..+ ..+++|++|+|++|..++..+
T Consensus 193 l~~~L~~L-------~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~ 264 (336)
T 2ast_B 193 VSETITQL-------NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPET 264 (336)
T ss_dssp SCTTCCEE-------ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGG
T ss_pred cccCCCEE-------EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHH
Confidence 88 88877 55565 45566777777789999999999999 887776654 478999999999998663333
Q ss_pred HHHHhcCCCCceecc
Q 025444 161 KFMKGNFPNLKVLGP 175 (252)
Q Consensus 161 ~~l~~~~~~L~~L~~ 175 (252)
-.....+++|+.|..
T Consensus 265 ~~~l~~~~~L~~L~l 279 (336)
T 2ast_B 265 LLELGEIPTLKTLQV 279 (336)
T ss_dssp GGGGGGCTTCCEEEC
T ss_pred HHHHhcCCCCCEEec
Confidence 212356888888876
No 6
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=4.9e-16 Score=144.16 Aligned_cols=168 Identities=14% Similarity=0.165 Sum_probs=127.3
Q ss_pred HHHcCCCccEEEecC----------C--CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEecc---CC
Q 025444 6 ITRSSGSLRKLCVSG----------L--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS---YC 70 (252)
Q Consensus 6 i~~~~~~L~~L~l~~----------~--~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls---~c 70 (252)
+...|++|++|++++ | .++..+..++..+++|++|.+..+.+++.++..++..+++|++|+++ .|
T Consensus 337 ~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 337 LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 345677788888873 3 55666777777778888888765677777777777667777777776 34
Q ss_pred CCCCH----HHHHHHHhhCchhhhhccc--------------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEec
Q 025444 71 SKIGA----PALEAIGKHCKLLVVLCRN--------------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMA 126 (252)
Q Consensus 71 ~~i~~----~~l~~l~~~~~~L~~L~~~--------------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~ 126 (252)
+.+++ .++..+...|++|+.|.+. ++.+.++++.+++.++..++..|++|++|+|+
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 55664 4566666667776666541 34557788888888888888899999999999
Q ss_pred CcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceec
Q 025444 127 YHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLG 174 (252)
Q Consensus 127 ~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~ 174 (252)
+|.+++.++..++..+++|++|+|++|. ++..+ ..+.+.+|.++...
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l~~~~ 544 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYWNIEL 544 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTEEEEE
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCcEEEE
Confidence 9999999999999999999999999997 65554 56677788776653
No 7
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.4e-15 Score=141.08 Aligned_cols=141 Identities=20% Similarity=0.186 Sum_probs=76.4
Q ss_pred HHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEecc-----CCCCCC----HHHHHHHHhhCchhhhhcccCe
Q 025444 26 MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLCRNMH 96 (252)
Q Consensus 26 ~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls-----~c~~i~----~~~l~~l~~~~~~L~~L~~~l~ 96 (252)
.+..++..+++|++|.+..+.+++.++..++..+++|+.|+|+ +|..++ +.++..+...|++|+.|
T Consensus 363 ~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L----- 437 (594)
T 2p1m_B 363 GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRL----- 437 (594)
T ss_dssp HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEE-----
T ss_pred HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEE-----
Confidence 3333333344444443333344444444444444444444444 344444 34444444444444444
Q ss_pred ecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh-HHHHhcCCCCceecc
Q 025444 97 PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP 175 (252)
Q Consensus 97 ~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~-~~l~~~~~~L~~L~~ 175 (252)
++++ .+++.++..++..+++|++|+|++|.+++.++..++.+|++|++|+|++|.. +..+ ..+...+++|+.|..
T Consensus 438 --~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 438 --SLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWM 513 (594)
T ss_dssp --ECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEE
T ss_pred --eecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEee
Confidence 3333 4556666666666777777777777777777777777777777777777754 2212 223445666666654
No 8
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=1.2e-15 Score=141.51 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=134.1
Q ss_pred HHHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEcc-----CC-CCC----HHHHHHHHhcCCCccEEeccCCCCCC
Q 025444 6 ITRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLP-----RS-EMS----DSIVAQIAGRLSAVTFLDLSYCSKIG 74 (252)
Q Consensus 6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~-----~~-~i~----~~~l~~l~~~~~~L~~L~Ls~c~~i~ 74 (252)
+...|++|+.|.++.. .++..+..++..+++|+.|+|. +| .++ +.++..++..|++|+.|+|++ .++
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~ 444 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLT 444 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCC
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--ccc
Confidence 3455788888866553 6788888898899999999999 44 888 789999999999999999977 799
Q ss_pred HHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 75 APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 75 ~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
+.++..++..+++|+.| +++++.+++.++.+++..+++|++|+|++|.+++.++..++..+++|++|+|++|.
T Consensus 445 ~~~~~~l~~~~~~L~~L-------~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEML-------SVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHHHCTTCCEE-------EEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHHHHhchhccEe-------eccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 99999999989998877 55677788888989988999999999999999999999899899999999999997
Q ss_pred CccCCh-HHHHhcCCCCceec
Q 025444 155 DVKLDD-KFMKGNFPNLKVLG 174 (252)
Q Consensus 155 ~i~~~~-~~l~~~~~~L~~L~ 174 (252)
. +..+ +.+.+.+|++++..
T Consensus 518 ~-~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 518 V-SFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp C-BHHHHHHHHHHCTTEEEEE
T ss_pred C-CHHHHHHHHHhCCCCEEEE
Confidence 6 3333 55667788886643
No 9
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.61 E-value=6.9e-16 Score=121.94 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=84.9
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
.+|++|+|++|.|++.|+..+ ..|++|++|+|++|..||+.++..|+.. +
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~----~------------------------- 110 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL----E------------------------- 110 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC----H-------------------------
T ss_pred ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc----c-------------------------
Confidence 368888888888888888777 5788888888888888888888877751 0
Q ss_pred hcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCCh---HHHHhcCCCCce
Q 025444 115 STMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKV 172 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~---~~l~~~~~~L~~ 172 (252)
..+++|++|+|++|. ||+.++..+. .|++|++|+|++|+.++..+ ..+.+..|++++
T Consensus 111 ~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 111 NLQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred cccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 024568899999998 9999998876 68999999999999997654 456778888776
No 10
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.51 E-value=2.1e-14 Score=113.37 Aligned_cols=102 Identities=12% Similarity=0.163 Sum_probs=82.0
Q ss_pred CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhC
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHC 85 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~ 85 (252)
-+|++|++++| +++..+..+. .|++|++|+|++| .|||.++..++.. +++|++|+|++|+.||+.++..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~--- 136 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH--- 136 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG---
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh---
Confidence 46999999998 8888888884 8999999999999 8999999999863 678999999999999999987764
Q ss_pred chhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHH--HHHHhcCCCCC
Q 025444 86 KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIV--LKILSSCALLE 146 (252)
Q Consensus 86 ~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l--~~i~~~~~~L~ 146 (252)
.|++|++|+|++|. ||+.++ ..+-+.+|+++
T Consensus 137 ------------------------------~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 ------------------------------HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp ------------------------------GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred ------------------------------cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 35666777777777 776553 33444666654
No 11
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=120.86 Aligned_cols=140 Identities=12% Similarity=0.123 Sum_probs=74.2
Q ss_pred HHHcCCCccEEEecCC-CCHHHHHHHHHh----CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH
Q 025444 6 ITRSSGSLRKLCVSGL-HNDMMFSLIAEN----AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA 80 (252)
Q Consensus 6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~----~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~ 80 (252)
+....++|+.|+++++ +++.....++.. +++|++|+|++|.+++.++..++..+++|++|+|++| .+++.++..
T Consensus 67 ~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~ 145 (372)
T 3un9_A 67 SAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKD 145 (372)
T ss_dssp HHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHH
T ss_pred HHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHH
Confidence 3334456666666665 343333333222 2466666666666666666666655666666666664 466666555
Q ss_pred HHhh----CchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHH---hcCCCCCEEec
Q 025444 81 IGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDL 150 (252)
Q Consensus 81 l~~~----~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~---~~~~~L~~LdL 150 (252)
++.. +++|+.| ++++|.+++.++.+++ ..+++|++|+|++|.|++.++..+. ..+++|+.|+|
T Consensus 146 L~~~L~~~~~~L~~L-------~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~L 218 (372)
T 3un9_A 146 LRDLLLHDQCQITTL-------RLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHHSTTCCCCEE-------ECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEEC
T ss_pred HHHHHHhcCCcccee-------eCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEEC
Confidence 5442 2333333 4455555554444443 2355566666666555555544333 24455666666
Q ss_pred cCC
Q 025444 151 RGC 153 (252)
Q Consensus 151 ~~C 153 (252)
++|
T Consensus 219 s~N 221 (372)
T 3un9_A 219 AYN 221 (372)
T ss_dssp CSS
T ss_pred CCC
Confidence 555
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.47 E-value=2.2e-13 Score=120.33 Aligned_cols=149 Identities=13% Similarity=0.099 Sum_probs=117.4
Q ss_pred HHHcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh----cCCCccEEeccCCCCCCHHHHHH
Q 025444 6 ITRSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEA 80 (252)
Q Consensus 6 i~~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~----~~~~L~~L~Ls~c~~i~~~~l~~ 80 (252)
+...+.+|++|+++++ +++..+..++..+++|++|+|++|.+++.++..++. .+++|++|+|++| .+++.++..
T Consensus 96 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~ 174 (372)
T 3un9_A 96 LGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN-PLTAAGVAV 174 (372)
T ss_dssp HSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS-CCHHHHHHH
T ss_pred HhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC-CCChHHHHH
Confidence 3334579999999998 678778888888889999999999999988777754 3689999999997 689888888
Q ss_pred HHhhCchhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444 81 IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW 154 (252)
Q Consensus 81 l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~ 154 (252)
++..+...+.| +.++++++.+.+.++..++ ..+++|++|+|++|.|++.++..++. .+++|++|+|++|.
T Consensus 175 l~~~L~~~~~L----~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 175 LMEGLAGNTSV----THLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHTCSSC----CEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHhcCCCc----CEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 87543322222 4447888888888877665 35789999999999999988766654 67999999999984
Q ss_pred CccCCh
Q 025444 155 DVKLDD 160 (252)
Q Consensus 155 ~i~~~~ 160 (252)
++..+
T Consensus 251 -i~~~g 255 (372)
T 3un9_A 251 -LSSEG 255 (372)
T ss_dssp -CCHHH
T ss_pred -CCHHH
Confidence 54333
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=1.9e-12 Score=116.38 Aligned_cols=137 Identities=15% Similarity=0.135 Sum_probs=85.1
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHH----hCCCCcEEEccCCCCCHHHHHHH---HhcCCCccEEeccCCCCCCHHHHHH
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAE----NAGSLQTLRLPRSEMSDSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEA 80 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~----~~~~L~~L~L~~~~i~~~~l~~l---~~~~~~L~~L~Ls~c~~i~~~~l~~ 80 (252)
.+++|++|+++++ .++..+..++. .+++|++|+|++|.++..++..+ ..++++|++|+|++| .+++.++..
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~ 303 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARL 303 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC-CCchHHHHH
Confidence 5788999999987 44545554443 47889999999998888774443 445889999999985 578777777
Q ss_pred HHhhC----chhhhhcccCeecccCCCCcCcHHHHHHH---hcCCCCcEEEecCcccCHHHHHHHHhc----CCCCCEEe
Q 025444 81 IGKHC----KLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS----CALLEFLD 149 (252)
Q Consensus 81 l~~~~----~~L~~L~~~l~~l~l~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~it~~~l~~i~~~----~~~L~~Ld 149 (252)
++..+ ++|+.| ++++|.+++.++.+++ ..+++|++|+|++|.+++.++..+... +++|++|+
T Consensus 304 l~~~l~~~~~~L~~L-------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 304 LCETLLEPGCQLESL-------WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHTSTTCCCCEE-------ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHhccCCccceee-------EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 66542 355555 4444444444333222 234555555555555555544444331 44555555
Q ss_pred ccCC
Q 025444 150 LRGC 153 (252)
Q Consensus 150 L~~C 153 (252)
|++|
T Consensus 377 L~~n 380 (461)
T 1z7x_W 377 LADC 380 (461)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 5555
No 14
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.41 E-value=3.2e-12 Score=114.86 Aligned_cols=162 Identities=15% Similarity=0.164 Sum_probs=90.3
Q ss_pred HcCCCccEEEecCC-CCHHH---HHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHH
Q 025444 8 RSSGSLRKLCVSGL-HNDMM---FSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALE 79 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d~~---l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~Ls~c~~i~~~~l~ 79 (252)
..+++|++|+++++ .++.. +......+++|++|+|++|.+++.++..++..++ +|++|+|++| .++..++.
T Consensus 25 ~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~ 103 (461)
T 1z7x_W 25 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG 103 (461)
T ss_dssp HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence 34566777777665 34332 3333345667777777776666666666665555 5777777765 36655544
Q ss_pred HHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc----CCCCcEEEecCcccCHHHH---HHHHhcCCCCCEEeccC
Q 025444 80 AIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST----MPKLKRLEMAYHVISTEIV---LKILSSCALLEFLDLRG 152 (252)
Q Consensus 80 ~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~it~~~l---~~i~~~~~~L~~LdL~~ 152 (252)
.+.....+++.| +.++++++.+.+.++.+++.. .++|++|++++|.++..++ ...+..+++|++|++++
T Consensus 104 ~l~~~l~~~~~L----~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 179 (461)
T 1z7x_W 104 VLSSTLRTLPTL----QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179 (461)
T ss_dssp HHHHHTTSCTTC----CEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHccCCce----eEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence 444333222222 334566666666655555543 3567777777777666443 33344677777777777
Q ss_pred CCCccCCh-HHHH----hcCCCCceecc
Q 025444 153 CWDVKLDD-KFMK----GNFPNLKVLGP 175 (252)
Q Consensus 153 C~~i~~~~-~~l~----~~~~~L~~L~~ 175 (252)
|. ++..+ ..+. ...++|+.|..
T Consensus 180 n~-i~~~~~~~l~~~l~~~~~~L~~L~L 206 (461)
T 1z7x_W 180 ND-INEAGVRVLCQGLKDSPCQLEALKL 206 (461)
T ss_dssp SB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred CC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence 64 32221 2222 23456777654
No 15
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.40 E-value=5.7e-12 Score=100.49 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHh---cCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444 24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD 99 (252)
Q Consensus 24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~ 99 (252)
...+..+...+++|++|+|++| .|++.++..++. .+++|++|+|++| .|++.++..++..++..+.| +.++
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L----~~L~ 99 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTL----KSLN 99 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSC----CEEE
T ss_pred HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCc----CEEE
Confidence 4456777778999999999999 999988777754 4689999999996 69999988888764433333 5568
Q ss_pred cCCCCcCcHHHHHHHhc---CCCCcEEEe--cCcccCHHHHHHHH---hcCCCCCEEeccCCC
Q 025444 100 TADKLSQDDEANAIAST---MPKLKRLEM--AYHVISTEIVLKIL---SSCALLEFLDLRGCW 154 (252)
Q Consensus 100 l~~~~~~~~~~~~l~~~---~~~L~~L~L--~~~~it~~~l~~i~---~~~~~L~~LdL~~C~ 154 (252)
++++.+.+.++.+++.. .++|++|+| ++|.|++.++..+. +.++.|++|+|++|.
T Consensus 100 L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 100 VESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 88999999999888754 578999999 88999999866554 477999999999974
No 16
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.31 E-value=7.9e-12 Score=109.53 Aligned_cols=141 Identities=14% Similarity=0.153 Sum_probs=67.6
Q ss_pred CccEEEecCC-CCH---HHHHHHHHh-CCCCcEEEccCCCCCHH---HHHHHHhcC-CCccEEeccCCCCCCHHHHHHHH
Q 025444 12 SLRKLCVSGL-HND---MMFSLIAEN-AGSLQTLRLPRSEMSDS---IVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIG 82 (252)
Q Consensus 12 ~L~~L~l~~~-~~d---~~l~~i~~~-~~~L~~L~L~~~~i~~~---~l~~l~~~~-~~L~~L~Ls~c~~i~~~~l~~l~ 82 (252)
+|++|+++++ .++ ..+..+... +++|++|+|++|.+++. .+......+ ++|++|+|++| .++..+...++
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~ 130 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFK 130 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHH
Confidence 6666666665 222 222222222 26666666666655432 233333334 56666666664 34544444433
Q ss_pred hh----Cchhhhhcc----------------------cCeecccCCCCcCcHHHHHHH---hcC-CCCcEEEecCcccCH
Q 025444 83 KH----CKLLVVLCR----------------------NMHPLDTADKLSQDDEANAIA---STM-PKLKRLEMAYHVIST 132 (252)
Q Consensus 83 ~~----~~~L~~L~~----------------------~l~~l~l~~~~~~~~~~~~l~---~~~-~~L~~L~L~~~~it~ 132 (252)
.. +++|+.|.+ +++.++++++.+++.+..+++ ..+ ++|++|+|++|.|++
T Consensus 131 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 131 QAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 32 234444421 233345555555444443332 233 366666666666655
Q ss_pred HHHHHHHh---c-CCCCCEEeccCC
Q 025444 133 EIVLKILS---S-CALLEFLDLRGC 153 (252)
Q Consensus 133 ~~l~~i~~---~-~~~L~~LdL~~C 153 (252)
.++..+.. . +++|++|+|++|
T Consensus 211 ~~~~~l~~~l~~~~~~L~~L~Ls~N 235 (362)
T 3goz_A 211 KSYAELAYIFSSIPNHVVSLNLCLN 235 (362)
T ss_dssp SCHHHHHHHHHHSCTTCCEEECCSS
T ss_pred hHHHHHHHHHhcCCCCceEEECcCC
Confidence 43332222 2 346666666665
No 17
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=4.2e-11 Score=104.89 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=86.2
Q ss_pred HHcCCCccEEEecCC-CCH---HHHHHHHHhCC-CCcEEEccCCCCCHHH---HHHHHhcC-CCccEEeccCCCCCCHHH
Q 025444 7 TRSSGSLRKLCVSGL-HND---MMFSLIAENAG-SLQTLRLPRSEMSDSI---VAQIAGRL-SAVTFLDLSYCSKIGAPA 77 (252)
Q Consensus 7 ~~~~~~L~~L~l~~~-~~d---~~l~~i~~~~~-~L~~L~L~~~~i~~~~---l~~l~~~~-~~L~~L~Ls~c~~i~~~~ 77 (252)
....++|++|+++++ .++ ..+......++ +|++|+|++|.+++.+ +..+...+ ++|++|+|++|. ++..+
T Consensus 18 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~ 96 (362)
T 3goz_A 18 TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKS 96 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred HhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHH
Confidence 344567999999997 332 22334445677 9999999999887644 44444444 999999999974 66555
Q ss_pred HHHHHh---hC-chhhhhcc----------------------cCeecccCCCCcCcHHHHHHHh---cCC-CCcEEEecC
Q 025444 78 LEAIGK---HC-KLLVVLCR----------------------NMHPLDTADKLSQDDEANAIAS---TMP-KLKRLEMAY 127 (252)
Q Consensus 78 l~~l~~---~~-~~L~~L~~----------------------~l~~l~l~~~~~~~~~~~~l~~---~~~-~L~~L~L~~ 127 (252)
...++. .+ ++|+.|.+ +++.++++++.+.+.++..++. .++ +|++|+|++
T Consensus 97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 444443 33 56666632 3344455555555444433321 233 566666666
Q ss_pred cccCHHHH---HHHHhcC-CCCCEEeccCCC
Q 025444 128 HVISTEIV---LKILSSC-ALLEFLDLRGCW 154 (252)
Q Consensus 128 ~~it~~~l---~~i~~~~-~~L~~LdL~~C~ 154 (252)
|.+++.+. ...+..+ ++|+.|+|++|.
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 207 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANL 207 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCC
Confidence 65543332 2233344 366666666653
No 18
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.22 E-value=2.6e-10 Score=90.81 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=97.1
Q ss_pred cCCCccEEEecCC--CCHHHHHHHH---HhCCCCcEEEccCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHH
Q 025444 9 SSGSLRKLCVSGL--HNDMMFSLIA---ENAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEA 80 (252)
Q Consensus 9 ~~~~L~~L~l~~~--~~d~~l~~i~---~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l~~ 80 (252)
.+++|++|+++++ +++.....++ ..+++|++|+|++|.|++.|...++ ...++|++|+|++| .|++.++.+
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHHHHHH
Confidence 4789999999986 5666555554 4578999999999999998876665 44689999999995 699999999
Q ss_pred HHhhCchhhhhcccCeeccc--CCCCcCcHHHHHHHh---cCCCCcEEEecCcccCHHH
Q 025444 81 IGKHCKLLVVLCRNMHPLDT--ADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTEI 134 (252)
Q Consensus 81 l~~~~~~L~~L~~~l~~l~l--~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~it~~~ 134 (252)
++..+...+.| +.+++ .++.+.+.++.++++ ..++|++|+|++|.|++.+
T Consensus 113 l~~~L~~n~~L----~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 113 LVEALQSNTSL----IELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp HHHGGGGCSSC----CEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred HHHHHHhCCCc----eEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 98876544433 55677 778899998877764 4689999999999998876
No 19
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.20 E-value=2e-12 Score=98.94 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=36.2
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~ 175 (252)
..+++|++|++++|.++.......+..+++|++|++++|.-..... ......+++|+.|..
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 3567777777777776654433445567777777777764332222 134456677776653
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.13 E-value=3e-11 Score=106.23 Aligned_cols=159 Identities=14% Similarity=0.098 Sum_probs=91.9
Q ss_pred CCCccEEEecCCCC---------HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH
Q 025444 10 SGSLRKLCVSGLHN---------DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE 79 (252)
Q Consensus 10 ~~~L~~L~l~~~~~---------d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~ 79 (252)
.++|+.|.+..... ...+..+...+|+|++|+|.++ .+.- ..+ .+++|++|.|..| .++..++.
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~~~l~ 211 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPDSVVE 211 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCChHHHH
Confidence 46888888865311 1125566677888888888877 2321 111 3788888888865 57888887
Q ss_pred HHHh-hCchhhhhcccCeecccCCCCcCcHHHHHHH-hcCCCCcEEEecCcccCHHHHHHHHh--cCCCCCEEeccCCCC
Q 025444 80 AIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIA-STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCWD 155 (252)
Q Consensus 80 ~l~~-~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~it~~~l~~i~~--~~~~L~~LdL~~C~~ 155 (252)
.++. .+|+|+.|.+....-...+..........+. ..+|+|++|.|++|.+++.+...++. .+|+|++|+|+.+ .
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~ 290 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-V 290 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-C
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-C
Confidence 7775 5788888765321111111110000001111 24678888888777777766555554 4677888888664 4
Q ss_pred ccCCh-HHHH---hcCCCCceecc
Q 025444 156 VKLDD-KFMK---GNFPNLKVLGP 175 (252)
Q Consensus 156 i~~~~-~~l~---~~~~~L~~L~~ 175 (252)
++..+ ..+. +.+++|+.|..
T Consensus 291 L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 291 LTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred CChHHHHHHHhhcccCCcceEEEC
Confidence 53322 2332 34566666654
No 21
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=2.8e-12 Score=100.05 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=61.4
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
++|++|+|++|.+++..+...+..+++|+.|++++|. ++.. .....+++|+.| +++++.+... +..+.
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L-------~Ls~N~l~~~-~~~~~ 91 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKL-------ELSENRIFGG-LDMLA 91 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEE-------EEESCCCCSC-CCHHH
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEE-------ECcCCcCchH-HHHHH
Confidence 4566666666555422232233445566666666543 3321 111123334333 2333332221 11222
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~ 175 (252)
..+++|++|+|++|.++.......+..+++|+.|++++|.-..... ......+++|+.|..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence 3567777777777776553222334466777777777764332222 123455666666654
No 22
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.09 E-value=2.9e-11 Score=92.33 Aligned_cols=133 Identities=16% Similarity=0.197 Sum_probs=96.0
Q ss_pred HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444 8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 86 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~ 86 (252)
...++|+.|+++++ .++..+......+++|+.|++++|.++.. .....+++|+.|++++|. ++.. +..+...++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~ 88 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKCP 88 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHCT
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhCC
Confidence 34578999999997 33223444446789999999999977764 444678999999999964 5542 344455677
Q ss_pred hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHH--HHHHhcCCCCCEEeccC
Q 025444 87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG 152 (252)
Q Consensus 87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l--~~i~~~~~~L~~LdL~~ 152 (252)
+|+.| +++++.+.+.........+++|++|++++|.++.... ...+..+++|+.|++++
T Consensus 89 ~L~~L-------~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHL-------NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEE-------ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEE-------ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 78777 5666666664333334589999999999999775432 24677899999999863
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=4.3e-11 Score=95.90 Aligned_cols=144 Identities=18% Similarity=0.226 Sum_probs=92.2
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+++|+.|+++++ +++ +.. ...+++|++|++++|.++.. . .+..+++|++|++++| .++......++ .+++|
T Consensus 43 l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINVTD--LTG-IEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-GLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCCSC--CTT-GGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-TCTTC
T ss_pred cCCccEEeccCCCccC--hHH-HhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-CCCCC
Confidence 457888888875 221 121 34678888888888866542 1 2356888888888885 45543333332 35555
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
+.| +++++.+.+.....+. .+++|++|+|++|. +++.. .+..+++|+.|++++|.-.... ....+
T Consensus 115 ~~L-------~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~~---~l~~l 180 (197)
T 4ezg_A 115 TLL-------DISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYR---GIEDF 180 (197)
T ss_dssp CEE-------ECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCCT---TGGGC
T ss_pred CEE-------EecCCccCcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcChH---HhccC
Confidence 554 5666666665555554 78888888888887 76542 3567888888888887533211 23556
Q ss_pred CCCceecc
Q 025444 168 PNLKVLGP 175 (252)
Q Consensus 168 ~~L~~L~~ 175 (252)
++|+.|..
T Consensus 181 ~~L~~L~l 188 (197)
T 4ezg_A 181 PKLNQLYA 188 (197)
T ss_dssp SSCCEEEE
T ss_pred CCCCEEEe
Confidence 77777754
No 24
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.01 E-value=5.1e-11 Score=92.82 Aligned_cols=137 Identities=18% Similarity=0.120 Sum_probs=96.8
Q ss_pred HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444 8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 86 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~ 86 (252)
...++|++|+++++ .++..+......+++|+.|+|++|.++.. ..+..+++|++|++++|. ++.. +..+...++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~ 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLP 95 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCC
Confidence 34578999999997 33223444446789999999999987763 444678999999999974 5432 344555688
Q ss_pred hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHH--HHHHhcCCCCCEEeccCCCCc
Q 025444 87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l--~~i~~~~~~L~~LdL~~C~~i 156 (252)
+|+.|.+ +++.+.+.........+++|++|++++|.++.... ...+..+++|++|++++|...
T Consensus 96 ~L~~L~L-------s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 96 NLTHLNL-------SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp TCCEEEC-------BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEec-------cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8887744 44444442221222479999999999999765432 246778999999999998654
No 25
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.99 E-value=6.7e-11 Score=94.77 Aligned_cols=128 Identities=16% Similarity=0.216 Sum_probs=93.1
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.+++|+.|+++++.- ..+..+ ..+++|++|+|++|.++......+ ..+++|+.|++++| .++......++ .+++|
T Consensus 64 ~l~~L~~L~l~~n~~-~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~Ls~n-~i~~~~~~~l~-~l~~L 138 (197)
T 4ezg_A 64 YAHNIKDLTINNIHA-TNYNPI-SGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLDISHS-AHDDSILTKIN-TLPKV 138 (197)
T ss_dssp GCTTCSEEEEESCCC-SCCGGG-TTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEECCSS-BCBGGGHHHHT-TCSSC
T ss_pred cCCCCCEEEccCCCC-Ccchhh-hcCCCCCEEEeECCccCcccChhh-cCCCCCCEEEecCC-ccCcHhHHHHh-hCCCC
Confidence 478999999999721 112222 468999999999998886544444 57899999999996 57765566664 57778
Q ss_pred hhhcccCeecccCCCC-cCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 89 VVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
+.|. ++++. +.+-. . ...+++|++|++++|.+++.. .+..+++|+.|++++..
T Consensus 139 ~~L~-------L~~n~~i~~~~--~-l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 139 NSID-------LSYNGAITDIM--P-LKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CEEE-------CCSCTBCCCCG--G-GGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECBC-
T ss_pred CEEE-------ccCCCCccccH--h-hcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeCcc
Confidence 7774 44443 33322 2 347999999999999987632 45689999999999853
No 26
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.99 E-value=6.1e-09 Score=83.52 Aligned_cols=125 Identities=7% Similarity=0.122 Sum_probs=96.5
Q ss_pred HHHHHHHHHhCCCCcEEEccCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecc
Q 025444 24 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD 99 (252)
Q Consensus 24 d~~l~~i~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~ 99 (252)
+..+..+....+.|++|+|+++ .|.+.|...++.. ...|+.|+|++| .|++.+..+|+..++.=++| ..++
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL----~~L~ 104 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSL----RVLN 104 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSC----CEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCcc----CeEe
Confidence 4567777778899999999986 9999887777654 578999999995 69999988888754443333 5668
Q ss_pred cCCCCcCcHHHHHHHhcC---CCCcEEEecCc---ccCHHHHHHH---HhcCCCCCEEeccCC
Q 025444 100 TADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGC 153 (252)
Q Consensus 100 l~~~~~~~~~~~~l~~~~---~~L~~L~L~~~---~it~~~l~~i---~~~~~~L~~LdL~~C 153 (252)
++++.+.+.++.+|++.+ +.|++|+|+++ .+.+.+...+ ++.-+.|++|+++.+
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 888889999999888665 56999999864 5788765444 456788999999764
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.92 E-value=2.8e-09 Score=92.15 Aligned_cols=56 Identities=27% Similarity=0.201 Sum_probs=27.7
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.+++|++|++++|.++.. ..+..+++|+.|++++|... .........+++|+.|..
T Consensus 263 ~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLG-NEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp TCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCC-GGGHHHHHTCTTCSEEEC
T ss_pred cCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCC-CcChhHhhccccCCEEEc
Confidence 456666666666665442 12345566666666665322 112222234555555543
No 28
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=8.9e-09 Score=90.41 Aligned_cols=138 Identities=18% Similarity=0.221 Sum_probs=100.7
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHh-cCCCccEEeccCCCC--CCHHHHHHHH--
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGAPALEAIG-- 82 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~-~~~~L~~L~Ls~c~~--i~~~~l~~l~-- 82 (252)
..+|+|++|+|+++..-. +..+ ..++|++|.|..|.++..++..++. .+|+|++|+|+.+.. ..+.++..++
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 457899999998862111 1111 3789999999999999999988874 699999999964211 1111122222
Q ss_pred ---hhCchhhhhcccCeecccCCCCcCcHHHHHHHh--cCCCCcEEEecCcccCHHHHHHHHh---cCCCCCEEeccCCC
Q 025444 83 ---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCW 154 (252)
Q Consensus 83 ---~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~--~~~~L~~L~L~~~~it~~~l~~i~~---~~~~L~~LdL~~C~ 154 (252)
..+|+|+.| .+.+|.+.+..+.+++. .+|+|++|+|+.|.+++.++..++. ++++|+.|+|++|.
T Consensus 246 l~~~~~p~Lr~L-------~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 246 FSKDRFPNLKWL-------GIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp SCTTTCTTCCEE-------EEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HhcCCCCCcCEE-------eCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 246777777 45566677777777764 5899999999999999998887764 58999999999884
Q ss_pred Cc
Q 025444 155 DV 156 (252)
Q Consensus 155 ~i 156 (252)
+
T Consensus 319 -i 319 (362)
T 2ra8_A 319 -L 319 (362)
T ss_dssp -C
T ss_pred -C
Confidence 6
No 29
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.88 E-value=4.7e-10 Score=97.63 Aligned_cols=36 Identities=14% Similarity=-0.011 Sum_probs=19.0
Q ss_pred HhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 139 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 139 ~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
+..+++|+.|+|++|. ++.....+...+++|+.|..
T Consensus 273 l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 273 LNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp HHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred HhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEe
Confidence 4466777777777653 32222222345566666654
No 30
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.85 E-value=2.7e-09 Score=91.41 Aligned_cols=53 Identities=23% Similarity=0.127 Sum_probs=25.5
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+++|++|++++|.++.... +..+++|++|+|++|.-.... . ...+++|+.|.
T Consensus 171 ~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~--~-l~~l~~L~~L~ 223 (308)
T 1h6u_A 171 NLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVS--P-LANTSNLFIVT 223 (308)
T ss_dssp TCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCG--G-GTTCTTCCEEE
T ss_pred CCCCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccc--c-ccCCCCCCEEE
Confidence 45555555555555443211 345556666666655322111 1 24455565554
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.83 E-value=2.7e-09 Score=92.33 Aligned_cols=144 Identities=17% Similarity=0.150 Sum_probs=101.6
Q ss_pred HcCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444 8 RSSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 86 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~ 86 (252)
..+++|+.|+++++ .+.... ...+++|++|+|++|.++.... ...+++|++|++++|. ++.- .. ...++
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~ 265 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNNKITDLSP---LANLSQLTWLEIGTNQ-ISDI--NA-VKDLT 265 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCCC--GG-GTTCT
T ss_pred cCCCccceeecccCCCCCCch---hhcCCcCCEEEccCCccCCCcc---hhcCCCCCEEECCCCc-cCCC--hh-HhcCC
Confidence 35789999999997 221111 4578999999999997775322 5689999999999974 5431 22 23566
Q ss_pred hhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444 87 LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 166 (252)
Q Consensus 87 ~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~ 166 (252)
+|+.| +++++.+..-. ....+++|++|++++|.++...... +.++++|+.|+|++|.-.... . ...
T Consensus 266 ~L~~L-------~l~~n~l~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~-~--~~~ 331 (347)
T 4fmz_A 266 KLKML-------NVGSNQISDIS---VLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFLSQNHITDIR-P--LAS 331 (347)
T ss_dssp TCCEE-------ECCSSCCCCCG---GGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEECCSSSCCCCG-G--GGG
T ss_pred CcCEE-------EccCCccCCCh---hhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEccCCcccccc-C--hhh
Confidence 67666 45555544421 2357999999999999988765443 457999999999998644222 2 467
Q ss_pred CCCCceecc
Q 025444 167 FPNLKVLGP 175 (252)
Q Consensus 167 ~~~L~~L~~ 175 (252)
+++|+.|..
T Consensus 332 l~~L~~L~l 340 (347)
T 4fmz_A 332 LSKMDSADF 340 (347)
T ss_dssp CTTCSEESS
T ss_pred hhccceeeh
Confidence 889998876
No 32
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.82 E-value=4.8e-09 Score=89.83 Aligned_cols=141 Identities=16% Similarity=0.110 Sum_probs=96.5
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
.+++|+.|+++++ .++ +.. ...+++|+.|+|++|.++.- . ....+++|++|++++|. ++.- .. ...+++
T Consensus 61 ~l~~L~~L~L~~n~i~~--~~~-~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~~ 130 (308)
T 1h6u_A 61 YLNNLIGLELKDNQITD--LAP-LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQ-ITDV--TP-LAGLSN 130 (308)
T ss_dssp GCTTCCEEECCSSCCCC--CGG-GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSC-CCCC--GG-GTTCTT
T ss_pred ccCCCCEEEccCCcCCC--Chh-HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCC-CCCc--hh-hcCCCC
Confidence 4789999999997 222 111 45789999999999977652 2 24678999999999974 5431 22 245666
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.| .++++.+..... ...+++|++|+|++|.++.... +..+++|+.|++++|.-.... . ...+
T Consensus 131 L~~L-------~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~~~-~--l~~l 194 (308)
T 1h6u_A 131 LQVL-------YLDLNQITNISP---LAGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNKISDIS-P--LASL 194 (308)
T ss_dssp CCEE-------ECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCCCG-G--GGGC
T ss_pred CCEE-------ECCCCccCcCcc---ccCCCCccEEEccCCcCCCChh---hcCCCCCCEEECCCCccCcCh-h--hcCC
Confidence 7666 444444433222 3478999999999999775322 668999999999997433222 2 4667
Q ss_pred CCCceecc
Q 025444 168 PNLKVLGP 175 (252)
Q Consensus 168 ~~L~~L~~ 175 (252)
++|+.|..
T Consensus 195 ~~L~~L~L 202 (308)
T 1h6u_A 195 PNLIEVHL 202 (308)
T ss_dssp TTCCEEEC
T ss_pred CCCCEEEc
Confidence 88888864
No 33
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.82 E-value=3.5e-09 Score=90.02 Aligned_cols=55 Identities=25% Similarity=0.219 Sum_probs=32.9
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
..+++|++|++++|.++.... +..+++|+.|+|++|. ++.. .. ...+++|+.|..
T Consensus 153 ~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~-i~~l-~~-l~~l~~L~~L~l 207 (291)
T 1h6t_A 153 SRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH-ISDL-RA-LAGLKNLDVLEL 207 (291)
T ss_dssp GGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-CCBC-GG-GTTCTTCSEEEE
T ss_pred ccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc-CCCC-hh-hccCCCCCEEEC
Confidence 367777777777777654322 5567777777777763 3221 12 345666766653
No 34
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.81 E-value=1.7e-10 Score=97.35 Aligned_cols=160 Identities=13% Similarity=-0.000 Sum_probs=73.4
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+++|+.|+++++.-..........+++|++|+|++|. ++.... .....+++|++|++++|. ++...... ...+++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L 131 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP-ATFHGLGRLHTLHLDRCG-LQELGPGL-FRGLAAL 131 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCT-TTTTTCTTCCEEECTTSC-CCCCCTTT-TTTCTTC
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCH-HHhcCCcCCCEEECCCCc-CCEECHhH-hhCCcCC
Confidence 5677777777651111111112356677777777764 443111 112456667777776642 33211111 1234445
Q ss_pred hhhcccC-----------------eecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEecc
Q 025444 89 VVLCRNM-----------------HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR 151 (252)
Q Consensus 89 ~~L~~~l-----------------~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~ 151 (252)
+.|.+.. +.++++++.+......++ ..+++|++|+|++|.++.... ..+..+++|+.|+|+
T Consensus 132 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 132 QYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF-RGLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLF 209 (285)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT-TTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECC
T ss_pred CEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh-cCccccCEEECCCCcccccCH-hHccCcccccEeeCC
Confidence 4443321 222333333322111112 245666666666666543221 223356677777777
Q ss_pred CCCCccCChHHHHhcCCCCceecc
Q 025444 152 GCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 152 ~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
++. ++.........+++|+.|..
T Consensus 210 ~n~-l~~~~~~~~~~l~~L~~L~l 232 (285)
T 1ozn_A 210 ANN-LSALPTEALAPLRALQYLRL 232 (285)
T ss_dssp SSC-CSCCCHHHHTTCTTCCEEEC
T ss_pred CCc-CCcCCHHHcccCcccCEEec
Confidence 653 32222222345666666654
No 35
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.79 E-value=6.1e-10 Score=95.47 Aligned_cols=158 Identities=15% Similarity=0.115 Sum_probs=86.9
Q ss_pred cCCCccEEEecCC-CCHHHHHHH-HHhCCCCcEEEccCCCCCHH--HHHHHHhc-CCCccEEeccCCCCCCHHHHHHHHh
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLI-AENAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGK 83 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i-~~~~~~L~~L~L~~~~i~~~--~l~~l~~~-~~~L~~L~Ls~c~~i~~~~l~~l~~ 83 (252)
..++|++|+++++ .+......+ ...+++|++|+|++|.++.. .+..+... +++|++|+|++| .++......+ .
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~-~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV-R 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC-C
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh-c
Confidence 4678888888885 221111111 24678888888888866542 23332211 378888888885 3432211122 1
Q ss_pred hCchhhhhcccCeecccCCCCcCcHH-HH-HHH-hcCCCCcEEEecCcccCH--HHHHHHHhcCCCCCEEeccCCCCccC
Q 025444 84 HCKLLVVLCRNMHPLDTADKLSQDDE-AN-AIA-STMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKL 158 (252)
Q Consensus 84 ~~~~L~~L~~~l~~l~l~~~~~~~~~-~~-~l~-~~~~~L~~L~L~~~~it~--~~l~~i~~~~~~L~~LdL~~C~~i~~ 158 (252)
.+++|+.| +++++...... .. .+. ..+++|++|+|++|.++. .....+..++++|++|+|+++.-...
T Consensus 171 ~l~~L~~L-------~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 243 (312)
T 1wwl_A 171 VFPALSTL-------DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDA 243 (312)
T ss_dssp CCSSCCEE-------ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSS
T ss_pred cCCCCCEE-------ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcc
Confidence 34455444 55555543321 11 221 467888888888888763 22335556778888888888643321
Q ss_pred ChHHHHhcCCCCceecc
Q 025444 159 DDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 159 ~~~~l~~~~~~L~~L~~ 175 (252)
........+++|+.|..
T Consensus 244 ~~~~~~~~l~~L~~L~L 260 (312)
T 1wwl_A 244 AGAPSCDWPSQLNSLNL 260 (312)
T ss_dssp CCCSCCCCCTTCCEEEC
T ss_pred cchhhhhhcCCCCEEEC
Confidence 21111233466666653
No 36
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.78 E-value=1.6e-10 Score=97.08 Aligned_cols=59 Identities=17% Similarity=0.062 Sum_probs=28.5
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|++|+++++.-..........+++|++|+|++|.++.- ...+...+++|++|+|+++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCSS
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCCC
Confidence 4567777766411110111123456677777766654421 0111244566666666664
No 37
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.77 E-value=5.2e-09 Score=97.89 Aligned_cols=141 Identities=23% Similarity=0.207 Sum_probs=77.6
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
.+++|+.|+|+++ ++.- . . ...+++|+.|+|++|.++. +. .+..+++|+.|+|++|. ++. +..+ ..+++
T Consensus 63 ~l~~L~~L~Ls~N~l~~~-~-~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~Ls~N~-l~~--l~~l-~~l~~ 132 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDI-K-P-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSLEHNG-ISD--INGL-VHLPQ 132 (605)
T ss_dssp GCTTCCEEECTTSCCCCC-G-G-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEECTTSC-CCC--CGGG-GGCTT
T ss_pred cCCCCCEEEeeCCCCCCC-h-h-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEecCCC-CCC--Cccc-cCCCc
Confidence 3566777777665 2111 1 1 3466777777777775554 11 22456777777777753 332 1112 23555
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.| .++++.+..- .....+++|+.|+|++|.|+.... +..+++|+.|+|++|..... .. ...+
T Consensus 133 L~~L-------~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l 196 (605)
T 1m9s_A 133 LESL-------YLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGL 196 (605)
T ss_dssp CSEE-------ECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTC
T ss_pred cCEE-------ECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccC
Confidence 5555 4444444332 112367888888888887664322 56778888888887643221 22 3456
Q ss_pred CCCceecc
Q 025444 168 PNLKVLGP 175 (252)
Q Consensus 168 ~~L~~L~~ 175 (252)
++|+.|..
T Consensus 197 ~~L~~L~L 204 (605)
T 1m9s_A 197 KNLDVLEL 204 (605)
T ss_dssp TTCSEEEC
T ss_pred CCCCEEEc
Confidence 77777643
No 38
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.75 E-value=2e-10 Score=97.01 Aligned_cols=132 Identities=14% Similarity=0.069 Sum_probs=73.0
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.++|++|++++. .+. ........+++|++|+|++|.++..... .+..+++|++|+|++|..++......+ ..+++|
T Consensus 31 ~~~l~~L~l~~n~i~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~-~~l~~L 107 (285)
T 1ozn_A 31 PAASQRIFLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATF-HGLGRL 107 (285)
T ss_dssp CTTCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTT-TTCTTC
T ss_pred CCCceEEEeeCCcCCc-cCHHHcccCCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHh-cCCcCC
Confidence 468999999986 221 1111225789999999999977652222 235689999999999754543221222 346667
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
+.|.+. ++.+.......+ ..+++|++|++++|.++... ...+..+++|++|+|+++
T Consensus 108 ~~L~l~-------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 108 HTLHLD-------RCGLQELGPGLF-RGLAALQYLYLQDNALQALP-DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CEEECT-------TSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CEEECC-------CCcCCEECHhHh-hCCcCCCEEECCCCcccccC-HhHhccCCCccEEECCCC
Confidence 766443 322221111111 24556666666666544211 111234555666666554
No 39
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.74 E-value=2.3e-10 Score=103.05 Aligned_cols=58 Identities=17% Similarity=-0.009 Sum_probs=29.8
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.+++|++|+|++|.++.... ..+.++++|+.|+|+++. ++.........+++|+.|..
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHL 297 (452)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEEC
T ss_pred CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEc
Confidence 45666666666666443211 123456777777777653 32222222344566666643
No 40
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.74 E-value=1.4e-09 Score=85.46 Aligned_cols=131 Identities=11% Similarity=0.091 Sum_probs=62.4
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
+.+|+.|+++++.-.. +..+....++|+.|+|++|.++.- .....+++|+.|++++| .++.-. ..+...+++|+
T Consensus 18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~ 91 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNN-RICRIG-EGLDQALPDLT 91 (176)
T ss_dssp TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSS-CCCEEC-SCHHHHCTTCC
T ss_pred cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCC-cccccC-cchhhcCCCCC
Confidence 4567777777651111 223334445777777777766541 22245667777777764 343211 01112345554
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHH--HHHHHhcCCCCCEEeccCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~--l~~i~~~~~~L~~LdL~~C 153 (252)
.| +++++.+..-........+++|++|++++|.++... -..++..+|+|+.|+++++
T Consensus 92 ~L-------~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 92 EL-------ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp EE-------ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred EE-------ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 44 233333322111111125566666666666643211 1123445666666666554
No 41
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.74 E-value=7.4e-10 Score=93.10 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=26.8
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|+.|.++++.-.. +.. ...+++|+.|+|++|.++. +. ....+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~-~~~-l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGN 95 (272)
T ss_dssp TTCCEEECTTSCCCC-CTT-GGGCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTS
T ss_pred cceeeeeeCCCCccc-ccc-cccCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCC
Confidence 456666666541100 111 1245666666666665543 11 2244566666666654
No 42
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.74 E-value=1.7e-09 Score=92.74 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=84.9
Q ss_pred HcCCCccEEEecCC-CCH--HHHHHHHHh-CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH-HHHH
Q 025444 8 RSSGSLRKLCVSGL-HND--MMFSLIAEN-AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL-EAIG 82 (252)
Q Consensus 8 ~~~~~L~~L~l~~~-~~d--~~l~~i~~~-~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l-~~l~ 82 (252)
...++|++|++++. .+. ..+..+... .++|++|+|++|.++..... ....+++|++|++++|...+..++ ..+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 34678999999986 221 223333211 37899999999876642211 225688999999998653322222 1221
Q ss_pred -hhCchhhhhcccCeecccCCCCcCc--HHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 83 -KHCKLLVVLCRNMHPLDTADKLSQD--DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 83 -~~~~~L~~L~~~l~~l~l~~~~~~~--~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
..+++|+.| +++++.+.. .....+...+++|++|+|++|.++.......+..+++|++|+|++|.
T Consensus 197 ~~~l~~L~~L-------~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~ 264 (312)
T 1wwl_A 197 PLKFPTLQVL-------ALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264 (312)
T ss_dssp TTSCTTCCEE-------ECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred hccCCCCCEE-------ECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence 345566555 555665553 22334556788999999999887753311223356888999998874
No 43
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.73 E-value=2.2e-10 Score=102.83 Aligned_cols=58 Identities=14% Similarity=0.021 Sum_probs=30.0
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.+++|++|+|++|.|+.... ..+.++++|+.|+|+++. ++.........+++|+.|..
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHL 286 (440)
T ss_dssp TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEEC
T ss_pred cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEc
Confidence 45566666666655443211 123356777777777753 32222223345666766653
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.72 E-value=1.2e-08 Score=86.64 Aligned_cols=141 Identities=18% Similarity=0.153 Sum_probs=97.5
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|+++++.-.. +.. ...+++|+.|+|++|.++.- .. ...+++|+.|++++|. ++. +.. ...+++|+
T Consensus 45 l~~L~~L~l~~~~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~ 115 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENK-VKD--LSS-LKDLKKLK 115 (291)
T ss_dssp HHTCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCC--GGG-GTTCTTCC
T ss_pred cCcccEEEccCCCccc-Chh-HhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCc-CCC--Chh-hccCCCCC
Confidence 4679999999872111 122 35689999999999977752 22 5789999999999964 543 222 23466666
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 169 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~ 169 (252)
.| +++++.+..- ..+ ..+++|++|++++|.++.. ..+..+++|+.|++++|.-.... . ...+++
T Consensus 116 ~L-------~L~~n~i~~~--~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~-~--l~~l~~ 179 (291)
T 1h6t_A 116 SL-------SLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTK 179 (291)
T ss_dssp EE-------ECTTSCCCCC--GGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCG-G--GTTCTT
T ss_pred EE-------ECCCCcCCCC--hhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccch-h--hcCCCc
Confidence 66 4455544432 122 4789999999999997764 34668999999999998433222 2 567888
Q ss_pred Cceecc
Q 025444 170 LKVLGP 175 (252)
Q Consensus 170 L~~L~~ 175 (252)
|+.|..
T Consensus 180 L~~L~L 185 (291)
T 1h6t_A 180 LQNLYL 185 (291)
T ss_dssp CCEEEC
T ss_pred cCEEEC
Confidence 888864
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.72 E-value=2.9e-10 Score=98.40 Aligned_cols=78 Identities=13% Similarity=0.030 Sum_probs=40.1
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++++.|+++++.-...-..+ ..+++|+.|+|++|.++ .+...+.++++|++|+|++| .++ .+..-...+++|+
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARN-PLR--ALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESC-CCC--CCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCC-ccc--cCcHHHhcCcCCC
Confidence 467777777775111111112 24667777777777655 22222355677777777765 333 1111123455555
Q ss_pred hhcc
Q 025444 90 VLCR 93 (252)
Q Consensus 90 ~L~~ 93 (252)
.|.+
T Consensus 154 ~L~L 157 (328)
T 4fcg_A 154 ELSI 157 (328)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 5543
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.72 E-value=5.9e-10 Score=95.40 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=26.5
Q ss_pred CCccEEEecCCC-CHHHHHHHH-HhCCCCcEEEccCCCCCHH----HHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLH-NDMMFSLIA-ENAGSLQTLRLPRSEMSDS----IVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~-~d~~l~~i~-~~~~~L~~L~L~~~~i~~~----~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|++|+++++. +......+. ..+++|++|+|++|.++.. ....+ ..+++|++|+|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~n 155 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQA 155 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEECC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeCC
Confidence 456666666641 111001111 3455666666666654431 11111 24556666666554
No 47
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.72 E-value=1.3e-08 Score=91.90 Aligned_cols=147 Identities=20% Similarity=0.167 Sum_probs=74.3
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+++|+.|+++++ .+. +.. ...+++|+.|++++|.++... . ...+++|+.|++++|. ++... . ...+++|
T Consensus 220 l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L 289 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKD--IGT-LASLTNLTDLDLANNQISNLA--P-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTAL 289 (466)
T ss_dssp CTTCCEEECCSSCCCC--CGG-GGGCTTCSEEECCSSCCCCCG--G-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTC
T ss_pred cCCCCEEECCCCCccc--chh-hhcCCCCCEEECCCCccccch--h-hhcCCCCCEEECCCCc-cCccc--c-ccCCCcc
Confidence 556666666665 111 111 134566666666666444311 1 2445666666666542 22111 1 1234444
Q ss_pred hhhccc---------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 89 VVLCRN---------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 89 ~~L~~~---------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
+.|.+. ++.++++++.+.+... ...+++|+.|++++|.++.. ..+..+++|+.|++++|
T Consensus 290 ~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCC
Confidence 444321 1223444444443222 23677777777777776543 23446777888888776
Q ss_pred CCccCChHHHHhcCCCCceecc
Q 025444 154 WDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 154 ~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
...... . ...+++|+.|..
T Consensus 364 ~l~~~~-~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 364 QISDLT-P--LANLTRITQLGL 382 (466)
T ss_dssp CCCBCG-G--GTTCTTCCEEEC
T ss_pred ccCccc-h--hhcCCCCCEEec
Confidence 433222 1 456777777754
No 48
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.72 E-value=5.4e-09 Score=89.38 Aligned_cols=82 Identities=17% Similarity=0.027 Sum_probs=53.4
Q ss_pred CCccEEEecCC-CCHHHHHHHHH--hCCCCcEEEccCCCCCHHHHHHHH-hcCCCccEEeccCCCCCCHH----HHHHHH
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAE--NAGSLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAP----ALEAIG 82 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~--~~~~L~~L~L~~~~i~~~~l~~l~-~~~~~L~~L~Ls~c~~i~~~----~l~~l~ 82 (252)
.+++.|.+.++ .++..+..+.. ..++|++|+|++|.++......++ ..+++|++|+|++|. ++.. ....+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh
Confidence 45788888886 45555544432 356799999999977653333332 568999999999964 5531 112233
Q ss_pred hhCchhhhhccc
Q 025444 83 KHCKLLVVLCRN 94 (252)
Q Consensus 83 ~~~~~L~~L~~~ 94 (252)
.+++|+.|.++
T Consensus 143 -~~~~L~~L~Ls 153 (310)
T 4glp_A 143 -LKPGLKVLSIA 153 (310)
T ss_dssp -BCSCCCEEEEE
T ss_pred -hccCCCEEEee
Confidence 57788888553
No 49
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.71 E-value=2.5e-09 Score=97.61 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=68.1
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
+++|+.|+++++ .+..... ....+++|+.|+|++|.++. ..+......+++|+.|++++|. ++...-......+++
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKS 400 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTT
T ss_pred CCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCc-CCcccccchhccCcc
Confidence 455555555554 2221111 11345556666666665553 1233333455666666666542 221000000112233
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcC-CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhc
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN 166 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~-~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~ 166 (252)
|+.| +++++.++... ...+ ++|+.|+|++|.|+ .+..-+..+++|++|+|++|.-.+ ........
T Consensus 401 L~~L-------~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~ 466 (520)
T 2z7x_B 401 LLSL-------NMSSNILTDTI----FRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKS-VPDGIFDR 466 (520)
T ss_dssp CCEE-------ECCSSCCCGGG----GGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTT
T ss_pred CCEE-------ECcCCCCCcch----hhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCc-cCHHHhcc
Confidence 3333 44444443221 1122 57777777777766 233223367777777777763332 22222344
Q ss_pred CCCCceecc
Q 025444 167 FPNLKVLGP 175 (252)
Q Consensus 167 ~~~L~~L~~ 175 (252)
+++|+.|..
T Consensus 467 l~~L~~L~l 475 (520)
T 2z7x_B 467 LTSLQKIWL 475 (520)
T ss_dssp CTTCCEEEC
T ss_pred CCcccEEEC
Confidence 566666654
No 50
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.71 E-value=6.4e-08 Score=77.56 Aligned_cols=123 Identities=11% Similarity=0.155 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhc---CCCCcEEEe
Q 025444 49 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEM 125 (252)
Q Consensus 49 ~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~---~~~L~~L~L 125 (252)
+..+..+....+.|++|+|+++..|++.++.+|++.++.=+ .++.++++++.+.+.++.+|++. -+.|++|+|
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~----~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L 105 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSK----HIEKFSLANTAISDSEARGLIELIETSPSLRVLNV 105 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCS----CCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCC----CcCEEEccCCCCChHHHHHHHHHHhcCCccCeEec
Confidence 35688888888999999999866899999999988654323 33667899999999999888854 488999999
Q ss_pred cCcccCHHHHHHHHhcC---CCCCEEeccCCCC--ccCCh-H---HHHhcCCCCceecc
Q 025444 126 AYHVISTEIVLKILSSC---ALLEFLDLRGCWD--VKLDD-K---FMKGNFPNLKVLGP 175 (252)
Q Consensus 126 ~~~~it~~~l~~i~~~~---~~L~~LdL~~C~~--i~~~~-~---~l~~~~~~L~~L~~ 175 (252)
++|.|++.++.++++.+ +.|+.|+|+++.. +...+ . ...+..+.|+.|..
T Consensus 106 ~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l 164 (197)
T 1pgv_A 106 ESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI 164 (197)
T ss_dssp CSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred CCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence 99999999999888744 5699999997643 32222 1 22455677877765
No 51
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.70 E-value=3.5e-10 Score=91.12 Aligned_cols=133 Identities=14% Similarity=0.127 Sum_probs=67.9
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|++++..-..........+++|++|+|++|.++.- .......+++|++|+|++| .++... ......+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~~L~ 103 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTN-QLQSLP-NGVFDKLTQLK 103 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCC
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCC-cCCccC-HhHhcCccCCC
Confidence 34677777777511111112224567777777777765531 1112245677777777775 343211 01112345555
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
.|.++ ++.+...... ....+++|++|+|++|.++... ...+..+++|++|+|+++.
T Consensus 104 ~L~L~-------~N~l~~~~~~-~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 104 ELALN-------TNQLQSLPDG-VFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp EEECC-------SSCCCCCCTT-TTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCC
T ss_pred EEEcC-------CCcCcccCHh-HhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCC
Confidence 55333 3322211111 1135677777777777765321 1224467777777777764
No 52
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.70 E-value=5.7e-09 Score=81.88 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=86.7
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHH
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 112 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~ 112 (252)
.+++|+.|++++|.++. +..+....++|+.|++++| .++.- ..+ ..+++|+.| +++++.+..-. ..
T Consensus 17 ~~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~--~~l-~~l~~L~~L-------~Ls~N~l~~~~-~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDN-EIRKL--DGF-PLLRRLKTL-------LVNNNRICRIG-EG 82 (176)
T ss_dssp CTTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCSS-CCCEE--CCC-CCCSSCCEE-------ECCSSCCCEEC-SC
T ss_pred CcCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCCC-CCCcc--ccc-ccCCCCCEE-------ECCCCcccccC-cc
Confidence 46799999999997774 3344444569999999996 46542 112 235556555 55555544321 12
Q ss_pred HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCceecc
Q 025444 113 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP 175 (252)
Q Consensus 113 l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L~~ 175 (252)
+...+++|++|+|++|.|+.......+..+++|+.|+++++.-..... ..+...+|+|+.|..
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCC
Confidence 224799999999999998753322245689999999999986543332 224578899999875
No 53
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.69 E-value=7.7e-08 Score=88.12 Aligned_cols=38 Identities=24% Similarity=0.237 Sum_probs=18.3
Q ss_pred hCCCCcEEEccCCCCCHHHHHHH--HhcCCCccEEeccCC
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYC 70 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l--~~~~~~L~~L~Ls~c 70 (252)
.+++|+.|+|++|.++....... ...+++|+.|+|++|
T Consensus 332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred cCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 45555555555555554332211 233455555555554
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.69 E-value=1.5e-10 Score=98.64 Aligned_cols=135 Identities=17% Similarity=0.063 Sum_probs=67.0
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
..++|+.|+++++.-.. +......+++|++|+|++|.++..........+++|+.|++++|. ++..... ....+++|
T Consensus 76 ~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l~~L 152 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNG-IFNGLSSL 152 (306)
T ss_dssp SCSCCCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC-CEECSTT-TTTTCTTC
T ss_pred cccccCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc-CCccchh-hcccCcCC
Confidence 46788888888862111 111123577888888888855442221223567888888888753 3321111 11235556
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
+.|.+. ++.+...........+++|++|+|++|.++... ...+..+++|+.|+|++|.
T Consensus 153 ~~L~l~-------~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~N~ 210 (306)
T 2z66_A 153 EVLKMA-------GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQVLNMSHNN 210 (306)
T ss_dssp CEEECT-------TCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred CEEECC-------CCccccccchhHHhhCcCCCEEECCCCCcCCcC-HHHhcCCCCCCEEECCCCc
Confidence 555433 222211101111124556666666666544321 1122345566666666553
No 55
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.69 E-value=4.3e-10 Score=94.56 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=93.9
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
.+++|+.|+++++ .+. +. ....+++|++|+|++|.++... ......+++|++|++++|. ++.... .....+++
T Consensus 61 ~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~ 134 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHD--IS-ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQ-LQSLPD-GVFDKLTN 134 (272)
T ss_dssp GCTTCCEEECTTSCCCC--CG-GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTT
T ss_pred cCCCCcEEECCCCCCCC--ch-hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCCc-CCccCH-HHhccCCC
Confidence 4789999999986 222 22 2347899999999999776421 1223578999999999964 442111 11234666
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.|.+ +++.+..-.. .....+++|++|++++|.++... ...+..+++|+.|++++|.-.... ......+
T Consensus 135 L~~L~L-------~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l 204 (272)
T 3rfs_A 135 LTYLNL-------AHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRL 204 (272)
T ss_dssp CCEEEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTC
T ss_pred CCEEEC-------CCCccCccCH-HHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCccC-HHHHhCC
Confidence 766644 3443332111 11236889999999999877321 233457889999999987533222 2233567
Q ss_pred CCCceecc
Q 025444 168 PNLKVLGP 175 (252)
Q Consensus 168 ~~L~~L~~ 175 (252)
++|+.|..
T Consensus 205 ~~L~~L~l 212 (272)
T 3rfs_A 205 TSLQYIWL 212 (272)
T ss_dssp TTCCEEEC
T ss_pred cCCCEEEc
Confidence 77777764
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.69 E-value=4.8e-10 Score=96.97 Aligned_cols=149 Identities=19% Similarity=0.219 Sum_probs=98.1
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH------
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG------ 82 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~------ 82 (252)
.++|+.|+++++ .+ . +......+++|+.|+|++|.++ .+...+..+++|++|+|++|..++.-. ..+.
T Consensus 103 l~~L~~L~L~~n~l~-~-lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~~p-~~~~~~~~~~ 177 (328)
T 4fcg_A 103 LSHLQHMTIDAAGLM-E-LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTELP-EPLASTDASG 177 (328)
T ss_dssp GTTCSEEEEESSCCC-C-CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCCCC-SCSEEEC-CC
T ss_pred CCCCCEEECCCCCcc-c-hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccccC-hhHhhccchh
Confidence 678999999986 33 2 2222357899999999999776 233345779999999999976443210 1111
Q ss_pred --hhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh
Q 025444 83 --KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD 160 (252)
Q Consensus 83 --~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~ 160 (252)
..+++|+.|.++...+. . +. .. ...+++|++|+|++|.++. +...+..+++|++|+|++|.......
T Consensus 178 ~~~~l~~L~~L~L~~n~l~--~--lp----~~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR--S--LP----AS-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp CEEESTTCCEEEEEEECCC--C--CC----GG-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCC
T ss_pred hhccCCCCCEEECcCCCcC--c--ch----Hh-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhH
Confidence 13667777755433221 1 11 11 2478999999999999773 33345689999999999987764333
Q ss_pred HHHHhcCCCCceecc
Q 025444 161 KFMKGNFPNLKVLGP 175 (252)
Q Consensus 161 ~~l~~~~~~L~~L~~ 175 (252)
.. ...+++|+.|..
T Consensus 247 ~~-~~~l~~L~~L~L 260 (328)
T 4fcg_A 247 PI-FGGRAPLKRLIL 260 (328)
T ss_dssp CC-TTCCCCCCEEEC
T ss_pred HH-hcCCCCCCEEEC
Confidence 32 245777888765
No 57
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.68 E-value=6.1e-10 Score=92.43 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=84.3
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
++|+.|++++..-..........+++|++|+|++|.++... ......+++|++|+|++| .++.... .....+++|+.
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L~~ 111 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANN-QLASLPL-GVFDHLTQLDK 111 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCCT-TTTTTCTTCCE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCC-cccccCh-hHhcccCCCCE
Confidence 56778888775211111112236788888888888665421 112256788888888885 3442111 11134556666
Q ss_pred hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCC
Q 025444 91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 170 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L 170 (252)
|.+ +++.+..-... +...+++|++|+|++|.|+... ...+..+++|+.|+|+++.-.... ......+++|
T Consensus 112 L~L-------~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L 181 (251)
T 3m19_A 112 LYL-------GGNQLKSLPSG-VFDRLTKLKELRLNTNQLQSIP-AGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKL 181 (251)
T ss_dssp EEC-------CSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTC
T ss_pred EEc-------CCCcCCCcChh-HhccCCcccEEECcCCcCCccC-HHHcCcCcCCCEEECCCCcCCccC-HHHHhCCCCC
Confidence 544 33333211111 1136788888888888876321 123457788888888886433222 2223556777
Q ss_pred ceecc
Q 025444 171 KVLGP 175 (252)
Q Consensus 171 ~~L~~ 175 (252)
+.|..
T Consensus 182 ~~L~l 186 (251)
T 3m19_A 182 QTITL 186 (251)
T ss_dssp CEEEC
T ss_pred CEEEe
Confidence 77764
No 58
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=4.5e-10 Score=89.95 Aligned_cols=147 Identities=18% Similarity=0.125 Sum_probs=93.1
Q ss_pred CccEEEecCCCCH-HHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 12 SLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 12 ~L~~L~l~~~~~d-~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
.|+.+.+.+.... ..+......+++|+.|+|++|.++. +. .+..+++|+.|++++| .++. +..+...+++|+.
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~ 97 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEE 97 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCE
Confidence 3455555543211 1122234578999999999996665 22 3356899999999986 3442 2233344566777
Q ss_pred hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCC------h---H
Q 025444 91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---K 161 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~------~---~ 161 (252)
|.++ ++.+..- ..+ ..+++|++|++++|.++.......+..+++|++|++++|...... . .
T Consensus 98 L~L~-------~N~l~~l--~~~-~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 98 LWIS-------YNQIASL--SGI-EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp EEEE-------EEECCCH--HHH-HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred EECc-------CCcCCcC--Ccc-ccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 7544 3333332 233 378999999999999886544345668999999999997532110 1 1
Q ss_pred HHHhcCCCCceec
Q 025444 162 FMKGNFPNLKVLG 174 (252)
Q Consensus 162 ~l~~~~~~L~~L~ 174 (252)
.+...+|+|+.|.
T Consensus 168 ~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 168 EVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHCSSCSEEC
T ss_pred HHHHhCCCcEEEC
Confidence 2356788888885
No 59
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.67 E-value=6.1e-10 Score=95.69 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=37.1
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
..+++|++|+++++.-..........+++|+.|+|++|.++... . ...+++|++|++++|
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN 90 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSS
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCC
Confidence 34567888888876211112223356788888888888665311 1 356777888888775
No 60
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.66 E-value=6.1e-10 Score=93.43 Aligned_cols=153 Identities=15% Similarity=0.088 Sum_probs=80.3
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|+++++.-......+...+++|++|+|++|.++.-.. .....+++|++|+++++. ++......+ ..+++|+
T Consensus 60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~ 136 (270)
T 2o6q_A 60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDRNQ-LKSLPPRVF-DSLTKLT 136 (270)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCSSC-CCCCCTTTT-TTCTTCC
T ss_pred CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCCCc-cCeeCHHHh-CcCcCCC
Confidence 5677778777752111111222456778888887775553111 122456778888887752 332111111 2455565
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 169 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~ 169 (252)
.|.+ +++.+......++ ..+++|++|+|++|.++.... ..+.++++|++|+|+++. ++.........+++
T Consensus 137 ~L~L-------s~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~ 206 (270)
T 2o6q_A 137 YLSL-------GYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEK 206 (270)
T ss_dssp EEEC-------CSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTT
T ss_pred EEEC-------CCCcCCccCHhHc-cCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCc-CCcCCHHHhccccC
Confidence 5533 3333222111111 357788888888877654221 123467788888888763 33222222345677
Q ss_pred Cceecc
Q 025444 170 LKVLGP 175 (252)
Q Consensus 170 L~~L~~ 175 (252)
|+.|..
T Consensus 207 L~~L~l 212 (270)
T 2o6q_A 207 LKMLQL 212 (270)
T ss_dssp CCEEEC
T ss_pred CCEEEe
Confidence 777654
No 61
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.66 E-value=9e-09 Score=86.19 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=91.8
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.++|+.|+++++ .+. +.. ...+++|+.|+|++|.++.-. . ...+++|+.|++++|. ++. +..+.. ++|
T Consensus 40 l~~L~~L~l~~n~i~~--l~~-l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~-l~~--l~~~~~--~~L 108 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS--LAG-MQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNR-LKN--LNGIPS--ACL 108 (263)
T ss_dssp HTTCSEEECTTSCCCC--CTT-GGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSC-CSC--CTTCCC--SSC
T ss_pred cCcCcEEECcCCCccc--chH-HhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCc-cCC--cCcccc--Ccc
Confidence 578999999886 221 222 346889999999999777522 2 4678999999999863 442 111111 445
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP 168 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~ 168 (252)
+.| +++++.+..-. . ...+++|++|+|++|.++... .+..+++|+.|++++|.-... .....++
T Consensus 109 ~~L-------~L~~N~l~~~~--~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~ 172 (263)
T 1xeu_A 109 SRL-------FLDNNELRDTD--S-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLK 172 (263)
T ss_dssp CEE-------ECCSSCCSBSG--G-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCC
T ss_pred cEE-------EccCCccCCCh--h-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCC
Confidence 444 55565554421 2 247899999999999987642 456899999999999754322 2234567
Q ss_pred CCceecc
Q 025444 169 NLKVLGP 175 (252)
Q Consensus 169 ~L~~L~~ 175 (252)
+|+.|..
T Consensus 173 ~L~~L~l 179 (263)
T 1xeu_A 173 KVNWIDL 179 (263)
T ss_dssp CCCEEEE
T ss_pred CCCEEeC
Confidence 7777753
No 62
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.65 E-value=3.1e-08 Score=89.36 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=17.1
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.++.... +..+++|+.|++++|
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNN 341 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSS
T ss_pred CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCC
Confidence 44555555555555433211 335555555555555
No 63
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.65 E-value=4.7e-10 Score=104.24 Aligned_cols=59 Identities=15% Similarity=0.142 Sum_probs=28.2
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
+++|+.|+++++.-.. +......+++|++|++++|.++.... ..+..+++|++|++++|
T Consensus 277 l~~L~~L~l~~n~l~~-lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n 335 (606)
T 3t6q_A 277 FSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN 335 (606)
T ss_dssp CTTCSEEECTTSCCSC-CCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred ccCCCEEeccCCccCC-CChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence 4566777776641111 11111345666666666665543211 11234555555555554
No 64
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.65 E-value=5.6e-09 Score=93.50 Aligned_cols=38 Identities=16% Similarity=0.292 Sum_probs=19.4
Q ss_pred hCCCCcEEEccCCCCCHHHHHH-HHhcCCCccEEeccCC
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQ-IAGRLSAVTFLDLSYC 70 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~-l~~~~~~L~~L~Ls~c 70 (252)
.+++|++|+|++|.++...... ....+++|++|+|++|
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n 139 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN 139 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC
Confidence 4555666666665555432221 1234566666666654
No 65
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.64 E-value=8.2e-10 Score=98.98 Aligned_cols=138 Identities=14% Similarity=0.013 Sum_probs=84.1
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|++|+++++.-..........+++|++|+|++|.++.......+..+++|++|+|++|. ++......+ ..+++|+
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~ 106 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAF-NGLANLE 106 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTT-TTCTTCC
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhc-cCcccCC
Confidence 36788999988621111122234688899999998865421111223568889999998863 443211222 2355555
Q ss_pred hhcccCeecccCCCCcCcHHHHH-HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 90 VLCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.| +++++.+....... ....+++|++|+|++|.++......++.++++|++|+++++...
T Consensus 107 ~L-------~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 107 VL-------TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp EE-------ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred EE-------eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 55 55566555433322 12468889999999888765433344667888999999887543
No 66
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.62 E-value=2.5e-10 Score=97.24 Aligned_cols=155 Identities=15% Similarity=0.094 Sum_probs=94.7
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
..++|++|+++++ .+..........+++|+.|++++|.++... ......+++|++|++++| .++...+......+++
T Consensus 99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRN 176 (306)
T ss_dssp TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCCC-ccccccchhHHhhCcC
Confidence 3688999999986 211101112346889999999999665321 122356899999999986 3433111222234566
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.| +++++.+.......+ ..+++|++|+|++|.++..... .+..+++|+.|+|++|.........+ ..+
T Consensus 177 L~~L-------~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~-~~~ 246 (306)
T 2z66_A 177 LTFL-------DLSQCQLEQLSPTAF-NSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMTSKKQEL-QHF 246 (306)
T ss_dssp CCEE-------ECTTSCCCEECTTTT-TTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCBCSSSSC-CCC
T ss_pred CCEE-------ECCCCCcCCcCHHHh-cCCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcccCHHHH-Hhh
Confidence 6665 455554443322223 3689999999999987643221 24578999999999985443222333 334
Q ss_pred -CCCceecc
Q 025444 168 -PNLKVLGP 175 (252)
Q Consensus 168 -~~L~~L~~ 175 (252)
++|+.|..
T Consensus 247 ~~~L~~L~L 255 (306)
T 2z66_A 247 PSSLAFLNL 255 (306)
T ss_dssp CTTCCEEEC
T ss_pred hccCCEEEc
Confidence 47887765
No 67
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.62 E-value=1.9e-08 Score=94.09 Aligned_cols=141 Identities=18% Similarity=0.165 Sum_probs=96.3
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|+++++.-.. +.. ...+++|+.|+|++|.++... . +..+++|+.|+|++|. ++. +..+ ..+++|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~-l~~--l~~l-~~l~~L~ 112 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQG-IQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENK-IKD--LSSL-KDLKKLK 112 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CTT-GGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSC-CCC--CTTS-TTCTTCC
T ss_pred CCCCCEEECcCCCCCC-ChH-HccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCC-CCC--Chhh-ccCCCCC
Confidence 4678899998862111 122 357899999999999776522 2 4789999999999974 443 1222 3456666
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 169 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~ 169 (252)
.| +++++.+..- ..+ ..+++|+.|+|++|.++.. ..+..+++|+.|+|++|...... . ...+++
T Consensus 113 ~L-------~Ls~N~l~~l--~~l-~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~ 176 (605)
T 1m9s_A 113 SL-------SLEHNGISDI--NGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIV-P--LAGLTK 176 (605)
T ss_dssp EE-------ECTTSCCCCC--GGG-GGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCG-G--GTTCTT
T ss_pred EE-------EecCCCCCCC--ccc-cCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCch-h--hccCCC
Confidence 66 4445544432 122 4799999999999998763 45668999999999998543222 2 567888
Q ss_pred Cceecc
Q 025444 170 LKVLGP 175 (252)
Q Consensus 170 L~~L~~ 175 (252)
|+.|..
T Consensus 177 L~~L~L 182 (605)
T 1m9s_A 177 LQNLYL 182 (605)
T ss_dssp CCEEEC
T ss_pred CCEEEC
Confidence 888854
No 68
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.61 E-value=3.4e-09 Score=91.22 Aligned_cols=114 Identities=15% Similarity=0.133 Sum_probs=55.2
Q ss_pred hcCCCccEEeccCCCCCCHHHH-HHHHhhCchhhhhccc--------------CeecccCCCCcCcHHHHHHHhcCCCCc
Q 025444 57 GRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLLVVLCRN--------------MHPLDTADKLSQDDEANAIASTMPKLK 121 (252)
Q Consensus 57 ~~~~~L~~L~Ls~c~~i~~~~l-~~l~~~~~~L~~L~~~--------------l~~l~l~~~~~~~~~~~~l~~~~~~L~ 121 (252)
..+++|+.|++++|. ++..++ ......+++|+.|.+. ++.++++++.+.......+ ..+++|+
T Consensus 142 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~ 219 (330)
T 1xku_A 142 NGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLA 219 (330)
T ss_dssp TTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG-TTCTTCC
T ss_pred cCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence 456666666666642 322111 1112345555555432 2334444444443222222 2567777
Q ss_pred EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 122 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 122 ~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
+|+|++|.++.... ..+..+++|++|+|++|.-... ... ...+++|+.|..
T Consensus 220 ~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l 270 (330)
T 1xku_A 220 KLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKV-PGG-LADHKYIQVVYL 270 (330)
T ss_dssp EEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSC-CTT-TTTCSSCCEEEC
T ss_pred EEECCCCcCceeCh-hhccCCCCCCEEECCCCcCccC-Chh-hccCCCcCEEEC
Confidence 77777776554221 1234667777777777633311 122 234566666543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.61 E-value=6.2e-10 Score=93.49 Aligned_cols=135 Identities=24% Similarity=0.107 Sum_probs=81.5
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.++|++|+++++ .+.- .......+++|++|+|++|.++..... ....+++|++|+|++|. ++......+ ..+++|
T Consensus 27 ~~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 102 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSL 102 (276)
T ss_dssp CTTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCC-CCEECTTTT-TTCTTC
T ss_pred CCCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCc-cCccChhhh-cCCccc
Confidence 357899999886 2211 111224688999999999877642111 22568899999999863 443221222 346667
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
+.|.+. ++.+.......+ ..+++|++|++++|.++...+...+.++++|++|++++|.-.
T Consensus 103 ~~L~l~-------~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 103 QKLVAV-------ETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp CEEECT-------TSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cEEECC-------CCCccccCchhc-ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 666443 332222111112 367888888888888765333444567888888888887433
No 70
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.60 E-value=6.1e-10 Score=95.62 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=17.5
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
.+++|++|+|++|.++... . .+..+++|++|+|++|.
T Consensus 219 ~l~~L~~L~L~~N~l~~~~-~-~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDL-G-KVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp TTSCCSEEECCSSEECCBG-G-GCCCCTTCCEEECCSSC
T ss_pred cCCCCCEEECCCCceeeec-C-cccccCCCCEEECcCCc
Confidence 3455555555555543211 0 12345555555555543
No 71
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.60 E-value=1.4e-09 Score=104.35 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=83.1
Q ss_pred CCCccEEEecCC-CCHHHHH-HHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH--HHhhC
Q 025444 10 SGSLRKLCVSGL-HNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHC 85 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~-~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~--l~~~~ 85 (252)
.++|++|+++++ .+..... .-..++++|++|+|++|.++......+..++++|++|++++|. ++...... +...+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l 177 (768)
T 3rgz_A 99 SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS-ISGANVVGWVLSDGC 177 (768)
T ss_dssp CTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSC-CEEETHHHHHHTTCC
T ss_pred CCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCc-cCCcCChhhhhhccC
Confidence 467888888875 2211111 0124677888888887754432222222456777888887753 44322222 13456
Q ss_pred chhhhhccc---------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEec
Q 025444 86 KLLVVLCRN---------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 150 (252)
Q Consensus 86 ~~L~~L~~~---------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL 150 (252)
++|+.|.+. ++.++++++.+..... . ...+++|++|+|++|.++... ...+.++++|++|+|
T Consensus 178 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~L 254 (768)
T 3rgz_A 178 GELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIP-F-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNI 254 (768)
T ss_dssp TTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCC-B-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEEC
T ss_pred CCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCc-c-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEEC
Confidence 666666432 2333444443322111 1 235677777777777766432 233456777777777
Q ss_pred cCCCCccCChHHHHhcCCCCceec
Q 025444 151 RGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 151 ~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
++|......... .+++|+.|.
T Consensus 255 s~n~l~~~~~~~---~l~~L~~L~ 275 (768)
T 3rgz_A 255 SSNQFVGPIPPL---PLKSLQYLS 275 (768)
T ss_dssp CSSCCEESCCCC---CCTTCCEEE
T ss_pred CCCcccCccCcc---ccCCCCEEE
Confidence 776433211111 456666664
No 72
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.59 E-value=1.5e-09 Score=98.09 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=18.5
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.++... ...+.++++|+.|+|+++
T Consensus 150 ~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp TCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESC
T ss_pred CCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCC
Confidence 4556666666665544321 122334555555555554
No 73
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=98.59 E-value=1.5e-09 Score=98.12 Aligned_cols=152 Identities=16% Similarity=0.017 Sum_probs=94.8
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|++++..-..........+++|++|+|++|.++..... .+..+++|++|+|++| .++.-... ....+++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~ 107 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSN-RLKLIPLG-VFTGLSNLT 107 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCSCCTT-SSTTCTTCC
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCC-cCCccCcc-cccCCCCCC
Confidence 45789999998621111112234789999999999977652222 2357899999999986 34421111 113466676
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 169 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~ 169 (252)
.|. ++++.+.......+ ..+++|++|+|++|.++.... ..+.++++|+.|+|++|.-. .........+++
T Consensus 108 ~L~-------Ls~n~i~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~ 177 (477)
T 2id5_A 108 KLD-------ISENKIVILLDYMF-QDLYNLKSLEVGDNDLVYISH-RAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHG 177 (477)
T ss_dssp EEE-------CTTSCCCEECTTTT-TTCTTCCEEEECCTTCCEECT-TSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTT
T ss_pred EEE-------CCCCccccCChhHc-cccccCCEEECCCCccceeCh-hhccCCCCCCEEECCCCcCc-ccChhHhcccCC
Confidence 664 44444332222222 478999999999998764322 22457899999999998543 233333456777
Q ss_pred Cceec
Q 025444 170 LKVLG 174 (252)
Q Consensus 170 L~~L~ 174 (252)
|+.|.
T Consensus 178 L~~L~ 182 (477)
T 2id5_A 178 LIVLR 182 (477)
T ss_dssp CCEEE
T ss_pred CcEEe
Confidence 77775
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.58 E-value=1.2e-09 Score=92.82 Aligned_cols=57 Identities=23% Similarity=0.087 Sum_probs=26.3
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|+.|++++..-..........+++|+.|+|++|.++.-. .. ..+++|+.|+|+++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CC-SCCTTCCEEECCSS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--CC-CCCCcCCEEECCCC
Confidence 45666666654111101111234566666666666554311 01 34556666666653
No 75
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.57 E-value=1.5e-09 Score=90.04 Aligned_cols=136 Identities=14% Similarity=0.059 Sum_probs=87.4
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
..++|++|+++++.-..........+++|+.|+|++|.++... ......+++|++|+|++| .++.-.. .+...+++|
T Consensus 57 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L 133 (251)
T 3m19_A 57 GLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGGN-QLKSLPS-GVFDRLTKL 133 (251)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTC
T ss_pred CcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCCC-cCCCcCh-hHhccCCcc
Confidence 3689999999996211112222356899999999999776421 122357899999999996 4552111 112346667
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
+.|.+ +++.+..-...++ ..+++|++|+|++|.++... ...+..+++|+.|+|++++-.
T Consensus 134 ~~L~L-------s~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 134 KELRL-------NTNQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEEC-------CSSCCCCCCTTTT-TTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC
T ss_pred cEEEC-------cCCcCCccCHHHc-CcCcCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCcee
Confidence 66644 4443332111122 37899999999999977422 224568899999999997543
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.56 E-value=4.8e-10 Score=103.18 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=17.7
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.+++..+...+..+++|+.|+|++|
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 34555555555555442222223334555555555554
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.54 E-value=1.3e-09 Score=99.24 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=37.3
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
+++|+.|+++++ .+. ........+++|+.|+|++|.++... . +..+++|++|+|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N 90 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQ-ISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN 90 (487)
T ss_dssp GGGCCEEECCSSCCCC-CCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCC-CCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC
Confidence 458899999886 222 11122246788999999888765311 1 356788888888875
No 78
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.54 E-value=1e-09 Score=101.92 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=28.3
Q ss_pred cCCCCcEEEecCcccCHHHHH--HHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 116 TMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~--~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+++|++|+|++|.++...+. ..+..+++|+.|+|++|......... ...+++|+.|.
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~ 506 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA-FTSLKMMNHVD 506 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhh-hccccCCCEEE
Confidence 456666666666665432111 12345666666666665332211122 23445555553
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.52 E-value=2.2e-09 Score=92.11 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=27.6
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhh
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 91 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L 91 (252)
+++|+.|++++|.++...-. ....+++|+.|++++| .++......+...+++|+.|
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEE
T ss_pred cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEE
Confidence 45666666666655541111 1134566666666664 34433333333344555555
No 80
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.52 E-value=2e-08 Score=80.24 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=87.3
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
..++|+.|+++++ .+. +. ....+++|+.|+|++|.++. +......+++|+.|++++| .++. +..+. .+++
T Consensus 46 ~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N-~l~~--l~~~~-~l~~ 116 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN-QIAS--LSGIE-KLVN 116 (198)
T ss_dssp HTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEE-ECCC--HHHHH-HHHH
T ss_pred cCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCC-cCCc--CCccc-cCCC
Confidence 4789999999986 222 22 23468899999999997663 3344455789999999996 4554 33333 4566
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH---------HHHHHHhcCCCCCEEec
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLDL 150 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~---------~l~~i~~~~~~L~~LdL 150 (252)
|+.| +++++.+..-........+++|++|++++|.++.. ....++..+|+|+.|+-
T Consensus 117 L~~L-------~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 117 LRVL-------YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp SSEE-------EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred CCEE-------ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 6666 55555555544323334899999999999997544 22345678999999983
No 81
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.51 E-value=6.5e-09 Score=91.53 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=7.6
Q ss_pred cCCCCcEEEecCcccC
Q 025444 116 TMPKLKRLEMAYHVIS 131 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it 131 (252)
.+++|++|+|++|.++
T Consensus 246 ~l~~L~~L~Ls~n~l~ 261 (390)
T 3o6n_A 246 NYPGLVEVDLSYNELE 261 (390)
T ss_dssp GCTTCSEEECCSSCCC
T ss_pred CCCCccEEECCCCcCC
Confidence 3444555555544433
No 82
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.51 E-value=5.2e-09 Score=87.79 Aligned_cols=114 Identities=19% Similarity=0.096 Sum_probs=65.5
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
..++|+.|+++++.-..........+++|+.|+|++|.++..... ....+++|++|++++|. ++...... ...+++|
T Consensus 50 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L 126 (276)
T 2z62_A 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVETN-LASLENFP-IGHLKTL 126 (276)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTSC-CCCSTTCC-CTTCTTC
T ss_pred cccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECCCCC-ccccCchh-cccCCCC
Confidence 367899999988621111111224678999999999977642211 22568899999998863 33211111 2245666
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCH
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 132 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~ 132 (252)
+.|.+ +++.+....+......+++|++|+|++|.++.
T Consensus 127 ~~L~l-------~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 127 KELNV-------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp CEEEC-------CSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CEEEC-------cCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 66643 33333321111112367888888888887553
No 83
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.50 E-value=1.1e-09 Score=101.78 Aligned_cols=57 Identities=14% Similarity=0.160 Sum_probs=32.4
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+++|++|+|++|.++... ...+.++++|++|+|++|......... ...+++|+.|.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~ 527 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLD 527 (606)
T ss_dssp TCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEE
T ss_pred cCCCCCEEECCCCcCCccC-hhhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEE
Confidence 5677777777777765321 122346777777777776433221222 24566676664
No 84
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=98.50 E-value=3.1e-09 Score=95.25 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=24.6
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+++|++|+|++|.++... ...+.++++|+.|+|+++.-.... ......+++|+.|.
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIR-PGSFQGLMHLQKLWMIQSQIQVIE-RNAFDNLQSLVEIN 261 (440)
T ss_dssp TCSSCCEEECTTSCCCEEC-TTTTTTCTTCCEEECTTCCCCEEC-TTSSTTCTTCCEEE
T ss_pred CCcccCEEECCCCccCccC-hhhhccCccCCEEECCCCceeEEC-hhhhcCCCCCCEEE
Confidence 3445555555555543211 112234555555555554222111 11123455666654
No 85
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=98.49 E-value=2.5e-09 Score=102.59 Aligned_cols=140 Identities=18% Similarity=0.138 Sum_probs=77.1
Q ss_pred HcCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 8 RSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 8 ~~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
..+++|++|+++++.-...+.. ...+++|++|+|++|.++..... .+..+++|++|++++|. ++... .. ..+++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~--~~l~~ 270 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSNQ-FVGPI-PP--LPLKS 270 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSSC-CEESC-CC--CCCTT
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCCc-ccCcc-Cc--cccCC
Confidence 3578889999888621111222 34678899999988877753333 33678888888888864 22100 00 03455
Q ss_pred hhhhccc------------------CeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEe
Q 025444 88 LVVLCRN------------------MHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLD 149 (252)
Q Consensus 88 L~~L~~~------------------l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~Ld 149 (252)
|+.|.+. ++.++++++.+.......+ ..+++|++|+|++|.++...-...+.++++|++|+
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~ 349 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLD 349 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEE
T ss_pred CCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEe
Confidence 5555332 2223333433322111122 35677777777777654222222344677777777
Q ss_pred ccCCC
Q 025444 150 LRGCW 154 (252)
Q Consensus 150 L~~C~ 154 (252)
|++|.
T Consensus 350 Ls~n~ 354 (768)
T 3rgz_A 350 LSFNE 354 (768)
T ss_dssp CCSSE
T ss_pred CcCCc
Confidence 77764
No 86
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.49 E-value=1.4e-09 Score=94.62 Aligned_cols=16 Identities=25% Similarity=0.316 Sum_probs=7.6
Q ss_pred hCCCCcEEEccCCCCC
Q 025444 33 NAGSLQTLRLPRSEMS 48 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~ 48 (252)
.+++|++|+|++|.++
T Consensus 74 ~l~~L~~L~L~~n~l~ 89 (353)
T 2z80_A 74 RCVNLQALVLTSNGIN 89 (353)
T ss_dssp TCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCccC
Confidence 3445555555544433
No 87
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.49 E-value=2.5e-08 Score=90.92 Aligned_cols=129 Identities=18% Similarity=0.217 Sum_probs=83.2
Q ss_pred HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
..+++|++|+|++|.++......+ ..+++|+.|++++|. ++. ..+......+++|+.|.+ +++.+.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~L-------s~N~l~~~l~ 391 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDI-------SQNSVSYDEK 391 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEEC-------CSSCCBCCGG
T ss_pred hhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEEC-------CCCcCCcccc
Confidence 467899999999998776333222 578999999999864 553 233333346777777744 4444333111
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcC-CCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~-~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
......+++|++|++++|.++... .... ++|+.|+|++|. ++.-...+. .+++|+.|..
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~-l~~ip~~~~-~l~~L~~L~L 451 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNK-IKSIPKQVV-KLEALQELNV 451 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSC-CCCCCGGGG-GCTTCCEEEC
T ss_pred cchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCc-ccccchhhh-cCCCCCEEEC
Confidence 111236789999999999987532 2233 699999999984 432223333 7888888865
No 88
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=98.48 E-value=4e-09 Score=94.85 Aligned_cols=57 Identities=14% Similarity=0.038 Sum_probs=26.9
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+++|++|+|++|.++... ...+.++++|+.|+|+++......... ...+++|+.|.
T Consensus 216 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~ 272 (452)
T 3zyi_A 216 PLVGLEELEMSGNHFPEIR-PGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELN 272 (452)
T ss_dssp TCTTCCEEECTTSCCSEEC-GGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEE
T ss_pred ccccccEEECcCCcCcccC-cccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEE
Confidence 3455555555555544321 122335566666666665322111111 24456666664
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.47 E-value=3.4e-10 Score=93.17 Aligned_cols=82 Identities=17% Similarity=0.041 Sum_probs=43.2
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
++|+.|++++..-..........+++|++|+|++|. ++.-.-. ....+++|++|++++|+.++.-.... ...+++|+
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~-f~~l~~L~ 108 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDA-LKELPLLK 108 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTS-EECCTTCC
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHH-hCCCCCCC
Confidence 467788887751111111122357788888888874 6531111 12457788888887744454211111 12456666
Q ss_pred hhccc
Q 025444 90 VLCRN 94 (252)
Q Consensus 90 ~L~~~ 94 (252)
.|.+.
T Consensus 109 ~L~l~ 113 (239)
T 2xwt_C 109 FLGIF 113 (239)
T ss_dssp EEEEE
T ss_pred EEeCC
Confidence 66543
No 90
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.47 E-value=2.3e-08 Score=83.65 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=87.4
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
..++|+.|+++++ +++- .. ...+++|+.|+|++|.++. +..+. . ++|+.|++++| .++.- .. ...+++
T Consensus 61 ~l~~L~~L~L~~N~i~~~--~~-l~~l~~L~~L~L~~N~l~~--l~~~~-~-~~L~~L~L~~N-~l~~~--~~-l~~l~~ 129 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDL--SP-LKDLTKLEELSVNRNRLKN--LNGIP-S-ACLSRLFLDNN-ELRDT--DS-LIHLKN 129 (263)
T ss_dssp GCTTCCEEECCSSCCCCC--GG-GTTCSSCCEEECCSSCCSC--CTTCC-C-SSCCEEECCSS-CCSBS--GG-GTTCTT
T ss_pred hCCCCCEEECCCCccCCC--hh-hccCCCCCEEECCCCccCC--cCccc-c-CcccEEEccCC-ccCCC--hh-hcCccc
Confidence 4689999999997 2221 11 4578999999999997765 22222 2 89999999997 45542 22 234666
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
|+.| +++++.+.+-. .+ ..+++|++|+|++|.++.. ..+..+++|+.|+++++.-.
T Consensus 130 L~~L-------~Ls~N~i~~~~--~l-~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 130 LEIL-------SIRNNKLKSIV--ML-GFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CCEE-------ECTTSCCCBCG--GG-GGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred ccEE-------ECCCCcCCCCh--HH-ccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence 6666 55555554432 22 4799999999999998765 44568999999999997533
No 91
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.47 E-value=7.3e-09 Score=91.18 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=71.4
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
++++.|++++..-...-..+...+++|++|+|++|.++..... ....+++|++|+|++|. ++......+ ..+++|+.
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 121 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTV 121 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCCC-CCcCCHHHh-cCCCCCCE
Confidence 6778888877511111222345678888888888866542111 12567888888888753 442211112 34555665
Q ss_pred hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
|.+ +++.+..-.. .+...+++|++|++++|.++... ...+.++++|+.|+++++.
T Consensus 122 L~L-------~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~ 176 (390)
T 3o6n_A 122 LVL-------ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR 176 (390)
T ss_dssp EEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC-TTTTSSCTTCCEEECCSSC
T ss_pred EEC-------CCCccCcCCH-HHhcCCCCCcEEECCCCccCccC-hhhccCCCCCCEEECCCCc
Confidence 543 3333221110 11135677777777777755321 1223466777777777764
No 92
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.47 E-value=9.1e-09 Score=94.98 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=27.7
Q ss_pred CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
++|+.|+|++|.++ .+..-+.++++|+.|+|+++.-.+.... ....+++|+.|..
T Consensus 450 ~~L~~L~L~~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l 504 (562)
T 3a79_B 450 PKVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDG-VFDRLTSLQYIWL 504 (562)
T ss_dssp TTCSEEECCSSCCC--CCCTTTTSSCCCSEEECCSSCCCCCCTT-STTTCTTCCCEEC
T ss_pred CcCCEEECCCCcCc--ccChhhcCCCCCCEEECCCCCCCCCCHH-HHhcCCCCCEEEe
Confidence 46666776666655 1222122566677777766533221212 2234555555543
No 93
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.44 E-value=9.6e-09 Score=94.16 Aligned_cols=60 Identities=23% Similarity=0.241 Sum_probs=36.5
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
.+++|++|+++++ .+. ........+++|++|+|++|.++...-.. +..+++|++|++++|
T Consensus 48 ~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~n 108 (549)
T 2z81_A 48 ACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSDNHLSSLSSSW-FGPLSSLKYLNLMGN 108 (549)
T ss_dssp SCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCSCCHHH-HTTCTTCCEEECTTC
T ss_pred cCCcccEEECCCCCcCc-cChhhccccccCCEEECCCCccCccCHHH-hccCCCCcEEECCCC
Confidence 3577888888876 221 11111235778888888888665422222 256788888888875
No 94
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.44 E-value=3.1e-09 Score=86.64 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=16.4
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
.+++|+.|+|++|.|+...- ..+..+++|++|+|+++
T Consensus 54 ~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCSS
T ss_pred CCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCCC
Confidence 34555555555554432100 11134455555555553
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.44 E-value=3.6e-09 Score=97.32 Aligned_cols=134 Identities=25% Similarity=0.106 Sum_probs=75.7
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++++.|++++..-..........+++|++|+|++|.++.-.. ....++++|++|++++|. ++......+ ..+++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~ 103 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQ 103 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTT-TTCTTCC
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcCCc-CCccCHhhh-cCccccc
Confidence 3578888888862111111122468888888888886664211 122568888888888853 443211222 2466666
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
+|.+. ++.+..-....+ ..+++|++|++++|.++...+...+.++++|++|++++|.
T Consensus 104 ~L~L~-------~n~l~~l~~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 104 KLVAV-------ETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp EEECT-------TSCCCCSTTCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred ccccc-------ccccccCCCccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence 66443 332222111112 3677788888887776542223334567788888887764
No 96
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.44 E-value=7.2e-09 Score=96.23 Aligned_cols=154 Identities=14% Similarity=0.044 Sum_probs=96.8
Q ss_pred cCCCccEEEecCCCCHHHHH-HHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGLHNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~-~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
.+++|+.|+++++.-..... .....+++|+.|++++|.++.... .....+++|++|++++| .++...+......+++
T Consensus 397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 474 (606)
T 3vq2_A 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD-GIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTN 474 (606)
T ss_dssp TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT-TTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTT
T ss_pred CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch-hhhcCCCCCCEEECCCC-cCCCcchHHhhccCCC
Confidence 46889999999862111111 223478999999999996654221 22357899999999996 3443212222234566
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.| +++++.+.......+ ..+++|++|+|++|.++... ...+.++++|+.|+|++|. ++..... ...+
T Consensus 475 L~~L-------~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~p~~-~~~l 543 (606)
T 3vq2_A 475 LTFL-------DLSKCQLEQISWGVF-DTLHRLQLLNMSHNNLLFLD-SSHYNQLYSLSTLDCSFNR-IETSKGI-LQHF 543 (606)
T ss_dssp CCEE-------ECTTSCCCEECTTTT-TTCTTCCEEECCSSCCSCEE-GGGTTTCTTCCEEECTTSC-CCCEESC-GGGS
T ss_pred CCEE-------ECCCCcCCccChhhh-cccccCCEEECCCCcCCCcC-HHHccCCCcCCEEECCCCc-CcccCHh-Hhhh
Confidence 6666 555555443322223 37899999999999977532 2334578999999999985 4322222 3445
Q ss_pred C-CCceecc
Q 025444 168 P-NLKVLGP 175 (252)
Q Consensus 168 ~-~L~~L~~ 175 (252)
+ +|+.|..
T Consensus 544 ~~~L~~l~l 552 (606)
T 3vq2_A 544 PKSLAFFNL 552 (606)
T ss_dssp CTTCCEEEC
T ss_pred cccCcEEEc
Confidence 5 5888865
No 97
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.43 E-value=4.5e-09 Score=97.42 Aligned_cols=133 Identities=25% Similarity=0.098 Sum_probs=79.6
Q ss_pred CCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
+++++|+|++. ++ .........+++|+.|+|++|.|+.-. ......+++|++|+|++| .++.-.... ...+++|+
T Consensus 52 ~~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N-~l~~l~~~~-f~~L~~L~ 127 (635)
T 4g8a_A 52 FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGN-PIQSLALGA-FSGLSSLQ 127 (635)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTC-CCCEECGGG-GTTCTTCC
T ss_pred cCCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCC-cCCCCCHHH-hcCCCCCC
Confidence 46888888875 22 111111246788999999888665311 112256888999999886 354311111 23466666
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 155 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~ 155 (252)
+|.+ +++.+..-...++ ..+++|++|+|++|.++...+......+++|+.|+++++.-
T Consensus 128 ~L~L-------s~N~l~~l~~~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 128 KLVA-------VETNLASLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp EEEC-------TTSCCCCSTTCCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred EEEC-------CCCcCCCCChhhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 6644 3333322111112 36788999999988876544444556788899999988743
No 98
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.41 E-value=7e-09 Score=84.98 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=18.7
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.|+ .+..-+..+++|+.|+|+++
T Consensus 110 ~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLT--ELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp TCTTCCEEECCSSCCC--SCCTTGGGCTTCSEEECCSS
T ss_pred cchhhCeEeccCCccc--ccCcccccCCCCCEEECCCC
Confidence 4555666666665554 12222345556666666554
No 99
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.41 E-value=1.8e-08 Score=93.91 Aligned_cols=16 Identities=19% Similarity=0.584 Sum_probs=7.9
Q ss_pred cCCCCcEEEecCcccC
Q 025444 116 TMPKLKRLEMAYHVIS 131 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it 131 (252)
.+++|++|+|++|.++
T Consensus 252 ~l~~L~~L~Ls~N~l~ 267 (597)
T 3oja_B 252 NYPGLVEVDLSYNELE 267 (597)
T ss_dssp GCTTCSEEECCSSCCC
T ss_pred cCCCCCEEECCCCccC
Confidence 3455555555555443
No 100
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.38 E-value=8e-08 Score=93.32 Aligned_cols=135 Identities=13% Similarity=0.009 Sum_probs=75.3
Q ss_pred cCCCccEEEecCC-CCHH----------------HHHHH--HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccC
Q 025444 9 SSGSLRKLCVSGL-HNDM----------------MFSLI--AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY 69 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~----------------~l~~i--~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~ 69 (252)
..++|+.|+++++ .+.. .+..- ...+++|+.|+|++|.+... +...+.++++|+.|+|++
T Consensus 446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTT
T ss_pred cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcC
Confidence 3578888888876 3331 12221 12678888888888854432 123335788888888888
Q ss_pred CCCCCH-HHHHHHHh------hCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcC
Q 025444 70 CSKIGA-PALEAIGK------HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC 142 (252)
Q Consensus 70 c~~i~~-~~l~~l~~------~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~ 142 (252)
|..++. .....++. .+++|+.| +++++.+..-........+++|++|+|++|.++ .+. .+..+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L-------~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp-~~~~L 594 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIF-------YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLE-AFGTN 594 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEE-------ECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC--BCC-CCCTT
T ss_pred CCCcccccchHHHHhhhhcccccCCccEE-------EeeCCcCCccCChhhhhcCCCCCEEECCCCCcc--cch-hhcCC
Confidence 654665 22222221 23355555 444444331000012236777777777777766 233 34566
Q ss_pred CCCCEEeccCCC
Q 025444 143 ALLEFLDLRGCW 154 (252)
Q Consensus 143 ~~L~~LdL~~C~ 154 (252)
++|+.|+|++|.
T Consensus 595 ~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 595 VKLTDLKLDYNQ 606 (876)
T ss_dssp SEESEEECCSSC
T ss_pred CcceEEECcCCc
Confidence 777777777764
No 101
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.38 E-value=1.3e-08 Score=95.92 Aligned_cols=59 Identities=12% Similarity=0.086 Sum_probs=27.6
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|++|++++..-..........+++|++|+|++|.++...- ....++++|++|+|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEP-ELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCT-THHHHCTTCCEEECCSS
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCH-HHHhcccCcCEEECCCC
Confidence 456666666641101111112345666666666664443111 11234566666666654
No 102
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.38 E-value=1.6e-08 Score=95.19 Aligned_cols=136 Identities=16% Similarity=0.042 Sum_probs=84.2
Q ss_pred cCCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 9 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 9 ~~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.+++|++|+++++.-..........+++|+.|+|++|.++.-.- ..+..+++|++|++++|. ++......+ ..+++|
T Consensus 47 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L 123 (680)
T 1ziw_A 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSD-KTFAFCTNLTELHLMSNS-IQKIKNNPF-VKQKNL 123 (680)
T ss_dssp GGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCT-TTTTTCTTCSEEECCSSC-CCCCCSCTT-TTCTTC
T ss_pred CCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccCh-hhhccCCCCCEEECCCCc-cCccChhHc-cccCCC
Confidence 46899999999862111122233578999999999997664111 123578999999999963 432111122 346677
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHH-hcCCCCCEEeccCCCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL-SSCALLEFLDLRGCWD 155 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~-~~~~~L~~LdL~~C~~ 155 (252)
++|.++ ++.+.......+ ..+++|++|++++|.++......+. ..+++|++|++++|..
T Consensus 124 ~~L~Ls-------~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 124 ITLDLS-------HNGLSSTKLGTQ-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CEEECC-------SSCCSCCCCCSS-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CEEECC-------CCcccccCchhh-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 776443 333322111112 3688999999999886643333222 2568899999988743
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.38 E-value=9.8e-09 Score=93.52 Aligned_cols=58 Identities=17% Similarity=0.159 Sum_probs=31.1
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcc
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 93 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~ 93 (252)
+++|+.|+|++|.++...-. ....+++|+.|+|++| .++......+...+++|+.|.+
T Consensus 119 l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~L 176 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNL 176 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGB-CGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEEC
T ss_pred cCCCCEEECCCCCCCCCCch-hhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEec
Confidence 56677777777765542111 1134667777777764 3544333344444555655533
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.38 E-value=5.7e-09 Score=85.07 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=17.5
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.|+... ...+.++++|+.|+|+++
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N 139 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVG-NDSFIGLSSVRLLSLYDN 139 (220)
T ss_dssp TCSSCCEEECTTSCCCCBC-TTSSTTCTTCSEEECTTS
T ss_pred CCcCCCEEECCCCcCCeEC-HhHcCCCccCCEEECCCC
Confidence 4555555555555544211 111224555555555554
No 105
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.38 E-value=2.5e-08 Score=81.69 Aligned_cols=134 Identities=13% Similarity=0.044 Sum_probs=85.5
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|+++++.-..........+++|+.|+|++|.|+.-. ......+++|+.|+|++| .++.-. ..+...+++|+
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~~L~ 115 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLVHLK 115 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCC
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcchhhC
Confidence 478999999986211111222346889999999999765311 122357899999999996 454211 11123466676
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.|.++ ++.+..- ...+ ..+++|++|+|++|.|+... ...+..+++|+.|+|++++-.
T Consensus 116 ~L~Ls-------~N~l~~l-p~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 116 ELFMC-------CNKLTEL-PRGI-ERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp EEECC-------SSCCCSC-CTTG-GGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred eEecc-------CCccccc-Cccc-ccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEeeCCCcc
Confidence 66544 3333310 0112 57899999999999977422 134568899999999986533
No 106
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.36 E-value=2.5e-08 Score=92.95 Aligned_cols=132 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
.+++.|+++++.-......+...+++|+.|+|++|.++..... .+..+++|+.|+|++|. ++......+ ..+++|+.
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~ 127 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVPLLTV 127 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCc-CCCCCHHHH-cCCCCCCE
Confidence 5677777777521111223345678888888888866642111 22467788888888753 443111111 34566666
Q ss_pred hcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 91 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
|.+ +++.+..-.. .+...+++|++|+|++|.++... ...+.++++|+.|+|++|.
T Consensus 128 L~L-------~~n~l~~l~~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 182 (597)
T 3oja_B 128 LVL-------ERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERIE-DDTFQATTSLQNLQLSSNR 182 (597)
T ss_dssp EEC-------CSSCCCCCCT-TTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECTTSC
T ss_pred EEe-------eCCCCCCCCH-HHhccCCCCCEEEeeCCcCCCCC-hhhhhcCCcCcEEECcCCC
Confidence 643 3333221110 11135677777777777755321 1123467777777777764
No 107
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.36 E-value=2.4e-08 Score=80.21 Aligned_cols=129 Identities=14% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
.++|+.|+|+++.++... ......+++|++|+|+++ .++... ......+++|+.|.+ +++.+..-.. ..
T Consensus 27 ~~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~L-------s~n~l~~~~~-~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLP-NGVFDELTSLTQLYLGGN-KLQSLP-NGVFNKLTSLTYLNL-------STNQLQSLPN-GV 95 (208)
T ss_dssp CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEEC-------CSSCCCCCCT-TT
T ss_pred CCCCcEEEcCCCccCcCC-hhhhcccccCcEEECCCC-ccCccC-hhhcCCCCCcCEEEC-------CCCcCCccCH-hH
Confidence 568999999999776421 122367899999999996 454211 111234667777644 3433332111 11
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
...+++|++|+|++|.++... ...+..+++|+.|+|+++. ++.........+++|+.|..
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWL 155 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEEC
T ss_pred hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEe
Confidence 247899999999999977321 2234678999999999974 43222333456788888765
No 108
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.36 E-value=1.1e-08 Score=87.01 Aligned_cols=148 Identities=18% Similarity=0.156 Sum_probs=84.8
Q ss_pred cCCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 9 SSGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 9 ~~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
..++|+.|++++. ++. +... ..+++|+.|+|++|.++. +......+++|+.|+++++ .++.-....+ ..+++
T Consensus 53 ~l~~L~~L~L~~n~l~~--~~~~-~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~-~~l~~ 125 (290)
T 1p9a_G 53 PYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLDVSFN-RLTSLPLGAL-RGLGE 125 (290)
T ss_dssp TCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEECCSS-CCCCCCSSTT-TTCTT
T ss_pred cCCCCCEEECCCCccCc--ccCC-CCCCcCCEEECCCCcCCc--CchhhccCCCCCEEECCCC-cCcccCHHHH-cCCCC
Confidence 3578999999886 221 1111 468899999999987663 2233456889999999985 3442111111 34556
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcC
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 167 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~ 167 (252)
|+.|.+ +++.+..-... +...+++|++|+|++|.++.. ...++.++++|+.|+|+++.-.+.. ..+ ...
T Consensus 126 L~~L~L-------~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~ip-~~~-~~~ 194 (290)
T 1p9a_G 126 LQELYL-------KGNELKTLPPG-LLTPTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENSLYTIP-KGF-FGS 194 (290)
T ss_dssp CCEEEC-------TTSCCCCCCTT-TTTTCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSCCCCCC-TTT-TTT
T ss_pred CCEEEC-------CCCCCCccChh-hcccccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCcCCccC-hhh-ccc
Confidence 666644 33333221111 113678888888888887632 1223456788888888886433222 222 123
Q ss_pred CCCceec
Q 025444 168 PNLKVLG 174 (252)
Q Consensus 168 ~~L~~L~ 174 (252)
++|+.|.
T Consensus 195 ~~L~~l~ 201 (290)
T 1p9a_G 195 HLLPFAF 201 (290)
T ss_dssp CCCSEEE
T ss_pred ccCCeEE
Confidence 4566654
No 109
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.35 E-value=1.1e-08 Score=88.15 Aligned_cols=57 Identities=21% Similarity=0.035 Sum_probs=31.6
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.+++|++|+|++|.++.... ..+..+++|+.|+|++|.-... ... ...+++|+.|..
T Consensus 215 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~l-p~~-l~~l~~L~~L~l 271 (332)
T 2ft3_A 215 RYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNKLSRV-PAG-LPDLKLLQVVYL 271 (332)
T ss_dssp TCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSCCCBC-CTT-GGGCTTCCEEEC
T ss_pred CCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCcCeec-Chh-hhcCccCCEEEC
Confidence 56677777777776554211 1234677777777777633211 122 244666666654
No 110
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.35 E-value=4.4e-08 Score=84.20 Aligned_cols=138 Identities=12% Similarity=0.096 Sum_probs=73.8
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHH-HHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIV-AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
++|++|+++++.-..........+++|+.|++++|.++..++ ......+++|+.|++++|. ++.-. ....++|+
T Consensus 121 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~----~~~~~~L~ 195 (330)
T 1xku_A 121 KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIP----QGLPPSLT 195 (330)
T ss_dssp TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCC----SSCCTTCS
T ss_pred ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc-cccCC----ccccccCC
Confidence 345555555531111122233456777777777775553211 1222456667776666642 22100 00012232
Q ss_pred hhcc-----------------cCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccC
Q 025444 90 VLCR-----------------NMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 152 (252)
Q Consensus 90 ~L~~-----------------~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~ 152 (252)
.|.+ +++.++++++.+.......+ ..+++|++|+|++|.++ .+...+..+++|++|+|++
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG-GGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCS
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc-cCCCCCCEEECCCCcCc--cCChhhccCCCcCEEECCC
Confidence 2221 12334555655544332233 37899999999999987 2333356889999999999
Q ss_pred CCCc
Q 025444 153 CWDV 156 (252)
Q Consensus 153 C~~i 156 (252)
|.-.
T Consensus 273 N~i~ 276 (330)
T 1xku_A 273 NNIS 276 (330)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 7544
No 111
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=9.9e-08 Score=88.54 Aligned_cols=123 Identities=21% Similarity=0.358 Sum_probs=79.2
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
..|+.|+|++|.++. +.. +..+++|+.|+|++| .++ .+......+++|+.| +++++.++.- ..+
T Consensus 441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L-------~Ls~N~l~~l--p~l- 504 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHN-RLR--ALPPALAALRCLEVL-------QASDNALENV--DGV- 504 (567)
T ss_dssp TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSS-CCC--CCCGGGGGCTTCCEE-------ECCSSCCCCC--GGG-
T ss_pred cCceEEEecCCCCCC--CcC-ccccccCcEeecCcc-ccc--ccchhhhcCCCCCEE-------ECCCCCCCCC--ccc-
Confidence 368899999987664 333 467889999999885 454 121122345666666 4444443331 122
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCCh--HHHHhcCCCCcee
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL 173 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~--~~l~~~~~~L~~L 173 (252)
..+++|++|+|++|.|+.......+.++++|+.|+|+++.-..... ..+...+|+|+.|
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence 4789999999999987754213345688999999999875443322 3455678888887
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.33 E-value=6.4e-08 Score=89.81 Aligned_cols=124 Identities=13% Similarity=0.140 Sum_probs=84.9
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhh
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV 90 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~ 90 (252)
..|+.|+++++.-.. +.. ...+++|+.|+|++|.|+. +...+..+++|+.|+|++| .++. +..+ ..+++|+.
T Consensus 441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp~l-~~l~~L~~ 512 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDN-ALEN--VDGV-ANLPRLQE 512 (567)
T ss_dssp TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSS-CCCC--CGGG-TTCSSCCE
T ss_pred cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCC-CCCC--Cccc-CCCCCCcE
Confidence 469999999962111 223 3578899999999998772 3334578999999999996 4553 2322 34666666
Q ss_pred hcccCeecccCCCCcCcHH-HHHHHhcCCCCcEEEecCcccCHH--HHHHHHhcCCCCCEEec
Q 025444 91 LCRNMHPLDTADKLSQDDE-ANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL 150 (252)
Q Consensus 91 L~~~l~~l~l~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~it~~--~l~~i~~~~~~L~~LdL 150 (252)
| +++++.+.... ...+ ..+++|+.|+|++|.++.. ....+...+|+|+.|++
T Consensus 513 L-------~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 513 L-------LLCNNRLQQSAAIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp E-------ECCSSCCCSSSTTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred E-------ECCCCCCCCCCCcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6 45555444332 2233 3799999999999997653 34456667999999975
No 113
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.32 E-value=1.9e-07 Score=87.67 Aligned_cols=36 Identities=17% Similarity=0.170 Sum_probs=21.7
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE 46 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~ 46 (252)
++++.|+++++.-...+..-...+++|+.|+|++|.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence 578888888752111111222467888888888773
No 114
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=98.32 E-value=3.2e-08 Score=96.14 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=75.8
Q ss_pred cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccCCC-CCH----HHHHHHH---hcCCCccEEeccCCCCCCHHHHH
Q 025444 9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSE-MSD----SIVAQIA---GRLSAVTFLDLSYCSKIGAPALE 79 (252)
Q Consensus 9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~~~-i~~----~~l~~l~---~~~~~L~~L~Ls~c~~i~~~~l~ 79 (252)
.+++|+.|+++++. ... +......+++|+.|+|++|. ++. ..+..+. ..+++|+.|+|++| .++ .+.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~-iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip 564 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQ-LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFP 564 (876)
T ss_dssp GCTTCCEEEEESCTTCCS-CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCC
T ss_pred cCCCCCEEECcCCCCCcc-ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccC
Confidence 46889999998862 222 22333578899999999996 876 2233322 34569999999986 354 222
Q ss_pred H--HHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCC-CCEEeccCCC
Q 025444 80 A--IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCW 154 (252)
Q Consensus 80 ~--l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~-L~~LdL~~C~ 154 (252)
. ....+++|+.|.++ ++.+.. +..+ ..+++|++|+|++|.++ .+..-+..+++ |+.|+|++|.
T Consensus 565 ~~~~l~~L~~L~~L~Ls-------~N~l~~--lp~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCV-------HNKVRH--LEAF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp CHHHHTTCTTCCEEECT-------TSCCCB--CCCC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred ChhhhhcCCCCCEEECC-------CCCccc--chhh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence 2 22356677766443 322220 0011 35666777777766655 23322445566 6666666654
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.31 E-value=5.7e-09 Score=101.10 Aligned_cols=137 Identities=16% Similarity=0.012 Sum_probs=79.0
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|++|+++++.-..........+++|+.|+|++|.+....-...+.++++|+.|+|++|. ++......+ ..+++|+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~-~~l~~L~ 100 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAF-QGLFHLF 100 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSS-CSCSSCC
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHc-cCCcccC
Confidence 46788888888621111111124678899999988832211101222678889999998863 443211222 2466666
Q ss_pred hhcccCeecccCCCCcCcHHHHH-HHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 155 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~-l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~ 155 (252)
.|.+ +++.+.+..... ....+++|++|+|++|.++.......+.++++|++|+|+++..
T Consensus 101 ~L~L-------s~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i 160 (844)
T 3j0a_A 101 ELRL-------YFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160 (844)
T ss_dssp CEEC-------TTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCC
T ss_pred EeeC-------cCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcC
Confidence 6644 333333211111 1136788888888888876543333456788888888888643
No 116
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=98.30 E-value=1.6e-08 Score=95.07 Aligned_cols=81 Identities=10% Similarity=0.047 Sum_probs=50.1
Q ss_pred cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccCCC-CCHHHHHHHHhc------CCCccEEeccCCCCCCHHHHHH
Q 025444 9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGR------LSAVTFLDLSYCSKIGAPALEA 80 (252)
Q Consensus 9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~~~-i~~~~l~~l~~~------~~~L~~L~Ls~c~~i~~~~l~~ 80 (252)
..++|+.|+++++. ... +.....++++|+.|+|++|. ++...+..-+.. +++|++|++++| .++ .+..
T Consensus 247 ~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTK-LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCSS-CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCC
T ss_pred ccCCCCEEEecCCcCCcc-ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCc
Confidence 46789999998862 221 22223468899999999996 876223222223 488999999886 354 2222
Q ss_pred --HHhhCchhhhhcc
Q 025444 81 --IGKHCKLLVVLCR 93 (252)
Q Consensus 81 --l~~~~~~L~~L~~ 93 (252)
....+++|+.|.+
T Consensus 323 ~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 323 ETSLQKMKKLGMLEC 337 (636)
T ss_dssp HHHHTTCTTCCEEEC
T ss_pred hhhhccCCCCCEEeC
Confidence 2235666776644
No 117
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.29 E-value=3.4e-07 Score=82.67 Aligned_cols=119 Identities=16% Similarity=0.077 Sum_probs=70.1
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+++|+.|+++++ .+. +.. ...+++|++|+|++|.++.-. +..+++|++|++++|. ++... + ..+++|
T Consensus 41 l~~L~~L~Ls~n~l~~--~~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~---~-~~l~~L 108 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD--MTG-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSNK-LTNLD---V-TPLTKL 108 (457)
T ss_dssp HTTCCEEECCSSCCCC--CTT-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSSC-CSCCC---C-TTCTTC
T ss_pred cCCCCEEEccCCCccc--Chh-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCCC-Cceee---c-CCCCcC
Confidence 578899999886 222 122 246888999999988766521 3568888999988864 54321 2 346666
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 155 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~ 155 (252)
+.|.++ ++.+..-. ...+++|++|++++|.++... +..+++|+.|++++|..
T Consensus 109 ~~L~L~-------~N~l~~l~----~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~ 160 (457)
T 3bz5_A 109 TYLNCD-------TNKLTKLD----VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKK 160 (457)
T ss_dssp CEEECC-------SSCCSCCC----CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSC
T ss_pred CEEECC-------CCcCCeec----CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCc
Confidence 666443 33222211 135666666666666655421 33555666666655543
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.28 E-value=2.7e-08 Score=81.03 Aligned_cols=135 Identities=12% Similarity=0.016 Sum_probs=84.1
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
...++.|++++. ++.-....+...+++|+.|+|++|.|+.-.- ..+..+++|++|+|++| .++......+ ..+++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L 107 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTSN-RLENVQHKMF-KGLESL 107 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCCCCGGGG-TTCSSC
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCCC-ccCccCHhHh-cCCcCC
Confidence 346788888885 2211011123578899999999997764211 12356899999999986 3443221112 356677
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
+.|.+ +++.+......++ ..+++|++|+|++|.|+... ...+..+++|+.|+|++++-.
T Consensus 108 ~~L~L-------s~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 108 KTLML-------RSNRITCVGNDSF-IGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CEEEC-------TTSCCCCBCTTSS-TTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEECCSCCEE
T ss_pred CEEEC-------CCCcCCeECHhHc-CCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEecCcCCc
Confidence 76644 4443332211222 37899999999999976532 233457899999999986543
No 119
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.26 E-value=2.5e-08 Score=87.20 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=69.3
Q ss_pred CCccEEEecCC-CCHHHHHHHHH-hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 11 GSLRKLCVSGL-HNDMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d~~l~~i~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
+.++.|++++. ++. ....... .+++|+.|+|++|.|+.-.- .....+++|++|+|++| .++.-.-. ....+++|
T Consensus 39 ~~l~~L~Ls~N~l~~-l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNNLSR-LRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSN-HLHTLDEF-LFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSCCCE-ECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSS-CCCEECTT-TTTTCTTC
T ss_pred CCCCEEECCCCCCCc-cChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCC-cCCcCCHH-HhCCCcCC
Confidence 45777777775 221 1111122 57788888888886654211 11246788888888875 34421111 11245555
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHH--HhcCCCCCEEeccCCC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCW 154 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i--~~~~~~L~~LdL~~C~ 154 (252)
+.|. ++++.+..-...++ ..+++|++|+|++|.|+......+ +..+++|+.|+|+++.
T Consensus 115 ~~L~-------L~~N~i~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 115 EVLL-------LYNNHIVVVDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp CEEE-------CCSSCCCEECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CEEE-------CCCCcccEECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 5553 33433332211122 367788888888877654211111 1357788888887754
No 120
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.26 E-value=5.5e-08 Score=89.73 Aligned_cols=129 Identities=13% Similarity=0.133 Sum_probs=80.9
Q ss_pred HhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 32 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 32 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~-~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
..+++|+.|+|++|.++...... ...+++|+.|++++| .++. ..+......+++|+.|.++ ++.+.....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~-------~N~l~~~~~ 420 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQG-CSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVS-------LNSLNSHAY 420 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTT-CCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECT-------TSCCBSCCS
T ss_pred cCCCCceEEECCCCccccchhhh-hcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECC-------CCcCCCccC
Confidence 46788999999999777532222 256899999999986 4553 1222223456777776444 333322111
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcC-CCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~-~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
......+++|++|++++|.++.. +.... ++|+.|+|++| .++.-...+. .+++|+.|..
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N-~l~~ip~~~~-~l~~L~~L~L 480 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNN-RIMSIPKDVT-HLQALQELNV 480 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSS-CCCCCCTTTT-SSCCCSEEEC
T ss_pred hhhhcCcccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCC-cCcccChhhc-CCCCCCEEEC
Confidence 11123679999999999998753 23344 69999999998 4432223333 6788888764
No 121
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.24 E-value=3.7e-07 Score=82.41 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=25.6
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
.++|+.|+++++ .+.- . ...+++|+.|+|++|.++.- . +..+++|++|++++|
T Consensus 84 l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 84 NTNLTYLACDSNKLTNL--D--VTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNCARN 137 (457)
T ss_dssp CTTCSEEECCSSCCSCC--C--CTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEECTTS
T ss_pred CCCCCEEECcCCCCcee--e--cCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEECCCC
Confidence 455666666654 1111 1 22455666666666544431 1 234555555555553
No 122
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.23 E-value=3e-08 Score=85.42 Aligned_cols=56 Identities=21% Similarity=0.186 Sum_probs=38.1
Q ss_pred cccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 98 LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 98 l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
++++++.+......++ ..+++|++|+|++|.++ .+...+..+++|+.|+++++.-.
T Consensus 222 L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~--~lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 222 LGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLS--RVPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp CBCCSSCCCCCCTTGG-GGCTTCCEEECCSSCCC--BCCTTGGGCTTCCEEECCSSCCC
T ss_pred EECCCCcCCcCChhHh-hCCCCCCEEECCCCcCe--ecChhhhcCccCCEEECCCCCCC
Confidence 3445544443222223 47899999999999987 23333568999999999997543
No 123
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=2.9e-06 Score=71.23 Aligned_cols=31 Identities=23% Similarity=0.172 Sum_probs=17.0
Q ss_pred CCcEEEecCcccCH------HHHHHHHhcCCCCCEEe
Q 025444 119 KLKRLEMAYHVIST------EIVLKILSSCALLEFLD 149 (252)
Q Consensus 119 ~L~~L~L~~~~it~------~~l~~i~~~~~~L~~Ld 149 (252)
+|++|+|++|.++. .....++..+|+|+.||
T Consensus 221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 56666666666542 22334555666666664
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.20 E-value=5.7e-08 Score=79.04 Aligned_cols=129 Identities=13% Similarity=0.073 Sum_probs=80.8
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
.++|+.|+|++|.|+.-.- .....+++|+.|+|+++ .++......+ ..+++|+.|.+ +++.+..-.. .+
T Consensus 31 ~~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~N-~i~~~~~~~~-~~l~~L~~L~L-------s~N~l~~l~~-~~ 99 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSNN-QISELAPDAF-QGLRSLNSLVL-------YGNKITELPK-SL 99 (220)
T ss_dssp CTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCSS-CCCEECTTTT-TTCSSCCEEEC-------CSSCCCCCCT-TT
T ss_pred CcCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCCC-cCCCcCHHHh-hCCcCCCEEEC-------CCCcCCccCH-hH
Confidence 3689999999997764211 12356899999999996 4543211222 34566766644 4433331111 11
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
...+++|++|+|++|.|+.... ..+..+++|+.|+|+++.-.+.... ....+++|+.|..
T Consensus 100 f~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L 159 (220)
T 2v9t_B 100 FEGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIAKG-TFSPLRAIQTMHL 159 (220)
T ss_dssp TTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTT-TTTTCTTCCEEEC
T ss_pred ccCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEECHH-HHhCCCCCCEEEe
Confidence 2468999999999999765322 2345789999999999754433322 2345777887764
No 125
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.17 E-value=3.7e-08 Score=95.37 Aligned_cols=132 Identities=16% Similarity=0.054 Sum_probs=85.7
Q ss_pred hCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHH
Q 025444 33 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA 112 (252)
Q Consensus 33 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~ 112 (252)
..++|++|+|++|.|+...... ...+++|+.|+|++|..++.-...++ ..+++|+.|. ++++.+......+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~-~~~l~~L~~LdLs~n~~~~~i~~~~f-~~L~~L~~L~-------Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASS-FPFLEQLQLLELGSQYTPLTIDKEAF-RNLPNLRILD-------LGSSKIYFLHPDA 92 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSS-CSSCCSCSEEEECTTCCCCEECTTTT-SSCTTCCEEE-------CTTCCCCEECTTS
T ss_pred CCCCcCEEECCCCcCCccChhH-CcccccCeEEeCCCCCCccccCHHHh-cCCCCCCEEE-------CCCCcCcccCHhH
Confidence 4578999999999776422112 26789999999999854432111222 3567777774 4444443322222
Q ss_pred HHhcCCCCcEEEecCcccCHHHHH-HHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 113 IASTMPKLKRLEMAYHVISTEIVL-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 113 l~~~~~~L~~L~L~~~~it~~~l~-~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
+ ..+++|++|+|++|.++...+. ..+.++++|++|+|++|...+.........+++|+.|.
T Consensus 93 ~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 93 F-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154 (844)
T ss_dssp S-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEE
T ss_pred c-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEE
Confidence 3 3789999999999998753222 12458999999999998654333222345678888875
No 126
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=98.16 E-value=9.7e-09 Score=88.06 Aligned_cols=58 Identities=17% Similarity=0.198 Sum_probs=29.7
Q ss_pred CCccEEEecCC-CCH--HHHHHHHHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGL-HND--MMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~-~~d--~~l~~i~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
+++++|+++++ .+. . +......+++|++|+|++ +.++... ...+.++++|++|+|++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~-p~~l~~l~~L~~L~Ls~n 111 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPI-PPAIAKLTQLHYLYITHT 111 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCC-CGGGGGCTTCSEEEEEEE
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccC-ChhHhcCCCCCEEECcCC
Confidence 46777777765 221 1 112223566777777764 4333211 111245667777777664
No 127
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.16 E-value=1.1e-07 Score=88.11 Aligned_cols=129 Identities=18% Similarity=0.052 Sum_probs=82.1
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
+++++|+|++|.|+.-.- ....++++|++|+|++| .|+.-.-.++ ..+++|++| +++++.+..-...++
T Consensus 52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~f-~~L~~L~~L-------~Ls~N~l~~l~~~~f- 120 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTL-------ILTGNPIQSLALGAF- 120 (635)
T ss_dssp TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTTT-TTCTTCCEE-------ECTTCCCCEECGGGG-
T ss_pred cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhHh-cCCCCCCEE-------EccCCcCCCCCHHHh-
Confidence 389999999997764111 12267899999999997 3542111112 346667666 444544432221222
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.++++|++|+|++|.++... ...+.++++|++|+|+++.-...........+++|+.|..
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp TTCTTCCEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred cCCCCCCEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 47999999999999976421 1124689999999999975432222233456788888753
No 128
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.09 E-value=2.5e-08 Score=81.87 Aligned_cols=155 Identities=12% Similarity=0.037 Sum_probs=84.9
Q ss_pred cCCCccEEEecCCC-CHHHHHHHHHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCc
Q 025444 9 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK 86 (252)
Q Consensus 9 ~~~~L~~L~l~~~~-~d~~l~~i~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~ 86 (252)
.+++|+.|+++++. -..........+++|++|+|++ +.++.-.. .....+++|+.|++++|. ++. +.. ...++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-~~f~~l~~L~~L~l~~n~-l~~--lp~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-DALKELPLLKFLGIFNTG-LKM--FPD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-TSEECCTTCCEEEEEEEC-CCS--CCC-CTTCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-HHhCCCCCCCEEeCCCCC-Ccc--ccc-ccccc
Confidence 46889999998862 2111111224688999999998 66663111 122568899999999863 432 111 22345
Q ss_pred hhhhhcccCeecccCCC-CcCcHHHHHHHhcCCCCc-EEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH
Q 025444 87 LLVVLCRNMHPLDTADK-LSQDDEANAIASTMPKLK-RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 164 (252)
Q Consensus 87 ~L~~L~~~l~~l~l~~~-~~~~~~~~~l~~~~~~L~-~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~ 164 (252)
+|+.| ..++++++ .+..-...++ ..+++|+ +|++++|.++... ...... ++|+.|+|++|..++.......
T Consensus 128 ~L~~L----~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 128 STDIF----FILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp BCCSE----EEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTT
T ss_pred ccccc----cEEECCCCcchhhcCcccc-cchhcceeEEEcCCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHh
Confidence 55411 23344443 2222111112 3677888 8888888765211 112223 6788888888754532222223
Q ss_pred hcC-CCCceecc
Q 025444 165 GNF-PNLKVLGP 175 (252)
Q Consensus 165 ~~~-~~L~~L~~ 175 (252)
..+ ++|+.|..
T Consensus 201 ~~l~~~L~~L~l 212 (239)
T 2xwt_C 201 GGVYSGPSLLDV 212 (239)
T ss_dssp TTCSBCCSEEEC
T ss_pred hccccCCcEEEC
Confidence 445 66777654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.08 E-value=2.3e-07 Score=74.00 Aligned_cols=108 Identities=15% Similarity=0.120 Sum_probs=65.0
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
.++|++|+|++|.|+. +...+..+++|+.|+|+++ .++.-....+ ..+++|+.|.+ +++.+..-...++
T Consensus 30 ~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f-~~l~~L~~L~L-------s~N~l~~i~~~~f 98 (193)
T 2wfh_A 30 PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNN-RISTLSNQSF-SNMTQLLTLIL-------SYNRLRCIPPRTF 98 (193)
T ss_dssp CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEEC-------CSSCCCBCCTTTT
T ss_pred CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCC-cCCEeCHhHc-cCCCCCCEEEC-------CCCccCEeCHHHh
Confidence 3589999999987763 2234467899999999985 3542111112 23555555533 3333332211122
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
..+++|++|+|++|.|+... ...+..+++|+.|+|++.+
T Consensus 99 -~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 99 -DGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp -TTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred -CCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCC
Confidence 36788888888888876321 1234567888888888754
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.06 E-value=1.5e-07 Score=82.24 Aligned_cols=130 Identities=18% Similarity=0.101 Sum_probs=80.3
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
.++++.|+|++|.|+.-....+...+++|+.|+|++| .++.-....+ ..+++|+.|.+ +++.+..-....+
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~L-------s~N~l~~~~~~~~ 108 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDL-------SSNHLHTLDEFLF 108 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEEC-------CSSCCCEECTTTT
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEEC-------CCCcCCcCCHHHh
Confidence 3569999999998775222222227899999999996 4553221122 34666766644 4443332111112
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHH--hcCCCCceec
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLG 174 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~--~~~~~L~~L~ 174 (252)
..+++|++|+|++|.|+... ...+.++++|+.|+|+++.-.......+. ..+++|+.|.
T Consensus 109 -~~l~~L~~L~L~~N~i~~~~-~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 109 -SDLQALEVLLLYNNHIVVVD-RNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLD 169 (361)
T ss_dssp -TTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEE
T ss_pred -CCCcCCCEEECCCCcccEEC-HHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEE
Confidence 47899999999999976432 22345789999999999754433333221 3567777774
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.00 E-value=2.5e-07 Score=72.35 Aligned_cols=111 Identities=16% Similarity=0.100 Sum_probs=64.9
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
.++|++|+|++|.++.. .......+++|++|+++++ .++.-.. .....+++|+.|.+ +++.+...... .
T Consensus 27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l-------~~N~l~~~~~~-~ 95 (177)
T 2o6r_A 27 PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQN-QIQSLPD-GVFDKLTKLTILYL-------HENKLQSLPNG-V 95 (177)
T ss_dssp CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEEC-------CSSCCCCCCTT-T
T ss_pred CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCC-cceEeCh-hHccCCCccCEEEC-------CCCCccccCHH-H
Confidence 46899999998866631 1112356789999999885 4542111 11124555655544 33332211111 1
Q ss_pred HhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 114 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 114 ~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
...+++|++|+|++|.++.. ...++..+++|++|+|+++.-.
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCBC
T ss_pred hhCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCee
Confidence 13678888888888887632 1233456888888888886433
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.98 E-value=1.1e-07 Score=75.62 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=67.3
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
++|++|+|++|.++......++..+++|++|+|+++ .++......+ ..+++|+.|.+ +++.+......++
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L-------s~N~l~~~~~~~~- 98 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAF-EGASHIQELQL-------GENKIKEISNKMF- 98 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEEC-------CSCCCCEECSSSS-
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHc-CCcccCCEEEC-------CCCcCCccCHHHh-
Confidence 489999999987654221122367889999999985 4543211122 23555666644 3333332211112
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCC
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 155 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~ 155 (252)
..+++|++|+|++|.|+... ...+..+++|++|+|+++.-
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp TTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEECTTCCB
T ss_pred cCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEeCCCCc
Confidence 36899999999999876432 22345788999999988643
No 133
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.91 E-value=3.4e-06 Score=79.05 Aligned_cols=53 Identities=9% Similarity=-0.073 Sum_probs=29.4
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
..+++|+.|+|++|.|+. +. ..+++|+.|+|++|. ++.-... ...+++|+.|.
T Consensus 238 ~~l~~L~~L~Ls~N~L~~--lp---~~~~~L~~L~Ls~N~-L~~lp~~-l~~l~~L~~L~ 290 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTS--LP---MLPSGLLSLSVYRNQ-LTRLPES-LIHLSSETTVN 290 (622)
T ss_dssp CCCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CCSCCGG-GGGSCTTCEEE
T ss_pred CCCCcCcEEECCCCCCCc--CC---cccccCcEEeCCCCC-CCcCCHH-HhhccccCEEE
Confidence 345667777777776552 11 155677777777763 3222222 24566666664
No 134
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.86 E-value=2.9e-06 Score=79.52 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=32.1
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.+++|++|+|++|.|+ .+...+.++++|+.|+|+++.-.
T Consensus 259 ~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCC
Confidence 6789999999999988 34444678999999999998644
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.79 E-value=9.8e-07 Score=68.85 Aligned_cols=111 Identities=13% Similarity=0.099 Sum_probs=68.7
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|++|++++..-..........+++|++|+|++|.++.-. ......+++|+.|+++++ .++.... .....+++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~~-~~~~~l~~L~ 103 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-DGVFDKLTKLTILYLHEN-KLQSLPN-GVFDKLTQLK 103 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCC
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC-hhHccCCCccCEEECCCC-CccccCH-HHhhCCcccC
Confidence 468999999986211111222356899999999999776311 122357899999999996 4552111 1123456676
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 131 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it 131 (252)
.|.+ +++.+..-.. .+...+++|++|+|++|.++
T Consensus 104 ~L~l-------~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELAL-------DTNQLKSVPD-GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEEC-------CSSCCSCCCT-TTTTTCTTCCEEECCSSCBC
T ss_pred EEEC-------cCCcceEeCH-HHhcCCcccCEEEecCCCee
Confidence 6644 3433331111 12246899999999999965
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.77 E-value=2.6e-06 Score=73.18 Aligned_cols=90 Identities=16% Similarity=0.090 Sum_probs=49.0
Q ss_pred CHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCC-EEeccC
Q 025444 74 GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLRG 152 (252)
Q Consensus 74 ~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~-~LdL~~ 152 (252)
.......+...|++|+.|.+.. +.+..-...++ .+|++|++|.|..+ ++..+ .....+|++|+ .|.+..
T Consensus 214 ~~~~~~~l~~~~~~L~~l~L~~-------n~i~~I~~~aF-~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 214 DNADFKLIRDYMPNLVSLDISK-------TNATTIPDFTF-AQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELPA 283 (329)
T ss_dssp CHHHHHHHHHHCTTCCEEECTT-------BCCCEECTTTT-TTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEECT
T ss_pred cHHHHHHHHHhcCCCeEEECCC-------CCcceecHhhh-hCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEcc
Confidence 3444555555688887775442 22221111122 36788888888776 32211 11234788888 888876
Q ss_pred CCCccCChHHHHhcCCCCceecc
Q 025444 153 CWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 153 C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.++.-+...+..|++|+.+..
T Consensus 284 --~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 284 --SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp --TCCEECTTTTTTCTTEEEEEE
T ss_pred --cceEEchhhhhCCccCCEEEe
Confidence 443333333466777777753
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.75 E-value=4.2e-06 Score=79.81 Aligned_cols=110 Identities=15% Similarity=0.093 Sum_probs=64.2
Q ss_pred HHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 31 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 31 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
...+++|+.|+|++|.++. +..-+..+++|++|+|++| .++. .-..+ ..+++|+.| +++++.+.. ..
T Consensus 220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N-~l~~-lp~~~-~~l~~L~~L-------~Ls~N~l~~-lp 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGN-SLTE-LPAEI-KNLSNLRVL-------DLSHNRLTS-LP 286 (727)
T ss_dssp --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTS-CCSC-CCGGG-GGGTTCCEE-------ECTTSCCSS-CC
T ss_pred hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCC-cCcc-cChhh-hCCCCCCEE-------eCcCCcCCc-cC
Confidence 3456788888888886552 2111236788888888885 4541 11112 335555555 444443331 01
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
..+ ..+++|++|+|++|.|+ .+..-+..+++|+.|+|+++...
T Consensus 287 ~~~-~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 287 AEL-GSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp SSG-GGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEECTTSCCC
T ss_pred hhh-cCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeCCCCccC
Confidence 112 36788888888888876 23323567888888988887533
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.74 E-value=7.3e-07 Score=70.83 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=68.9
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
..+|+.|++++. ++.-....+...+++|++|+|++|.|+... ...+..+++|++|+|+++ .++......+ ..+++|
T Consensus 28 ~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L 104 (192)
T 1w8a_A 28 PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGEN-KIKEISNKMF-LGLHQL 104 (192)
T ss_dssp CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSC-CCCEECSSSS-TTCTTC
T ss_pred CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCC-cCCccCHHHh-cCCCCC
Confidence 348999999886 221100112357899999999999776421 122357899999999996 4553221112 235666
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccC
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 131 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it 131 (252)
+.| +++++.+.......+ ..+++|++|+|++|.++
T Consensus 105 ~~L-------~L~~N~l~~~~~~~~-~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 105 KTL-------NLYDNQISCVMPGSF-EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CEE-------ECCSSCCCEECTTSS-TTCTTCCEEECTTCCBC
T ss_pred CEE-------ECCCCcCCeeCHHHh-hcCCCCCEEEeCCCCcc
Confidence 666 444444433211122 36899999999999965
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.68 E-value=1.8e-06 Score=82.42 Aligned_cols=109 Identities=18% Similarity=0.105 Sum_probs=57.7
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhh
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV 89 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~ 89 (252)
.++|+.|+|+++.-...-..+. .+++|+.|+|++|.|+ .+..-+..+++|+.|+|++|. ++ .+..-...+++|+
T Consensus 223 l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~ 296 (727)
T 4b8c_D 223 DQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNR-LT--SLPAELGSCFQLK 296 (727)
T ss_dssp CCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSC-CS--SCCSSGGGGTTCS
T ss_pred CCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCc-CC--ccChhhcCCCCCC
Confidence 4677778877751111111112 5777888888887666 222223567788888888753 44 1111112345555
Q ss_pred hhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcccCHH
Q 025444 90 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE 133 (252)
Q Consensus 90 ~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~it~~ 133 (252)
.|.+ +++.+..- ...+ ..+++|++|+|++|.++..
T Consensus 297 ~L~L-------~~N~l~~l-p~~~-~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 297 YFYF-------FDNMVTTL-PWEF-GNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp EEEC-------CSSCCCCC-CSST-TSCTTCCCEECTTSCCCSH
T ss_pred EEEC-------CCCCCCcc-Chhh-hcCCCccEEeCCCCccCCC
Confidence 5533 33322210 0012 3677788888888876643
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.65 E-value=2.6e-06 Score=67.71 Aligned_cols=108 Identities=16% Similarity=0.151 Sum_probs=68.2
Q ss_pred CCCccEEEecCC-CCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchh
Q 025444 10 SGSLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 88 (252)
Q Consensus 10 ~~~L~~L~l~~~-~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L 88 (252)
.++|++|++++. ++ . +......+++|+.|+|++|.|+.-.- .....+++|++|+|+++ .++.-....+ ..+++|
T Consensus 30 ~~~l~~L~L~~n~i~-~-ip~~~~~l~~L~~L~Ls~N~i~~i~~-~~f~~l~~L~~L~Ls~N-~l~~i~~~~f-~~l~~L 104 (193)
T 2wfh_A 30 PRDVTELYLDGNQFT-L-VPKELSNYKHLTLIDLSNNRISTLSN-QSFSNMTQLLTLILSYN-RLRCIPPRTF-DGLKSL 104 (193)
T ss_dssp CTTCCEEECCSSCCC-S-CCGGGGGCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSS-CCCBCCTTTT-TTCTTC
T ss_pred CCCCCEEECCCCcCc-h-hHHHhhcccCCCEEECCCCcCCEeCH-hHccCCCCCCEEECCCC-ccCEeCHHHh-CCCCCC
Confidence 468999999986 22 1 21233578999999999997764211 12257899999999996 4543221122 245667
Q ss_pred hhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCccc
Q 025444 89 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 130 (252)
Q Consensus 89 ~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~i 130 (252)
+.|.+ +++.+..-...++ ..+++|++|+|++|.+
T Consensus 105 ~~L~L-------~~N~l~~~~~~~~-~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 105 RLLSL-------HGNDISVVPEGAF-NDLSALSHLAIGANPL 138 (193)
T ss_dssp CEEEC-------CSSCCCBCCTTTT-TTCTTCCEEECCSSCE
T ss_pred CEEEC-------CCCCCCeeChhhh-hcCccccEEEeCCCCe
Confidence 66644 3433332111112 3689999999999984
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.61 E-value=6.8e-06 Score=76.21 Aligned_cols=14 Identities=14% Similarity=0.423 Sum_probs=6.9
Q ss_pred CCCcEEEecCcccC
Q 025444 118 PKLKRLEMAYHVIS 131 (252)
Q Consensus 118 ~~L~~L~L~~~~it 131 (252)
++|+.|+|++|.|+
T Consensus 180 ~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 180 ESLEALDVSTNLLE 193 (571)
T ss_dssp TTCCEEECCSSCCS
T ss_pred CCCCEEECcCCCCC
Confidence 44555555555443
No 142
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.61 E-value=7.7e-06 Score=73.65 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=8.0
Q ss_pred cCCCCcEEEecCcccC
Q 025444 116 TMPKLKRLEMAYHVIS 131 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it 131 (252)
.+++|++|++++|.++
T Consensus 193 ~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 193 NLPFLTAIYADNNSLK 208 (454)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCC
Confidence 4455555555555443
No 143
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.53 E-value=1.1e-05 Score=74.77 Aligned_cols=38 Identities=8% Similarity=-0.213 Sum_probs=27.5
Q ss_pred CCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCc
Q 025444 117 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 156 (252)
Q Consensus 117 ~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i 156 (252)
.+.|+.|+|++|.|+. +..-+..+++|+.|+|+++.-.
T Consensus 206 ~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 206 EETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp --CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCC
T ss_pred cccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCC
Confidence 3445999999999873 3333345999999999997544
No 144
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.43 E-value=1.5e-05 Score=68.42 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=62.7
Q ss_pred CCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHH
Q 025444 34 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 113 (252)
Q Consensus 34 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l 113 (252)
..+++.+.+.+. +....+..+...|++|+.|+|+++ .++.-.-.++ ..|++|+.|.+... +..-+..++
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF-~~~~~L~~l~l~~n--------i~~I~~~aF 269 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF-AQKKYLLKIKLPHN--------LKTIGQRVF 269 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT-TTCTTCCEEECCTT--------CCEECTTTT
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh-hCCCCCCEEECCcc--------cceehHHHh
Confidence 345556655543 444455555555666777766653 1221111111 34556665544221 111001111
Q ss_pred HhcCCCCc-EEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceec
Q 025444 114 ASTMPKLK-RLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 174 (252)
Q Consensus 114 ~~~~~~L~-~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~ 174 (252)
.+|++|+ .|.+...- |... ...+|++|+.|++++. .++.-+......|++|+.+.
T Consensus 270 -~~~~~L~~~l~l~~~l~~I~~~----aF~~c~~L~~l~l~~n-~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 270 -SNCGRLAGTLELPASVTAIEFG----AFMGCDNLRYVLATGD-KITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp -TTCTTCCEEEEECTTCCEECTT----TTTTCTTEEEEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred -hCChhccEEEEEcccceEEchh----hhhCCccCCEEEeCCC-ccCccchhhhcCCcchhhhc
Confidence 3678888 88887632 3322 2347888888888663 34323333346677777663
No 145
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=97.34 E-value=6.8e-05 Score=67.43 Aligned_cols=53 Identities=11% Similarity=0.037 Sum_probs=28.8
Q ss_pred CCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCC
Q 025444 11 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYC 70 (252)
Q Consensus 11 ~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c 70 (252)
++|+.|+++++.-.. +.. ...+++|+.|++++|.++. + ....++|+.|++++|
T Consensus 215 ~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~l~~N~l~~--l---~~~~~~L~~L~l~~N 267 (454)
T 1jl5_A 215 LSLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLKT--L---PDLPPSLEALNVRDN 267 (454)
T ss_dssp TTCCEEECCSSCCSS-CCC-CTTCTTCCEEECCSSCCSS--C---CSCCTTCCEEECCSS
T ss_pred CcccEEECcCCcCCc-ccc-cCCCCCCCEEECCCCcCCc--c---cccccccCEEECCCC
Confidence 467777777751111 111 2356777777777775543 1 112356666666664
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.06 E-value=5.1e-05 Score=58.86 Aligned_cols=38 Identities=11% Similarity=0.045 Sum_probs=25.7
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
.+++|++|+|++|.|+... ...+..+++|+.|+|++.+
T Consensus 76 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred CCCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence 6778888888888866321 1234567888888888754
No 147
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=97.03 E-value=1.7e-06 Score=75.00 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=21.0
Q ss_pred CCCcEEEecCcc-cCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 118 PKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 118 ~~L~~L~L~~~~-it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
++|++|.++++. ++... ..++.++++|+.|+|+++.
T Consensus 177 ~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 177 TQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTR 213 (350)
T ss_dssp EEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC
T ss_pred cchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCC
Confidence 456666665433 43211 1224567889999998864
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.95 E-value=6.6e-05 Score=58.49 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=49.5
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHHHHH
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA 114 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~~l~ 114 (252)
++|+.|+|++|.|+.-. ...+..+++|+.|+|+++ .++. .+. .+.
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~---------i~~------------------------~~~ 77 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSN-KLTA---------IPT------------------------GVF 77 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS-CCCC---------CCT------------------------TTT
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCC-CCCc---------cCh------------------------hHh
Confidence 56777777777554311 112245677777777774 3321 000 001
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
..+++|++|+|++|.|+.. ....+..+++|+.|+|++++
T Consensus 78 ~~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 78 DKLTQLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNP 116 (174)
T ss_dssp TTCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSC
T ss_pred CCcchhhEEECCCCcccee-CHHHhccccCCCEEEeCCCC
Confidence 3678888888888887632 11234578888888888864
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.86 E-value=0.001 Score=55.60 Aligned_cols=91 Identities=22% Similarity=0.295 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCCcEEEccCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCC
Q 025444 25 MMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADK 103 (252)
Q Consensus 25 ~~l~~i~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~ 103 (252)
..+..+...+++|++|+|++|.|+. .++..++..+++|+.|+|+++ .++.. ..+ ..|+.+ +++.+.+.++
T Consensus 160 ~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~--~~l----~~l~~l--~L~~L~L~~N 230 (267)
T 3rw6_A 160 ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE--REL----DKIKGL--KLEELWLDGN 230 (267)
T ss_dssp HHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG--GGG----GGGTTS--CCSEEECTTS
T ss_pred HHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc--hhh----hhcccC--CcceEEccCC
Confidence 3455566789999999999998876 345556678999999999995 45532 111 223322 3455566666
Q ss_pred CcCc----H-H-HHHHHhcCCCCcEEE
Q 025444 104 LSQD----D-E-ANAIASTMPKLKRLE 124 (252)
Q Consensus 104 ~~~~----~-~-~~~l~~~~~~L~~L~ 124 (252)
.+.. . . ...+...+|+|+.|+
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCccccCcchhHHHHHHHHCcccCeEC
Confidence 6543 1 2 235566899999986
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.73 E-value=0.00011 Score=57.28 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=41.7
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
..+++|++|+|++|.|+... ..++.++++|+.|+|+++. ++.........+++|+.|..
T Consensus 54 ~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 54 DHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEEC
T ss_pred cCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEEe
Confidence 36899999999999977421 2234678999999999974 43222333456788888865
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.69 E-value=0.00014 Score=64.46 Aligned_cols=58 Identities=12% Similarity=0.157 Sum_probs=32.1
Q ss_pred cCCCCcEEEecCcccCHHHH----HHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHVISTEIV----LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l----~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.|++|+.+.+.++.++...+ .....+|++|+.+.|.. .++.-+......|++|+.+..
T Consensus 269 ~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 269 YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEE
T ss_pred CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEE
Confidence 67788888877665331100 12234777777777764 243233333456666776654
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.44 E-value=0.00018 Score=61.86 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHhCCCCcEEEccC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHH
Q 025444 31 AENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 109 (252)
Q Consensus 31 ~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~ 109 (252)
...+++|+.|+|++ |.|+.-.- ..+..+++|+.|+|+++ .++...-..+ ..+++|+.|.++.+.+ ..-.
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N-~l~~~~~~~~-~~l~~L~~L~l~~N~l-------~~~~ 96 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKS-GLRFVAPDAF-HFTPRLSRLNLSFNAL-------ESLS 96 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSS-CCCEECTTGG-GSCSCCCEEECCSSCC-------SCCC
T ss_pred CCCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCC-ccceeCHHHh-cCCcCCCEEeCCCCcc-------ceeC
Confidence 34567899999986 76654111 12356889999999985 4543211112 3455666664433322 1100
Q ss_pred HHHHHhcCCCCcEEEecCcccC
Q 025444 110 ANAIASTMPKLKRLEMAYHVIS 131 (252)
Q Consensus 110 ~~~l~~~~~~L~~L~L~~~~it 131 (252)
..+...++ |+.|+|++|.++
T Consensus 97 -~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 97 -WKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp -STTTCSCC-CCEEECCSSCCC
T ss_pred -HHHcccCC-ceEEEeeCCCcc
Confidence 00111223 777777777744
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.35 E-value=0.00063 Score=60.16 Aligned_cols=51 Identities=12% Similarity=0.218 Sum_probs=26.6
Q ss_pred CCCccEEEecCCCC---HHHHHHHHHhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccC
Q 025444 10 SGSLRKLCVSGLHN---DMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSY 69 (252)
Q Consensus 10 ~~~L~~L~l~~~~~---d~~l~~i~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~ 69 (252)
|.+|+.+.+....+ .. ....|++|+.|.|+.+ .|....+. . .+|+.+.|..
T Consensus 202 ~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~l~~I~~~aF~----~-~~L~~i~lp~ 257 (401)
T 4fdw_A 202 YAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPENVSTIGQEAFR----E-SGITTVKLPN 257 (401)
T ss_dssp TCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTTCCEECTTTTT----T-CCCSEEEEET
T ss_pred ecccCEEEeCCchheehhh----HhhCCCCCCEEecCCCccCccccccc----c-CCccEEEeCC
Confidence 56777777765321 22 1235677777777664 33332221 1 4566666643
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.04 E-value=0.0011 Score=51.05 Aligned_cols=59 Identities=15% Similarity=0.138 Sum_probs=41.9
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
..+++|++|+|++|.|+.. ...++.++++|++|+|+++. ++.........+++|+.|..
T Consensus 51 ~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 51 DRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred cCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEEEe
Confidence 3688999999999997732 12334689999999999974 43222333456788888865
No 155
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=95.51 E-value=0.00012 Score=63.36 Aligned_cols=55 Identities=13% Similarity=-0.010 Sum_probs=36.7
Q ss_pred hcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
..+++|++|+|++|+|+.-. ...+.+|++|.+.+|.+++.-.. ...+++|+.+..
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp----~~~~~~L~~L~~l~~~~l~~lP~--l~~l~~L~~l~l 253 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLP----SYGLENLKKLRARSTYNLKKLPT--LEKLVALMEASL 253 (350)
T ss_dssp TTEECCSEEECTTSCCCCCC----SSSCTTCCEEECTTCTTCCCCCC--TTTCCSCCEEEC
T ss_pred ccCcccchhhcCCCCcCccC----hhhhccchHhhhccCCCcCcCCC--chhCcChhhCcC
Confidence 47899999999999977321 13577888888888877642221 234556666543
No 156
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.01 E-value=0.002 Score=55.23 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=18.6
Q ss_pred cCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCC
Q 025444 116 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 153 (252)
Q Consensus 116 ~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C 153 (252)
.+++|++|+|++|.|+... ..++..++ |+.|+|.++
T Consensus 78 ~l~~L~~L~l~~N~l~~~~-~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 78 FTPRLSRLNLSFNALESLS-WKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SCSCCCEEECCSSCCSCCC-STTTCSCC-CCEEECCSS
T ss_pred CCcCCCEEeCCCCccceeC-HHHcccCC-ceEEEeeCC
Confidence 5666667777666654211 11222222 666666654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=93.37 E-value=0.019 Score=50.14 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=61.4
Q ss_pred HhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCC-CCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcH
Q 025444 32 ENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD 108 (252)
Q Consensus 32 ~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~ 108 (252)
..|++|+.+.++.. .|....+ ..|++|+.+.+... ..|... + -..|++|+.+.+.-..-.++.
T Consensus 262 ~~c~~L~~i~lp~~~~~I~~~aF----~~c~~L~~i~l~~~i~~I~~~---a-F~~c~~L~~i~lp~~v~~I~~------ 327 (394)
T 4gt6_A 262 DSCAYLASVKMPDSVVSIGTGAF----MNCPALQDIEFSSRITELPES---V-FAGCISLKSIDIPEGITQILD------ 327 (394)
T ss_dssp TTCSSCCEEECCTTCCEECTTTT----TTCTTCCEEECCTTCCEECTT---T-TTTCTTCCEEECCTTCCEECT------
T ss_pred eecccccEEecccccceecCccc----ccccccccccCCCcccccCce---e-ecCCCCcCEEEeCCcccEehH------
Confidence 46778888888765 3433322 46788888888642 112211 1 235777777654311101111
Q ss_pred HHHHHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 109 EANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 109 ~~~~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.++ .+|.+|+++.|..+- |...+ ..+|++|+.+++.+.... ......|..|+.+..
T Consensus 328 --~aF-~~C~~L~~i~ip~sv~~I~~~a----F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 328 --DAF-AGCEQLERIAIPSSVTKIPESA----FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPV 385 (394)
T ss_dssp --TTT-TTCTTCCEEEECTTCCBCCGGG----GTTCTTCCEEEESSCHHH----HHTCBCCCCC-----
T ss_pred --hHh-hCCCCCCEEEECcccCEEhHhH----hhCCCCCCEEEECCceee----hhhhhccCCCCEEEe
Confidence 111 368888888886542 43322 357888888888763211 111244666666653
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=92.85 E-value=0.03 Score=48.86 Aligned_cols=118 Identities=12% Similarity=0.172 Sum_probs=70.0
Q ss_pred CCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCC-CCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHHH
Q 025444 35 GSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 111 (252)
Q Consensus 35 ~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c-~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~~ 111 (252)
..+..+.++.. .+....+ ..|++|+.+.+... ..+.. .....|+.|+.+.+.-....++. .
T Consensus 242 ~~~~~~~ip~~v~~i~~~aF----~~c~~L~~i~lp~~~~~I~~----~aF~~c~~L~~i~l~~~i~~I~~--------~ 305 (394)
T 4gt6_A 242 REDPAFKIPNGVARIETHAF----DSCAYLASVKMPDSVVSIGT----GAFMNCPALQDIEFSSRITELPE--------S 305 (394)
T ss_dssp CCCSEEECCTTEEEECTTTT----TTCSSCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECT--------T
T ss_pred cccceEEcCCcceEccccee----eecccccEEecccccceecC----cccccccccccccCCCcccccCc--------e
Confidence 45666776654 4443333 56889999998653 11221 11235777877755321111111 1
Q ss_pred HHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 112 AIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 112 ~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
++ .+|++|+.+.|..+- |.+.+ ..+|.+|+.+.|.. .++.-+......|.+|+.+..
T Consensus 306 aF-~~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~ 364 (394)
T 4gt6_A 306 VF-AGCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEY 364 (394)
T ss_dssp TT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEE
T ss_pred ee-cCCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEE
Confidence 11 478999999997542 44432 35899999999964 354344445578999998864
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=90.11 E-value=0.08 Score=45.62 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=62.6
Q ss_pred hCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCchhhhhcccCeecccCCCCcCcHHH
Q 025444 33 NAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 110 (252)
Q Consensus 33 ~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~L~~L~~~l~~l~l~~~~~~~~~~ 110 (252)
.+.+|+.+.+... .+....+ ..|..|+.+.+... ++.-+ ......|.+|+.+.+.-..-.++.
T Consensus 215 ~~~~l~~i~~~~~~~~i~~~~f----~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~i~~i~~-------- 279 (379)
T 4h09_A 215 YGKNLKKITITSGVTTLGDGAF----YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAKVKTVPY-------- 279 (379)
T ss_dssp TCSSCSEEECCTTCCEECTTTT----TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCCCSEECT--------
T ss_pred cccccceeeeccceeEEccccc----cCCccceEEEcCCC--ccEeC-ccccceeehhccccccccceeccc--------
Confidence 4556666666554 2222212 35677777777542 21100 011134556665543211111111
Q ss_pred HHHHhcCCCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 111 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 111 ~~l~~~~~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.+ ...|++|+.+.+..+.++..+ .....+|++|+.+.|.. .++.-+......|.+|+.+..
T Consensus 280 ~a-F~~c~~L~~i~l~~~~i~~I~-~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~i 340 (379)
T 4h09_A 280 LL-CSGCSNLTKVVMDNSAIETLE-PRVFMDCVKLSSVTLPT--ALKTIQVYAFKNCKALSTISY 340 (379)
T ss_dssp TT-TTTCTTCCEEEECCTTCCEEC-TTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCCCCC
T ss_pred cc-cccccccccccccccccceeh-hhhhcCCCCCCEEEcCc--cccEEHHHHhhCCCCCCEEEE
Confidence 11 146888999988776543211 11235788999988853 233223333466788877764
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=89.50 E-value=0.066 Score=46.62 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=27.3
Q ss_pred cCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 116 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 116 ~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
.|++|+.+.|..+- |...+ ..+|.+|+.+.+... ++.-+......|++|+.+..
T Consensus 318 ~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence 56666666664331 32221 236667777666542 32222333455666666653
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=87.92 E-value=0.17 Score=43.92 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=33.0
Q ss_pred hcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHhcCCCCceecc
Q 025444 115 STMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 175 (252)
Q Consensus 115 ~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~~~~~L~~L~~ 175 (252)
..|++|+.+.+..+. |... ...+|++|+.+.+... ++.-+......|+.|+.+..
T Consensus 159 ~~c~~L~~i~l~~~~~~I~~~----~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 159 ATCESLEYVSLPDSMETLHNG----LFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTT----TTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCC
T ss_pred cccCCCcEEecCCccceeccc----cccCCCCceEEEcCCC--ceEeCchhhccccccceeec
Confidence 367888888886544 3332 2457888888887642 32223333456777776653
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.26 E-value=0.057 Score=46.58 Aligned_cols=140 Identities=11% Similarity=0.147 Sum_probs=76.7
Q ss_pred CCCccEEEecCCCCHHHHHHHHHhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhhCch
Q 025444 10 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL 87 (252)
Q Consensus 10 ~~~L~~L~l~~~~~d~~l~~i~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~c~~i~~~~l~~l~~~~~~ 87 (252)
|.+|+.+.+......- -......|.+|+.+.++.+ .|....+ ..|.+|+.+.+... ++.-+- .....|++
T Consensus 216 ~~~l~~i~~~~~~~~i-~~~~f~~~~~L~~i~lp~~v~~I~~~aF----~~~~~l~~i~l~~~--i~~i~~-~aF~~c~~ 287 (379)
T 4h09_A 216 GKNLKKITITSGVTTL-GDGAFYGMKALDEIAIPKNVTSIGSFLL----QNCTALKTLNFYAK--VKTVPY-LLCSGCSN 287 (379)
T ss_dssp CSSCSEEECCTTCCEE-CTTTTTTCSSCCEEEECTTCCEECTTTT----TTCTTCCEEEECCC--CSEECT-TTTTTCTT
T ss_pred ccccceeeeccceeEE-ccccccCCccceEEEcCCCccEeCcccc----ceeehhcccccccc--ceeccc-cccccccc
Confidence 5566666665431100 0112246889999999876 4443333 56889999998653 221111 12246888
Q ss_pred hhhhcccCeecccCCCCcCcHHHHHHHhcCCCCcEEEecCcc--cCHHHHHHHHhcCCCCCEEeccCCCCccCChHHHHh
Q 025444 88 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKG 165 (252)
Q Consensus 88 L~~L~~~l~~l~l~~~~~~~~~~~~l~~~~~~L~~L~L~~~~--it~~~l~~i~~~~~~L~~LdL~~C~~i~~~~~~l~~ 165 (252)
|+.+.+. +..+..-+..++ .+|++|+.+.|..+- |...+ ..+|++|+.+.+.. .++.-+.....
T Consensus 288 L~~i~l~-------~~~i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a----F~~C~~L~~i~ip~--~v~~I~~~aF~ 353 (379)
T 4h09_A 288 LTKVVMD-------NSAIETLEPRVF-MDCVKLSSVTLPTALKTIQVYA----FKNCKALSTISYPK--SITLIESGAFE 353 (379)
T ss_dssp CCEEEEC-------CTTCCEECTTTT-TTCTTCCEEECCTTCCEECTTT----TTTCTTCCCCCCCT--TCCEECTTTTT
T ss_pred ccccccc-------ccccceehhhhh-cCCCCCCEEEcCccccEEHHHH----hhCCCCCCEEEECC--ccCEEchhHhh
Confidence 8777543 211111111122 478999999996542 44332 35899999998854 34322333334
Q ss_pred cCCCCc
Q 025444 166 NFPNLK 171 (252)
Q Consensus 166 ~~~~L~ 171 (252)
.|+.++
T Consensus 354 ~c~~~~ 359 (379)
T 4h09_A 354 GSSITK 359 (379)
T ss_dssp TSSCCC
T ss_pred CCCCCc
Confidence 565443
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=68.64 E-value=1.3 Score=32.23 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=25.2
Q ss_pred CCCcEEEecCcccCHHHHHHHHhcCCCCCEEeccCCC
Q 025444 118 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 154 (252)
Q Consensus 118 ~~L~~L~L~~~~it~~~l~~i~~~~~~L~~LdL~~C~ 154 (252)
++|++|+|++|.|+... ..++..+++|+.|+|.+.+
T Consensus 31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCC
Confidence 36888888888866422 2334577888888888754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=60.37 E-value=6.1 Score=28.44 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=26.3
Q ss_pred CCCcEEEccCCCCCHHHHHHHHhcCCCccEEeccCCCCC
Q 025444 35 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKI 73 (252)
Q Consensus 35 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~Ls~c~~i 73 (252)
++|+.|+|++|.|+.-. ..++..+++|+.|+|+++...
T Consensus 31 ~~l~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALP-PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCC-TTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccC-hhhhhhccccCEEEecCCCee
Confidence 37999999999665411 122356789999999986543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.00 E-value=9 Score=26.29 Aligned_cols=34 Identities=12% Similarity=0.140 Sum_probs=22.6
Q ss_pred HhCCCCcEEEccCC--CCCHHHHHHHHhcCCCccEEeccC
Q 025444 32 ENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSY 69 (252)
Q Consensus 32 ~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~Ls~ 69 (252)
..|.+|+++.|+.. .|.+..+ ..|.+|+.+.+..
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred cCCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 35777777777775 5555444 5677777777765
No 166
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=30.24 E-value=11 Score=32.13 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=8.4
Q ss_pred cCHHHHHHHHhcCCCC
Q 025444 130 ISTEIVLKILSSCALL 145 (252)
Q Consensus 130 it~~~l~~i~~~~~~L 145 (252)
++...+..++..||++
T Consensus 161 fS~~ev~~mv~r~P~l 176 (335)
T 4fp9_B 161 FTVQQVTKILHSCPSV 176 (335)
T ss_dssp CCHHHHHHHHHHCGGG
T ss_pred CCHHHHHHHHHhCChh
Confidence 4555555555555554
Done!