BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025445
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G3M|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3M|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala
pdb|2G3N|A Chain A, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|B Chain B, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|C Chain C, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|D Chain D, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|E Chain E, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
pdb|2G3N|F Chain F, Crystal Structure Of The Sulfolobus Solfataricus Alpha-
Glucosidase Mala In Complex With
Beta-Octyl-Glucopyranoside
Length = 693
Score = 142 bits (358), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 113/213 (53%), Gaps = 29/213 (13%)
Query: 41 EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVF------KSVTKTMP 94
++WPG V+PD+ + R WW L+ +++ GVDGIW DMNEP F + V ++P
Sbjct: 282 KMWPGTTVYPDFFREDTREWWAGLISEWLSQGVDGIWLDMNEPTDFSRAIEIRDVLSSLP 341
Query: 95 ESNIHRGDDEI-------------GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFV 141
+ DD + G H N Y + A +T++G + + +++ F+
Sbjct: 342 ---VQFRDDRLVTTFPDNVVHYLRGKRVKHEKVRNAYPLYEAMATFKGFRTSHRNE-IFI 397
Query: 142 LTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG------ 195
L+RAG+ G QRYA WTGDN +W+ L + + +VL L +SG PF G DIGGF G
Sbjct: 398 LSRAGYAGIQRYAFIWTGDNTPSWDDLKLQLQLVLGLSISGVPFVGCDIGGFQGRNFAEI 457
Query: 196 NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEP 228
+ + L ++ + FPF R H +D ID EP
Sbjct: 458 DNSMDLLVKYYALALFFPFYRSHKATDGIDTEP 490
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 41 EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESNI 98
EVWPG VFPDYT WW + F +N V DGIW DMNE + F + + +N
Sbjct: 404 EVWPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNN 462
Query: 99 HRGD------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPF 140
D + HN+YG MA +T E K +KR F
Sbjct: 463 LNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSF 522
Query: 141 VLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPR 200
+LTR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPDI GF +
Sbjct: 523 ILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEE 582
Query: 201 LFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 240
L RWM +GA +PF R H D +P SFG + L +S
Sbjct: 583 LCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA 39
+RE V R +P DV DIDYMD R FT+D
Sbjct: 307 MREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSV 342
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/220 (37%), Positives = 106/220 (48%), Gaps = 21/220 (9%)
Query: 41 EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGV--DGIWNDMNEPAVFKSVTKTMPESNI 98
EVWPG VFPDYT WW + F +N V DGIW DMNE + F + + +N
Sbjct: 404 EVWPGQTVFPDYTNPNCAVWWTKEFELF-HNQVEFDGIWIDMNEVSNFVDGSVSGCSTNN 462
Query: 99 HRGD------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPF 140
D + HN+YG MA +T E K +KR F
Sbjct: 463 LNNPPFTPRILDGYLFCKTLCMDAVQHWGKQYDIHNLYGYSMAVATAEAAKTVFPNKRSF 522
Query: 141 VLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPR 200
+LTR+ F GS ++AA W GDN + W+ L SI VL+ L G P GPDI GF +
Sbjct: 523 ILTRSTFAGSGKFAAHWLGDNTATWDDLRWSIPGVLEFNLFGIPMVGPDICGFALDTPEE 582
Query: 201 LFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 240
L RWM +GA +PF R H D +P SFG + L +S
Sbjct: 583 LCRRWMQLGAFYPFSRNHNGQGYKDQDPASFGADSLLLNS 622
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%)
Query: 4 IREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA 39
+RE V R +P DV DIDYMD R FT+D
Sbjct: 307 MREVVERNRAAQLPYDVQHADIDYMDERRDFTYDSV 342
>pdb|3PHA|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|C Chain C, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3PHA|D Chain D, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Gh31 Family) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 667
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 125/314 (39%), Gaps = 87/314 (27%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTF---------------------------- 36
R + +RE IP D+I+MDIDYM F+ FT
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 37 ----DKAWEV-----------------------WPGPCVFPDYTQSKVRSWWGSLVKDFI 69
+K +EV WPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 70 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN- 110
G++G WNDMNEPA+F S E IH + D + ++
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 111 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 157
H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 158 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 217
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 218 HTESDAIDHEPWSF 231
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3NUK|A Chain A, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
pdb|3NUK|B Chain B, The Crystal Structure Of The W169y Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174
Length = 666
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 125/314 (39%), Gaps = 87/314 (27%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTF---------------------------- 36
R + +RE IP D+I+MDIDYM F+ FT
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 37 ----DKAWEV-----------------------WPGPCVFPDYTQSKVRSWWGSLVKDFI 69
+K +EV WPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 70 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN- 110
G++G WNDMNEPA+F S E IH + D + ++
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 111 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 157
H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 158 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 217
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 218 HTESDAIDHEPWSF 231
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3M46|A Chain A, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M46|B Chain B, The Crystal Structure Of The D73a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/314 (26%), Positives = 125/314 (39%), Gaps = 87/314 (27%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTF---------------------------- 36
R + +RE IP D+I+MDIDYM F+ FT
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 37 ----DKAWEV-----------------------WPGPCVFPDYTQSKVRSWWGSLVKDFI 69
+K +EV WPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 70 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN- 110
G++G WNDMNEPA+F S E IH + D + ++
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 111 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 157
H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 158 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 217
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 218 HTESDAIDHEPWSF 231
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3LPO|A Chain A, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|B Chain B, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|C Chain C, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPO|D Chain D, Crystal Structure Of The N-Terminal Domain Of
Sucrase-Isomal
pdb|3LPP|A Chain A, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|B Chain B, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|C Chain C, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
pdb|3LPP|D Chain D, Crystal Complex Of N-Terminal Sucrase-Isomaltase With
Kotala
Length = 898
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 109/222 (49%), Gaps = 25/222 (11%)
Query: 41 EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIH 99
EVWPG V+PD+T WW + F DG+W DMNE + F + + N++
Sbjct: 433 EVWPGLTVYPDFTNPNCIDWWANECSIFHQEVQYDGLWIDMNEVSSF--IQGSTKGCNVN 490
Query: 100 RGD--------------------DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRP 139
+ + D + H++YG MA +T + ++ +KR
Sbjct: 491 KLNYPPFTPDILDKLMYSKTICMDAVQNWGKQYDVHSLYGYSMAIATEQAVQKVFPNKRS 550
Query: 140 FVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATP 199
F+LTR+ F GS R+AA W GDN ++WE + SI+ +L+ L G P G DI GF T
Sbjct: 551 FILTRSTFAGSGRHAAHWLGDNTASWEQMEWSITGMLEFSLFGIPLVGADICGFVAETTE 610
Query: 200 RLFGRWMGIGAMFPFCRGHTESDAIDHE-PWSFGEEVLFCSS 240
L RWM +GA +PF R H SD +H+ P FG+ L S
Sbjct: 611 ELCRRWMQLGAFYPFSRNH-NSDGYEHQDPAFFGQNSLLVKS 651
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 3 LIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA 39
+++E VR RE GIP D DIDYM+ + FT+D+
Sbjct: 334 VVKEVVRRNREAGIPFDTQVTDIDYMEDKKDFTYDQV 370
>pdb|3NSX|A Chain A, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
pdb|3NSX|B Chain B, The Crystal Structure Of The The Crystal Structure Of The
D420a Mutant Of The Alpha-Glucosidase (Family 31) From
Ruminococcus Obeum Atcc 29174
Length = 666
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 124/314 (39%), Gaps = 87/314 (27%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTF---------------------------- 36
R + +RE IP D+I+MDIDYM F+ FT
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 37 ----DKAWEV-----------------------WPGPCVFPDYTQSKVRSWWGSLVKDFI 69
+K +EV WPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 70 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN- 110
G++G WNDMNEPA+F S E IH + D + ++
Sbjct: 301 DQGIEGFWNDMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 111 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 157
H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 158 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 217
G N S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGANKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 218 HTESDAIDHEPWSF 231
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3M6D|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3M6D|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
pdb|3MKK|A Chain A, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3MKK|B Chain B, The Crystal Structure Of The D307a Mutant Of Glycoside
Hydrolase (Family 31) From Ruminococcus Obeum Atcc 29174
In Complex With Isomaltose
pdb|3POC|A Chain A, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
pdb|3POC|B Chain B, The Crystal Structure Of The D307a Mutant Of
Alpha-Glucosidase (Family 31) From Ruminococcus Obeum
Atcc 29174 In Complex With Acarbose
Length = 666
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 124/314 (39%), Gaps = 87/314 (27%)
Query: 5 REFVRTFREKGIPCDVIWMDIDYMDGFRCFTF---------------------------- 36
R + +RE IP D+I+MDIDYM F+ FT
Sbjct: 181 RAVAKGYRENHIPIDMIYMDIDYMQDFKDFTVNEKNFPDFPEFVKEMKDQELRLIPIIDA 240
Query: 37 ----DKAWEV-----------------------WPGPCVFPDYTQSKVRSWWGSLVKDFI 69
+K +EV WPG FPD + R W+G + I
Sbjct: 241 GVKVEKGYEVYEEGVKNNYFCKREDGSDFVAAVWPGDTHFPDMLNPEARKWFGDKYRFLI 300
Query: 70 YNGVDGIWNDMNEPAVFKSVTKTMP------------ESNIH------RGDDEIGGCQN- 110
G++G WN MNEPA+F S E IH + D + ++
Sbjct: 301 DQGIEGFWNAMNEPAIFYSSEGLAEAKEFAGEFAKDTEGKIHPWAMQAKMKDIVNSPEDY 360
Query: 111 -------------HSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATW 157
H HN++G M R+ E + D +KR + +R+ +IG RY W
Sbjct: 361 KRFYHNVNGKKIRHDKVHNLFGYNMTRAAGEAFERIDPEKRFLMFSRSSYIGMHRYGGIW 420
Query: 158 TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRG 217
GDN S W H+ +++ M+ L + G ++G D+GGF + T L R++ +G P R
Sbjct: 421 MGDNKSWWSHILLNLKMLPSLNMCGFMYTGADLGGFGDDTTRDLLLRFLALGVFTPLMRD 480
Query: 218 HTESDAIDHEPWSF 231
H + E + F
Sbjct: 481 HAAEGTREQECYQF 494
>pdb|3N04|A Chain A, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
pdb|3N04|B Chain B, The Crystal Structure Of The Alpha-Glucosidase (Family 31)
From Ruminococcus Obeum Atcc 29174
Length = 666
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 95/222 (42%), Gaps = 32/222 (14%)
Query: 42 VWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMP------- 94
VWPG FPD + R W+G + I G++G WND NEPA+F S
Sbjct: 273 VWPGDTHFPDXLNPEARKWFGDKYRFLIDQGIEGFWNDXNEPAIFYSSEGLAEAKEFAGE 332
Query: 95 -----ESNIH------RGDDEIGGCQN--------------HSYYHNVYGMLMARSTYEG 129
E IH + D + ++ H HN++G R+ E
Sbjct: 333 FAKDTEGKIHPWAXQAKXKDIVNSPEDYKRFYHNVNGKKIRHDKVHNLFGYNXTRAAGEA 392
Query: 130 MKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPD 189
+ D +KR +R+ +IG RY W GDN S W H+ +++ + L G ++G D
Sbjct: 393 FERIDPEKRFLXFSRSSYIGXHRYGGIWXGDNKSWWSHILLNLKXLPSLNXCGFXYTGAD 452
Query: 190 IGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSF 231
+GGF + T L R++ +G P R H + E + F
Sbjct: 453 LGGFGDDTTRDLLLRFLALGVFTPLXRDHAAEGTREQECYQF 494
>pdb|3TON|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TON|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|3TOP|A Chain A, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3TOP|B Chain B, Crystral Structure Of The C-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
Length = 908
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 103/241 (42%), Gaps = 35/241 (14%)
Query: 37 DKAWEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN--------GVDGIWNDMNEPAVF-- 86
D E++ FPD+ ++ WW +++ N DG+W DMNEP+ F
Sbjct: 419 DSQVELYRAYVAFPDFFRNSTAKWWKREIEELYNNPQNPERSLKFDGMWIDMNEPSSFVN 478
Query: 87 ---------------------KSVTKTMPESNIHRGDDEI---GGCQNHSYYHNVYGMLM 122
+S + + + +I G H HN+YG
Sbjct: 479 GAVSPGCRDASLNHPPYMPHLESRDRGLSSKTLCMESQQILPDGSLVQHYNVHNLYGWSQ 538
Query: 123 ARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 182
R TYE ++ +R V+TR+ F S R+A W GDN + W+ L SI +++ L G
Sbjct: 539 TRPTYEAVQEV-TGQRGVVITRSTFPSSGRWAGHWLGDNTAAWDQLKKSIIGMMEFSLFG 597
Query: 183 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIV 242
++G DI GF +A + RWM +GA +PF R H +P S+ + S V
Sbjct: 598 ISYTGADICGFFQDAEYEMCVRWMQLGAFYPFSRNHNTIGTRRQDPVSWDVAFVNISRTV 657
Query: 243 I 243
+
Sbjct: 658 L 658
>pdb|4B9Y|A Chain A, Crystal Structure Of Apo Agd31b, Alpha-transglucosylase In
Glycoside Hydrolase Family 31
pdb|4B9Z|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With Acarbose
pdb|4BA0|A Chain A, Crystal Structure Of Agd31b, Alpha-transglucosylase,
Complexed With 5f-alpha-glcf
Length = 817
Score = 87.8 bits (216), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 90/201 (44%), Gaps = 18/201 (8%)
Query: 38 KAWEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESN 97
KA+E++ G D + W+ S+ KD GV G W D+ EP + PE
Sbjct: 371 KAFELYFGNGGIIDVFSKEGSRWFSSIYKDLSKQGVAGWWGDLGEPEMH-------PEDT 423
Query: 98 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT- 156
H IG HN YG A Y+ + RPF++ RAGF+GSQRY
Sbjct: 424 QH----AIGDADT---VHNAYGHRWAEMLYQQQLDQFPELRPFIMMRAGFVGSQRYGMIP 476
Query: 157 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGF-DGNATPR-LFGRWMGIGAMFPF 214
WTGD W L + + LQ+ L G + D+GGF DG + ++ RW+ G P
Sbjct: 477 WTGDVSRTWGGLASQVELALQMSLLGFGYIHSDLGGFADGETLDKEMYIRWLQYGVFQPV 536
Query: 215 CRGHTESDAIDHEPWSFGEEV 235
R H + D I EP EE
Sbjct: 537 YRPHGQ-DHIPSEPVFQDEET 556
>pdb|2X2H|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2H|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase
pdb|2X2I|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2I|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Acarbose
pdb|2X2J|A Chain A, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|B Chain B, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|C Chain C, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
pdb|2X2J|D Chain D, Crystal Structure Of The Gracilariopsis Lemaneiformis
Alpha- 1,4-Glucan Lyase With Deoxynojirimycin
Length = 1027
Score = 84.3 bits (207), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 94/241 (39%), Gaps = 51/241 (21%)
Query: 17 PCDVIWMDIDYMDGFRCFTFDKAWEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGI 76
P D +DY G C +FPD+ + V WWG+ K G+D +
Sbjct: 492 PSDAYIGHLDYGGGVEC------------DALFPDWGRPDVAEWWGNNYKKLFSIGLDFV 539
Query: 77 WNDMNEPAVFKSVT----KTMPESNIHRGDDEIGGCQNHSYYH----------------- 115
W DM PA+ P+ N DD G N YH
Sbjct: 540 WQDMTVPAMMPHKIGDDINVKPDGNWPNADDPSNGQYNWKTYHPQVLVTDMRYENHGREP 599
Query: 116 -----NVYGMLMARST-----YEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNW 165
N++ + ST E K +R ++++R G+IG+Q + W GDN +
Sbjct: 600 MVTQRNIHAYTLCESTRKEGIVENADTLTKFRRSYIISRGGYIGNQHFGGMWVGDNSTTS 659
Query: 166 EHLHMSISMVLQLGLSGQPFSGPDIGGF-----DGNATP---RLFGRWMGIGAMFPFCRG 217
++ M I+ + + +S P G DIGGF + TP L R++ G + P+ R
Sbjct: 660 NYIQMMIANNINMNMSCLPLVGSDIGGFTSYDNENQRTPCTGDLMVRYVQAGCLLPWFRN 719
Query: 218 H 218
H
Sbjct: 720 H 720
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 68.9 bits (167), Expect = 3e-12, Method: Composition-based stats.
Identities = 49/198 (24%), Positives = 85/198 (42%), Gaps = 23/198 (11%)
Query: 40 WEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPES 96
W+ W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 377 WDKWQPGLAIY-DFTNPDACKWYADKLKGLVAXGVDCFKTDFGERIPTDVQWFDGSDPQ- 434
Query: 97 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT 156
+ H++Y +Y L+ + +K ++ + R+ +G+Q++
Sbjct: 435 ------------KXHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVH 478
Query: 157 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCR 216
W GD +N+E S+ L +GLSG F DIGGF+ A ++ RW G + R
Sbjct: 479 WGGDCYANYESXAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 217 GHTESDAIDHEPWSFGEE 234
H PW++ +E
Sbjct: 539 LHGSKSY--RVPWAYDDE 554
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 28/211 (13%)
Query: 40 WEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPES 96
W+ W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 377 WDKWQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ- 434
Query: 97 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT 156
+ H++Y +Y L+ + +K ++ + R+ +G+Q++
Sbjct: 435 ------------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVH 478
Query: 157 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCR 216
W GD +N+E + S+ L +GLSG F DIGGF+ A ++ RW G + R
Sbjct: 479 WGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 217 GHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 247
H PW++ +E S ++ FF
Sbjct: 539 LHGSKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 28/211 (13%)
Query: 40 WEVW-PGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE--PAVFKSVTKTMPES 96
W+ W PG ++ D+T W+ +K + GVD D E P + + P+
Sbjct: 377 WDKWQPGLAIY-DFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFDGSDPQ- 434
Query: 97 NIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAAT 156
+ H++Y +Y L+ + +K ++ + R+ +G+Q++
Sbjct: 435 ------------KMHNHYAYIYNELV----WNVLKDTVGEEEAVLFARSASVGAQKFPVH 478
Query: 157 WTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCR 216
W GD +N+E + S+ L +GLSG F DIGGF+ A ++ RW G + R
Sbjct: 479 WGGDCYANYESMAESLRGGLSIGLSGFGFWSHDIGGFENTAPAHVYKRWCAFGLLSSHSR 538
Query: 217 GHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 247
H PW++ +E S ++ FF
Sbjct: 539 LHGSKSY--RVPWAYDDE-----SCDVVRFF 562
>pdb|2XVG|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus
pdb|2XVK|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With
5-Fluoro-Alpha-D-Xylopyranosyl Fluoride
pdb|2XVL|A Chain A, Crystal Structure Of Alpha-Xylosidase (Gh31) From
Cellvibrio Japonicus In Complex With Pentaerythritol
Propoxylate (5 4 Po Oh)
Length = 1020
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 73/190 (38%), Gaps = 37/190 (19%)
Query: 60 WWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT----KTMPESNIHRGDDEIGGCQNHSYYH 115
+W + +G D W D EP + ++T K + N EI
Sbjct: 563 FWKQIRDKINVHGFDAWWLDAVEPDIHSNLTFEKRKWLMTPNARGNGAEI---------F 613
Query: 116 NVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY-AATWTGDNVSNWEHLHMSISM 174
N Y + A Y+G D DKR F+LTR+GF G QR +A W+GD VS W + I+
Sbjct: 614 NAYAVPHAEGVYQGELATDGDKRSFILTRSGFGGIQRTGSAIWSGDIVSRWSDMKDQIAA 673
Query: 175 VLQLGLSGQPFSGPDIGGFDGNATPR-----------------------LFGRWMGIGAM 211
+ L+G DIGGF R L RW GA
Sbjct: 674 GIGTNLAGVTNWTFDIGGFTPEDRFRHGKKGFVGSWTALDAEQVDEWQELNTRWYQFGAF 733
Query: 212 FPFCRGHTES 221
P R H ++
Sbjct: 734 VPLYRSHGQN 743
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.485
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,843,414
Number of Sequences: 62578
Number of extensions: 400556
Number of successful extensions: 1155
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 42
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)