Query 025445
Match_columns 252
No_of_seqs 127 out of 1124
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 05:54:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025445.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025445hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd06601 GH31_lyase_GLase GLase 100.0 6.6E-69 1.4E-73 484.3 24.5 243 2-245 24-330 (332)
2 PLN02763 hydrolase, hydrolyzin 100.0 1.7E-68 3.8E-73 527.2 24.7 244 2-245 201-499 (978)
3 cd06604 GH31_glucosidase_II_Ma 100.0 2.8E-67 6.1E-72 476.7 23.7 242 2-246 24-321 (339)
4 cd06603 GH31_GANC_GANAB_alpha 100.0 4.7E-66 1E-70 468.6 23.7 239 2-246 24-321 (339)
5 cd06600 GH31_MGAM-like This fa 100.0 6.8E-66 1.5E-70 463.5 21.9 220 2-246 24-299 (317)
6 cd06598 GH31_transferase_CtsZ 100.0 1.5E-65 3.3E-70 461.4 23.6 229 2-245 24-315 (317)
7 cd06593 GH31_xylosidase_YicI Y 100.0 8.6E-64 1.9E-68 448.5 23.3 226 2-245 24-304 (308)
8 cd06602 GH31_MGAM_SI_GAA This 100.0 7.6E-63 1.7E-67 447.2 23.1 219 2-246 24-303 (339)
9 cd06591 GH31_xylosidase_XylS X 100.0 3.2E-62 6.9E-67 440.2 23.4 229 2-239 24-318 (319)
10 PRK10658 putative alpha-glucos 100.0 6.6E-62 1.4E-66 472.1 22.8 227 2-245 283-564 (665)
11 cd06599 GH31_glycosidase_Aec37 100.0 1E-61 2.2E-66 436.5 20.4 228 2-240 29-317 (317)
12 COG1501 Alpha-glucosidases, fa 100.0 2.2E-61 4.7E-66 472.6 20.5 231 2-247 280-567 (772)
13 cd06594 GH31_glucosidase_YihQ 100.0 8.8E-61 1.9E-65 430.2 21.3 222 2-239 23-316 (317)
14 KOG1066 Glucosidase II catalyt 100.0 2.7E-62 5.8E-67 458.0 11.7 237 2-245 372-668 (915)
15 cd06597 GH31_transferase_CtsY 100.0 1.4E-59 3.1E-64 425.9 20.0 220 2-237 24-332 (340)
16 cd06589 GH31 The enzymes of gl 100.0 7.1E-59 1.5E-63 408.6 19.8 227 2-240 24-265 (265)
17 PF01055 Glyco_hydro_31: Glyco 100.0 2.2E-58 4.8E-63 431.7 18.6 238 2-246 43-337 (441)
18 cd06595 GH31_xylosidase_XylS-l 100.0 2E-57 4.3E-62 404.4 20.3 212 2-240 25-292 (292)
19 PRK10426 alpha-glucosidase; Pr 100.0 5.5E-56 1.2E-60 429.5 22.7 227 2-246 221-520 (635)
20 cd06592 GH31_glucosidase_KIAA1 100.0 1.5E-54 3.2E-59 387.8 17.9 208 2-240 30-303 (303)
21 KOG1065 Maltase glucoamylase a 100.0 3.1E-51 6.6E-56 393.0 15.4 232 2-244 311-601 (805)
22 cd06596 GH31_CPE1046 CPE1046 i 100.0 6.5E-44 1.4E-48 306.6 17.9 202 2-245 45-252 (261)
23 PF02065 Melibiase: Melibiase; 98.3 1.2E-05 2.7E-10 74.5 12.6 208 2-247 58-333 (394)
24 PLN02808 alpha-galactosidase 96.6 0.097 2.1E-06 48.6 14.9 180 2-217 49-270 (386)
25 PLN02692 alpha-galactosidase 96.5 0.19 4.1E-06 47.0 16.2 139 2-176 73-248 (412)
26 PLN02229 alpha-galactosidase 95.7 0.44 9.6E-06 44.8 14.4 179 2-216 80-299 (427)
27 PLN03231 putative alpha-galact 93.9 0.6 1.3E-05 43.0 10.2 93 49-175 153-255 (357)
28 PLN02219 probable galactinol-- 92.9 0.4 8.7E-06 47.8 7.7 28 2-29 216-243 (775)
29 PLN02711 Probable galactinol-- 92.3 0.68 1.5E-05 46.3 8.5 28 2-29 230-257 (777)
30 PLN02899 alpha-galactosidase 90.5 3.2 6.9E-05 40.8 10.9 89 50-175 186-286 (633)
31 PF05691 Raffinose_syn: Raffin 90.0 1.3 2.9E-05 44.3 8.1 28 2-29 212-239 (747)
32 PLN02684 Probable galactinol-- 89.2 1.8 4E-05 43.2 8.2 28 2-29 219-246 (750)
33 PLN02355 probable galactinol-- 88.8 1.9 4.1E-05 43.2 8.1 28 2-29 220-247 (758)
34 PLN02361 alpha-amylase 88.2 2.1 4.6E-05 40.1 7.7 83 1-83 75-183 (401)
35 PRK03705 glycogen debranching 88.0 2.2 4.7E-05 42.6 8.0 80 2-81 242-338 (658)
36 PRK14510 putative bifunctional 87.6 1.8 3.9E-05 46.1 7.6 82 1-82 246-345 (1221)
37 COG2342 Predicted extracellula 87.2 1.5 3.2E-05 38.9 5.6 42 42-84 110-151 (300)
38 TIGR02456 treS_nterm trehalose 86.1 2.5 5.4E-05 41.0 7.2 33 49-81 167-199 (539)
39 PRK10785 maltodextrin glucosid 85.7 2.9 6.2E-05 41.2 7.5 81 1-81 225-337 (598)
40 TIGR01370 cysRS possible cyste 85.0 1 2.2E-05 40.7 3.7 42 41-83 130-171 (315)
41 PF01120 Alpha_L_fucos: Alpha- 84.9 4 8.7E-05 37.3 7.6 75 2-83 138-217 (346)
42 TIGR02100 glgX_debranch glycog 84.7 3.8 8.2E-05 41.1 7.8 82 1-82 244-344 (688)
43 PLN00196 alpha-amylase; Provis 84.5 4.2 9E-05 38.4 7.6 81 2-82 92-206 (428)
44 PRK12313 glycogen branching en 83.4 4.8 0.0001 39.9 7.9 77 1-82 219-312 (633)
45 PF02638 DUF187: Glycosyl hydr 81.6 5.6 0.00012 35.8 7.1 77 2-79 70-161 (311)
46 TIGR02104 pulA_typeI pullulana 80.3 6.9 0.00015 38.6 7.7 80 2-81 229-321 (605)
47 PRK14706 glycogen branching en 79.6 22 0.00047 35.5 11.0 127 1-143 216-356 (639)
48 PLN02784 alpha-amylase 78.5 7.8 0.00017 39.7 7.5 83 1-83 567-677 (894)
49 PF14871 GHL6: Hypothetical gl 78.5 11 0.00023 29.6 6.9 76 2-80 44-132 (132)
50 PLN02960 alpha-amylase 77.8 23 0.00049 36.6 10.5 83 1-85 465-562 (897)
51 TIGR02402 trehalose_TreZ malto 77.6 8.4 0.00018 37.5 7.3 77 2-82 160-247 (542)
52 PLN03244 alpha-amylase; Provis 77.6 36 0.00078 34.9 11.6 138 1-151 440-594 (872)
53 PF00128 Alpha-amylase: Alpha 76.4 3.1 6.6E-05 36.1 3.6 35 48-82 137-171 (316)
54 TIGR01515 branching_enzym alph 75.6 9.1 0.0002 37.8 7.0 79 2-82 206-298 (613)
55 PRK09505 malS alpha-amylase; R 72.8 12 0.00025 37.7 7.0 29 54-82 435-464 (683)
56 PRK10933 trehalose-6-phosphate 72.3 5.1 0.00011 39.1 4.3 34 49-82 170-203 (551)
57 PLN02447 1,4-alpha-glucan-bran 70.8 53 0.0011 33.5 11.1 83 1-85 299-396 (758)
58 smart00812 Alpha_L_fucos Alpha 70.7 12 0.00026 34.8 6.3 71 2-82 128-203 (384)
59 PF13200 DUF4015: Putative gly 70.3 16 0.00035 33.1 6.7 80 2-81 61-146 (316)
60 PRK05402 glycogen branching en 69.1 20 0.00043 36.3 7.8 77 1-82 314-407 (726)
61 COG1523 PulA Type II secretory 68.6 20 0.00044 36.0 7.6 81 2-82 265-362 (697)
62 PRK12568 glycogen branching en 68.1 22 0.00048 36.0 7.8 76 2-82 319-411 (730)
63 TIGR02403 trehalose_treC alpha 67.5 7 0.00015 38.0 4.1 34 49-82 163-196 (543)
64 COG3345 GalA Alpha-galactosida 67.3 8.4 0.00018 37.5 4.4 205 2-248 309-584 (687)
65 KOG2366 Alpha-D-galactosidase 67.2 46 0.00099 31.0 8.9 170 4-211 62-281 (414)
66 PRK13840 sucrose phosphorylase 67.1 7.6 0.00016 37.4 4.2 33 49-81 163-195 (495)
67 TIGR02102 pullulan_Gpos pullul 65.8 29 0.00062 36.9 8.4 78 2-81 555-644 (1111)
68 TIGR03852 sucrose_gtfA sucrose 64.7 15 0.00033 35.2 5.6 35 47-81 157-191 (470)
69 PRK14705 glycogen branching en 63.8 75 0.0016 34.3 11.0 81 1-83 814-908 (1224)
70 PF13653 GDPD_2: Glycerophosph 62.8 8 0.00017 22.3 2.2 17 64-80 12-28 (30)
71 PF14885 GHL15: Hypothetical g 59.5 17 0.00036 26.0 3.8 34 48-81 42-76 (79)
72 PRK09441 cytoplasmic alpha-amy 56.9 14 0.0003 35.3 4.0 32 51-82 204-236 (479)
73 TIGR02103 pullul_strch alpha-1 56.6 38 0.00082 35.2 7.2 80 2-81 404-498 (898)
74 COG0366 AmyA Glycosidases [Car 49.4 22 0.00048 33.4 4.1 33 50-82 169-201 (505)
75 PRK10265 chaperone-modulator p 40.7 59 0.0013 24.1 4.4 47 197-251 19-65 (101)
76 COG1649 Uncharacterized protei 40.0 29 0.00063 32.7 3.2 36 46-81 172-208 (418)
77 COG2039 Pcp Pyrrolidone-carbox 40.0 20 0.00043 30.2 1.9 17 4-20 117-133 (207)
78 TIGR00756 PPR pentatricopeptid 38.5 33 0.00072 18.7 2.3 19 2-20 17-35 (35)
79 PF13199 Glyco_hydro_66: Glyco 37.7 52 0.0011 32.3 4.6 111 43-178 228-350 (559)
80 KOG0471 Alpha-amylase [Carbohy 36.6 44 0.00095 32.6 4.0 37 47-83 180-217 (545)
81 PF00331 Glyco_hydro_10: Glyco 36.0 32 0.00068 31.1 2.7 22 2-23 188-209 (320)
82 TIGR02455 TreS_stutzeri trehal 33.6 1.2E+02 0.0025 30.5 6.3 76 6-81 203-296 (688)
83 COG0296 GlgB 1,4-alpha-glucan 33.5 1.5E+02 0.0032 29.7 7.0 79 1-85 213-309 (628)
84 PF14872 GHL5: Hypothetical gl 31.8 1.3E+02 0.0029 30.1 6.3 40 47-86 356-395 (811)
85 PF03602 Cons_hypoth95: Conser 27.8 66 0.0014 26.5 3.1 28 4-31 101-128 (183)
86 smart00633 Glyco_10 Glycosyl h 27.6 60 0.0013 28.0 3.0 22 2-23 136-157 (254)
87 PF10566 Glyco_hydro_97: Glyco 27.2 1.8E+02 0.004 25.8 5.9 26 2-29 32-57 (273)
88 PF13041 PPR_2: PPR repeat fam 25.8 59 0.0013 20.1 2.0 21 1-21 19-39 (50)
89 PF07485 DUF1529: Domain of Un 25.3 71 0.0015 24.8 2.7 24 2-25 68-91 (123)
90 PF01535 PPR: PPR repeat; Int 23.9 73 0.0016 16.9 2.0 15 2-16 17-31 (31)
91 KOG2356 Transcriptional activa 23.8 68 0.0015 29.0 2.6 37 3-39 170-210 (366)
92 PF13709 DUF4159: Domain of un 23.2 1.9E+02 0.0041 24.4 5.1 70 155-244 11-80 (207)
93 COG3510 CmcI Cephalosporin hyd 23.1 1E+02 0.0022 26.3 3.3 49 198-246 162-210 (237)
94 PLN02982 galactinol-raffinose 22.6 96 0.0021 31.8 3.6 28 2-29 239-266 (865)
95 smart00459 Sorb Sorbin homolog 21.8 1.1E+02 0.0025 19.8 2.6 25 50-74 21-45 (50)
96 COG3693 XynA Beta-1,4-xylanase 20.9 84 0.0018 28.7 2.6 22 3-24 205-226 (345)
97 PF08532 Glyco_hydro_42M: Beta 20.6 62 0.0014 27.0 1.7 26 2-27 30-55 (207)
98 COG3706 PleD Response regulato 20.3 1E+02 0.0022 29.3 3.1 37 2-39 286-322 (435)
99 PLN02877 alpha-amylase/limit d 20.2 5.4E+02 0.012 27.2 8.5 81 2-82 466-562 (970)
No 1
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=6.6e-69 Score=484.35 Aligned_cols=243 Identities=32% Similarity=0.643 Sum_probs=214.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC-C----------------------------cccCCCcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA-W----------------------------EVWPGPCVFPDY 52 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~-w----------------------------~~w~g~~~~~Df 52 (252)
+||++++++||+++||||+|++|++|++++++||||++ + ..||+.+++|||
T Consensus 24 ~ev~~v~~~~r~~~IP~D~i~lDidy~~~~~~Ft~d~~~FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDf 103 (332)
T cd06601 24 SDLEEVVEGYRDNNIPLDGLHVDVDFQDNYRTFTTNGGGFPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDL 103 (332)
T ss_pred HHHHHHHHHHHHcCCCCceEEEcCchhcCCCceeecCCCCCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCC
Confidence 68999999999999999999999999999999999987 1 678889999999
Q ss_pred CChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCC--CCCCCCCccCCCCC--CCCccccchhhhhhHHHHHHHHHH
Q 025445 53 TQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVT--KTMPESNIHRGDDE--IGGCQNHSYYHNVYGMLMARSTYE 128 (252)
Q Consensus 53 t~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~--~~~p~~~~~~~~~~--~~g~~~~~~~hn~y~~~~~~a~~~ 128 (252)
|||+|++||+++++.+++.|||++|+|||||+.++... .++|.+..+..... ..+...|.++||+|+++++++++|
T Consensus 104 tnp~ar~wW~~~~~~l~~~Gv~~~W~DmnEp~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~hN~Y~~~~~~a~~e 183 (332)
T cd06601 104 GRPDVREWWGNQYKYLFDIGLEFVWQDMTTPAIMPSYGDMKGFPPRLLVTDDSYENNVKRKPAIELWNLYSYNLHKATWH 183 (332)
T ss_pred CCHHHHHHHHHHHHHHHhCCCceeecCCCCcccccCCCccCCCCCcccccCCccccccCCchHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999886422 45666554432110 001235789999999999999999
Q ss_pred HHHhhc--CCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCCC----------
Q 025445 129 GMKLAD--KDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN---------- 196 (252)
Q Consensus 129 ~~~~~~--~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~~---------- 196 (252)
++++.. +++|||++|||+++|+|||+++|+||+.|+|+.|+.+|+++|++||+|+||||+|||||.++
T Consensus 184 ~~~~~~~~~~~RpfiltRS~~aGsqrY~~~WsGDn~stW~~L~~si~~~L~~~lsGip~~g~DIGGF~g~~~~~~~~~~~ 263 (332)
T cd06601 184 GLNNLNARKNKRNFIIGRGSYAGMQRFAGLWTGDNSSSWDFLQINIAQVLNLGMSGLPIAGSDIGGFTSYDGENSIQRTW 263 (332)
T ss_pred HHHHhhcCCCCCcEEEEecCcCccCCcCceeCCCcccCHHHHHHHHHHHHHhhhcCCCccCCccCCcCCCCcccccccCC
Confidence 998765 78999999999999999999999999999999999999999999999999999999999986
Q ss_pred CChhHHHHHHhhccccccccccCCCC--CCCCCC-----------------cccChhHHHHHHHHHHH
Q 025445 197 ATPRLFGRWMGIGAMFPFCRGHTESD--AIDHEP-----------------WSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 197 ~~~eL~~RW~Q~~~f~P~~r~h~~~~--~~~~eP-----------------w~~~~~~~~~~r~~~~l 245 (252)
+++|||+||+|+|+|+|+||+|+... +..+|| |.+ +++++++|++|++
T Consensus 264 ~~~EL~~RW~Q~GaF~P~~R~H~~~~~~~~~~ep~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~~i~~ 330 (332)
T cd06601 264 CNPELLIRWYQAGFLLPWFRNHYDRKIRQKFQEPAKYFQEPYAHLIDYEQLYLY-ENVPEICRKYVEL 330 (332)
T ss_pred CCHHHHHHHHHHhcCCceeccCCCCccCcccCCccccccccccccccccccccc-HHHHHHHHHHHHh
Confidence 57999999999999999999999754 467787 555 9999999999986
No 2
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=100.00 E-value=1.7e-68 Score=527.22 Aligned_cols=244 Identities=80% Similarity=1.451 Sum_probs=231.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC--------------------C---------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA--------------------W--------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~--------------------w--------------------- 40 (252)
++|++++++||+++||||+||+|++|++++++||||++ |
T Consensus 201 ~eV~eva~~fre~~IP~DvIwlDidYm~g~~~FTwD~~rFPdP~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~ 280 (978)
T PLN02763 201 KRVAEIARTFREKKIPCDVVWMDIDYMDGFRCFTFDKERFPDPKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCEN 280 (978)
T ss_pred HHHHHHHHHHHHcCCCceEEEEehhhhcCCCceeECcccCCCHHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhc
Confidence 68999999999999999999999999999999999987 0
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
.+|||.+++||||||+|++||+++++++++.||||||+|||||+.|+....++|.+..|.+....+
T Consensus 281 ~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~g 360 (978)
T PLN02763 281 DVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELG 360 (978)
T ss_pred CeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccC
Confidence 489999999999999999999999999999999999999999999987667889888888765556
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCcc
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 186 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~ 186 (252)
|..+|.++||+|+++++|+++|++++..+++|||+++||+|+|+|||+++|+||+.++|++|+.+|+++|++|+||+||+
T Consensus 361 G~~~h~~~HNlYgll~akatyEgl~~~~~~kRPFilTRSgfaGsQRYaa~WtGDn~SsWe~L~~sI~~~LnlgLSGipf~ 440 (978)
T PLN02763 361 GVQNHSHYHNVYGMLMARSTYEGMLLANKNKRPFVLTRAGFIGSQRYAATWTGDNLSNWEHLHMSIPMVLQLGLSGQPLS 440 (978)
T ss_pred CccCHHHHhhhhHHHHHHHHHHHHHHhCCCCCcEEEEccccCcCCCCceEECCCccCCHHHHHHHHHHHHHHHhcCCccc
Confidence 66689999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHH
Q 025445 187 GPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 187 g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l 245 (252)
|+|||||.+++++|||+||+|+|+|+|+||+|+..+..++|||+|++++++++|++++|
T Consensus 441 G~DIGGF~G~~~~ELy~RW~Q~GaF~P~fR~Hs~~gt~~qEPW~fgeev~~i~R~ai~L 499 (978)
T PLN02763 441 GPDIGGFAGDATPKLFGRWMGVGAMFPFARGHSEQGTIDHEPWSFGEECEEVCRLALKR 499 (978)
T ss_pred ccccCCCCCCCCHHHHHHHHHHhhhhHHhhhccCCCCCCcCCeecChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988778999999999999999999975
No 3
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=100.00 E-value=2.8e-67 Score=476.73 Aligned_cols=242 Identities=59% Similarity=1.100 Sum_probs=224.1
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC---------------------C--------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA---------------------W-------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~---------------------w-------------------- 40 (252)
++|+++++++|+++||||+|++|++|++++++|+||++ |
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~fPdp~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~ 103 (339)
T cd06604 24 EEVREIADEFRERDIPCDAIYLDIDYMDGYRVFTWDKERFPDPKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLEN 103 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECchhhCCCCceeeccccCCCHHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHC
Confidence 68999999999999999999999999999999999987 1
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCC-CCCCCCccCCCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTK-TMPESNIHRGDDEI 105 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~-~~p~~~~~~~~~~~ 105 (252)
.+|||.+++||||||+|++||+++++++++.||||||+|+|||+.++.... ++|.+..|.+..
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~-- 181 (339)
T cd06604 104 DYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDG-- 181 (339)
T ss_pred CeEEECCCCCEEEEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCCC--
Confidence 489999999999999999999999999999999999999999998865443 378777775432
Q ss_pred CCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCc
Q 025445 106 GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPF 185 (252)
Q Consensus 106 ~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~ 185 (252)
+...+.++||+|++++++++++++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+.+|++|++|+|+
T Consensus 182 -~~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~ssW~~L~~~i~~~l~~~l~G~~~ 260 (339)
T cd06604 182 -GGGTHEEVHNVYGLLMARATYEGLKKARPNERPFILTRAGYAGIQRYAAVWTGDNRSSWEHLRLSIPMLLNLGLSGVPF 260 (339)
T ss_pred -CCCcHhHhcchhhHHHHHHHHHHHHHhCCCCCcEEEEecccccccccccccCCcccCCHHHHHHHHHHHHHHHhcCCcc
Confidence 1246789999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 186 SGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 186 ~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
+|+|||||.+++++|||+||+|+|+|+|+||+|+..+..++|||.|++++++++|++++|-
T Consensus 261 ~g~DIGGf~~~~~~EL~~RW~Q~g~f~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 321 (339)
T cd06604 261 VGADIGGFGGDPSPELLVRWMQLGAFFPFFRNHSAKGTRDQEPWAFGEEVEEIAREAIKLR 321 (339)
T ss_pred cccccCCCCCCCCHHHHHHHHHHHhccchhhccCCCCCCCCCCeecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877789999999999999999999873
No 4
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=100.00 E-value=4.7e-66 Score=468.63 Aligned_cols=239 Identities=47% Similarity=0.856 Sum_probs=222.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC---------------------C--------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA---------------------W-------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~---------------------w-------------------- 40 (252)
+||++++++||+++||||+|++|++|+.++++|+||++ |
T Consensus 24 ~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~ 103 (339)
T cd06603 24 EDVKEVDAGFDEHDIPYDVIWLDIEHTDGKRYFTWDKKKFPDPEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDK 103 (339)
T ss_pred HHHHHHHHHHHHcCCCceEEEEChHHhCCCCceEeCcccCCCHHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHC
Confidence 78999999999999999999999999999999999987 1
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHh---CCccEEEecCCCCcccCCCCCCCCCCCccCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIY---NGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDD 103 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~---~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~ 103 (252)
.+|||.+++||||||+|++||++++++++. .|++|+|+|++||+.|+..+.++|.+..+.+.
T Consensus 104 g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~- 182 (339)
T cd06603 104 GYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGG- 182 (339)
T ss_pred CeEEECCCCCEEEEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCC-
Confidence 479999999999999999999999999874 79999999999999988766678887766541
Q ss_pred CCCCccccchhhhhhHHHHHHHHHHHHHhhcC-CCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccC
Q 025445 104 EIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 182 (252)
Q Consensus 104 ~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~-~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G 182 (252)
..+.++||+|++++++++++++++..+ ++|||+++||+++|+|||+++|+||+.|+|++|+.+|+.+|++|++|
T Consensus 183 -----~~~~~~hN~y~~~~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~L~~~l~G 257 (339)
T cd06603 183 -----IEHREVHNIYGLYMHMATFDGLLKRSEGNKRPFVLTRSFFAGSQRYAAIWTGDNTATWEHLKISIPMLLSLNICG 257 (339)
T ss_pred -----CcHHHHhhHhHHHHHHHHHHHHHHhhccCCceEEEEecccccccceeeeeCCCccCCHHHHHHHHHHHHHHhhcC
Confidence 467899999999999999999998764 78999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 183 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 183 ~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
+|++|+|||||.+++++|||+||+|+|+|+|+||+|+..+...+|||.|++++++++|++++|-
T Consensus 258 ~~~~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 321 (339)
T cd06603 258 IPFCGADVGGFFGNPDEELLVRWYQAGAFYPFFRAHAHIDTKRREPWLFGEEYTSIIREAIRLR 321 (339)
T ss_pred ccccCCccCCcCCCCCHHHHHHHHHHhhcCceeecCCCCCCCCCCCeecChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877778999999999999999999974
No 5
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=100.00 E-value=6.8e-66 Score=463.54 Aligned_cols=220 Identities=44% Similarity=0.876 Sum_probs=208.7
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC---------------------C--------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA---------------------W-------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~---------------------w-------------------- 40 (252)
++|+++++++|+++||||+|++|++|++++++|+||++ |
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~ 103 (317)
T cd06600 24 DKVVEVVDIMQKEGFPYDVVFLDIHYMDSYRLFTWDPYRFPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDK 103 (317)
T ss_pred HHHHHHHHHHHHcCCCcceEEEChhhhCCCCceeechhcCCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHC
Confidence 68999999999999999999999999999999999987 0
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHH-hCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEI 105 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~ 105 (252)
.+|||.+++||||||+|++||++++++++ +.||||||+|+|||+.+
T Consensus 104 ~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~------------------- 164 (317)
T cd06600 104 GKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDF------------------- 164 (317)
T ss_pred CEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccH-------------------
Confidence 57999999999999999999999999987 79999999999998532
Q ss_pred CCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCc
Q 025445 106 GGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPF 185 (252)
Q Consensus 106 ~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~ 185 (252)
.++||+|++++++++++++++..+++|||+++||+++|+|||+++|+||+.|+|++|+.+|+.+|++|++|+|+
T Consensus 165 ------~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~qry~~~W~GD~~s~W~~L~~~i~~~l~~gl~G~p~ 238 (317)
T cd06600 165 ------EKVHNLYGLYEAMATAEGFRTSHPRNRIFILTRSGFAGSQKYAAIWTGDNTASWDDLKLSIPLVLGLSISGIPF 238 (317)
T ss_pred ------HHhcchhhHHHHHHHHHHHHHhcCCCCceEEEeccccccCCccceECCcccccHHHHHHHHHHHHHHHhcCCCc
Confidence 35799999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 186 SGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 186 ~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
+|+|||||.+++++|||+||+|+|+|+|+||+|+.....++|||.|++++++++|+++++-
T Consensus 239 ~g~DiGGf~~~~~~EL~~RW~Q~gaf~P~~R~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 299 (317)
T cd06600 239 VGCDIGGFQGDNSMELLVRWYQLGAFFPFYRSHKATDGKDTEPVFFPDYYKEKVREIVELR 299 (317)
T ss_pred cCcccCCCCCCCCHHHHHHHHHHhhcCceeeccCCCCCCCCCCeecCcHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877779999999999999999999874
No 6
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.5e-65 Score=461.39 Aligned_cols=229 Identities=33% Similarity=0.623 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC------CccceeecCC---------------------C--------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD------GFRCFTFDKA---------------------W-------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~------~~~~f~~d~~---------------------w-------------- 40 (252)
++|++++++||+++||||+|++|++|++ .+++|+||++ |
T Consensus 24 ~~v~~~~~~~~~~~iP~d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e 103 (317)
T cd06598 24 QEVDDTIKTLREKDFPLDAAILDLYWFGKDIDKGHMGNLDWDRKAFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGE 103 (317)
T ss_pred HHHHHHHHHHHHhCCCceEEEEechhhcCcccCCceeeeEeccccCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHH
Confidence 6899999999999999999999999987 4569999987 0
Q ss_pred -------------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCC
Q 025445 41 -------------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRG 101 (252)
Q Consensus 41 -------------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~ 101 (252)
.+|||.+++||||||+|++||+++++++.+.||||||+|+|||+.+ |.+..+.+
T Consensus 104 ~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------~~~~~~~~ 176 (317)
T cd06598 104 AVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVH-------PPDMCHHK 176 (317)
T ss_pred HHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCcccc-------CCccccCC
Confidence 5899999999999999999999999999899999999999999764 33333321
Q ss_pred CCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcce-eecCCCCCChhHHHHHHHHHHHhhc
Q 025445 102 DDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWEHLHMSISMVLQLGL 180 (252)
Q Consensus 102 ~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~-~W~GD~~ssW~~L~~~I~~~l~~~l 180 (252)
..+.++||+|+++++++++|++++..+++|||+++||+++|+|||++ +|+||+.++|++|+.+|+.+|++|+
T Consensus 177 -------g~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~~~~~Rs~~~Gsqry~~~~WsGD~~s~W~~L~~~i~~~l~~~l 249 (317)
T cd06598 177 -------GKAAEVHNIYGHLWAKSIYEGYQQNYPNERPFILMRAGFAGSQRYGVIPWSGDVGRTWDGLKSQPNAALQMSM 249 (317)
T ss_pred -------CcHhHHhhHHHHHHHHHHHHHHHHhcCCCCeEEEEecCcCccccCcCCccCCCCcCCHHHHHHHHHHHHhhhc
Confidence 14578999999999999999999888889999999999999999985 8999999999999999999999999
Q ss_pred cCCCccccCCCCCCCC--CChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHH
Q 025445 181 SGQPFSGPDIGGFDGN--ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 181 ~G~~~~g~DigGf~~~--~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l 245 (252)
+|+|++|+|||||.++ +++|||+||+|+|+|+|+||+|+..+ .++|||.|++++++++|++|+|
T Consensus 250 ~G~~~~g~DIGGf~~~~~~~~EL~~RW~q~g~f~P~~R~H~~~~-~~~ePw~~~~~~~~~~r~~~~l 315 (317)
T cd06598 250 SGIDYYHSDIGGFAGGDELDPELYTRWFQYGAFDPPFRPHAQNA-IPPEPVFYSIGTKNINRENIRL 315 (317)
T ss_pred cCCcccCCCcCCcCCCCCCCHHHHHHHHHhccCCcccccCCCCC-CCCCCCcCChHHHHHHHHHHHh
Confidence 9999999999999997 89999999999999999999999865 4789999999999999999986
No 7
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=8.6e-64 Score=448.47 Aligned_cols=226 Identities=32% Similarity=0.615 Sum_probs=208.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCcc--ceeecCC---------------------C------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKA---------------------W------------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~--~f~~d~~---------------------w------------------ 40 (252)
++|+++++++|++|||||+|++|++|+.+++ +|+||++ |
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~~~f~~d~~~FPd~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~ 103 (308)
T cd06593 24 EEVNEFADGMRERNLPCDVIHLDCFWMKEFQWCDFEFDPDRFPDPEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEK 103 (308)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccccCCcceeeEECcccCCCHHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHC
Confidence 6899999999999999999999999998876 9999987 1
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
.+|||.+++||||||+|++||+++++++++.||||+|+|++|+. |.+..+.+
T Consensus 104 g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~---------p~~~~~~~----- 169 (308)
T cd06593 104 GYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERI---------PTDVVYYD----- 169 (308)
T ss_pred CeEEECCCCCeeeecccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCC---------CccccccC-----
Confidence 47899999999999999999999999999999999999999973 44433221
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCcc
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 186 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~ 186 (252)
| ..+.++||+|+++++|+++|++++..+.+|||+++||+++|+|||+.+|+||+.++|++|+.+|+.+|++|++|+|++
T Consensus 170 g-~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~~Rs~~~Gsqry~~~w~GD~~s~w~~L~~~i~~~l~~~l~G~~~~ 248 (308)
T cd06593 170 G-SDGEKMHNYYALLYNKAVYEATKEVKGEGEAVVWARSAWAGSQKYPVHWGGDCESTFEGMAESLRGGLSLGLSGFGFW 248 (308)
T ss_pred C-CCcceeeeHHHHHHHHHHHHHHHHhcCCCCeEEEEcCCccccccCCCEECCCcccCHHHHHHHHHHHHhccccCCcee
Confidence 1 245789999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHH
Q 025445 187 GPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 187 g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l 245 (252)
|+|||||.+++++|||+||+|+|+|+|+||+|+.. .+|||.|++++++++|++++|
T Consensus 249 g~DigGf~~~~~~EL~~RW~q~gaf~P~~r~h~~~---~~~Pw~~~~~~~~~~r~~~~l 304 (308)
T cd06593 249 SHDIGGFEGTPPPDLYKRWAQFGLLSSHSRLHGSG---YREPWEYGEEAVDVVRKFAKL 304 (308)
T ss_pred cCccCCcCCCCCHHHHHHHHHhCcCCcccccCCCC---CCCCcccChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864 899999999999999999986
No 8
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=100.00 E-value=7.6e-63 Score=447.24 Aligned_cols=219 Identities=44% Similarity=0.835 Sum_probs=206.7
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC-----------------------C------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA-----------------------W------------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~-----------------------w------------------ 40 (252)
++|++++++||+++||||+|++|++|++++++|+||++ |
T Consensus 24 ~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~ 103 (339)
T cd06602 24 DEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYD 103 (339)
T ss_pred HHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHH
Confidence 68999999999999999999999999999999999987 0
Q ss_pred -------------------cccCCCcCCCCCCChhHHHHHHHHHHHHHh-CCccEEEecCCCCcccCCCCCCCCCCCccC
Q 025445 41 -------------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESNIHR 100 (252)
Q Consensus 41 -------------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~ 100 (252)
.+|||.+++||||||+|++||+++++++++ .||||||+|++||+.+
T Consensus 104 e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~-------------- 169 (339)
T cd06602 104 RGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNF-------------- 169 (339)
T ss_pred HHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchH--------------
Confidence 478999999999999999999999999875 8999999999998532
Q ss_pred CCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhc
Q 025445 101 GDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGL 180 (252)
Q Consensus 101 ~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l 180 (252)
.++||+|++++++++++++++. +++|||+++||+++|+|||+++|+||+.|+|++|+.+|+++|++|+
T Consensus 170 -----------~~~hN~y~~~~~~~~~~~~~~~-~~~r~~~~sRs~~~G~qry~~~w~GD~~s~W~~L~~~i~~~l~~~~ 237 (339)
T cd06602 170 -----------YDVHNLYGLSEAIATYKALQSI-PGKRPFVISRSTFPGSGRYAGHWLGDNASTWEDLRYSIIGMLEFNL 237 (339)
T ss_pred -----------hhhcchhhHHHHHHHHHHHHhc-CCCCCEEEEecCcccccccceeECCCccCCHHHHHHHHHHHHHHHh
Confidence 3479999999999999999887 7899999999999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 181 SGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 181 ~G~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
+|+||+|+|||||.+++++|||+||+|+|+|+|+||+|+..+...+|||.|++++++++|++++|-
T Consensus 238 sG~~~~~~DigGf~g~~~~EL~~RW~Q~~~f~P~~r~H~~~~~~~~ePw~~~~~~~~~~r~~~~lR 303 (339)
T cd06602 238 FGIPMVGADICGFNGDTTEELCARWMQLGAFYPFSRNHNDIGAIPQEPYVWGPSVADAARKALNIR 303 (339)
T ss_pred cCCCcccCCCCCCCCCCCHHHHHHHHHHHhhCceeeccCCCCCCCcCCccCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877778999999999999999999875
No 9
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=100.00 E-value=3.2e-62 Score=440.15 Aligned_cols=229 Identities=33% Similarity=0.529 Sum_probs=200.7
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCcc--ceeecCC---------------------C------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFR--CFTFDKA---------------------W------------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~--~f~~d~~---------------------w------------------ 40 (252)
++|++++++||+++||||+|++|++|+.+++ +|+||++ |
T Consensus 24 ~ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~ 103 (319)
T cd06591 24 EELLDVAKEYRKRGIPLDVIVQDWFYWPKQGWGEWKFDPERFPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEK 103 (319)
T ss_pred HHHHHHHHHHHHhCCCccEEEEechhhcCCCceeEEEChhhCCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHC
Confidence 7899999999999999999999999999888 9999987 0
Q ss_pred -------------cccCCCcCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 41 -------------EVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 41 -------------~~w~g~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
.+|||.+++||||||+|++||++++++ +.+.||||||+|++||+.+.... ...+..+ ..
T Consensus 104 g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~--~~~~~~~----~~- 176 (319)
T cd06591 104 GYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDF--GLDNYRY----HL- 176 (319)
T ss_pred CEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcc--cccCccc----CC-
Confidence 368999999999999999999888876 55899999999999998653211 0001111 11
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcce-eecCCCCCChhHHHHHHHHHHHhhccCCCc
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWEHLHMSISMVLQLGLSGQPF 185 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~-~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~ 185 (252)
..+.++||+|+++++|+++|++++..+++|||+++||+++|+|||++ +|+||+.|+|++|+.+|+.+|++|++|+|+
T Consensus 177 --~~~~~~hN~y~~~~~~~~~e~~~~~~~~~r~f~~sRs~~~Gsqry~~~~W~GD~~s~w~~L~~~i~~~l~~glsG~~~ 254 (319)
T cd06591 177 --GPGLEVGNAYPLMHAKGIYEGQRAAGDEKRVVILTRSAWAGSQRYGALVWSGDIDSSWETLRRQIAAGLNMGLSGIPW 254 (319)
T ss_pred --CCchhhhhhhHHHHHHHHHHHHHHhCCCCCceEEEeccccccccccCceeCCCccccHHHHHHHHHHHHHHhhcCCcc
Confidence 14578999999999999999999887789999999999999999985 999999999999999999999999999999
Q ss_pred cccCCCCCCCCCC---------hhHHHHHHhhccccccccccCCCCC-CCCCCcccChhHHHHH
Q 025445 186 SGPDIGGFDGNAT---------PRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCS 239 (252)
Q Consensus 186 ~g~DigGf~~~~~---------~eL~~RW~Q~~~f~P~~r~h~~~~~-~~~ePw~~~~~~~~~~ 239 (252)
+|+|||||.++++ +|||+||+|+|+|+|+||+|+.... ..+|||.|++++++++
T Consensus 255 ~g~DiGGF~~~~~~~~~~~~~~~EL~~RW~q~gaf~P~~R~H~~~~~~~~~ePw~~g~e~~~~~ 318 (319)
T cd06591 255 WTTDIGGFFVGNPPAGLDDPEYRELYVRWFQFGAFCPVMRSHGTREPREINEFWSYGEEVYDIL 318 (319)
T ss_pred ccCCcCCcCCCCccccccCCccHHHHHHHHHHhcCccccccCCCCCCCCCCcCcCCChHHHHhh
Confidence 9999999998754 8999999999999999999998654 4579999999999875
No 10
>PRK10658 putative alpha-glucosidase; Provisional
Probab=100.00 E-value=6.6e-62 Score=472.13 Aligned_cols=227 Identities=26% Similarity=0.529 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC--ccceeecCC---------------------C------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKA---------------------W------------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~--~~~f~~d~~---------------------w------------------ 40 (252)
++|++++++||+++||||+|++|++||++ +++|+||++ |
T Consensus 283 ~~v~~~~~~~r~~~iP~d~i~lD~~w~~~~~~~~f~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~ 362 (665)
T PRK10658 283 ATVNSFIDGMAERDLPLHVFHFDCFWMKEFQWCDFEWDPRTFPDPEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEK 362 (665)
T ss_pred HHHHHHHHHHHHcCCCceEEEEchhhhcCCceeeeEEChhhCCCHHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHC
Confidence 46999999999999999999999999997 469999987 1
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
..|||.+++||||||+|++||.+++++++++||||||+|++|+ +|.+..+..
T Consensus 363 gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~---------~p~d~~~~~----- 428 (665)
T PRK10658 363 GYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGER---------IPTDVVWFD----- 428 (665)
T ss_pred CeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCce---------eeccceecC-----
Confidence 4799999999999999999999999999999999999999997 344544432
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCcc
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 186 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~ 186 (252)
| ..+.++||+|+++++|+++|++++..+.+|+|+++||+++|+|||+++|+||+.|+|++|+.+|+++|++|+||+|||
T Consensus 429 G-~~~~~~hN~Y~~l~~ka~~e~l~~~~~~~r~~i~tRs~~aGsQry~~~WsGD~~stw~~l~~si~~~Ls~glsG~~~~ 507 (665)
T PRK10658 429 G-SDPQKMHNYYTYLYNKTVFDVLKETRGEGEAVLFARSATVGGQQFPVHWGGDCYSNYESMAESLRGGLSLGLSGFGFW 507 (665)
T ss_pred C-CcHHHhcchhHHHHHHHHHHHHHHhcCCCceEEEEecccCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHhcCCccc
Confidence 1 246789999999999999999999888899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHH
Q 025445 187 GPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 187 g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l 245 (252)
|+|||||.+.+++|||+||+|+|+|+|+||+|+.. ..++||.|++++++++|++++|
T Consensus 508 g~DIGGF~g~~~~ELy~RW~Q~g~f~P~~R~Hg~~--~~~ePW~fg~e~~~i~r~~i~l 564 (665)
T PRK10658 508 SHDIGGFENTATADVYKRWCAFGLLSSHSRLHGSK--SYRVPWAYDEEAVDVVRFFTKL 564 (665)
T ss_pred cCccCCCCCCCCHHHHHHHHHhcccChhhcccCCC--CCcCCcccCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864 4699999999999999999996
No 11
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1e-61 Score=436.54 Aligned_cols=228 Identities=35% Similarity=0.626 Sum_probs=197.5
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC----ccceeecCC---------------------C----------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKA---------------------W---------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~----~~~f~~d~~---------------------w---------------- 40 (252)
++|+++++++|+++||||+|++|++|++. +++|+||++ |
T Consensus 29 ~~v~~~~~~~r~~~iP~d~i~ld~~~~~~~~~~~~~f~~d~~~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~ 108 (317)
T cd06599 29 EALLEFIDKCREHDIPCDSFHLSSGYTSIEGGKRYVFNWNKDRFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELK 108 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEeccccccCCCceeeeecCcccCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHH
Confidence 58999999999999999999999999975 568999987 0
Q ss_pred -----------------cccCCCcCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCCcccCCCCCCCCCCCccCCC
Q 025445 41 -----------------EVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGD 102 (252)
Q Consensus 41 -----------------~~w~g~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~ 102 (252)
.+|+|.+++||||||+|++||++++++ +.+.||||||+|++||+.+ +.+..+...
T Consensus 109 ~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~-------~~~~~~~~~ 181 (317)
T cd06599 109 EAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIW-------DDDAVCDGF 181 (317)
T ss_pred HCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccC-------CCcceecCC
Confidence 488999999999999999999999955 6689999999999999642 222222211
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccC
Q 025445 103 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 182 (252)
Q Consensus 103 ~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G 182 (252)
+ .+ ..+.++||+|++++++++++++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+.+|++|++|
T Consensus 182 g-~~--~~~~~~~n~y~~l~~~a~~~~~~~~~~~~r~f~ltRs~~~G~qry~~~WsGD~~s~W~~L~~~i~~~L~~glsG 258 (317)
T cd06599 182 G-KP--GTIGELRPVQPNLMARASHEAQAEHYPNRRPYIVSRSGFAGIQRYAQTWSGDNRTSWKTLRYNIAMGLGMGLSG 258 (317)
T ss_pred C-Cc--cchhhcccchHHHHHHHHHHHHHHhCCCCCcEEEEcCCcccccCCcCeeCCCcccCHHHHHHHHHHHHhhhccC
Confidence 1 11 13356899999999999999999888889999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCC-CChhHHHHHHhhccccccccccCCCC-CCCCCCcccChhHHHHHH
Q 025445 183 QPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESD-AIDHEPWSFGEEVLFCSS 240 (252)
Q Consensus 183 ~~~~g~DigGf~~~-~~~eL~~RW~Q~~~f~P~~r~h~~~~-~~~~ePw~~~~~~~~~~r 240 (252)
+||+|+|||||.++ +++|||+||+|+|+|+|+||+|+..+ ...||||+|++ +++++|
T Consensus 259 ~~~~g~DIGGF~~~~~~~ELy~RW~Q~g~F~P~~R~H~~~~~~~~~ePw~f~~-~~~~~~ 317 (317)
T cd06599 259 VANIGHDIGGFAGPAPEPELFVRWVQNGIFQPRFCIHSWNTDNTVTEPWMYPE-VTDYIR 317 (317)
T ss_pred CcccccccCccCCCCCCHHHHHHHHHHccCCHhhhcccCCCCCCCcCCeeccc-chhhcC
Confidence 99999999999986 79999999999999999999999754 36899999954 555543
No 12
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-61 Score=472.61 Aligned_cols=231 Identities=45% Similarity=0.858 Sum_probs=212.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCC-CCCCccceeecCC-----------------------------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDID-YMDGFRCFTFDKA----------------------------------------- 39 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~-~~~~~~~f~~d~~----------------------------------------- 39 (252)
++|.++++.+++++||||+|++|++ |++.+++|+||+.
T Consensus 280 ~~v~~~i~~~~~~~IP~d~~~lD~~~~~~~~~~F~wd~~~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~G 359 (772)
T COG1501 280 DEVLEFIDEMRERDIPLDVFVLDIDFWMDNWGDFTWDPDRFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKG 359 (772)
T ss_pred HHHHHHHhhcccccCcceEEEEeehhhhccccceEECcccCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCC
Confidence 6899999999999999999999997 9999999999988
Q ss_pred ------------CcccCCCcCCCCCCChhHHHHHHH-HHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 40 ------------WEVWPGPCVFPDYTQSKVRSWWGS-LVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 40 ------------w~~w~g~~~~~Dft~p~a~~ww~~-~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
+..||+.++++|||||+|++||++ ..+.++++||||||+|||||..++.. ..+.+
T Consensus 360 y~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~-------~~~~g----- 427 (772)
T COG1501 360 YFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGD-------GFGNG----- 427 (772)
T ss_pred eEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCcccccc-------ccccc-----
Confidence 269999999999999999999995 55668899999999999999876421 11111
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCcc
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFS 186 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~ 186 (252)
..+.++||+|++++++++++++++..+++|||++|||+++|+|||+.+|+||+.++|++||.+|+++|++|+||+|+|
T Consensus 428 --~~~~~~~N~yp~~~~~a~~~~~~~~~~~~r~~~lsRsg~aG~Q~~~~~WsGD~~s~wd~l~~si~~~Ls~~~sGi~~w 505 (772)
T COG1501 428 --IDHEEMHNLYPLLYAKAVYEALKELGGNERPFILSRSGYAGSQRYAAHWSGDNRSSWDSLRESIPAGLSLSLSGIPFW 505 (772)
T ss_pred --cCHHHHhcchhHHHHHHHHHHHHhhcCCCceEEEEecccccceeccceeCCccccchHHHHhhHHhhhchhccCCccc
Confidence 467889999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC--CCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHHh
Q 025445 187 GPDIGGFDG--NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 247 (252)
Q Consensus 187 g~DigGf~~--~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~~ 247 (252)
|+|||||.| .+++|||+||+|+|+|+|+||.|+. .+.+++||.|++++.+++|++++|.-
T Consensus 506 g~DiGGF~g~~~~~~EL~~RW~q~g~F~P~~R~H~~-d~~~rePW~~~e~~~~i~r~~~~lR~ 567 (772)
T COG1501 506 GHDIGGFTGGDDPTAELYIRWYQFGAFSPIFRLHGN-DNIPREPWAFGEETEEIVREYIQLRY 567 (772)
T ss_pred cccccccCCCCCCCHHHHHHHHHHHhcCchhhhhCC-CCCCCCCccCChhHHHHHHHHHHHHH
Confidence 999999999 6899999999999999999999998 56799999999999999999999853
No 13
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=100.00 E-value=8.8e-61 Score=430.16 Aligned_cols=222 Identities=26% Similarity=0.473 Sum_probs=197.6
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC---------ccceeecCC---------------------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKA--------------------------------- 39 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~---------~~~f~~d~~--------------------------------- 39 (252)
++|+++++++++++||||+|++| +|+.. +.+|+||++
T Consensus 23 ~~v~~~~~~~~~~~iP~d~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPdp~~mi~~Lh~~G~~~~~~i~P~v~~~~~~ 101 (317)
T cd06594 23 DKVLEALEKARAAGVKVAGLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPGLDELIEELKARGIRVLTYINPYLADDGPL 101 (317)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEc-cccCcccccccceeeeeeEEChhhCCCHHHHHHHHHHCCCEEEEEecCceecCCch
Confidence 68999999999999999999999 88752 236899987
Q ss_pred ---------------------CcccCCCcCCCCCCChhHHHHHHHHHHHH-HhCCccEEEecCCCCcccCCCCCCCCCCC
Q 025445 40 ---------------------WEVWPGPCVFPDYTQSKVRSWWGSLVKDF-IYNGVDGIWNDMNEPAVFKSVTKTMPESN 97 (252)
Q Consensus 40 ---------------------w~~w~g~~~~~Dft~p~a~~ww~~~~~~~-~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~ 97 (252)
..+|||.+++||||||+|++||+++++++ .+.||||||+|++|+. |.+.
T Consensus 102 ~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~---------p~d~ 172 (317)
T cd06594 102 YYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYL---------PFDA 172 (317)
T ss_pred hHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCC---------CCcc
Confidence 05899999999999999999999999987 6899999999999963 4333
Q ss_pred ccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcce-eecCCCCCChh---HHHHHHH
Q 025445 98 IHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHMSIS 173 (252)
Q Consensus 98 ~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~-~W~GD~~ssW~---~L~~~I~ 173 (252)
.+.+ | ..+.++||+|++++++++++++++..+++|||+++||+|+|+|||+. +|+||+.|+|+ +|+.+|+
T Consensus 173 ~~~~-----g-~~~~~~hN~y~~~~~~~~~~~~~~~~~~~r~fvltRs~~~Gsqry~~~~WsGD~~s~W~~~~~L~~~i~ 246 (317)
T cd06594 173 VLHS-----G-EDAATMHNRYPELWAKLNREAVEEAGKTGDILFFMRSGFTGSQKYSTLFWAGDQMVSWDAHDGLKSVVP 246 (317)
T ss_pred eecC-----C-CCHHHHhhHHHHHHHHHHHHHHHHhccCCCeEEEEcccccccccccccccCCCCCCCCcCcccHHHHHH
Confidence 3321 1 24688999999999999999999888889999999999999999985 89999999998 7999999
Q ss_pred HHHHhhccCCCccccCCCCCCC----CCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHH
Q 025445 174 MVLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCS 239 (252)
Q Consensus 174 ~~l~~~l~G~~~~g~DigGf~~----~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~ 239 (252)
++|++|++|+||+|+|||||.+ .+++|||+||+|+|+|+|+||+|+......++||.+++++.++.
T Consensus 247 ~~L~~~lsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~~~~~~~~~~~~~~~~~~~ 316 (317)
T cd06594 247 GALSSGLSGYALHHSDIGGYTSLNGYVRTEELLLRWAEMAAFTPVMRTHEGNRPDDNWQFYSDDETLRHF 316 (317)
T ss_pred HHhhccccCCCcccCccCCCcCCCCCCCCHHHHHHHHHHhccccceecCCCCCCCCCcccccChHHHHhh
Confidence 9999999999999999999975 47999999999999999999999988778899999988877653
No 14
>KOG1066 consensus Glucosidase II catalytic (alpha) subunit and related enzymes, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-62 Score=457.96 Aligned_cols=237 Identities=44% Similarity=0.834 Sum_probs=222.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC--------------------------------C---------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA--------------------------------W--------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~--------------------------------w--------- 40 (252)
++|++|-++|.+.+||+|+||||+.+.++++.||||+. +
T Consensus 372 ~DV~~Vd~~FDehdiP~DviWLDIEhtdgKrYFTWDk~~FP~P~~Ml~kLa~kgRklV~IvDPHIKkD~~Y~v~ke~~~~ 451 (915)
T KOG1066|consen 372 EDVLTVDQGFDEHDIPYDVIWLDIEHTDGKRYFTWDKHKFPNPKDMLKKLASKGRKLVTIVDPHIKKDDGYFVHKEAKDK 451 (915)
T ss_pred hhhhhhhcCccccCCccceEEEeeeecCCceeEeeccccCCCHHHHHHHHHhcCCceEEEeCcccccCCCeEEhHHhhhC
Confidence 68999999999999999999999999999999999988 0
Q ss_pred --------------cccCCCcCCCCCCChhHHHHHHHHHHHHHh-CCc---cEEEecCCCCcccCCCCCCCCCCCccCCC
Q 025445 41 --------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGV---DGIWNDMNEPAVFKSVTKTMPESNIHRGD 102 (252)
Q Consensus 41 --------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~-~Gv---dg~w~D~~E~~~~~~~~~~~p~~~~~~~~ 102 (252)
.||||.+.+|||+||++|+||+++.. +-+ .|. -.+|+|||||+.|++.+.++|.+++|.|.
T Consensus 452 gy~VKd~~G~DyeG~CWPG~S~yiDf~nP~~r~wW~~~fa-fd~y~g~t~nl~iWNDMNEPSVFnGPEiTm~kDaiHyGg 530 (915)
T KOG1066|consen 452 GYYVKDRDGSDYEGWCWPGSSSYIDFINPEARKWWKSQFA-FDRYEGSTPNLFIWNDMNEPSVFNGPEITMPKDAIHYGG 530 (915)
T ss_pred CeEEEecCCCcccccccCCCcccccccCHHHHHHHhhhcc-cccccCCCCceEEeccCCCccccCCCccccchhhhhcCC
Confidence 59999999999999999999999986 222 332 26899999999999999999999999863
Q ss_pred CCCCCccccchhhhhhHHHHHHHHHHHHHhhcC-CCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhcc
Q 025445 103 DEIGGCQNHSYYHNVYGMLMARSTYEGMKLADK-DKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLS 181 (252)
Q Consensus 103 ~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~-~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~ 181 (252)
..|+++||+||+++..||++||+++.+ .+|||++|||.|+|+||++++|+|||.++|+.||-+|+++|+.|++
T Consensus 531 ------~EHRdVHNiYG~~~h~aT~dGl~~R~~g~~RPFvLsRafFaGsQR~aAiWTGDN~A~W~HLkiSiPM~Lsl~ia 604 (915)
T KOG1066|consen 531 ------WEHRDVHNIYGLMVHMATFDGLIARSGGKERPFVLSRAFFAGSQRTAAIWTGDNTADWDHLKISIPMVLSLGIA 604 (915)
T ss_pred ------eeechhhhhhceeeeehhhhhhhhhcCCCcCceEEEeccccCccceeeeeccCCccchhhheeecceeEecccc
Confidence 689999999999999999999998754 6999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHH
Q 025445 182 GQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIA 245 (252)
Q Consensus 182 G~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l 245 (252)
|+||.|.|||||+|+|++||++||+|.|+|.|+||.|+..++..||||.|++.+++++|.+|+.
T Consensus 605 G~~F~GADVgGFFgNPd~ELlvRWYQ~gaf~PFFRaHAHiDTkRREPWLf~e~~~~iiRdal~~ 668 (915)
T KOG1066|consen 605 GMPFVGADVGGFFGNPDPELLVRWYQTGAFQPFFRAHAHIDTKRREPWLFPEQTTQIIRDALRT 668 (915)
T ss_pred cceecccccccccCCCCHHHHHHHHHhcccchhhhhhccccccccCccccCcchHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999974
No 15
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.4e-59 Score=425.86 Aligned_cols=220 Identities=26% Similarity=0.478 Sum_probs=188.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEc-------------CCCCC--C-----ccceeecC-C---------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMD-------------IDYMD--G-----FRCFTFDK-A--------------------- 39 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D-------------~~~~~--~-----~~~f~~d~-~--------------------- 39 (252)
++|++++++||++|||||+|+|| ++|+. + +.+++|++ +
T Consensus 24 ~ev~~v~~~~~~~~iP~d~i~lD~W~~~~~~~~w~d~~y~~~~~~~~~~~~~~~f~~~~~FPdp~~mi~~Lh~~G~kv~l 103 (340)
T cd06597 24 AEVMRQMDAHEEHGIPVTVVVIEQWSDEATFYVFNDAQYTPKDGGAPLSYDDFSFPVEGRWPNPKGMIDELHEQGVKVLL 103 (340)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecccCcceeeeeccchhcccccCCcceecccccCccccCCCHHHHHHHHHHCCCEEEE
Confidence 68999999999999999999997 33431 2 34556653 1
Q ss_pred C----------------------------------------cccCCCcCCCCCCChhHHHHHHHHHHHHH-hCCccEEEe
Q 025445 40 W----------------------------------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWN 78 (252)
Q Consensus 40 w----------------------------------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~ 78 (252)
| .+|||.+++||||||+|++||++++++++ +.||||||+
T Consensus 104 ~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a~~Ww~~~~~~~~~~~Gidg~w~ 183 (340)
T cd06597 104 WQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEAAQWWMEKRRYLVDELGIDGFKT 183 (340)
T ss_pred EecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 1 27889999999999999999999999988 599999999
Q ss_pred cCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeec
Q 025445 79 DMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWT 158 (252)
Q Consensus 79 D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~ 158 (252)
|++|+.. +.+..+.. | ..+.++||+|++++++++++++++. ++|||+++||+++|+|||+++|+
T Consensus 184 D~~E~~~--------~~~~~~~~-----g-~~~~~~hN~y~~~~~~~~~e~~~~~--~~r~filtRs~~~Gsqry~~~Ws 247 (340)
T cd06597 184 DGGEHVW--------GRDLHFRD-----G-RRGDEMRNTYPNHYVRAYNDFLRRA--KKDGVTFSRAGYTGAQAHGIFWA 247 (340)
T ss_pred cCCCccC--------CCCceecC-----C-CcHHHhhcccHHHHHHHHHHHHHhc--cCCcEEEEecccCccCCCcceec
Confidence 9999842 22222221 1 2457899999999999999988765 68999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCCC-CChhHHHHHHhhccccccccccCCCCC-----CCCCCcccC
Q 025445 159 GDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGN-ATPRLFGRWMGIGAMFPFCRGHTESDA-----IDHEPWSFG 232 (252)
Q Consensus 159 GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~~-~~~eL~~RW~Q~~~f~P~~r~h~~~~~-----~~~ePw~~~ 232 (252)
||+.|+|++|+.+|+++|++|++|+|++|+|||||.++ +++|||+||+|+|+|+|+||+|+..+. ..+|||.|+
T Consensus 248 GD~~s~W~~L~~~i~~~L~~glsG~~~~g~DIgGF~g~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~~~~~~epw~~~ 327 (340)
T cd06597 248 GDENSTFGAFRWSVFAGLSASASGIPYWGWDLAGFTGDVPTAELYVRSTAMAAFVPIMQYHSEFNGHSSPNEDRTPWNIA 327 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhcCCCcCCCccCCcCCCCCCHHHHHHHHHHhhcchhhhhccCCCCCCcCcCCccCCccc
Confidence 99999999999999999999999999999999999987 799999999999999999999998643 589999998
Q ss_pred hhHHH
Q 025445 233 EEVLF 237 (252)
Q Consensus 233 ~~~~~ 237 (252)
+++.+
T Consensus 328 ~~~~~ 332 (340)
T cd06597 328 ERTGE 332 (340)
T ss_pred CcCCC
Confidence 87643
No 16
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=100.00 E-value=7.1e-59 Score=408.56 Aligned_cols=227 Identities=40% Similarity=0.779 Sum_probs=199.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccce--eecCCCcccCCCcCCCC-----------CCChhHHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCF--TFDKAWEVWPGPCVFPD-----------YTQSKVRSWWGSLVKDF 68 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f--~~d~~w~~w~g~~~~~D-----------ft~p~a~~ww~~~~~~~ 68 (252)
++|++++++||+++||||+|++|++|+.++++| +||++ .+|....+++ ..+|.+++||+++++++
T Consensus 24 ~~v~~~~~~~~~~~iP~d~~~lD~~~~~~~~~f~~~~d~~--~Fpdp~~~i~~l~~~g~~~~~~~~P~v~~w~~~~~~~~ 101 (265)
T cd06589 24 DKVLEVIDGMRENDIPLDGFVLDDDYTDGYGDFTFDWDAG--KFPNPKSMIDELHDNGVKLVLWIDPYIREWWAEVVKKL 101 (265)
T ss_pred HHHHHHHHHHHHcCCCccEEEECcccccCCceeeeecChh--hCCCHHHHHHHHHHCCCEEEEEeChhHHHHHHHHHHHh
Confidence 689999999999999999999999999999999 99986 5665433322 34566799999999987
Q ss_pred -HhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEecccc
Q 025445 69 -IYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGF 147 (252)
Q Consensus 69 -~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~ 147 (252)
.+.||||+|+|++||..++... ...+. . +...+.++||+|+++++|++++++++..+++|||+++||++
T Consensus 102 ~~~~Gvdg~w~D~~E~~~~~~~~-------~~~~~--~-~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~ 171 (265)
T cd06589 102 LVSLGVDGFWTDMGEPSPGDGNI-------FTGGV--V-GRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGY 171 (265)
T ss_pred hccCCCCEEeccCCCCCcCCCcc-------ccCCc--C-CCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCc
Confidence 6899999999999998654211 11100 0 12466889999999999999999998888899999999999
Q ss_pred CCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCC-CCChhHHHHHHhhccccccccccCCCCCCCC
Q 025445 148 IGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDAIDH 226 (252)
Q Consensus 148 ~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~-~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ 226 (252)
+|+|||+.+|+||+.++|+.|+.+|+.+|++|++|+|++|+|||||.+ ++++|||+||+|+|+|+|+||+|+......+
T Consensus 172 ~Gsqry~~~W~GD~~stW~~l~~~i~~~l~~~l~G~~~~g~DigGf~~~~~~~EL~~RW~Q~g~F~P~~R~H~~~~~~~~ 251 (265)
T cd06589 172 AGSQRYAGMWSGDNTSTWGYLRSQIPAGLTMSMSGIPFVGSDIGGFTGGDPSAELYVRWFQFGAFTPIMRFHSWNSPKDT 251 (265)
T ss_pred ccccCcCceeCCcccCCHHHHHHHHHHHHhhhccCCcccCCCcCCCCCCCCCHHHHHHHHHHhcCCcceecCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999 7999999999999999999999999877789
Q ss_pred CCcccChhHHHHHH
Q 025445 227 EPWSFGEEVLFCSS 240 (252)
Q Consensus 227 ePw~~~~~~~~~~r 240 (252)
|||.|++++++++|
T Consensus 252 epw~~~~~~~~~~r 265 (265)
T cd06589 252 EPWAFDEEVTAIIR 265 (265)
T ss_pred CCCCcCHHHHHhhC
Confidence 99999999998875
No 17
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=100.00 E-value=2.2e-58 Score=431.67 Aligned_cols=238 Identities=43% Similarity=0.889 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC---------------------C--------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA---------------------W-------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~---------------------w-------------------- 40 (252)
++|+++++++|+++||||++++|.+|+.++++|+||++ |
T Consensus 43 ~~v~~~i~~~~~~~iP~d~~~iD~~~~~~~~~f~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~ 122 (441)
T PF01055_consen 43 DEVREVIDRYRSNGIPLDVIWIDDDYQDGYGDFTWDPERFPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKE 122 (441)
T ss_dssp HHHHHHHHHHHHTT--EEEEEE-GGGSBTTBTT-B-TTTTTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCccceeccccccccccccccccccccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhh
Confidence 68999999999999999999999999999999999987 1
Q ss_pred ---------------cccCCCcCCCCCCChhHHHHHHHHHHHHHhC-CccEEEecCCCCcccCCCCCCCCCCCccCCCCC
Q 025445 41 ---------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYN-GVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 104 (252)
Q Consensus 41 ---------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~-Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~ 104 (252)
.+|||.+++||||||+|++||+++++++++. |+||+|+|++||..+. ...++|.+..+.+.
T Consensus 123 ~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~-~~~~~~~~~~~~~~-- 199 (441)
T PF01055_consen 123 KGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFD-SNNTLPEDAVHHDG-- 199 (441)
T ss_dssp TT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSST-TTBSBCTTEECTTE--
T ss_pred cCceeecccCCcccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCccccc-ccccCcccceecCC--
Confidence 4689899999999999999999999999986 9999999999998754 22335656555431
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCC
Q 025445 105 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQP 184 (252)
Q Consensus 105 ~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~ 184 (252)
..+.++||+|++.+++++++++++..+++|||+++||+++|+|||+++|+||+.++|++|+.+|+.+|++|+||+|
T Consensus 200 ----~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~G~qr~~~~w~GD~~s~w~~L~~~i~~~l~~~~~G~~ 275 (441)
T PF01055_consen 200 ----YSGYEMHNLYGLLYAKATYEALREIDPNKRPFIFSRSGWAGSQRYGGHWSGDNSSSWDGLRSSIPAMLNMGLSGYP 275 (441)
T ss_dssp ----CEHHHHGGGHHHHHHHHHHHHHHHHSTTSC-EEEESSEETTGGGTCEEEECSSBSSHHHHHHHHHHHHHHHCTT-S
T ss_pred ----CCchheeccccccchhhhhhhhhhccCCCCcceeecccCCCCCccceeecccccccHHHHHHHHHHHHHHhhhhcc
Confidence 3568899999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 185 FSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 185 ~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
++|+|||||.+.+++|||+||+|+|+|+|+||+|+..+...++||.|++++++++|+++++-
T Consensus 276 ~~g~DigG~~~~~~~eL~~RW~q~~~f~p~~r~h~~~~~~~~~Pw~~~~~~~~~~r~~~~lR 337 (441)
T PF01055_consen 276 FWGSDIGGFSGDPDEELYIRWYQFGAFSPLFRNHGNKPSNPREPWSFGDEAEDIFRRAIRLR 337 (441)
T ss_dssp SEEEEET-SBSTSSHHHHHHHHHHHTTSSSEEEEESTTSSB-SGGGSSCTHHHHHHHHHHHH
T ss_pred eecCcccccCCCCCHHHHHHHHHhhcCCcceeecCCcccccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997766667899999999999999999873
No 18
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=2e-57 Score=404.44 Aligned_cols=212 Identities=24% Similarity=0.453 Sum_probs=176.7
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC---------CccceeecCC-C-------------------cccCC-------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD---------GFRCFTFDKA-W-------------------EVWPG------- 45 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~---------~~~~f~~d~~-w-------------------~~w~g------- 45 (252)
++|++++++||+++||||+|++|++|+. ++++||||++ + .++|.
T Consensus 25 ~ev~~v~~~~r~~~iP~D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~~~~~~~ 104 (292)
T cd06595 25 EEYLALMDRFKKHNIPLDVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPDPEKLLQDLHDRGLKVTLNLHPADGIRAHE 104 (292)
T ss_pred HHHHHHHHHHHHhCCCccEEEEecccccccccccccCCcceeEEChhcCCCHHHHHHHHHHCCCEEEEEeCCCcccCCCc
Confidence 6899999999999999999999999975 5679999987 1 12332
Q ss_pred -----------------CcCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCC
Q 025445 46 -----------------PCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGG 107 (252)
Q Consensus 46 -----------------~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g 107 (252)
...++|||||++++||.+.+++ +.+.||||||+|++||+.+. . .+
T Consensus 105 ~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~----------~-~~------ 167 (292)
T cd06595 105 DQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTR----------T-PG------ 167 (292)
T ss_pred HHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccc----------c-CC------
Confidence 1247899999999988777654 66899999999999996531 0 00
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccCCCccc
Q 025445 108 CQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSG 187 (252)
Q Consensus 108 ~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g 187 (252)
..+...||.| .++...+ +++|||+++||+++|+|||+.+|+||+.|+|+.|+.+|+.+|++|++|+||+|
T Consensus 168 -~~~~~~~~~~-------~y~~~~~--~~~r~f~lsRs~~~G~qry~~~WsGD~~s~W~~l~~~i~~~l~~~~sG~p~~g 237 (292)
T cd06595 168 -LDPLWWLNHV-------HYLDSAR--NGRRPLIFSRWAGLGSHRYPIGFSGDTIISWASLAFQPYFTATASNIGYGYWS 237 (292)
T ss_pred -cchHHHHHHH-------HHHHhhc--cCCCcEEEEeecccCCCcCCCccCCCcccCHHHHHHHHHHHHHHHhcCCCcCC
Confidence 1112233333 3444433 67999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCC-CCChhHHHHHHhhccccccccccCCCCC-CCCCCcccChhHHHHHH
Q 025445 188 PDIGGFDG-NATPRLFGRWMGIGAMFPFCRGHTESDA-IDHEPWSFGEEVLFCSS 240 (252)
Q Consensus 188 ~DigGf~~-~~~~eL~~RW~Q~~~f~P~~r~h~~~~~-~~~ePw~~~~~~~~~~r 240 (252)
+|||||.+ .+++|||+||+|+|+|+|+||+|+.... ..+|||.|+++++++++
T Consensus 238 ~DiGGF~~~~~~~ELy~RW~Q~gaf~P~~R~H~~~~~~~~~ePW~~g~~~~~~~~ 292 (292)
T cd06595 238 HDIGGHMLGVTDPELYTRWIQFGVFSPILRLHSTKNPFNEKEPWLYEEEASKIMD 292 (292)
T ss_pred CccCCCCCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCccCcccCcHHHHhhC
Confidence 99999999 6899999999999999999999998654 58999999999988763
No 19
>PRK10426 alpha-glucosidase; Provisional
Probab=100.00 E-value=5.5e-56 Score=429.55 Aligned_cols=227 Identities=26% Similarity=0.498 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC---------ccceeecCC---------------------C-----------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG---------FRCFTFDKA---------------------W----------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~---------~~~f~~d~~---------------------w----------- 40 (252)
++|+++++++|+++||||+||+| +|+.. ..+|+||++ |
T Consensus 221 ~~v~~v~~~~r~~~IP~d~i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~ 299 (635)
T PRK10426 221 EVVQKKLDTMRNAGVKVNGIWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQLDSRIKQLNEEGIQFLGYINPYLASDGDL 299 (635)
T ss_pred HHHHHHHHHHHHcCCCeeEEEEe-cccccccccccccccccceEChhhCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHH
Confidence 57999999999999999999999 78742 126799987 0
Q ss_pred ---------------------cccCCCcCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCCcccCCCCCCCCCCCc
Q 025445 41 ---------------------EVWPGPCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNI 98 (252)
Q Consensus 41 ---------------------~~w~g~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~ 98 (252)
.+||+.+++||||||+|++||++++++ +.+.||||||+|+||+ +|.+..
T Consensus 300 y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~---------~p~d~~ 370 (635)
T PRK10426 300 CEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEY---------LPTDAY 370 (635)
T ss_pred HHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCC---------CCCcce
Confidence 478899999999999999999999865 6789999999999995 354544
Q ss_pred cCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcce-eecCCCCCChh---HHHHHHHH
Q 025445 99 HRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA-TWTGDNVSNWE---HLHMSISM 174 (252)
Q Consensus 99 ~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~-~W~GD~~ssW~---~L~~~I~~ 174 (252)
+.. | ..+.++||+|+++++++++|++++..+.+|||+++||+++|+|||+. +|+||+.++|+ +|+.+|++
T Consensus 371 ~~~-----g-~~~~~~hN~Y~~l~~~~~~e~~~~~~~~~r~f~ltRsg~aGsQry~~~~WsGD~~ssW~~~d~L~~~I~~ 444 (635)
T PRK10426 371 LHN-----G-VSAEIMHNAWPALWAKCNYEALEETGKLGEILFFMRAGYTGSQKYSTLFWAGDQNVDWSLDDGLASVVPA 444 (635)
T ss_pred eeC-----C-CCHHHhccHHHHHHHHHHHHHHHHhcCCCCcEEEEccccCCcCCccccccCCCCCCcCcChhHHHHHHHH
Confidence 432 1 34577999999999999999999887778999999999999999986 89999999995 89999999
Q ss_pred HHHhhccCCCccccCCCCCCC----CCChhHHHHHHhhccccccccccCCCCCCCCCCcccCh--hHHHHHHHHHHHH
Q 025445 175 VLQLGLSGQPFSGPDIGGFDG----NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGE--EVLFCSSIVIIAF 246 (252)
Q Consensus 175 ~l~~~l~G~~~~g~DigGf~~----~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~--~~~~~~r~~~~l~ 246 (252)
+|++|+||+|++|+|||||.+ .+++|||+||+|+|+|+|+||+|+.. .++|||.|+. ++.+.+++++++.
T Consensus 445 ~Ls~glsG~~~~g~DIGGF~~~~~~~~~~EL~~RW~Q~gaF~P~~R~H~~~--~~~epw~f~~~~~~~~~~~~~~~lR 520 (635)
T PRK10426 445 ALSLGMSGHGLHHSDIGGYTTLFGMKRTKELLLRWCEFSAFTPVMRTHEGN--RPGDNWQFDSDAETIAHFARMTRVF 520 (635)
T ss_pred HHHHHhcCcCccccccCCCcCcCCCCCCHHHHHHHHHHhcCCceeecCCCC--CCCCCCCCCCcHHHHHHHHHHHHHH
Confidence 999999999999999999974 47999999999999999999999854 5899999953 5556666666653
No 20
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=1.5e-54 Score=387.82 Aligned_cols=208 Identities=25% Similarity=0.437 Sum_probs=185.0
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC---------------------C--------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA---------------------W-------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~---------------------w-------------------- 40 (252)
++|++++++++++|||||+|++|++|+..+++|+||++ |
T Consensus 30 ~~v~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f~~d~~~FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~ 109 (303)
T cd06592 30 ETVLNYAQEIIDNGFPNGQIEIDDNWETCYGDFDFDPTKFPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGY 109 (303)
T ss_pred HHHHHHHHHHHHcCCCCCeEEeCCCccccCCccccChhhCCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCe
Confidence 68999999999999999999999999999999999987 1
Q ss_pred -------------cccCCCcCCCCCCChhHHHHHHHHHHHHH-hCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCC
Q 025445 41 -------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIG 106 (252)
Q Consensus 41 -------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~ 106 (252)
.+|+|.++++|||||+|++||++++++++ +.||||||+|++||+. +|....+.
T Consensus 110 ~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~-------~p~~~~~~------ 176 (303)
T cd06592 110 LVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASY-------LPQDYVTE------ 176 (303)
T ss_pred EEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCccc-------CCcccccC------
Confidence 37889999999999999999999999988 8999999999999973 44443332
Q ss_pred CccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHH---HHHHHHHHHhhccCC
Q 025445 107 GCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHL---HMSISMVLQLGLSGQ 183 (252)
Q Consensus 107 g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L---~~~I~~~l~~~l~G~ 183 (252)
.+...||.|..+++++.++. ++++++||+|+|+|+++.+|+||+.|+|++| +.+|+++|++|+||+
T Consensus 177 ---~~~~~~n~y~~~~~~~~~~~--------~~~~~~Rsg~~g~~~~~~~w~GD~~s~W~~~~gl~~~i~~~L~~~lsG~ 245 (303)
T cd06592 177 ---DPLLNPDEYTRLYAEMVAEF--------GDLIEVRAGWRSQGLPLFVRMMDKDSSWGGDNGLKSLIPTALTMGLLGY 245 (303)
T ss_pred ---CcccCHHHHHHHHHHHHHhh--------ccceEEEeeeecCCCCeeEEcCCCCCCCCCCcCHHHHHHHHHHhhccCC
Confidence 12457999998888887542 3899999999999888899999999999976 999999999999999
Q ss_pred CccccC-CCCCCC-------CCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHH
Q 025445 184 PFSGPD-IGGFDG-------NATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSS 240 (252)
Q Consensus 184 ~~~g~D-igGf~~-------~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r 240 (252)
|||++| ||||.+ .+++|||+||+|+|+|+|+||+| ++||.|++++++++|
T Consensus 246 ~~w~~D~iGGf~~~~~~~~~~~~~EL~~RW~q~g~f~P~~R~h-------~~PW~~~~e~~~~~~ 303 (303)
T cd06592 246 PFVLPDMIGGNAYGGNSDDELPDKELYIRWLQLSAFLPVMQFS-------IAPWQYDDEVVEIAK 303 (303)
T ss_pred cccCCCccCCccccccccCCCCCHHHHHHHHHHHHhChhhhcc-------cCCccCCHHHHHhhC
Confidence 999999 799864 36899999999999999999999 589999999999875
No 21
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.1e-51 Score=393.03 Aligned_cols=232 Identities=42% Similarity=0.803 Sum_probs=209.1
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCCC-----------------------------------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKAW----------------------------------------- 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~w----------------------------------------- 40 (252)
++++++++++|++|||+|++|+|+|||++++|||.|+.|
T Consensus 311 s~~~dvv~~~~~agiPld~~~~DiDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~ 390 (805)
T KOG1065|consen 311 SVVRDVVENYRAAGIPLDVIVIDIDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAK 390 (805)
T ss_pred HHHHHHHHHHHHcCCCcceeeeehhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhh
Confidence 578999999999999999999999999999999999981
Q ss_pred ---------------cccCCCcCCCCCCChhHHHHHHHHHHHHHh-CCccEEEecCCCCcccCCCCCCCCCCC-ccCCCC
Q 025445 41 ---------------EVWPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNEPAVFKSVTKTMPESN-IHRGDD 103 (252)
Q Consensus 41 ---------------~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~E~~~~~~~~~~~p~~~-~~~~~~ 103 (252)
++|||..+|+|||||++..||.++++.+.+ +++||+|+||||+..|+.. |-+. ...+.
T Consensus 391 ~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~~~~~~fh~~vp~dg~wiDmnE~snf~~p----p~~~~~~~~~- 465 (805)
T KOG1065|consen 391 DVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWLDELKRFHDEVPFDGFWIDMNEPSNFPSP----PINPTLDNGD- 465 (805)
T ss_pred ceeeecccCchhhhcccCCCcccccccCCchHHHHHHHHHHhhcccCCccceEEECCCcccCCCC----Cccccccccc-
Confidence 689999999999999999999999999885 9999999999999988641 1111 11111
Q ss_pred CCCCcccc-chhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcceeecCCCCCChhHHHHHHHHHHHhhccC
Q 025445 104 EIGGCQNH-SYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAATWTGDNVSNWEHLHMSISMVLQLGLSG 182 (252)
Q Consensus 104 ~~~g~~~~-~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~~W~GD~~ssW~~L~~~I~~~l~~~l~G 182 (252)
.... ++.||+|++..+.|++.++.++. ++|+++++||+|+|++||++||.||+.++|+.|+.+|+.||+++++|
T Consensus 466 ----~~~~tyd~~~lyg~~~aiat~~a~~~v~-~kr~~i~srsTf~g~g~y~~hwlgdn~~~w~~L~~sI~gml~fnl~G 540 (805)
T KOG1065|consen 466 ----LYAKTYDTHNLYGYSEAIATHQALVDVP-GKRSFILSRSTFVGSGRYAGHWLGDNTARWEDLQTSISGMLEFNLFG 540 (805)
T ss_pred ----ccccchhhhhhHhHHHhhhhhccceecc-ccccccccccceecccccceeecccccceehhccccchhhhcccccC
Confidence 1122 67899999999999999999886 89999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHH
Q 025445 183 QPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVII 244 (252)
Q Consensus 183 ~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~ 244 (252)
+|++|+|||||.+.+++|||.||+|+|+|+|++|+|+..+..++||..++. +.+.+|+++-
T Consensus 541 ip~Vg~Dicgf~~~~~eELc~RW~q~gaF~Pf~R~hn~~~~~~qe~~~~~s-v~~a~r~~~~ 601 (805)
T KOG1065|consen 541 IPMVGSDICGFLGPPTEELCLRWLQLGAFYPFSRNHNSPGEPRQEPYTWSS-VAEAARNALT 601 (805)
T ss_pred CCccchhhhcCCCCCCHHHHHHHHHhccCCchhhccCCCCCcccChhhHHH-HHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999965 7888887764
No 22
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=100.00 E-value=6.5e-44 Score=306.57 Aligned_cols=202 Identities=25% Similarity=0.455 Sum_probs=162.4
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCCCcccCCCcCCCCCCChhHHHHHHHHHHHHHhCCcc-EEEecC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKAWEVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVD-GIWNDM 80 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~w~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvd-g~w~D~ 80 (252)
..+++++++|+++++|+.-|.-+.+|..++.+ .++....+.+.||. |+|...
T Consensus 45 ~~a~~~~~~y~~~~~plgw~lpndgyg~~y~~---------------------------l~~~~~~~~~~g~~~glwt~~ 97 (261)
T cd06596 45 DDARKVADKYKENDMPLGWMLPNDGYGCGYEN---------------------------LKEVVDYLHANGVETGLWTQS 97 (261)
T ss_pred hhHHHHHHHHHhcCCCceeeccCCCCcchHHH---------------------------HHHHHHHHHHcCCcccccccc
Confidence 46889999999999999999988777776632 22223333456766 777654
Q ss_pred CCCcccCCCCCCCCCCCccCCCCCCCCccccchh-----hhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCcce
Q 025445 81 NEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYY-----HNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRYAA 155 (252)
Q Consensus 81 ~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~-----hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~~~ 155 (252)
+= .. +...+...|. +..+.++ +-.|++.++|++++++++. +++|||+++||+|+|+|||++
T Consensus 98 ~l----~~----~~~ev~~~g~-----~~~k~Dv~w~g~gy~~~l~~~ka~yeg~~~~-~~~RpfiltRsg~aGsQRy~~ 163 (261)
T cd06596 98 GL----RD----IAKEVGAAGV-----RARKTDVAWVGAGYSFALNGVKAAADGIESN-SNARPFIVTVDGWAGTQRYAG 163 (261)
T ss_pred ch----hh----hhhhhccCCc-----eEEeccchhhccchhHHHHHHHHHHHHHHhC-CCCCCEEEEecCccccCCCCC
Confidence 41 00 0000111110 1112222 3357788999999999876 789999999999999999999
Q ss_pred eecCCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhH
Q 025445 156 TWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEV 235 (252)
Q Consensus 156 ~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~ 235 (252)
+|+||+.++|+.|+.+|+.+|++||||+||+|+|||||+++ ++|||+||+|+++|+|+||+|+..+..++|||.|++++
T Consensus 164 ~WsGD~~stWe~Lr~sI~~~L~~gLsG~p~~G~DIGGF~g~-~~EL~vRW~Q~gaF~P~~R~h~~~~~~~rEPW~fge~~ 242 (261)
T cd06596 164 IWTGDQSGSWEYIRFHIPTYIGSGLSGQPNTTSDVDGIFGG-SPETYTRDLQWKAFTPVLMTMSGWAANDKQPWVFGEPY 242 (261)
T ss_pred ccCCCCcCcHHHHHHHHHHHHHHHhcCCCcCccccCcCCCC-CHHHHHHHHHHHHhhhhhhhccCCCCCCCCCeeCCHHH
Confidence 99999999999999999999999999999999999999988 99999999999999999999998777899999999999
Q ss_pred HHHHHHHHHH
Q 025445 236 LFCSSIVIIA 245 (252)
Q Consensus 236 ~~~~r~~~~l 245 (252)
++++|++|+|
T Consensus 243 ~~i~R~~l~L 252 (261)
T cd06596 243 TSINRDYLKL 252 (261)
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 23
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=98.28 E-value=1.2e-05 Score=74.52 Aligned_cols=208 Identities=19% Similarity=0.180 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC-------ccceeecCC----------------------C------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG-------FRCFTFDKA----------------------W------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~-------~~~f~~d~~----------------------w------------ 40 (252)
+.|+++++...+.|+ +.++||.+|+.. .++++.|++ |
T Consensus 58 ~~i~~~a~~~~~~G~--e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l 135 (394)
T PF02065_consen 58 EKILELADAAAELGY--EYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDL 135 (394)
T ss_dssp HHHHHHHHHHHHHT---SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCH
T ss_pred HHHHHHHHHHHHhCC--EEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHH
Confidence 578899999988775 799999999852 467888876 2
Q ss_pred ----ccc----CC-------CcCCCCCCChhHHHHHHHHHHHHH-hCCccEEEecCCCCcccCCCCCCCCCCCccCCCCC
Q 025445 41 ----EVW----PG-------PCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 104 (252)
Q Consensus 41 ----~~w----~g-------~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~ 104 (252)
.-| ++ ...++|+++|++++|..+.+.+++ +.|||++|.|+|....- .+...
T Consensus 136 ~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~-------------~~~~~ 202 (394)
T PF02065_consen 136 YREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITE-------------AGSPS 202 (394)
T ss_dssp CCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS--------------SSTT
T ss_pred HHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCC-------------CCCCC
Confidence 011 11 234799999999999999998876 69999999999975310 00000
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCC------cceeecCCCCCChhHHHHHHHHHHHh
Q 025445 105 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQR------YAATWTGDNVSNWEHLHMSISMVLQL 178 (252)
Q Consensus 105 ~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r------~~~~W~GD~~ssW~~L~~~I~~~l~~ 178 (252)
. ...+|...--+ ....+.+++..| .-++.+-|+.-|-.- ....|+.|+....+-++.+. ..++
T Consensus 203 ~-----~~~~~~~~~~~--y~l~~~L~~~~P--~v~iE~CssGG~R~D~g~l~~~~~~w~SD~tda~~R~~iq~--g~s~ 271 (394)
T PF02065_consen 203 L-----PEGYHRYVLGL--YRLLDRLRARFP--DVLIENCSSGGGRFDPGMLYYTPQSWTSDNTDALERLRIQY--GTSL 271 (394)
T ss_dssp S------GHHHHHHHHH--HHHHHHHHHHTT--TSEEEE-BTTBTTTSHHHHCCSSEEESBST-SHHHHHHHHH--HHCT
T ss_pred c-----hHHHHHHHHHH--HHHHHHHHHhCC--CcEEEeccCCCCccccchheeccccccCCccchHHHhhhhc--cccc
Confidence 0 01122111000 123445555443 334444443322221 23589999997766444443 2222
Q ss_pred hccCCCccc-----cCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHHh
Q 025445 179 GLSGQPFSG-----PDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFF 247 (252)
Q Consensus 179 ~l~G~~~~g-----~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~~ 247 (252)
.+|-.. +++-.........|-.|=. .+.| -.+-. ...+-..+++-.+.+++.+.+|.
T Consensus 272 ---~~p~~~~~~hv~~~p~~~~~r~~~l~~r~~-~a~~-g~~g~-------e~dl~~ls~~e~~~~~~~ia~YK 333 (394)
T PF02065_consen 272 ---FYPPEYMGAHVSASPNHQTGRTTPLEFRAH-VAMF-GRLGL-------ELDLTKLSEEELAAVKEQIAFYK 333 (394)
T ss_dssp ---TSSGGGEEEEEEHSS-TTTHHHGGHHHHHH-HHTC-SEEEE-------ESTGCGS-HHHHHHHHHHHHHHH
T ss_pred ---ccCHHHhCCeEEeccccccCCcccceechh-hhhc-CCcee-------ccCcccCCHHHHHHHHHHHHHHH
Confidence 122111 1110000001224444432 2333 33333 34556677888889999998886
No 24
>PLN02808 alpha-galactosidase
Probab=96.61 E-value=0.097 Score=48.60 Aligned_cols=180 Identities=16% Similarity=0.159 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHcCCC---ccEEEEcCCCCCC----ccceeecCCCcccCC---------------CcCCCC-------C
Q 025445 2 ILIREFVRTFREKGIP---CDVIWMDIDYMDG----FRCFTFDKAWEVWPG---------------PCVFPD-------Y 52 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP---~d~i~~D~~~~~~----~~~f~~d~~w~~w~g---------------~~~~~D-------f 52 (252)
+.|++.++.|.+.|+. .+-|++|..|+.. +++...|++ .||. .+.+.| -
T Consensus 49 ~~i~~~a~~mv~~Gl~~~Gy~yv~iDd~W~~~~rd~~G~~~~d~~--rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~ 126 (386)
T PLN02808 49 TLIKQTADAMVSSGLAALGYKYINLDDCWAELKRDSQGNLVPKAS--TFPSGIKALADYVHSKGLKLGIYSDAGTLTCSK 126 (386)
T ss_pred HHHHHHHHHHHHcchHHhCCEEEEEcCCcCCCCcCCCCCEeeChh--hcCccHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 5788999999887765 8999999999864 456777775 3332 012222 2
Q ss_pred CChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHh
Q 025445 53 TQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKL 132 (252)
Q Consensus 53 t~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~ 132 (252)
..|.+..+..+-.+.+.+-|||.+|.|.+-... ...+..|. ++.++|.+
T Consensus 127 ~~pGs~~~e~~DA~~fA~WGvDylK~D~C~~~~--------------------------~~~~~~y~-----~m~~AL~~ 175 (386)
T PLN02808 127 TMPGSLGHEEQDAKTFASWGIDYLKYDNCENTG--------------------------TSPQERYP-----KMSKALLN 175 (386)
T ss_pred CCCcchHHHHHHHHHHHHhCCCEEeecCcCCCC--------------------------ccHHHHHH-----HHHHHHHH
Confidence 457788888777777778999999999763210 00123343 34445544
Q ss_pred hcCCCCcEEEeccccCCCC------Cccee--ecCCCCCChhHHHHHHHHHHHh-hccCCCcc-ccCC--CCCCCCCChh
Q 025445 133 ADKDKRPFVLTRAGFIGSQ------RYAAT--WTGDNVSNWEHLHMSISMVLQL-GLSGQPFS-GPDI--GGFDGNATPR 200 (252)
Q Consensus 133 ~~~~~r~~~~sRs~~~g~~------r~~~~--W~GD~~ssW~~L~~~I~~~l~~-~l~G~~~~-g~Di--gGf~~~~~~e 200 (252)
..||+++|=+.|.... .++.. -++|+..+|+++...+...... ..+|-..| =+|+ .|..|-..+|
T Consensus 176 ---tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~~~agPG~wnDpDML~vGn~glt~~E 252 (386)
T PLN02808 176 ---SGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWASYARPGGWNDPDMLEVGNGGMTTEE 252 (386)
T ss_pred ---hCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhHhhcCCCCCCCCCeeeECCCCCCHHH
Confidence 3699999866543111 11222 3589999999888877654432 33443333 1232 2322223444
Q ss_pred HHHHHHhhccc-cccccc
Q 025445 201 LFGRWMGIGAM-FPFCRG 217 (252)
Q Consensus 201 L~~RW~Q~~~f-~P~~r~ 217 (252)
--+----++++ +|++-.
T Consensus 253 ~rthfsLWam~~SPLiiG 270 (386)
T PLN02808 253 YRSHFSIWALAKAPLLIG 270 (386)
T ss_pred HHHHHHHHHHHhCcceec
Confidence 44433333444 587743
No 25
>PLN02692 alpha-galactosidase
Probab=96.51 E-value=0.19 Score=47.00 Aligned_cols=139 Identities=15% Similarity=0.181 Sum_probs=88.4
Q ss_pred hHHHHHHHHHHHcCCC---ccEEEEcCCCCCC----ccceeecCCCcccCC---------------CcCCCC-------C
Q 025445 2 ILIREFVRTFREKGIP---CDVIWMDIDYMDG----FRCFTFDKAWEVWPG---------------PCVFPD-------Y 52 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP---~d~i~~D~~~~~~----~~~f~~d~~w~~w~g---------------~~~~~D-------f 52 (252)
+.|++.++.+.+.|+. .+-|.+|..|+.. .+.+..|++ .||. .+.+.| .
T Consensus 73 ~~i~~~ad~~~~~gl~~~Gy~yv~iDDgW~~~~rd~~G~~~~d~~--kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~ 150 (412)
T PLN02692 73 KMIKETADALVSTGLSKLGYTYVNIDDCWAEIARDEKGNLVPKKS--TFPSGIKALADYVHSKGLKLGIYSDAGYFTCSK 150 (412)
T ss_pred HHHHHHHHHHHhccchhcCcEEEEEcCCcCCCCCCCCCCeeeChh--hcCCcHHHHHHHHHHCCCceEEEecCCccccCC
Confidence 5688889988887764 8899999999853 456777775 3332 011222 2
Q ss_pred CChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHh
Q 025445 53 TQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKL 132 (252)
Q Consensus 53 t~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~ 132 (252)
+.|.+..+..+-.+.+.+-|||.+|.|.+-... . .....|. ++.+++++
T Consensus 151 ~~pGS~g~e~~DA~~fA~WGvDylK~D~C~~~~----------------~----------~~~~~y~-----~m~~AL~~ 199 (412)
T PLN02692 151 TMPGSLGHEEQDAKTFASWGIDYLKYDNCNNDG----------------S----------KPTVRYP-----VMTRALMK 199 (412)
T ss_pred CCCCchHHHHHHHHHHHhcCCCEEeccccCCCC----------------c----------chhHHHH-----HHHHHHHH
Confidence 457778888877777778999999999763210 0 0012332 34455544
Q ss_pred hcCCCCcEEEeccccCCCC------Ccceee--cCCCCCChhHHHHHHHHHH
Q 025445 133 ADKDKRPFVLTRAGFIGSQ------RYAATW--TGDNVSNWEHLHMSISMVL 176 (252)
Q Consensus 133 ~~~~~r~~~~sRs~~~g~~------r~~~~W--~GD~~ssW~~L~~~I~~~l 176 (252)
..||+++|=+.|.-.. .++..| +||+..+|+.+...+....
T Consensus 200 ---tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~ 248 (412)
T PLN02692 200 ---AGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNE 248 (412)
T ss_pred ---hCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHH
Confidence 3699999865543222 223333 5999999998888775443
No 26
>PLN02229 alpha-galactosidase
Probab=95.69 E-value=0.44 Score=44.78 Aligned_cols=179 Identities=15% Similarity=0.119 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHcCCC---ccEEEEcCCCCCC----ccceeecCCCcccCC---------------CcCCCCCC------
Q 025445 2 ILIREFVRTFREKGIP---CDVIWMDIDYMDG----FRCFTFDKAWEVWPG---------------PCVFPDYT------ 53 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP---~d~i~~D~~~~~~----~~~f~~d~~w~~w~g---------------~~~~~Dft------ 53 (252)
+.|++.++.+.+.|+. .+-|.+|..|+.. .+.+..|++ .||. .+.+.|--
T Consensus 80 ~~i~~~ad~~v~~Gl~~~Gy~yv~iDDgW~~~~rd~~G~l~~d~~--rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~ 157 (427)
T PLN02229 80 TVIKETADALVSTGLADLGYIHVNIDDCWSNLKRDSKGQLVPDPK--TFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQV 157 (427)
T ss_pred HHHHHHHHHHHHhHHHhCCCEEEEEcCCcCCCCcCCCCCEEEChh--hcCCcHHHHHHHHHHCCCceEEeccCCCcccCC
Confidence 5688889988776655 7889999999854 456777775 3432 01112211
Q ss_pred ChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhh
Q 025445 54 QSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLA 133 (252)
Q Consensus 54 ~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~ 133 (252)
.|.......+-.+.+-+-|||.+|.|.+-... ......|+ ++.+++++
T Consensus 158 ~pGS~g~e~~DA~~fA~WGVDylK~D~C~~~~--------------------------~~~~~~y~-----~m~~AL~~- 205 (427)
T PLN02229 158 RPGSLFHEVDDADIFASWGVDYLKYDNCYNLG--------------------------IKPIERYP-----PMRDALNA- 205 (427)
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEecCCCCCC--------------------------cchhHHHH-----HHHHHHHh-
Confidence 22222223322334446888888888753200 00112333 33455543
Q ss_pred cCCCCcEEEeccccCCC------CCcceee--cCCCCCChhHHHHHHHHHHHh-hccCCCcc-ccCC--CCCCCCCChhH
Q 025445 134 DKDKRPFVLTRAGFIGS------QRYAATW--TGDNVSNWEHLHMSISMVLQL-GLSGQPFS-GPDI--GGFDGNATPRL 201 (252)
Q Consensus 134 ~~~~r~~~~sRs~~~g~------~r~~~~W--~GD~~ssW~~L~~~I~~~l~~-~l~G~~~~-g~Di--gGf~~~~~~eL 201 (252)
..||+++|=+.|.-. ..++..| +||+..+|+++...+...-.. ..+|-..| =+|+ .|..|-..+|-
T Consensus 206 --tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~~~agPG~wnDpDML~vGn~glT~~E~ 283 (427)
T PLN02229 206 --TGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNNKWAAYAGPGGWNDPDMLEVGNGGMTYEEY 283 (427)
T ss_pred --hCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHHHHHHHHHHHHhhcCCCCCCCCCeeeeCCCCCCHHHH
Confidence 379999986554322 1233444 599999999988877544333 33333333 2343 23323334555
Q ss_pred HHHHHhhccc-ccccc
Q 025445 202 FGRWMGIGAM-FPFCR 216 (252)
Q Consensus 202 ~~RW~Q~~~f-~P~~r 216 (252)
.+----++.+ +|++-
T Consensus 284 rthfsLWai~~SPLii 299 (427)
T PLN02229 284 RGHFSIWALMKAPLLI 299 (427)
T ss_pred HHHHHHHHHHhCceee
Confidence 4443444444 58774
No 27
>PLN03231 putative alpha-galactosidase; Provisional
Probab=93.94 E-value=0.6 Score=42.97 Aligned_cols=93 Identities=17% Similarity=0.209 Sum_probs=61.5
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHH
Q 025445 49 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYE 128 (252)
Q Consensus 49 ~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~ 128 (252)
-+|..++.|.+|+.+..+.+.+-|||.+|.|.+.+.. .. + ...| +++.+
T Consensus 153 ~v~~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~-----------~~------------~---~~~y-----~~m~~ 201 (357)
T PLN03231 153 GVNTSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAE-----------NP------------Q---LDEI-----LTVSK 201 (357)
T ss_pred cccccchhHHHHHHHHHHHHHHhCCCEEeecccCCCC-----------cc------------c---HHHH-----HHHHH
Confidence 4678899999999999888889999999999653210 00 0 1123 24455
Q ss_pred HHHhhcCCCCcEEEeccccCCC--------CCcceee--cCCCCCChhHHHHHHHHH
Q 025445 129 GMKLADKDKRPFVLTRAGFIGS--------QRYAATW--TGDNVSNWEHLHMSISMV 175 (252)
Q Consensus 129 ~~~~~~~~~r~~~~sRs~~~g~--------~r~~~~W--~GD~~ssW~~L~~~I~~~ 175 (252)
+|++ ..||+++|=+-.... +.++..| +||+..+|+.+...+...
T Consensus 202 AL~~---tGRpIv~Slc~g~~~~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~ 255 (357)
T PLN03231 202 AIRN---SGRPMIYSLSPGDGATPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVA 255 (357)
T ss_pred HHHH---hCCCeEEEecCCCCCCchhhhhhhhhcCcccccCCcccchhhHHHHHHHH
Confidence 5554 379999987631111 1223333 699999999988777654
No 28
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=92.85 E-value=0.4 Score=47.83 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+.|++.++.+.+.|+|+..+.||.+||.
T Consensus 216 ~~I~~~l~~l~e~gip~~~viIDDGwQs 243 (775)
T PLN02219 216 EGVDEGLKSLSEGGTPPKFLIIDDGWQQ 243 (775)
T ss_pred HHHHHHHHHHHhCCCCceEEEEccCccc
Confidence 5689999999999999999999999995
No 29
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=92.31 E-value=0.68 Score=46.25 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
|-|++-++.+.+.|||..-+.||.+||.
T Consensus 230 egI~~gl~~L~~~Gip~~~vIIDDGWQs 257 (777)
T PLN02711 230 QGVWEGVKGLVDGGCPPGLVLIDDGWQS 257 (777)
T ss_pred HHHHHHHHHHHhCCCCccEEEEcCCccc
Confidence 5688999999999999999999999996
No 30
>PLN02899 alpha-galactosidase
Probab=90.52 E-value=3.2 Score=40.79 Aligned_cols=89 Identities=18% Similarity=0.195 Sum_probs=59.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHH
Q 025445 50 PDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEG 129 (252)
Q Consensus 50 ~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~ 129 (252)
+|.+.+.+++++.+..+.+.+-|||.+|.|..-+.. .. ..-| +++.++
T Consensus 186 vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~------------~~---------------~~ey-----~~ms~A 233 (633)
T PLN02899 186 VNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD------------FD---------------LEEI-----TYVSEV 233 (633)
T ss_pred ccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC------------CC---------------hHHH-----HHHHHH
Confidence 566778889999988888888999999999642210 00 0112 345666
Q ss_pred HHhhcCCCCcEEEeccccCCCC----------Cccee--ecCCCCCChhHHHHHHHHH
Q 025445 130 MKLADKDKRPFVLTRAGFIGSQ----------RYAAT--WTGDNVSNWEHLHMSISMV 175 (252)
Q Consensus 130 ~~~~~~~~r~~~~sRs~~~g~~----------r~~~~--W~GD~~ssW~~L~~~I~~~ 175 (252)
|.+ ..||+++|=+- |.+ .++.. -+||+..+|+.+...+...
T Consensus 234 L~a---TGRPIvySLsp--G~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~ 286 (633)
T PLN02899 234 LKE---LDRPIVYSLSP--GTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVS 286 (633)
T ss_pred HHH---hCCCeEEEecC--CcccchhhhhhhhccCccceecCCcccchHHHHHHHHHH
Confidence 654 37999998763 322 22333 3599999999988766543
No 31
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=90.03 E-value=1.3 Score=44.31 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+.|++-++.+++.|||...+.||.+||.
T Consensus 212 ~~i~~~l~~L~~~gi~~~~viIDDGWQ~ 239 (747)
T PF05691_consen 212 EGILEGLKSLEEGGIPPRFVIIDDGWQS 239 (747)
T ss_pred HHHHHHHHHHHhCCCCceEEEEecchhc
Confidence 5688999999999999999999999985
No 32
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=89.15 E-value=1.8 Score=43.19 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+-|++.++.+.+.|+|+.-+.||.+||.
T Consensus 219 ~~I~~~l~~l~~~g~p~~~vIIDDGwQs 246 (750)
T PLN02684 219 EGVEAGLKSLAAGGTPPKFVIIDDGWQS 246 (750)
T ss_pred HHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 5689999999999999999999999995
No 33
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=88.81 E-value=1.9 Score=43.21 Aligned_cols=28 Identities=7% Similarity=0.205 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+.|++-++.+.+.++|+.-+.||.+||.
T Consensus 220 ~~I~~~l~~l~~~g~p~~~viIDDGwQs 247 (758)
T PLN02355 220 EGVKQGLESLEKGGVTPKFVIIDDGWQS 247 (758)
T ss_pred HHHHHHHHHHHhCCCCccEEEEeccccc
Confidence 5689999999999999999999999996
No 34
>PLN02361 alpha-amylase
Probab=88.19 E-value=2.1 Score=40.06 Aligned_cols=83 Identities=13% Similarity=0.087 Sum_probs=52.0
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcC-C-------CCCCcc--ceeecCC--Cc---------ccCCCcCC--CCCCCh
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDI-D-------YMDGFR--CFTFDKA--WE---------VWPGPCVF--PDYTQS 55 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~-~-------~~~~~~--~f~~d~~--w~---------~w~g~~~~--~Dft~p 55 (252)
++|+++++++.+++||- +|++.... . +.+.+. .+.||+. .. .+-+...+ +|.+||
T Consensus 75 ~~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np 154 (401)
T PLN02361 75 EHLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQH 154 (401)
T ss_pred HHHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCH
Confidence 37899999999999985 46776553 1 111111 1233321 00 00011234 456789
Q ss_pred hHHHHHHHHHHHHHh-CCccEEEecCCCC
Q 025445 56 KVRSWWGSLVKDFIY-NGVDGIWNDMNEP 83 (252)
Q Consensus 56 ~a~~ww~~~~~~~~~-~Gvdg~w~D~~E~ 83 (252)
++++..++-++-+.+ .|||||=+|....
T Consensus 155 ~Vr~~l~~~~~wl~~~~GiDGfRlDavk~ 183 (401)
T PLN02361 155 FVRKDIIGWLIWLRNDVGFQDFRFDFAKG 183 (401)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 999999988877765 8999999997643
No 35
>PRK03705 glycogen debranching enzyme; Provisional
Probab=87.99 E-value=2.2 Score=42.59 Aligned_cols=80 Identities=20% Similarity=0.326 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCCCC-c----------ccee-ecCC--CcccCCCcCCCCCCChhHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYMDG-F----------RCFT-FDKA--WEVWPGPCVFPDYTQSKVRSWWGSLV 65 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~~~-~----------~~f~-~d~~--w~~w~g~~~~~Dft~p~a~~ww~~~~ 65 (252)
+|++++|++.+++||- +|++......... . ..|. .+.+ ...|.|-+.-+++.||.++++..+.+
T Consensus 242 ~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l 321 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCL 321 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHH
Confidence 6899999999999985 4666654432110 0 1111 1111 12344444567888999999999999
Q ss_pred HHHHh-CCccEEEecCC
Q 025445 66 KDFIY-NGVDGIWNDMN 81 (252)
Q Consensus 66 ~~~~~-~Gvdg~w~D~~ 81 (252)
+..++ .|||||=+|..
T Consensus 322 ~~W~~e~gVDGFRfD~a 338 (658)
T PRK03705 322 RYWVETCHVDGFRFDLA 338 (658)
T ss_pred HHHHHHhCCCEEEEEcH
Confidence 99885 89999999964
No 36
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=87.61 E-value=1.8 Score=46.14 Aligned_cols=82 Identities=16% Similarity=0.327 Sum_probs=57.3
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCCCCCc------------cceeecC----CCcccCCCcCCCCCCChhHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDYMDGF------------RCFTFDK----AWEVWPGPCVFPDYTQSKVRSWWG 62 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~~~~~------------~~f~~d~----~w~~w~g~~~~~Dft~p~a~~ww~ 62 (252)
++|++++|++.+++||- +|++.......+.. .-|..+. .+..|.|-+..+|+.||.++++..
T Consensus 246 ~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 246 EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 37899999999999985 35555443221111 0122221 123455666789999999999999
Q ss_pred HHHHHHHhCCccEEEecCCC
Q 025445 63 SLVKDFIYNGVDGIWNDMNE 82 (252)
Q Consensus 63 ~~~~~~~~~Gvdg~w~D~~E 82 (252)
+.++..++.|||||=+|...
T Consensus 326 d~lr~Wv~~gVDGfRfDla~ 345 (1221)
T PRK14510 326 DVLRSWAKRGVDGFRLDLAD 345 (1221)
T ss_pred HHHHHHHHhCCCEEEEechh
Confidence 99999888999999999543
No 37
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=87.19 E-value=1.5 Score=38.85 Aligned_cols=42 Identities=24% Similarity=0.468 Sum_probs=31.5
Q ss_pred ccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCc
Q 025445 42 VWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPA 84 (252)
Q Consensus 42 ~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~ 84 (252)
-||| ...+-|=.|+=++-+.+.++++.+.|+||+-+|-.++.
T Consensus 110 ~W~G-ny~VkYW~~eWkdii~~~l~rL~d~GfdGvyLD~VD~y 151 (300)
T COG2342 110 EWPG-NYAVKYWEPEWKDIIRSYLDRLIDQGFDGVYLDVVDAY 151 (300)
T ss_pred CCCC-CceeeccCHHHHHHHHHHHHHHHHccCceEEEeeechH
Confidence 4777 34445556665666777778888999999999998875
No 38
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=86.14 E-value=2.5 Score=41.01 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=29.9
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCccEEEecCC
Q 025445 49 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 81 (252)
Q Consensus 49 ~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 81 (252)
-+|+.||++++...+.++..++.|||||=+|..
T Consensus 167 dln~~np~vr~~l~~~~~~w~~~GvDGfRlDav 199 (539)
T TIGR02456 167 DLNYDNPAVHDAVHDVMRFWLDLGVDGFRLDAV 199 (539)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecH
Confidence 477889999999999999999999999999974
No 39
>PRK10785 maltodextrin glucosidase; Provisional
Probab=85.70 E-value=2.9 Score=41.20 Aligned_cols=81 Identities=17% Similarity=0.322 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCC----CC---------------Cccc-eeecCC--CcccCCCcCCC--CCCC
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDY----MD---------------GFRC-FTFDKA--WEVWPGPCVFP--DYTQ 54 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~----~~---------------~~~~-f~~d~~--w~~w~g~~~~~--Dft~ 54 (252)
++++++++++.+++||- +|++...... .+ .+.+ |.|+.+ ...|.|....| |+.|
T Consensus 225 ~~df~~Lv~~aH~rGikVilD~V~NH~~~~~~~f~~~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~n 304 (598)
T PRK10785 225 DAALLRLRHATQQRGMRLVLDGVFNHTGDSHPWFDRHNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQS 304 (598)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCCcCCCCCHHHHHhhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCC
Confidence 37899999999999985 4555443332 11 1122 344332 23455544555 4679
Q ss_pred hhHHHHHHH----HHHHHHh--CCccEEEecCC
Q 025445 55 SKVRSWWGS----LVKDFIY--NGVDGIWNDMN 81 (252)
Q Consensus 55 p~a~~ww~~----~~~~~~~--~Gvdg~w~D~~ 81 (252)
|+++++..+ .++..++ .|||||=+|..
T Consensus 305 p~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva 337 (598)
T PRK10785 305 EEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVV 337 (598)
T ss_pred HHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecH
Confidence 999998764 6777776 49999999976
No 40
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=84.96 E-value=1 Score=40.74 Aligned_cols=42 Identities=24% Similarity=0.401 Sum_probs=36.1
Q ss_pred cccCCCcCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCC
Q 025445 41 EVWPGPCVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEP 83 (252)
Q Consensus 41 ~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~ 83 (252)
.-||| ..++|+.+|+-++...++++.+.+.|+||+-+|.-+.
T Consensus 130 ~~W~g-~~~vd~~~~~W~~il~~rl~~l~~kGfDGvfLD~lDs 171 (315)
T TIGR01370 130 PDWPG-NYDVKYWDPEWKAIAFSYLDRVIAQGFDGVYLDLIDA 171 (315)
T ss_pred CCCCC-ceeEecccHHHHHHHHHHHHHHHHcCCCeEeeccchh
Confidence 56787 5899999999888888888888899999999997664
No 41
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=84.86 E-value=4 Score=37.31 Aligned_cols=75 Identities=13% Similarity=0.224 Sum_probs=47.4
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCCCcccCCCcCCCCCCC---hh-HHHHHHHHHHHHHh-CCccEE
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKAWEVWPGPCVFPDYTQ---SK-VRSWWGSLVKDFIY-NGVDGI 76 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~w~~w~g~~~~~Dft~---p~-a~~ww~~~~~~~~~-~Gvdg~ 76 (252)
|-|.++++..|++||.+.+...-.||........-... ... +.-.. ++ ..++|..++++|++ +.+|.+
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~l 210 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGD-----ENG--PADGPGNWQRYYNEYWLAQLRELLTRYKPDIL 210 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCH-----HCC----HCCHHHHHHHHHHHHHHHHHHHHCSTESEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCC-----ccc--ccccchhhHhHhhhhhHHHHHHHHhCCCcceE
Confidence 56899999999999999999887787754321100000 000 00001 11 23488899999884 899999
Q ss_pred EecCCCC
Q 025445 77 WNDMNEP 83 (252)
Q Consensus 77 w~D~~E~ 83 (252)
|+|.+-+
T Consensus 211 WfDg~~~ 217 (346)
T PF01120_consen 211 WFDGGWP 217 (346)
T ss_dssp EEESTTS
T ss_pred EecCCCC
Confidence 9998754
No 42
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=84.70 E-value=3.8 Score=41.12 Aligned_cols=82 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCCCCC-----------cc-ceeecCC----CcccCCCcCCCCCCChhHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDYMDG-----------FR-CFTFDKA----WEVWPGPCVFPDYTQSKVRSWWG 62 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~~~~-----------~~-~f~~d~~----w~~w~g~~~~~Dft~p~a~~ww~ 62 (252)
++|++++|++++++||- +|++......... .. -|..+++ +..|.|-+.-+|+.+|.++++..
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHH
Confidence 36899999999999985 3555433321110 00 1112211 11233334568999999999999
Q ss_pred HHHHHHH-hCCccEEEecCCC
Q 025445 63 SLVKDFI-YNGVDGIWNDMNE 82 (252)
Q Consensus 63 ~~~~~~~-~~Gvdg~w~D~~E 82 (252)
+-++..+ +.|||||=+|...
T Consensus 324 d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred HHHHHHHHHcCCcEEEEechh
Confidence 9999987 5999999999754
No 43
>PLN00196 alpha-amylase; Provisional
Probab=84.46 E-value=4.2 Score=38.43 Aligned_cols=81 Identities=12% Similarity=0.111 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHcCCCc--cEEEEcCCCC--C------------CccceeecCC--------C-------cccCCCcCC-
Q 025445 2 ILIREFVRTFREKGIPC--DVIWMDIDYM--D------------GFRCFTFDKA--------W-------EVWPGPCVF- 49 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~--d~i~~D~~~~--~------------~~~~f~~d~~--------w-------~~w~g~~~~- 49 (252)
+|+++++++.+++||-+ |++....... . .+..+.|.+. | ..|.+...+
T Consensus 92 ~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lp 171 (428)
T PLN00196 92 AQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYCLFEGGTPDSRLDWGPHMICRDDTQYSDGTGNLDTGADFAAAP 171 (428)
T ss_pred HHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceEECCCCCCCCccccccccCCCCcccccCCCCceeCCCCCCCCC
Confidence 78999999999999853 5655443210 0 0111223211 1 111222344
Q ss_pred -CCCCChhHHHHHHHHHHHHH-hCCccEEEecCCC
Q 025445 50 -PDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMNE 82 (252)
Q Consensus 50 -~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~E 82 (252)
+|..||+++++..+.++-+. +.|||||=+|...
T Consensus 172 DLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak 206 (428)
T PLN00196 172 DIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAK 206 (428)
T ss_pred ccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhh
Confidence 45668999999988877665 5999999999764
No 44
>PRK12313 glycogen branching enzyme; Provisional
Probab=83.41 E-value=4.8 Score=39.90 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=51.3
Q ss_pred ChHHHHHHHHHHHcCCCccEEEEcCCCC------------CCccceeecCC---C-cccCCCcCCCCCCChhHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIPCDVIWMDIDYM------------DGFRCFTFDKA---W-EVWPGPCVFPDYTQSKVRSWWGSL 64 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~~D~~~~------------~~~~~f~~d~~---w-~~w~g~~~~~Dft~p~a~~ww~~~ 64 (252)
+++++++|++.+++||- |++|.-+- ++...|.+... + ..|. +.-+|+.||+++++..+.
T Consensus 219 ~~d~k~lv~~~H~~Gi~---VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~--~~~~n~~~~~vr~~l~~~ 293 (633)
T PRK12313 219 PEDFMYLVDALHQNGIG---VILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWG--ALNFDLGKNEVRSFLISS 293 (633)
T ss_pred HHHHHHHHHHHHHCCCE---EEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCC--CcccCCCCHHHHHHHHHH
Confidence 37899999999999984 44443211 11111222110 0 1232 245789999999999999
Q ss_pred HHHHHh-CCccEEEecCCC
Q 025445 65 VKDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 65 ~~~~~~-~Gvdg~w~D~~E 82 (252)
++..++ .|||||=+|...
T Consensus 294 ~~~W~~~~~iDG~R~D~~~ 312 (633)
T PRK12313 294 ALFWLDEYHLDGLRVDAVS 312 (633)
T ss_pred HHHHHHHhCCcEEEEcChh
Confidence 998885 799999999764
No 45
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=81.62 E-value=5.6 Score=35.84 Aligned_cols=77 Identities=17% Similarity=0.307 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC--------ccc-eeec-CCCcccC----CCcCCCCCCChhHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG--------FRC-FTFD-KAWEVWP----GPCVFPDYTQSKVRSWWGSLVKD 67 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~--------~~~-f~~d-~~w~~w~----g~~~~~Dft~p~a~~ww~~~~~~ 67 (252)
|-+..++++-+++||-+-+.. -..-... ... ++-+ ++|...- +...++|-.+|+++++-.+.+++
T Consensus 70 DpL~~~I~eaHkrGlevHAW~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~E 148 (311)
T PF02638_consen 70 DPLEFMIEEAHKRGLEVHAWF-RVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKE 148 (311)
T ss_pred cHHHHHHHHHHHcCCEEEEEE-EeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHH
Confidence 347788999999999988765 1111110 100 1111 1121111 45679999999999999999999
Q ss_pred HH-hCCccEEEec
Q 025445 68 FI-YNGVDGIWND 79 (252)
Q Consensus 68 ~~-~~Gvdg~w~D 79 (252)
++ ++.|||+-+|
T Consensus 149 iv~~YdvDGIhlD 161 (311)
T PF02638_consen 149 IVKNYDVDGIHLD 161 (311)
T ss_pred HHhcCCCCeEEec
Confidence 88 5999999999
No 46
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=80.35 E-value=6.9 Score=38.60 Aligned_cols=80 Identities=14% Similarity=0.230 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCC------CCCCccceee--cCC--CcccCCCcCCCCCCChhHHHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDID------YMDGFRCFTF--DKA--WEVWPGPCVFPDYTQSKVRSWWGSLVKDFI 69 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~------~~~~~~~f~~--d~~--w~~w~g~~~~~Dft~p~a~~ww~~~~~~~~ 69 (252)
+|++++|++.+++||- +|++..... +......+.+ +.. +..+.|-+.-++..+|+++++..+.++..+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~ 308 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWV 308 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHH
Confidence 6899999999999974 455554321 1110111111 111 111222233467789999999999999887
Q ss_pred h-CCccEEEecCC
Q 025445 70 Y-NGVDGIWNDMN 81 (252)
Q Consensus 70 ~-~Gvdg~w~D~~ 81 (252)
+ .|||||=+|..
T Consensus 309 ~e~~iDGfR~D~~ 321 (605)
T TIGR02104 309 KEYNIDGFRFDLM 321 (605)
T ss_pred HHcCCCEEEEech
Confidence 5 89999999976
No 47
>PRK14706 glycogen branching enzyme; Provisional
Probab=79.65 E-value=22 Score=35.45 Aligned_cols=127 Identities=15% Similarity=0.171 Sum_probs=71.5
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCCC-------CCccceeec-C--CC-cccCCCcCCCCCCChhHHHHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDYM-------DGFRCFTFD-K--AW-EVWPGPCVFPDYTQSKVRSWWGSLVKD 67 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~~-------~~~~~f~~d-~--~w-~~w~g~~~~~Dft~p~a~~ww~~~~~~ 67 (252)
+++++++|++.+++||- +|++....... ++...+.+. . .+ ..|. +..+|+.+|+++++..+-++.
T Consensus 216 ~~~~~~lv~~~H~~gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~--~~~~~~~~~eVr~~l~~~~~~ 293 (639)
T PRK14706 216 PEDFKYLVNHLHGLGIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWN--TYIFDYGRNEVVMFLIGSALK 293 (639)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCC--CcccCCCCHHHHHHHHHHHHH
Confidence 37899999999999985 34554432221 111111111 1 01 1232 235899999999999999998
Q ss_pred HH-hCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEe
Q 025445 68 FI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLT 143 (252)
Q Consensus 68 ~~-~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~s 143 (252)
.+ +.+||||=+|...-..+...... ... + ..-|| -.|+-+....+...+.+++..|+ -++++
T Consensus 294 W~~e~~iDG~R~Dav~~~ly~d~~~~----~~~-~-~~~gg------~~n~~a~~fl~~ln~~v~~~~p~--~~~iA 356 (639)
T PRK14706 294 WLQDFHVDGLRVDAVASMLYLDFSRT----EWV-P-NIHGG------RENLEAIAFLKRLNEVTHHMAPG--CMMIA 356 (639)
T ss_pred HHHHhCCCeEEEeeehheeecccCcc----ccc-c-cccCC------cccHHHHHHHHHHHHHHHHhCCC--eEEEE
Confidence 87 59999999997653322111100 000 0 00111 12555666667777777765432 35555
No 48
>PLN02784 alpha-amylase
Probab=78.54 E-value=7.8 Score=39.74 Aligned_cols=83 Identities=19% Similarity=0.172 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCC--CCC---c----cceeecCCC-----cccCCC---------cC--CCCCC
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDY--MDG---F----RCFTFDKAW-----EVWPGP---------CV--FPDYT 53 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~--~~~---~----~~f~~d~~w-----~~w~g~---------~~--~~Dft 53 (252)
++|+++++++++++||- +|++.....- ... + ..++|+..- ..|+|. .. =+|.+
T Consensus 567 ~~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~~f~g~~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~ 646 (894)
T PLN02784 567 IDELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWNIFGGRLNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHS 646 (894)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECcccccccccCCCCcccccCCeecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCC
Confidence 37899999999999985 3666554321 111 0 112333210 112221 23 35567
Q ss_pred ChhHHHHHHHHHHHHH-hCCccEEEecCCCC
Q 025445 54 QSKVRSWWGSLVKDFI-YNGVDGIWNDMNEP 83 (252)
Q Consensus 54 ~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~E~ 83 (252)
||.+++..++-++-+. +.|||||=+|+.-.
T Consensus 647 npeVR~eL~~WlkWL~~e~G~DGfRLDaVKg 677 (894)
T PLN02784 647 QDFVRKDLKEWLCWMRKEVGYDGWRLDFVRG 677 (894)
T ss_pred CHHHHHHHHHHHHHHHhccCCCEEEEeccCC
Confidence 8999998888887776 58999999999753
No 49
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=78.46 E-value=11 Score=29.64 Aligned_cols=76 Identities=22% Similarity=0.314 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC----Cccce-eecCCCc-------ccCCCcCCCCCCChhHHHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD----GFRCF-TFDKAWE-------VWPGPCVFPDYTQSKVRSWWGSLVKDFI 69 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~----~~~~f-~~d~~w~-------~w~g~~~~~Dft~p~a~~ww~~~~~~~~ 69 (252)
|-+.++++..+++||-+=+. +|..|-+ .+.++ --|++-+ .-|+ -...-++ ..-++.-..++++++
T Consensus 44 Dllge~v~a~h~~Girv~ay-~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~-~~~~c~n-s~Y~e~~~~~i~Ei~ 120 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAY-FDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPG-WYTCCLN-SPYREFLLEQIREIL 120 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEE-EeeecChHHHHhCCceeeECCCCCCcCCCCcCCCC-ceecCCC-ccHHHHHHHHHHHHH
Confidence 34678999999999976433 3333221 11111 0111100 0011 1123333 345578888888888
Q ss_pred h-CCccEEEecC
Q 025445 70 Y-NGVDGIWNDM 80 (252)
Q Consensus 70 ~-~Gvdg~w~D~ 80 (252)
+ +++||+++|+
T Consensus 121 ~~y~~DGiF~D~ 132 (132)
T PF14871_consen 121 DRYDVDGIFFDI 132 (132)
T ss_pred HcCCCCEEEecC
Confidence 5 9999999996
No 50
>PLN02960 alpha-amylase
Probab=77.83 E-value=23 Score=36.60 Aligned_cols=83 Identities=18% Similarity=0.217 Sum_probs=54.4
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCCC--------CCcc-ceeec-CC-C-cccCCCcCCCCCCChhHHHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDYM--------DGFR-CFTFD-KA-W-EVWPGPCVFPDYTQSKVRSWWGSLVK 66 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~~--------~~~~-~f~~d-~~-w-~~w~g~~~~~Dft~p~a~~ww~~~~~ 66 (252)
+++++++|++.+++||- +|++.....-. ++.. .|... .. . ..| | +..+|+.+|+++++..+.++
T Consensus 465 p~dfk~LVd~aH~~GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~W-G-~~~fNy~~~eVr~fLlsna~ 542 (897)
T PLN02960 465 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRW-G-TRMFKYGDHEVLHFLLSNLN 542 (897)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCC-C-CcccCCCCHHHHHHHHHHHH
Confidence 37899999999999984 24443322111 1111 11110 00 0 134 3 35689999999999999999
Q ss_pred HHH-hCCccEEEecCCCCcc
Q 025445 67 DFI-YNGVDGIWNDMNEPAV 85 (252)
Q Consensus 67 ~~~-~~Gvdg~w~D~~E~~~ 85 (252)
..+ +.+||||-+|......
T Consensus 543 yWl~EyhIDGfR~DAV~sMl 562 (897)
T PLN02960 543 WWVTEYRVDGFQFHSLGSML 562 (897)
T ss_pred HHHHHHCCCceeecccceee
Confidence 987 5899999999876543
No 51
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=77.60 E-value=8.4 Score=37.50 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCC----CCCCccc-eeecCCCcccCCCcCCCCCCCh---hHHHHHHHHHHHHHh-
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDID----YMDGFRC-FTFDKAWEVWPGPCVFPDYTQS---KVRSWWGSLVKDFIY- 70 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~----~~~~~~~-f~~d~~w~~w~g~~~~~Dft~p---~a~~ww~~~~~~~~~- 70 (252)
++++++|++.+++||- +|++..... |...+.. |..+.. ..| | .-+|+.+| +++++..+.++..++
T Consensus 160 ~e~k~lV~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~-~~w-g--~~~n~~~~~~~~vr~~i~~~~~~W~~e 235 (542)
T TIGR02402 160 DDLKALVDAAHGLGLGVILDVVYNHFGPEGNYLPRYAPYFTDRYS-TPW-G--AAINFDGPGSDEVRRYILDNALYWLRE 235 (542)
T ss_pred HHHHHHHHHHHHCCCEEEEEEccCCCCCccccccccCccccCCCC-CCC-C--CccccCCCcHHHHHHHHHHHHHHHHHH
Confidence 7899999999999985 344443222 1111111 211111 123 2 24899999 999999999988874
Q ss_pred CCccEEEecCCC
Q 025445 71 NGVDGIWNDMNE 82 (252)
Q Consensus 71 ~Gvdg~w~D~~E 82 (252)
.|||||=+|...
T Consensus 236 ~~iDGfR~D~~~ 247 (542)
T TIGR02402 236 YHFDGLRLDAVH 247 (542)
T ss_pred hCCcEEEEeCHH
Confidence 899999999753
No 52
>PLN03244 alpha-amylase; Provisional
Probab=77.57 E-value=36 Score=34.86 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=77.3
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCC--------CCCcc--ceeecCC-C-cccCCCcCCCCCCChhHHHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDY--------MDGFR--CFTFDKA-W-EVWPGPCVFPDYTQSKVRSWWGSLVK 66 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~--------~~~~~--~f~~d~~-w-~~w~g~~~~~Dft~p~a~~ww~~~~~ 66 (252)
+++++++|++.+++||- +|+|.....- .++.. .|.-++. . ..| | +...|+.+++++++.-+-++
T Consensus 440 PeDLK~LVD~aH~~GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~W-G-s~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 440 PDDFKRLVDEAHGLGLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHW-G-TRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred HHHHHHHHHHHHHCCCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCC-C-CceecCCCHHHHHHHHHHHH
Confidence 37899999999999984 2333321110 01101 1111111 0 134 3 36789999999999999999
Q ss_pred HHH-hCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEec-
Q 025445 67 DFI-YNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTR- 144 (252)
Q Consensus 67 ~~~-~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sR- 144 (252)
..+ +.+|||+-+|...-..|.+.+. ..+.+. +..+.+ ..-|.-+..+.+...+.+.+..| ..++++-
T Consensus 518 yWleEyhIDGFRfDaVtSMLY~d~G~-----~~f~g~---~~~y~n-~~~d~dAv~fL~laN~~ih~~~P--~~itIAED 586 (872)
T PLN03244 518 WWITEYQIDGFQFHSLASMIYTHNGF-----ASFNGD---LDDYCN-QYVDKDALMYLILANEILHALHP--KIITIAED 586 (872)
T ss_pred HHHHHhCcCcceeecchhheeecccc-----ccccCC---cccccc-ccCCchHHHHHHHHHHHHHHhCC--CeEEEEEc
Confidence 987 5999999999875433322110 000000 000000 11245566677777777777654 3455553
Q ss_pred -cccCCCC
Q 025445 145 -AGFIGSQ 151 (252)
Q Consensus 145 -s~~~g~~ 151 (252)
|++++.-
T Consensus 587 sS~~P~vt 594 (872)
T PLN03244 587 ATYYPGLC 594 (872)
T ss_pred CCCCcCcc
Confidence 6666544
No 53
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=76.38 E-value=3.1 Score=36.14 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCC
Q 025445 48 VFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 82 (252)
Q Consensus 48 ~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 82 (252)
.-+|+.||++++...+.++..++.|||||-+|...
T Consensus 137 ~dln~~n~~v~~~i~~~~~~w~~~giDGfR~D~~~ 171 (316)
T PF00128_consen 137 PDLNYENPEVREYIIDVLKFWIEEGIDGFRLDAAK 171 (316)
T ss_dssp EEBETTSHHHHHHHHHHHHHHHHTTESEEEETTGG
T ss_pred chhhhhhhhhhhhhcccccchhhceEeEEEEcccc
Confidence 34567899999999998899999999999999854
No 54
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=75.57 E-value=9.1 Score=37.85 Aligned_cols=79 Identities=19% Similarity=0.183 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCC----C---Cccceeec-CC--C-cccCCCcCCCCCCChhHHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYM----D---GFRCFTFD-KA--W-EVWPGPCVFPDYTQSKVRSWWGSLVKDF 68 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~----~---~~~~f~~d-~~--w-~~w~g~~~~~Dft~p~a~~ww~~~~~~~ 68 (252)
++++++|++.+++||- +|++....... . +...|... .. + ..| | ..-+|+.+|+++++..+.++..
T Consensus 206 ~dlk~lV~~~H~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w-~-~~~~~~~~~~Vr~~l~~~~~~W 283 (613)
T TIGR01515 206 DDFMYFVDACHQAGIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDW-G-TLIFDYGRPEVRNFLVANALYW 283 (613)
T ss_pred HHHHHHHHHHHHCCCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCC-C-CceecCCCHHHHHHHHHHHHHH
Confidence 6899999999999985 34443322110 0 00001110 00 0 122 2 3457899999999999999998
Q ss_pred Hh-CCccEEEecCCC
Q 025445 69 IY-NGVDGIWNDMNE 82 (252)
Q Consensus 69 ~~-~Gvdg~w~D~~E 82 (252)
++ .|||||-+|...
T Consensus 284 ~~ey~iDG~R~D~v~ 298 (613)
T TIGR01515 284 AEFYHIDGLRVDAVA 298 (613)
T ss_pred HHHhCCcEEEEcCHH
Confidence 85 899999999853
No 55
>PRK09505 malS alpha-amylase; Reviewed
Probab=72.76 E-value=12 Score=37.67 Aligned_cols=29 Identities=17% Similarity=0.364 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHHHh-CCccEEEecCCC
Q 025445 54 QSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 54 ~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 82 (252)
||+++++..+.++..++ .|||||=+|...
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaak 464 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTAK 464 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEechH
Confidence 45888898888888885 899999999764
No 56
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=72.30 E-value=5.1 Score=39.09 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=30.1
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCccEEEecCCC
Q 025445 49 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 82 (252)
Q Consensus 49 ~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 82 (252)
=+|+.||++++...+.++..++.|||||=+|...
T Consensus 170 dLn~~np~V~~~l~~~~~~W~~~GvDGfRlDa~~ 203 (551)
T PRK10933 170 DLNWENPAVRAELKKVCEFWADRGVDGLRLDVVN 203 (551)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHCCCcEEEEcchh
Confidence 4567899999999999999999999999999664
No 57
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=70.82 E-value=53 Score=33.49 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=53.6
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcCCCC--CCcccee--------ecCC-Cc-ccCCCcCCCCCCChhHHHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDIDYM--DGFRCFT--------FDKA-WE-VWPGPCVFPDYTQSKVRSWWGSLVK 66 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~~~~--~~~~~f~--------~d~~-w~-~w~g~~~~~Dft~p~a~~ww~~~~~ 66 (252)
+++++++|++.+++||- +|++.....-. .+...|+ -+.. +. .| | +..+|+.+++++++..+.++
T Consensus 299 p~dlk~LVd~aH~~GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w-~-~~~~N~~~~eVr~fLl~~~~ 376 (758)
T PLN02447 299 PEDLKYLIDKAHSLGLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLW-D-SRLFNYGNWEVLRFLLSNLR 376 (758)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcC-C-CceecCCCHHHHHHHHHHHH
Confidence 37899999999999984 34443321110 0111111 0000 11 23 2 34689999999999999999
Q ss_pred HHHh-CCccEEEecCCCCcc
Q 025445 67 DFIY-NGVDGIWNDMNEPAV 85 (252)
Q Consensus 67 ~~~~-~Gvdg~w~D~~E~~~ 85 (252)
..++ .+||||-+|...-..
T Consensus 377 ~Wl~ey~IDGfRfDaV~sml 396 (758)
T PLN02447 377 WWLEEYKFDGFRFDGVTSML 396 (758)
T ss_pred HHHHHhCcccccccchhhhh
Confidence 9885 899999999876543
No 58
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=70.68 E-value=12 Score=34.80 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC-ccceeecCCCcccCCCcCCCCCCChhHHHHH---HHHHHHHHh-CCccEE
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG-FRCFTFDKAWEVWPGPCVFPDYTQSKVRSWW---GSLVKDFIY-NGVDGI 76 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~-~~~f~~d~~w~~w~g~~~~~Dft~p~a~~ww---~~~~~~~~~-~Gvdg~ 76 (252)
|-|.++++..|++||.+.+.+.-.||... +.+. .+. .-.....+.-.++. ..++++|+. +|-|.+
T Consensus 128 Div~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~-~~~---------~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~l 197 (384)
T smart00812 128 DLVGELADAVRKRGLKFGLYHSLFDWFNPLYAGP-TSS---------DEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLL 197 (384)
T ss_pred chHHHHHHHHHHcCCeEEEEcCHHHhCCCccccc-ccc---------ccccccchhHHHHHHHHHHHHHHHHhcCCCceE
Confidence 45889999999999999998776677532 1110 000 00111233344554 889999985 888999
Q ss_pred EecCCC
Q 025445 77 WNDMNE 82 (252)
Q Consensus 77 w~D~~E 82 (252)
|+|..-
T Consensus 198 WfD~~~ 203 (384)
T smart00812 198 WFDGGW 203 (384)
T ss_pred EEeCCC
Confidence 999864
No 59
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=70.34 E-value=16 Score=33.13 Aligned_cols=80 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHcCC-Ccc-EEEE-cCCCCCCccceeecCC-CcccCC--CcCCCCCCChhHHHHHHHHHHHHHhCCccE
Q 025445 2 ILIREFVRTFREKGI-PCD-VIWM-DIDYMDGFRCFTFDKA-WEVWPG--PCVFPDYTQSKVRSWWGSLVKDFIYNGVDG 75 (252)
Q Consensus 2 ~~v~~~~~~~~~~~i-P~d-~i~~-D~~~~~~~~~f~~d~~-w~~w~g--~~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg 75 (252)
.++.+++++++++|| |+- ++++ |+---....++.+..+ -.+|-+ ...|+|-+++++.++--+.-++..+.|||.
T Consensus 61 ~D~~~l~~~l~e~gIY~IARIv~FkD~~la~~~pe~av~~~~G~~w~d~~~~~WvnP~~~evw~Y~i~IA~Eaa~~GFdE 140 (316)
T PF13200_consen 61 KDLKALVKKLKEHGIYPIARIVVFKDPVLAEAHPEWAVKTKDGSVWRDNEGEAWVNPYSKEVWDYNIDIAKEAAKLGFDE 140 (316)
T ss_pred cCHHHHHHHHHHCCCEEEEEEEEecChHHhhhChhhEEECCCCCcccCCCCCccCCCCCHHHHHHHHHHHHHHHHcCCCE
Confidence 367899999999997 433 2333 3322233455555322 134432 267999999999999999889999999999
Q ss_pred EEecCC
Q 025445 76 IWNDMN 81 (252)
Q Consensus 76 ~w~D~~ 81 (252)
+-+|--
T Consensus 141 IqfDYI 146 (316)
T PF13200_consen 141 IQFDYI 146 (316)
T ss_pred EEeeee
Confidence 999964
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=69.10 E-value=20 Score=36.26 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=50.6
Q ss_pred ChHHHHHHHHHHHcCCCccEEEEcCCC--CC----------CccceeecC---CC-cccCCCcCCCCCCChhHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIPCDVIWMDIDY--MD----------GFRCFTFDK---AW-EVWPGPCVFPDYTQSKVRSWWGSL 64 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~~D~~~--~~----------~~~~f~~d~---~w-~~w~g~~~~~Dft~p~a~~ww~~~ 64 (252)
+++++++|++.+++||- |++|.-+ .. +...|.... .+ ..|. +..+|+.||+++++..+.
T Consensus 314 ~~dfk~lV~~~H~~Gi~---VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~--~~~~n~~~~~v~~~l~~~ 388 (726)
T PRK05402 314 PDDFRYFVDACHQAGIG---VILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWG--TLIFNYGRNEVRNFLVAN 388 (726)
T ss_pred HHHHHHHHHHHHHCCCE---EEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCC--CccccCCCHHHHHHHHHH
Confidence 37899999999999985 4444321 10 000011100 00 1222 235799999999999999
Q ss_pred HHHHHh-CCccEEEecCCC
Q 025445 65 VKDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 65 ~~~~~~-~Gvdg~w~D~~E 82 (252)
++..++ .|||||=+|...
T Consensus 389 ~~~W~~e~~iDG~R~D~v~ 407 (726)
T PRK05402 389 ALYWLEEFHIDGLRVDAVA 407 (726)
T ss_pred HHHHHHHhCCcEEEECCHH
Confidence 998875 899999999754
No 61
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=68.60 E-value=20 Score=36.00 Aligned_cols=81 Identities=16% Similarity=0.228 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCCCCc-cc-----------eeecCC--CcccCCCcCCCCCCChhHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYMDGF-RC-----------FTFDKA--WEVWPGPCVFPDYTQSKVRSWWGSLV 65 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~~~~-~~-----------f~~d~~--w~~w~g~~~~~Dft~p~a~~ww~~~~ 65 (252)
.|++++|++++++||- +|||....-=.+.. .. |-.|++ ..-+.|-+.-+.-+||-+++|--+-|
T Consensus 265 ~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsL 344 (697)
T COG1523 265 KEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSL 344 (697)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHH
Confidence 4899999999999984 46665443110000 11 112222 13455666688889999999999999
Q ss_pred HHHHh-CCccEEEecCCC
Q 025445 66 KDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 66 ~~~~~-~Gvdg~w~D~~E 82 (252)
+.+++ ++||||-+|+.-
T Consensus 345 rYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 345 RYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred HHHHHHhCCCceeecchh
Confidence 99885 999999999863
No 62
>PRK12568 glycogen branching enzyme; Provisional
Probab=68.11 E-value=22 Score=35.98 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCC----ccceeecCC--C----------cccCCCcCCCCCCChhHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKA--W----------EVWPGPCVFPDYTQSKVRSWWGSLV 65 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~----~~~f~~d~~--w----------~~w~g~~~~~Dft~p~a~~ww~~~~ 65 (252)
++++++|++.+++||- |++|.-+-.- ..-..||.. + ..|. +..+|+.+|+++++..+.+
T Consensus 319 ~dfk~lV~~~H~~Gi~---VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~--~~~~N~~~peVr~~li~~a 393 (730)
T PRK12568 319 DGFAQFVDACHRAGIG---VILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWN--TLIYNYGRPEVTAYLLGSA 393 (730)
T ss_pred HHHHHHHHHHHHCCCE---EEEEeccccCCccccccccCCCccccccCCCcCCccCCCC--CeecccCCHHHHHHHHHHH
Confidence 6899999999999984 4444322110 000011110 0 1222 2357999999999999999
Q ss_pred HHHHh-CCccEEEecCCC
Q 025445 66 KDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 66 ~~~~~-~Gvdg~w~D~~E 82 (252)
+..++ .+||||=+|...
T Consensus 394 ~~Wl~eyhIDG~R~DAva 411 (730)
T PRK12568 394 LEWIEHYHLDGLRVDAVA 411 (730)
T ss_pred HHHHHHhCceEEEEcCHh
Confidence 88874 899999999754
No 63
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=67.54 E-value=7 Score=38.03 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=30.0
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCccEEEecCCC
Q 025445 49 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 82 (252)
Q Consensus 49 ~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 82 (252)
=+|+.||++++...+.++..++.|||||=+|...
T Consensus 163 dln~~np~v~~~i~~~~~~W~~~giDGfRlDa~~ 196 (543)
T TIGR02403 163 DLNWENPEVREELKDVVNFWRDKGVDGFRLDVIN 196 (543)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeeh
Confidence 3677899999999999998889999999999764
No 64
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=67.25 E-value=8.4 Score=37.52 Aligned_cols=205 Identities=18% Similarity=0.176 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCc-------cceeecCC----------------------C------------
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGF-------RCFTFDKA----------------------W------------ 40 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~-------~~f~~d~~----------------------w------------ 40 (252)
|++++.++.-.+ ++++.++||.+|+.+. +|+-.+.+ |
T Consensus 309 e~ile~vk~akk--~gvE~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dSdl 386 (687)
T COG3345 309 EEILENVKEAKK--FGVELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDSDL 386 (687)
T ss_pred HHHHHHHHHHhh--cCeEEEEEccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccchHH
Confidence 577777776554 5599999999999543 45555544 2
Q ss_pred ----ccc----CC-------CcCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCC
Q 025445 41 ----EVW----PG-------PCVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDE 104 (252)
Q Consensus 41 ----~~w----~g-------~~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~ 104 (252)
--| +| ....+|+.||.....-++.+-. +...-||.++-|||--- +. + .....+.
T Consensus 387 frqHPDWvvk~~G~p~~~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l-~k------l-g~~~~~~-- 456 (687)
T COG3345 387 FRQHPDWVVKVNGYPLMAGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNREL-FK------L-GFLFWGA-- 456 (687)
T ss_pred HhhCCCeEEecCCccccccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcce-ee------c-CCCCCcc--
Confidence 011 12 2356688899888876666644 34566777777776321 11 0 0011111
Q ss_pred CCCccccchhhhhhHHHHHHHHHHHHHhhcCCCCcEEEeccccCCCCCc--------ceeecCCCCCChhHHHHHHHHHH
Q 025445 105 IGGCQNHSYYHNVYGMLMARSTYEGMKLADKDKRPFVLTRAGFIGSQRY--------AATWTGDNVSNWEHLHMSISMVL 176 (252)
Q Consensus 105 ~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~~r~--------~~~W~GD~~ssW~~L~~~I~~~l 176 (252)
...- .-.+|- .++.+. .+.|-++--|.-.|..|+ +..|.-|..-.=+-|+ |
T Consensus 457 ----l~qq-ry~ly~------l~~~l~----~k~~~i~FeScasGg~r~d~gml~~~~~~w~Sd~~dAi~r~~--i---- 515 (687)
T COG3345 457 ----LPQQ-RYQLYR------LFDQLN----LKFPHILFESCASGGERIDKGMLEYSPQLWCSDLTDAIGRLD--I---- 515 (687)
T ss_pred ----ccch-HHHHHH------HHHHhh----hcCCCchhhhhcccccccchHHhhhcccccCCCCcchhhhcc--c----
Confidence 0000 011221 123332 355666666666666554 2478877653211111 1
Q ss_pred Hhhcc-CCC--ccccCCCCCCCCCChhHHHHHHhhccccc---cccccCCCCCCCCCCcccChhHHHHHHHHHHHHhh
Q 025445 177 QLGLS-GQP--FSGPDIGGFDGNATPRLFGRWMGIGAMFP---FCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFW 248 (252)
Q Consensus 177 ~~~l~-G~~--~~g~DigGf~~~~~~eL~~RW~Q~~~f~P---~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~~~ 248 (252)
.-|.+ =+| ++|..|++ .+-=-+||+---.+.. +|+.-+ ..-.|-.-.++-++++.+.+.||.-
T Consensus 516 qrg~s~~~P~~~mGaHi~~-----~p~h~~~rm~~l~~rg~~a~~g~~g----~elD~~~lsdeek~~~akqialyke 584 (687)
T COG3345 516 QRGGSYTYPPESMGAHISA-----VPNHQARRMTSLETRGLVAHFGFWG----YELDCTILSDEEKDLTAKQIALYKE 584 (687)
T ss_pred cccCcccCChHHhhhhccC-----CCcHHHhhhhhhhhhhHHHHhhhhc----cCCCcccCCHHHHHHHHHHHHHHHH
Confidence 11111 133 44444543 2223466665444433 333322 3566777788888999999988864
No 65
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=67.20 E-value=46 Score=30.99 Aligned_cols=170 Identities=18% Similarity=0.222 Sum_probs=91.1
Q ss_pred HHHHHHHHHHcC---CCccEEEEcCCCCCCccceeecCC--CcccCC---------------CcCCCC------CCChhH
Q 025445 4 IREFVRTFREKG---IPCDVIWMDIDYMDGFRCFTFDKA--WEVWPG---------------PCVFPD------YTQSKV 57 (252)
Q Consensus 4 v~~~~~~~~~~~---iP~d~i~~D~~~~~~~~~f~~d~~--w~~w~g---------------~~~~~D------ft~p~a 57 (252)
+.++++.+.+.| +-..-|.+|.=|.+..++++-.-. =+.+|. .+.+-| ...|..
T Consensus 62 ~~~~ad~mvseG~~~vGY~yi~iDDCW~e~~Rd~~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PGS 141 (414)
T KOG2366|consen 62 FKEMADAMVSEGLADVGYEYINIDDCWSEVTRDSDGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPGS 141 (414)
T ss_pred HHHHHHHHHHhHHHhcCcEEEechhhhhhhccCCccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCcc
Confidence 456777777766 456778889889888777655211 011111 011111 222333
Q ss_pred HHHHHHHHHHHHhCCccEEEecCCCCcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHHHHHHHHHHHHHhhcCCC
Q 025445 58 RSWWGSLVKDFIYNGVDGIWNDMNEPAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGMLMARSTYEGMKLADKDK 137 (252)
Q Consensus 58 ~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~~~~~a~~~~~~~~~~~~ 137 (252)
...-..--+.+.+-|||.+++|.+..... ..-..|+. +.++ + +...
T Consensus 142 ~~~e~~DA~tFA~WgvDylKlD~C~~~~~--------------------------~~~~~Yp~-ms~a----L---N~tG 187 (414)
T KOG2366|consen 142 LGHEESDAKTFADWGVDYLKLDGCFNNLI--------------------------TMPEGYPI-MSRA----L---NNTG 187 (414)
T ss_pred cchhhhhhhhhHhhCCcEEeccccccccc--------------------------cccccchh-HHHH----H---hccC
Confidence 33322223445567888888887643110 00112332 1122 2 2357
Q ss_pred CcEEEe-ccc---cCC---------CCCcceee--cCCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCC-------
Q 025445 138 RPFVLT-RAG---FIG---------SQRYAATW--TGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDG------- 195 (252)
Q Consensus 138 r~~~~s-Rs~---~~g---------~~r~~~~W--~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~------- 195 (252)
||++.| ++- ..+ .+.+...| .+|+..+|..+.+.|.......-.=.|.-|+ ||...
T Consensus 188 rpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agP--g~WNDpDmL~iG 265 (414)
T KOG2366|consen 188 RPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGP--GGWNDPDMLEIG 265 (414)
T ss_pred CceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCC--CCCCChhHhhcC
Confidence 999999 442 112 22233344 4888899988777776555566666777777 76652
Q ss_pred C--CChhHHHHHHhhccc
Q 025445 196 N--ATPRLFGRWMGIGAM 211 (252)
Q Consensus 196 ~--~~~eL~~RW~Q~~~f 211 (252)
+ -+.|+|. .|++..
T Consensus 266 N~G~s~e~y~--~qf~lW 281 (414)
T KOG2366|consen 266 NGGMSYEEYK--GQFALW 281 (414)
T ss_pred CCCccHHHHH--HHHHHH
Confidence 1 3567776 444443
No 66
>PRK13840 sucrose phosphorylase; Provisional
Probab=67.07 E-value=7.6 Score=37.43 Aligned_cols=33 Identities=18% Similarity=0.052 Sum_probs=29.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHhCCccEEEecCC
Q 025445 49 FPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 81 (252)
Q Consensus 49 ~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 81 (252)
=+|+.||++++...+.++.+.+.|||||=+|..
T Consensus 163 DLN~~NP~V~~~i~~il~fwl~~GVDgfRLDAv 195 (495)
T PRK13840 163 DIDVHSAAGWEYLMSILDRFAASHVTLIRLDAA 195 (495)
T ss_pred eeCCCCHHHHHHHHHHHHHHHHCCCCEEEEech
Confidence 356779999999999999999999999999985
No 67
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=65.85 E-value=29 Score=36.91 Aligned_cols=78 Identities=15% Similarity=0.125 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCCCC----ccc-eeec-CC---CcccCCCcCCCCCCChhHHHHHHHHHHHHHh
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYMDG----FRC-FTFD-KA---WEVWPGPCVFPDYTQSKVRSWWGSLVKDFIY 70 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~~~----~~~-f~~d-~~---w~~w~g~~~~~Dft~p~a~~ww~~~~~~~~~ 70 (252)
+|++++|++++++||- +|++......... ... |.+. .. ...|. +.-++..||.++++..+-++..++
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~--g~~l~~e~~~vrk~iiDsl~yWv~ 632 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFG--GGRLGTTHEMSRRILVDSIKYLVD 632 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccC--CCCCCcCCHHHHHHHHHHHHHHHH
Confidence 6899999999999986 4666644321110 011 1111 10 01122 345778899999999999999875
Q ss_pred -CCccEEEecCC
Q 025445 71 -NGVDGIWNDMN 81 (252)
Q Consensus 71 -~Gvdg~w~D~~ 81 (252)
+|||||-+|+.
T Consensus 633 ey~VDGFRfDl~ 644 (1111)
T TIGR02102 633 EFKVDGFRFDMM 644 (1111)
T ss_pred hcCCcEEEEecc
Confidence 89999999964
No 68
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=64.69 E-value=15 Score=35.18 Aligned_cols=35 Identities=14% Similarity=0.090 Sum_probs=31.2
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCC
Q 025445 47 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMN 81 (252)
Q Consensus 47 ~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~ 81 (252)
..=+|+.||++++...+.++.+.+.|||||=+|..
T Consensus 157 QpDLN~~np~v~e~i~~il~fwl~~GvdgfRLDAv 191 (470)
T TIGR03852 157 QIDLDVTSETTKRFIRDNLENLAEHGASIIRLDAF 191 (470)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHcCCCEEEEecc
Confidence 45567889999999999999999999999999987
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=63.83 E-value=75 Score=34.25 Aligned_cols=81 Identities=20% Similarity=0.286 Sum_probs=51.7
Q ss_pred ChHHHHHHHHHHHcCCC--ccEEEEcC---CCC----CCccceee-cCC---CcccCCCcCCCCCCChhHHHHHHHHHHH
Q 025445 1 MILIREFVRTFREKGIP--CDVIWMDI---DYM----DGFRCFTF-DKA---WEVWPGPCVFPDYTQSKVRSWWGSLVKD 67 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP--~d~i~~D~---~~~----~~~~~f~~-d~~---w~~w~g~~~~~Dft~p~a~~ww~~~~~~ 67 (252)
+++++++|++.+++||- +|++.... .|. ++...|+. |+. ..-|.. ..+|+.+++++++..+-++.
T Consensus 814 ~~dfk~lVd~~H~~GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~--~~fn~~~~eVr~fli~~a~~ 891 (1224)
T PRK14705 814 PDEFRFLVDSLHQAGIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGT--LIFDFGRTEVRNFLVANALY 891 (1224)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCC--ceecCCCHHHHHHHHHHHHH
Confidence 37899999999999984 23332211 010 01011111 110 012332 45899999999999999988
Q ss_pred HHh-CCccEEEecCCCC
Q 025445 68 FIY-NGVDGIWNDMNEP 83 (252)
Q Consensus 68 ~~~-~Gvdg~w~D~~E~ 83 (252)
.++ .+||||=+|...-
T Consensus 892 Wl~eyhiDGfR~Dav~~ 908 (1224)
T PRK14705 892 WLDEFHIDGLRVDAVAS 908 (1224)
T ss_pred HHHHhCCCcEEEeehhh
Confidence 875 8999999998653
No 70
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=62.85 E-value=8 Score=22.35 Aligned_cols=17 Identities=35% Similarity=0.569 Sum_probs=12.5
Q ss_pred HHHHHHhCCccEEEecC
Q 025445 64 LVKDFIYNGVDGIWNDM 80 (252)
Q Consensus 64 ~~~~~~~~Gvdg~w~D~ 80 (252)
..+.+++.||||+..|.
T Consensus 12 ~~~~~l~~GVDgI~Td~ 28 (30)
T PF13653_consen 12 SWRELLDLGVDGIMTDY 28 (30)
T ss_dssp HHHHHHHHT-SEEEES-
T ss_pred HHHHHHHcCCCEeeCCC
Confidence 34778899999999884
No 71
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=59.53 E-value=17 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=27.3
Q ss_pred CCCCCCChhHHHHHHHHHHHHH-hCCccEEEecCC
Q 025445 48 VFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 81 (252)
Q Consensus 48 ~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 81 (252)
-..+...|..+.||.+.+.+.+ ..++||+.+|..
T Consensus 42 ~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn~ 76 (79)
T PF14885_consen 42 QMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADND 76 (79)
T ss_pred eeccCCcchHHHHHHHHHHHHHhcCccceeeeecc
Confidence 3456666999999999997755 589999999963
No 72
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=56.88 E-value=14 Score=35.33 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=27.6
Q ss_pred CCCChhHHHHHHHHHHHHHh-CCccEEEecCCC
Q 025445 51 DYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE 82 (252)
Q Consensus 51 Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~E 82 (252)
|..||++++...+.++.+++ .|||||=+|...
T Consensus 204 n~~np~V~~~l~~~~~~w~~~~giDGfRlDavk 236 (479)
T PRK09441 204 DFRHPEVREELKYWAKWYMETTGFDGFRLDAVK 236 (479)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhc
Confidence 34689999999998888887 999999999764
No 73
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=56.62 E-value=38 Score=35.20 Aligned_cols=80 Identities=15% Similarity=0.168 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCCC--------Cc-ccee--ecCCCcccCC-CcCCCCCCChhHHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYMD--------GF-RCFT--FDKAWEVWPG-PCVFPDYTQSKVRSWWGSLVKD 67 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~~--------~~-~~f~--~d~~w~~w~g-~~~~~Dft~p~a~~ww~~~~~~ 67 (252)
+|++++|++++++||- +|+++....-.. +. ..|. .+..-..-.+ .+.-.+..||.++++..+-++.
T Consensus 404 ~Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~~ 483 (898)
T TIGR02103 404 KEFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLVV 483 (898)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHHH
Confidence 5899999999999985 577765543211 00 0010 0110000000 1222466789999999999999
Q ss_pred HH-hCCccEEEecCC
Q 025445 68 FI-YNGVDGIWNDMN 81 (252)
Q Consensus 68 ~~-~~Gvdg~w~D~~ 81 (252)
.+ ++|||||=+|.-
T Consensus 484 W~~ey~VDGFRfDlm 498 (898)
T TIGR02103 484 WAKDYKVDGFRFDLM 498 (898)
T ss_pred HHHHcCCCEEEEech
Confidence 77 599999999965
No 74
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=49.44 E-value=22 Score=33.37 Aligned_cols=33 Identities=27% Similarity=0.370 Sum_probs=29.8
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCccEEEecCCC
Q 025445 50 PDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNE 82 (252)
Q Consensus 50 ~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E 82 (252)
+++.||+++++..+.++..++.|||||=+|.-.
T Consensus 169 ln~~n~~v~~~~~~~~~~W~~~gvDGfRlDa~~ 201 (505)
T COG0366 169 LNWENPEVREELLDVVKFWLDKGVDGFRLDAAK 201 (505)
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCCCeEEeccHh
Confidence 689999999999998899999999999999753
No 75
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=40.70 E-value=59 Score=24.12 Aligned_cols=47 Identities=13% Similarity=0.243 Sum_probs=38.2
Q ss_pred CChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHHhhhhc
Q 025445 197 ATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAFFWFKL 251 (252)
Q Consensus 197 ~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~~~~~~ 251 (252)
.++++..+|.++|.+-|.-. ..+-|.|++.....+|++.+|-+=|.+
T Consensus 19 i~~~~l~eLve~GlIep~~~--------~~~~~~F~~~~l~r~~~a~rL~~dl~i 65 (101)
T PRK10265 19 VSEEELNEIVGLGVIEPREI--------QETTWVFDDHAAIVVQRAVRLRHELAL 65 (101)
T ss_pred cCHHHHHHHHHCCCeecCCC--------CcccceECHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999998432 246788988899999999999876654
No 76
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.01 E-value=29 Score=32.73 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=32.2
Q ss_pred CcCCCCCCChhHHHHHHHHHHHHH-hCCccEEEecCC
Q 025445 46 PCVFPDYTQSKVRSWWGSLVKDFI-YNGVDGIWNDMN 81 (252)
Q Consensus 46 ~~~~~Dft~p~a~~ww~~~~~~~~-~~Gvdg~w~D~~ 81 (252)
...++|=.+|++++|..+.+-+++ ++.|||+-+|--
T Consensus 172 ~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd~ 208 (418)
T COG1649 172 KRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDDY 208 (418)
T ss_pred eeeEeCCCChHHHHHHHHHHHHHHhCCCCCceeccee
Confidence 468999999999999999999987 599999999953
No 77
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=40.01 E-value=20 Score=30.17 Aligned_cols=17 Identities=41% Similarity=0.870 Sum_probs=15.5
Q ss_pred HHHHHHHHHHcCCCccE
Q 025445 4 IREFVRTFREKGIPCDV 20 (252)
Q Consensus 4 v~~~~~~~~~~~iP~d~ 20 (252)
|+++++.++++|||.++
T Consensus 117 vkamv~~~~~~GiPA~v 133 (207)
T COG2039 117 VKAMVQAIREAGIPASV 133 (207)
T ss_pred HHHHHHHHHHcCCChhh
Confidence 68999999999999986
No 78
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=38.53 E-value=33 Score=18.70 Aligned_cols=19 Identities=32% Similarity=0.363 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHcCCCccE
Q 025445 2 ILIREFVRTFREKGIPCDV 20 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~ 20 (252)
++..++.+++++.|++.|+
T Consensus 17 ~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 17 EEALELFKEMLERGIEPDV 35 (35)
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 6788899999999998763
No 79
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=37.70 E-value=52 Score=32.31 Aligned_cols=111 Identities=20% Similarity=0.236 Sum_probs=55.4
Q ss_pred cCCCcCCCCCCChhHHHHHHHHHHHHHh-CCccEEEecCCC-CcccCCCCCCCCCCCccCCCCCCCCccccchhhhhhHH
Q 025445 43 WPGPCVFPDYTQSKVRSWWGSLVKDFIY-NGVDGIWNDMNE-PAVFKSVTKTMPESNIHRGDDEIGGCQNHSYYHNVYGM 120 (252)
Q Consensus 43 w~g~~~~~Dft~p~a~~ww~~~~~~~~~-~Gvdg~w~D~~E-~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~hn~y~~ 120 (252)
|+..-.+.|-.||+=++++.+++++.++ .|||||-+|.-- +.. .+.- .|... ..+...|+.
T Consensus 228 w~s~lyl~dP~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~------------~~d~---~G~~i--~~l~~~y~~ 290 (559)
T PF13199_consen 228 WPSDLYLMDPGNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGT------------VYDY---DGNKI--YDLSDGYAS 290 (559)
T ss_dssp E--EEEEB-TT-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEE------------EGGT---T---G--GECHHHHHH
T ss_pred cccceEEecCCCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCc------------cccC---CCCCc--hhhHHHHHH
Confidence 4444578888888888888888888775 999999999732 111 1100 01111 034455543
Q ss_pred HHHHHHHHHHHhhcCCCCcEEEeccccCCC--------CC--cceeecCCCCCChhHHHHHHHHHHHh
Q 025445 121 LMARSTYEGMKLADKDKRPFVLTRAGFIGS--------QR--YAATWTGDNVSNWEHLHMSISMVLQL 178 (252)
Q Consensus 121 ~~~~a~~~~~~~~~~~~r~~~~sRs~~~g~--------~r--~~~~W~GD~~ssW~~L~~~I~~~l~~ 178 (252)
+. +++++..+++ ++++---+--|+ +- |.=+| +...+...|+..|...=..
T Consensus 291 Fi-----~~~K~~~~~k-~lv~N~V~~~g~~~~a~~~~~d~lY~EvW--~~~~~Y~~Lk~~i~~~r~~ 350 (559)
T PF13199_consen 291 FI-----NAMKEALPDK-YLVFNAVSGYGIEQIAKTSKVDFLYNEVW--DDYDTYGDLKRIIDQNRKY 350 (559)
T ss_dssp HH-----HHHHHHSTTS-EEEEB-GGGTTHHHHTT-S--SSEEEE----SBS-BHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHhCCCC-ceeeeccCccchhhhhcccccceeeeecc--cccccHHHHHHHHHHHhhh
Confidence 22 2333344433 455543322222 22 33478 7777888999988877666
No 80
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=36.62 E-value=44 Score=32.63 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=31.3
Q ss_pred cCCCCCCChhHHHHHHHHHHH-HHhCCccEEEecCCCC
Q 025445 47 CVFPDYTQSKVRSWWGSLVKD-FIYNGVDGIWNDMNEP 83 (252)
Q Consensus 47 ~~~~Dft~p~a~~ww~~~~~~-~~~~Gvdg~w~D~~E~ 83 (252)
..=+|+.||++++-+++.++. ..+.||||+-+|....
T Consensus 180 ~pDln~~n~~V~~~~~~~l~~~~~~~gvdGfRiD~v~~ 217 (545)
T KOG0471|consen 180 QPDLNYENPDVRKAIKEWLRDFWLEKGVDGFRIDAVKG 217 (545)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhhcCCCeEEEEcccc
Confidence 355778899999999999995 4579999999998764
No 81
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=36.01 E-value=32 Score=31.06 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHcCCCccEEEE
Q 025445 2 ILIREFVRTFREKGIPCDVIWM 23 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~ 23 (252)
+.++++++.++++|+|+|+|-+
T Consensus 188 ~~~~~lv~~l~~~gvpIdgIG~ 209 (320)
T PF00331_consen 188 DAYLNLVKDLKARGVPIDGIGL 209 (320)
T ss_dssp HHHHHHHHHHHHTTHCS-EEEE
T ss_pred HHHHHHHHHHHhCCCccceech
Confidence 4688999999999999999975
No 82
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=33.64 E-value=1.2e+02 Score=30.53 Aligned_cols=76 Identities=9% Similarity=0.010 Sum_probs=49.3
Q ss_pred HHHHHHHHcCCCccEEEEcCCCCCC--ccceeecCC-------------CcccCCCcCCCCCCChh--HHHHHH-HHHHH
Q 025445 6 EFVRTFREKGIPCDVIWMDIDYMDG--FRCFTFDKA-------------WEVWPGPCVFPDYTQSK--VRSWWG-SLVKD 67 (252)
Q Consensus 6 ~~~~~~~~~~iP~d~i~~D~~~~~~--~~~f~~d~~-------------w~~w~g~~~~~Dft~p~--a~~ww~-~~~~~ 67 (252)
+.++.++++|+=.+...=.+.|.-+ ..+++||.+ |..+....--++|.||+ +++-.. +.++.
T Consensus 203 ~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~ 282 (688)
T TIGR02455 203 AQCDELKAKHYIVGQLQRVIFFEPGIKDTDWSATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHA 282 (688)
T ss_pred HHHHHHhhccCcccccccceecCCCcccCCceecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHH
Confidence 4567788888533322211223322 235677733 24444445667899999 888777 78888
Q ss_pred HHhCCccEEEecCC
Q 025445 68 FIYNGVDGIWNDMN 81 (252)
Q Consensus 68 ~~~~Gvdg~w~D~~ 81 (252)
+.+.|++|+-+|.+
T Consensus 283 w~~lG~~GfRLDAv 296 (688)
T TIGR02455 283 IDCLGARGLRLDAN 296 (688)
T ss_pred HHHhccccceeccc
Confidence 88999999999985
No 83
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=33.54 E-value=1.5e+02 Score=29.67 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=48.9
Q ss_pred ChHHHHHHHHHHHcCCCccEEEEcCCCCC----CccceeecCC-----------C-cccCCCcCCCCCC-ChhHHHHHHH
Q 025445 1 MILIREFVRTFREKGIPCDVIWMDIDYMD----GFRCFTFDKA-----------W-EVWPGPCVFPDYT-QSKVRSWWGS 63 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i~~D~~~~~----~~~~f~~d~~-----------w-~~w~g~~~~~Dft-~p~a~~ww~~ 63 (252)
.|+++++|++.+++||- |++|.=+-. +..--.||.. + .-| +..+++. ++++|++.-+
T Consensus 213 Pedfk~fVD~aH~~GIg---ViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~W---g~~i~~~gr~EVR~Fll~ 286 (628)
T COG0296 213 PEDFKALVDAAHQAGIG---VILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDW---GTAIFNYGRNEVRNFLLA 286 (628)
T ss_pred HHHHHHHHHHHHHcCCE---EEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCc---ccchhccCcHHHHHHHHH
Confidence 37899999999999994 455532210 1111111111 0 011 2444444 9999999777
Q ss_pred HHHHHH-hCCccEEEecCCCCcc
Q 025445 64 LVKDFI-YNGVDGIWNDMNEPAV 85 (252)
Q Consensus 64 ~~~~~~-~~Gvdg~w~D~~E~~~ 85 (252)
-....+ +..|||+-+|...-..
T Consensus 287 nal~Wl~~yHiDGlRvDAV~sml 309 (628)
T COG0296 287 NALYWLEEYHIDGLRVDAVASML 309 (628)
T ss_pred HHHHHHHHhCCcceeeehhhhhh
Confidence 766655 6999999999876433
No 84
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=31.78 E-value=1.3e+02 Score=30.12 Aligned_cols=40 Identities=23% Similarity=0.160 Sum_probs=34.6
Q ss_pred cCCCCCCChhHHHHHHHHHHHHHhCCccEEEecCCCCccc
Q 025445 47 CVFPDYTQSKVRSWWGSLVKDFIYNGVDGIWNDMNEPAVF 86 (252)
Q Consensus 47 ~~~~Dft~p~a~~ww~~~~~~~~~~Gvdg~w~D~~E~~~~ 86 (252)
+--+|..+|-+|+-.-++.+.-++.|+||+-+|.+.-..|
T Consensus 356 GQdlnhq~P~VRAILLEmQRRK~n~GaDGIRVDGgQDFk~ 395 (811)
T PF14872_consen 356 GQDLNHQNPVVRAILLEMQRRKINTGADGIRVDGGQDFKF 395 (811)
T ss_pred cccccccChHHHHHHHHHHHhhcccCCceeEeccccccee
Confidence 4568999999999999998887889999999999987544
No 85
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=27.78 E-value=66 Score=26.52 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=18.6
Q ss_pred HHHHHHHHHHcCCCccEEEEcCCCCCCc
Q 025445 4 IREFVRTFREKGIPCDVIWMDIDYMDGF 31 (252)
Q Consensus 4 v~~~~~~~~~~~iP~d~i~~D~~~~~~~ 31 (252)
+...+.+....+-+.|+|.+||+|....
T Consensus 101 ~~~~l~~~~~~~~~fDiIflDPPY~~~~ 128 (183)
T PF03602_consen 101 AFKFLLKLAKKGEKFDIIFLDPPYAKGL 128 (183)
T ss_dssp HHHHHHHHHHCTS-EEEEEE--STTSCH
T ss_pred HHHHHHhhcccCCCceEEEECCCcccch
Confidence 3445556666789999999999998764
No 86
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=27.64 E-value=60 Score=28.01 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEE
Q 025445 2 ILIREFVRTFREKGIPCDVIWM 23 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~ 23 (252)
+.++++++.++++|+|+|+|-+
T Consensus 136 ~~~~~~v~~l~~~g~~iDgiGl 157 (254)
T smart00633 136 QAIYELVKKLKAKGVPIDGIGL 157 (254)
T ss_pred HHHHHHHHHHHHCCCccceeee
Confidence 3578999999999999999997
No 87
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=27.15 E-value=1.8e+02 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.281 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+..++.++=-.++||+.-.| |.+|..
T Consensus 32 ~~~k~yIDfAa~~G~eYvlv--D~GW~~ 57 (273)
T PF10566_consen 32 ETQKRYIDFAAEMGIEYVLV--DAGWYG 57 (273)
T ss_dssp HHHHHHHHHHHHTT-SEEEE--BTTCCG
T ss_pred HHHHHHHHHHHHcCCCEEEe--cccccc
Confidence 45667777778889876544 999975
No 88
>PF13041 PPR_2: PPR repeat family
Probab=25.82 E-value=59 Score=20.10 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=17.5
Q ss_pred ChHHHHHHHHHHHcCCCccEE
Q 025445 1 MILIREFVRTFREKGIPCDVI 21 (252)
Q Consensus 1 ~~~v~~~~~~~~~~~iP~d~i 21 (252)
+++..++.++++++|++.|.+
T Consensus 19 ~~~a~~l~~~M~~~g~~P~~~ 39 (50)
T PF13041_consen 19 FEEALKLFKEMKKRGIKPDSY 39 (50)
T ss_pred HHHHHHHHHHHHHcCCCCCHH
Confidence 367889999999999998753
No 89
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=25.30 E-value=71 Score=24.81 Aligned_cols=24 Identities=13% Similarity=0.241 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDI 25 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~ 25 (252)
|||..+++.+|++||.+.+++...
T Consensus 68 ~EV~pvi~aL~~~GI~vtAlHNH~ 91 (123)
T PF07485_consen 68 DEVNPVISALRKNGIEVTALHNHW 91 (123)
T ss_pred HHHHHHHHHHHHCCceEEEEeccc
Confidence 799999999999999999999664
No 90
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=23.88 E-value=73 Score=16.89 Aligned_cols=15 Identities=33% Similarity=0.403 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHcCC
Q 025445 2 ILIREFVRTFREKGI 16 (252)
Q Consensus 2 ~~v~~~~~~~~~~~i 16 (252)
++.+++.+++++.||
T Consensus 17 ~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 17 EEALEVFDEMRERGI 31 (31)
T ss_pred HHHHHHHHHHhHCcC
Confidence 678889999998886
No 91
>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]
Probab=23.79 E-value=68 Score=28.98 Aligned_cols=37 Identities=14% Similarity=0.302 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHcCCCccEEEEcCCCCCC----ccceeecCC
Q 025445 3 LIREFVRTFREKGIPCDVIWMDIDYMDG----FRCFTFDKA 39 (252)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~~D~~~~~~----~~~f~~d~~ 39 (252)
+|..+.+-.+.+..=.|+|++|+.|.++ .+.|..+.+
T Consensus 170 Dv~~~~qll~~H~llpdlIIiDPPW~NKSVkRs~~Ysmlsn 210 (366)
T KOG2356|consen 170 DVKDIEQLLRAHDLLPDLIIIDPPWFNKSVKRSRTYSMLSN 210 (366)
T ss_pred cHHHHHHHhHHHhhcCCeEEeCCCCCCcccccccceecccc
Confidence 4555656566666545999999999975 245666554
No 92
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=23.15 E-value=1.9e+02 Score=24.38 Aligned_cols=70 Identities=14% Similarity=0.237 Sum_probs=40.7
Q ss_pred eeecCCCCCChhHHHHHHHHHHHhhccCCCccccCCCCCCCCCChhHHHHHHhhccccccccccCCCCCCCCCCcccChh
Q 025445 155 ATWTGDNVSNWEHLHMSISMVLQLGLSGQPFSGPDIGGFDGNATPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEE 234 (252)
Q Consensus 155 ~~W~GD~~ssW~~L~~~I~~~l~~~l~G~~~~g~DigGf~~~~~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~ 234 (252)
+-|..|......+|-..+..-.++-..--+-.+.|+ .++||+ +.|+.-.++. .-+.++++
T Consensus 11 gdw~~d~p~~l~~L~~~l~~~t~~~~~~~~~~~v~~------~~~~L~--------~yP~ly~~g~------~~~~~s~~ 70 (207)
T PF13709_consen 11 GDWNVDSPAGLRNLSRFLNQRTSLEVGPEEPQAVDL------DDDELF--------FYPFLYWPGH------GDFPLSDE 70 (207)
T ss_pred CCccccchhHHHHHHHHHHHHhCCCccCCCCcccCC------CchhHH--------hCCEEEEeCC------CCCCCCHH
Confidence 456556444444555555544444333222122222 257776 7899888753 34477888
Q ss_pred HHHHHHHHHH
Q 025445 235 VLFCSSIVII 244 (252)
Q Consensus 235 ~~~~~r~~~~ 244 (252)
..+.+|++++
T Consensus 71 e~~~Lr~Yl~ 80 (207)
T PF13709_consen 71 EIANLRRYLE 80 (207)
T ss_pred HHHHHHHHHH
Confidence 8888888875
No 93
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=23.15 E-value=1e+02 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.227 Sum_probs=37.0
Q ss_pred ChhHHHHHHhhccccccccccCCCCCCCCCCcccChhHHHHHHHHHHHH
Q 025445 198 TPRLFGRWMGIGAMFPFCRGHTESDAIDHEPWSFGEEVLFCSSIVIIAF 246 (252)
Q Consensus 198 ~~eL~~RW~Q~~~f~P~~r~h~~~~~~~~ePw~~~~~~~~~~r~~~~l~ 246 (252)
.-|+|.+|+-.|+++-++-..-..-..+..||.++..-.+++.++++-|
T Consensus 162 el~~~~pllsaG~Y~vVeDs~v~dlp~~~~p~~~g~gP~~AVe~ylr~~ 210 (237)
T COG3510 162 ELKLLAPLLSAGDYLVVEDSNVNDLPGPVLPWRFGGGPYEAVEAYLREF 210 (237)
T ss_pred HHHHhhhHhhcCceEEEecccccCCCCcccchhcCCChHHHHHHHHHhC
Confidence 3489999999999998876554433346899999877777777777654
No 94
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=22.61 E-value=96 Score=31.78 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMD 29 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~ 29 (252)
+-|.+=++.+.+-|+|..-++||.+||.
T Consensus 239 ~GV~~Gv~~l~~gG~pprfvIIDDGWQs 266 (865)
T PLN02982 239 VGVWHGVKEFAEGGVPPRFLIIDDGWQS 266 (865)
T ss_pred HHHHHHHHHHhcCCCCccEEEEecchhh
Confidence 3477889999999999999999999984
No 95
>smart00459 Sorb Sorbin homologous domain. First found in the peptide hormone sorbin and later in the ponsin/ArgBP2/vinexin family of proteins.
Probab=21.83 E-value=1.1e+02 Score=19.77 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=18.1
Q ss_pred CCCCChhHHHHHHHHHHHHHhCCcc
Q 025445 50 PDYTQSKVRSWWGSLVKDFIYNGVD 74 (252)
Q Consensus 50 ~Dft~p~a~~ww~~~~~~~~~~Gvd 74 (252)
++=+-.+..+||+.+++.+.+.+-|
T Consensus 21 ~rs~v~~~~dWYk~MfkqiHk~~~d 45 (50)
T smart00459 21 PRSSVERPKDWYRTMFKQIHRKGPD 45 (50)
T ss_pred cccCcccHHHHHHHHHHHHHccCCC
Confidence 3334456677999999999887644
No 96
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=20.92 E-value=84 Score=28.70 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHcCCCccEEEEc
Q 025445 3 LIREFVRTFREKGIPCDVIWMD 24 (252)
Q Consensus 3 ~v~~~~~~~~~~~iP~d~i~~D 24 (252)
-|+.+++.++++|.|+|.|-+-
T Consensus 205 ~~~nlI~~LkekG~pIDgiG~Q 226 (345)
T COG3693 205 YVLNLIEELKEKGAPIDGIGIQ 226 (345)
T ss_pred HHHHHHHHHHHCCCCccceeee
Confidence 5789999999999999999754
No 97
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=20.56 E-value=62 Score=27.00 Aligned_cols=26 Identities=42% Similarity=0.602 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDY 27 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~ 27 (252)
+++...-+.++++|||+|+|-.|.+.
T Consensus 30 ~~~~~~y~al~~~gi~vDvv~~~~dL 55 (207)
T PF08532_consen 30 DQVRGWYRALRELGIPVDVVSPDDDL 55 (207)
T ss_dssp HHHHHHHHHHHTTT--EEEE-TTS--
T ss_pred HHHHHHHHHHHHcCCceEEecCcCCc
Confidence 56788889999999999999987643
No 98
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=20.29 E-value=1e+02 Score=29.32 Aligned_cols=37 Identities=16% Similarity=0.312 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHcCCCccEEEEcCCCCCCccceeecCC
Q 025445 2 ILIREFVRTFREKGIPCDVIWMDIDYMDGFRCFTFDKA 39 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP~d~i~~D~~~~~~~~~f~~d~~ 39 (252)
+.+.+..++..+++.|+.+..+|+|..+.++| |+.+.
T Consensus 286 ~~L~~~~~ra~~~~~pls~~m~DID~FK~iND-t~GH~ 322 (435)
T COG3706 286 EHLADLWKRALREGRPLSLLMLDIDDFKEIND-TYGHD 322 (435)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEeccccccccc-ccCCc
Confidence 56778889999999999999999999998875 44443
No 99
>PLN02877 alpha-amylase/limit dextrinase
Probab=20.25 E-value=5.4e+02 Score=27.23 Aligned_cols=81 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHcCCC--ccEEEEcCCCC---------CCc-c-ceeecCCCcccCCC--cCCCCCCChhHHHHHHHHHH
Q 025445 2 ILIREFVRTFREKGIP--CDVIWMDIDYM---------DGF-R-CFTFDKAWEVWPGP--CVFPDYTQSKVRSWWGSLVK 66 (252)
Q Consensus 2 ~~v~~~~~~~~~~~iP--~d~i~~D~~~~---------~~~-~-~f~~d~~w~~w~g~--~~~~Dft~p~a~~ww~~~~~ 66 (252)
.|++++|++++++||- +|+++....-. ++. . .|.....+...... +.-..-.++-++++.-+-++
T Consensus 466 ~efk~mV~~lH~~GI~VImDVVyNHt~~~g~~~~~s~ld~~vP~YY~r~~~~G~~~ns~c~n~~Ase~~mvrklIlDsl~ 545 (970)
T PLN02877 466 IEFRKMVQALNRIGLRVVLDVVYNHLHSSGPFDENSVLDKIVPGYYLRRNSDGFIENSTCVNNTASEHYMVDRLIVDDLL 545 (970)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCccccCCCCcchhhcccCCCCCceEEECCCCCcccCCccCCCccCCHHHHHHHHHHHH
Confidence 4799999999999985 46665544210 010 0 11111111111111 12223346778888888888
Q ss_pred HHH-hCCccEEEecCCC
Q 025445 67 DFI-YNGVDGIWNDMNE 82 (252)
Q Consensus 67 ~~~-~~Gvdg~w~D~~E 82 (252)
..+ ++|||||-+|...
T Consensus 546 yW~~ey~VDGFRFDlmg 562 (970)
T PLN02877 546 NWAVNYKVDGFRFDLMG 562 (970)
T ss_pred HHHHHhCCCEEEEEccc
Confidence 877 5999999999864
Done!