Query 025446
Match_columns 252
No_of_seqs 276 out of 2380
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 05:55:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025446.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025446hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0234 GroS Co-chaperonin Gro 100.0 4.5E-37 9.8E-42 240.6 10.2 95 157-252 1-95 (96)
2 COG0234 GroS Co-chaperonin Gro 100.0 1.4E-35 3E-40 232.2 9.2 94 59-152 1-95 (96)
3 PRK00364 groES co-chaperonin G 100.0 2.3E-34 5.1E-39 225.9 11.0 95 157-252 1-95 (95)
4 PTZ00414 10 kDa heat shock pro 100.0 5.2E-34 1.1E-38 226.0 10.5 96 151-252 4-99 (100)
5 PTZ00414 10 kDa heat shock pro 100.0 5E-34 1.1E-38 226.1 9.5 94 55-152 6-99 (100)
6 PRK00364 groES co-chaperonin G 100.0 2.9E-33 6.3E-38 219.7 10.5 94 59-152 1-95 (95)
7 cd00320 cpn10 Chaperonin 10 Kd 100.0 5.1E-33 1.1E-37 217.4 10.1 93 158-251 1-93 (93)
8 PRK14533 groES co-chaperonin G 100.0 1.1E-32 2.4E-37 215.2 9.6 90 59-152 1-90 (91)
9 PRK14533 groES co-chaperonin G 100.0 1.6E-32 3.5E-37 214.2 10.2 90 157-252 1-90 (91)
10 cd00320 cpn10 Chaperonin 10 Kd 100.0 5.3E-32 1.2E-36 211.7 10.2 92 60-151 1-93 (93)
11 KOG1641 Mitochondrial chaperon 100.0 1.1E-31 2.3E-36 211.9 7.2 102 150-251 2-103 (104)
12 PF00166 Cpn10: Chaperonin 10 100.0 6.9E-31 1.5E-35 204.8 10.4 93 158-251 1-93 (93)
13 PF00166 Cpn10: Chaperonin 10 100.0 5.2E-30 1.1E-34 199.9 10.1 92 60-151 1-93 (93)
14 KOG1641 Mitochondrial chaperon 99.9 2.3E-28 5E-33 193.0 6.8 97 55-151 5-103 (104)
15 KOG1197 Predicted quinone oxid 80.8 1.5 3.2E-05 41.4 3.0 43 76-126 51-96 (336)
16 PF08240 ADH_N: Alcohol dehydr 77.4 2.6 5.6E-05 32.5 3.1 25 192-225 39-63 (109)
17 KOG1197 Predicted quinone oxid 75.1 2.5 5.4E-05 39.9 2.8 42 178-228 55-99 (336)
18 PF08240 ADH_N: Alcohol dehydr 74.9 2.6 5.6E-05 32.5 2.5 26 94-127 39-64 (109)
19 KOG0022 Alcohol dehydrogenase, 73.0 11 0.00024 36.5 6.5 143 61-228 28-203 (375)
20 COG1062 AdhC Zn-dependent alco 72.6 3 6.6E-05 40.4 2.8 23 192-223 63-85 (366)
21 COG1062 AdhC Zn-dependent alco 70.9 10 0.00022 36.9 5.8 105 62-175 24-159 (366)
22 COG4384 Mu-like prophage prote 68.5 14 0.00031 33.0 5.8 32 190-227 77-108 (203)
23 COG1329 Transcriptional regula 64.6 5.1 0.00011 34.9 2.3 52 114-165 3-66 (166)
24 COG4384 Mu-like prophage prote 63.7 17 0.00036 32.5 5.3 31 112-142 92-129 (203)
25 KOG0025 Zn2+-binding dehydroge 63.4 10 0.00022 36.3 4.2 71 62-142 45-129 (354)
26 TIGR03366 HpnZ_proposed putati 58.8 8.6 0.00019 34.3 2.8 30 94-125 6-35 (280)
27 KOG0022 Alcohol dehydrogenase, 58.6 17 0.00036 35.3 4.7 22 192-222 69-90 (375)
28 COG0604 Qor NADPH:quinone redu 56.7 14 0.00031 34.6 3.9 72 161-247 25-108 (326)
29 KOG0025 Zn2+-binding dehydroge 56.5 21 0.00045 34.3 5.0 55 161-225 46-109 (354)
30 PF06890 Phage_Mu_Gp45: Bacter 56.3 40 0.00087 29.1 6.3 40 82-128 48-87 (162)
31 TIGR03366 HpnZ_proposed putati 55.1 16 0.00034 32.6 3.8 30 192-225 6-36 (280)
32 COG1064 AdhP Zn-dependent alco 54.2 25 0.00053 33.9 5.2 24 93-124 64-87 (339)
33 PF02559 CarD_CdnL_TRCF: CarD- 53.3 17 0.00036 27.9 3.2 14 116-129 2-15 (98)
34 COG0604 Qor NADPH:quinone redu 53.0 18 0.00039 33.9 4.0 56 63-126 25-89 (326)
35 TIGR01202 bchC 2-desacetyl-2-h 51.2 16 0.00035 33.1 3.4 23 94-125 66-88 (308)
36 PF10794 DUF2606: Protein of u 48.9 67 0.0014 26.9 6.2 65 165-232 43-112 (131)
37 PF06890 Phage_Mu_Gp45: Bacter 45.3 41 0.0009 29.1 4.7 46 179-233 47-92 (162)
38 TIGR02819 fdhA_non_GSH formald 44.0 23 0.00049 33.8 3.3 24 192-224 69-92 (393)
39 cd08230 glucose_DH Glucose deh 42.6 23 0.0005 32.5 3.0 23 192-224 65-87 (355)
40 TIGR02819 fdhA_non_GSH formald 42.5 22 0.00048 33.9 2.9 24 94-125 69-92 (393)
41 TIGR02822 adh_fam_2 zinc-bindi 42.5 48 0.001 30.4 5.1 23 192-223 64-86 (329)
42 smart00696 DM9 Repeats found i 41.7 39 0.00084 25.1 3.5 55 183-242 12-68 (71)
43 COG1064 AdhP Zn-dependent alco 38.0 27 0.00059 33.6 2.7 23 192-223 65-87 (339)
44 PLN02178 cinnamyl-alcohol dehy 37.3 51 0.0011 31.1 4.5 23 192-223 68-90 (375)
45 PF10844 DUF2577: Protein of u 36.9 41 0.00089 26.4 3.2 23 214-243 76-98 (100)
46 TIGR01202 bchC 2-desacetyl-2-h 36.4 35 0.00075 31.0 3.1 23 192-224 66-88 (308)
47 PF01079 Hint: Hint module; I 35.7 3.3E+02 0.0071 24.5 9.6 23 112-135 27-50 (217)
48 cd08237 ribitol-5-phosphate_DH 35.4 62 0.0013 29.8 4.6 22 94-125 66-87 (341)
49 COG3450 Predicted enzyme of th 34.9 90 0.0019 25.7 4.9 38 105-142 75-114 (116)
50 PLN02586 probable cinnamyl alc 34.0 40 0.00087 31.4 3.1 23 192-223 74-96 (360)
51 TIGR03214 ura-cupin putative a 33.5 47 0.001 30.3 3.4 49 193-244 202-253 (260)
52 cd05279 Zn_ADH1 Liver alcohol 33.5 76 0.0017 29.4 4.9 24 94-125 61-84 (365)
53 cd08230 glucose_DH Glucose deh 33.2 34 0.00074 31.4 2.5 23 94-125 65-87 (355)
54 PLN02586 probable cinnamyl alc 32.3 38 0.00081 31.6 2.7 23 94-124 74-96 (360)
55 cd08281 liver_ADH_like1 Zinc-d 32.1 45 0.00098 30.9 3.2 23 192-223 69-91 (371)
56 cd08281 liver_ADH_like1 Zinc-d 32.1 38 0.00082 31.5 2.6 23 94-124 69-91 (371)
57 PRK10309 galactitol-1-phosphat 31.5 46 0.001 30.3 3.1 25 191-224 60-84 (347)
58 COG1465 Predicted alternative 31.0 1.3E+02 0.0028 29.1 5.9 72 155-229 203-295 (376)
59 TIGR02227 sigpep_I_bact signal 30.7 2.6E+02 0.0057 23.3 7.3 49 151-199 25-77 (163)
60 PF08140 Cuticle_1: Crustacean 30.5 60 0.0013 22.0 2.7 25 80-104 2-28 (40)
61 PRK10309 galactitol-1-phosphat 30.1 40 0.00088 30.7 2.4 25 93-125 60-84 (347)
62 cd08269 Zn_ADH9 Alcohol dehydr 30.1 89 0.0019 27.4 4.5 27 94-128 59-85 (312)
63 TIGR02822 adh_fam_2 zinc-bindi 29.6 45 0.00098 30.6 2.7 23 94-124 64-86 (329)
64 smart00696 DM9 Repeats found i 28.8 1.3E+02 0.0028 22.3 4.5 55 85-142 12-68 (71)
65 cd08293 PTGR2 Prostaglandin re 28.6 57 0.0012 29.4 3.1 24 192-224 76-99 (345)
66 cd08301 alcohol_DH_plants Plan 28.5 52 0.0011 30.4 2.9 24 192-224 64-87 (369)
67 COG1726 NqrA Na+-transporting 28.4 94 0.002 30.8 4.6 92 122-231 19-110 (447)
68 PLN02827 Alcohol dehydrogenase 28.2 53 0.0012 30.8 3.0 24 192-224 71-94 (378)
69 cd08238 sorbose_phosphate_red 28.2 47 0.001 31.5 2.6 25 94-125 70-94 (410)
70 TIGR00739 yajC preprotein tran 28.2 90 0.002 23.9 3.7 24 114-137 36-60 (84)
71 PF11901 DUF3421: Protein of u 28.1 2.7E+02 0.0058 22.4 6.6 110 95-233 7-118 (119)
72 cd08293 PTGR2 Prostaglandin re 27.9 49 0.0011 29.9 2.6 24 94-125 76-99 (345)
73 PLN02178 cinnamyl-alcohol dehy 27.8 49 0.0011 31.2 2.6 23 94-124 68-90 (375)
74 cd08238 sorbose_phosphate_red 27.5 62 0.0013 30.7 3.3 25 192-224 70-94 (410)
75 cd08301 alcohol_DH_plants Plan 27.5 47 0.001 30.7 2.4 23 94-124 64-86 (369)
76 PF09871 DUF2098: Uncharacteri 26.8 1.1E+02 0.0025 24.0 4.1 35 214-248 2-40 (91)
77 PLN02827 Alcohol dehydrogenase 26.1 52 0.0011 30.9 2.5 24 94-125 71-94 (378)
78 cd08269 Zn_ADH9 Alcohol dehydr 26.1 1.4E+02 0.003 26.2 5.0 26 192-226 59-84 (312)
79 PLN02740 Alcohol dehydrogenase 26.0 63 0.0014 30.2 3.0 24 192-224 73-96 (381)
80 cd08239 THR_DH_like L-threonin 26.0 81 0.0018 28.5 3.6 25 192-225 62-86 (339)
81 cd08300 alcohol_DH_class_III c 25.9 66 0.0014 29.8 3.1 24 192-224 64-87 (368)
82 cd08300 alcohol_DH_class_III c 25.8 57 0.0012 30.2 2.7 24 94-125 64-87 (368)
83 cd08239 THR_DH_like L-threonin 25.8 58 0.0013 29.4 2.7 24 94-125 62-85 (339)
84 KOG0024 Sorbitol dehydrogenase 25.4 29 0.00062 33.7 0.6 53 65-125 29-92 (354)
85 TIGR02818 adh_III_F_hyde S-(hy 25.3 69 0.0015 29.8 3.1 24 192-224 63-86 (368)
86 TIGR03451 mycoS_dep_FDH mycoth 25.2 69 0.0015 29.5 3.1 23 192-223 62-84 (358)
87 TIGR02817 adh_fam_1 zinc-bindi 24.8 62 0.0013 28.9 2.6 25 93-125 65-89 (336)
88 PLN02514 cinnamyl-alcohol dehy 24.8 71 0.0015 29.6 3.1 23 192-223 71-93 (357)
89 cd08254 hydroxyacyl_CoA_DH 6-h 24.6 1.6E+02 0.0035 26.1 5.2 23 192-223 64-86 (338)
90 TIGR02818 adh_III_F_hyde S-(hy 24.5 63 0.0014 30.1 2.7 24 94-125 63-86 (368)
91 PLN02740 Alcohol dehydrogenase 24.3 58 0.0013 30.4 2.4 24 94-125 73-96 (381)
92 TIGR03451 mycoS_dep_FDH mycoth 24.2 63 0.0014 29.7 2.6 23 94-124 62-84 (358)
93 PRK10083 putative oxidoreducta 23.8 87 0.0019 28.1 3.4 23 192-223 61-83 (339)
94 PLN02514 cinnamyl-alcohol dehy 23.7 66 0.0014 29.8 2.7 23 94-124 71-93 (357)
95 PRK10083 putative oxidoreducta 23.6 73 0.0016 28.6 2.9 23 94-124 61-83 (339)
96 cd08233 butanediol_DH_like (2R 23.4 81 0.0018 28.7 3.1 23 192-223 72-94 (351)
97 TIGR02817 adh_fam_1 zinc-bindi 23.4 84 0.0018 28.1 3.2 25 191-224 65-89 (336)
98 cd08277 liver_alcohol_DH_like 23.3 63 0.0014 29.9 2.4 24 94-125 63-86 (365)
99 cd08260 Zn_ADH6 Alcohol dehydr 23.2 80 0.0017 28.5 3.1 24 93-124 61-84 (345)
100 cd08277 liver_alcohol_DH_like 23.1 77 0.0017 29.3 3.0 24 192-224 63-86 (365)
101 PF01079 Hint: Hint module; I 22.7 1.2E+02 0.0027 27.2 4.1 25 205-229 21-46 (217)
102 cd08264 Zn_ADH_like2 Alcohol d 22.5 86 0.0019 27.9 3.1 25 191-224 61-85 (325)
103 cd08260 Zn_ADH6 Alcohol dehydr 22.1 1.1E+02 0.0023 27.7 3.6 24 191-223 61-84 (345)
104 cd08264 Zn_ADH_like2 Alcohol d 22.0 77 0.0017 28.2 2.7 24 94-125 62-85 (325)
105 TIGR00692 tdh L-threonine 3-de 21.8 88 0.0019 28.3 3.0 25 191-224 62-86 (340)
106 cd08255 2-desacetyl-2-hydroxye 21.6 1.1E+02 0.0024 26.5 3.6 25 93-125 27-51 (277)
107 cd08233 butanediol_DH_like (2R 21.2 79 0.0017 28.8 2.6 23 94-124 72-94 (351)
108 TIGR00692 tdh L-threonine 3-de 21.1 76 0.0016 28.7 2.5 24 94-125 63-86 (340)
109 cd00148 PROF Profilin binds ac 20.9 3.5E+02 0.0076 21.8 6.1 43 132-202 62-104 (127)
110 cd08287 FDH_like_ADH3 formalde 20.6 78 0.0017 28.5 2.4 24 93-124 60-83 (345)
111 cd08292 ETR_like_2 2-enoyl thi 20.6 1E+02 0.0023 27.2 3.2 26 191-225 65-90 (324)
112 cd08266 Zn_ADH_like1 Alcohol d 20.5 1.5E+02 0.0033 26.0 4.2 24 192-224 65-88 (342)
113 cd05278 FDH_like Formaldehyde 20.5 96 0.0021 27.8 3.0 23 192-223 62-84 (347)
114 cd08292 ETR_like_2 2-enoyl thi 20.3 87 0.0019 27.7 2.6 26 93-126 65-90 (324)
115 cd05278 FDH_like Formaldehyde 20.1 84 0.0018 28.2 2.5 23 94-124 62-84 (347)
No 1
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-37 Score=240.55 Aligned_cols=95 Identities=46% Similarity=0.844 Sum_probs=92.5
Q ss_pred ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025446 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236 (252)
Q Consensus 157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg 236 (252)
|+|+||+|||||++.|+|++|+|||+||++|+|||++|+|||||+|..+++|++.|++||+||+|+|++|+|+++++ ||
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~-dg 79 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKI-DG 79 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEE-CC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999995 99
Q ss_pred eEEEEEeCCceEEEeC
Q 025446 237 TNYIALRASEVMAVLS 252 (252)
Q Consensus 237 ~~y~v~re~DILAvi~ 252 (252)
++|++++++||||+++
T Consensus 80 eeylil~e~DILAiv~ 95 (96)
T COG0234 80 EEYLILSESDILAIVE 95 (96)
T ss_pred EEEEEechHHeeEEec
Confidence 9999999999999985
No 2
>COG0234 GroS Co-chaperonin GroES (HSP10) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-35 Score=232.23 Aligned_cols=94 Identities=53% Similarity=0.856 Sum_probs=90.5
Q ss_pred ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025446 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA 137 (252)
Q Consensus 59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~ 137 (252)
|+|+||||||||++.++|++|+|||+||++|++||+.|+|+|||+|..++++. +|++||+||+|+|++|+|+++++||+
T Consensus 1 m~ikPL~DRVlVk~~e~EekT~gGIvlpdsakeK~~~g~VvAVG~G~~~~~g~~~~~~VkvGD~Vlf~ky~G~evk~dge 80 (96)
T COG0234 1 MKIKPLGDRVLVKRVEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRDENGELVPLDVKVGDRVLFGKYAGTEVKIDGE 80 (96)
T ss_pred CCceecCCEEEEEEchhhccccCcEEecCccccCCcceEEEEEccceecCCCCEeccccccCCEEEECccCCcEEEECCE
Confidence 58999999999999999999999999999999999999999999999887765 79999999999999999999999999
Q ss_pred eeEEEeccceeeeec
Q 025446 138 NHLILREDDVVGILE 152 (252)
Q Consensus 138 ~~~il~e~DIlavle 152 (252)
+|++|+++||||+++
T Consensus 81 eylil~e~DILAiv~ 95 (96)
T COG0234 81 EYLILSESDILAIVE 95 (96)
T ss_pred EEEEechHHeeEEec
Confidence 999999999999986
No 3
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=2.3e-34 Score=225.87 Aligned_cols=95 Identities=47% Similarity=0.859 Sum_probs=92.1
Q ss_pred ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025446 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236 (252)
Q Consensus 157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg 236 (252)
++|+||+|||||++.+++++|+|||+||+++++|+++|+|+|||||+++++|++.|++||+||+|+|++|+|++|++ ||
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~-~~ 79 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKI-DG 79 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEE-CC
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999997 89
Q ss_pred eEEEEEeCCceEEEeC
Q 025446 237 TNYIALRASEVMAVLS 252 (252)
Q Consensus 237 ~~y~v~re~DILAvi~ 252 (252)
++|+++|++||||+++
T Consensus 80 ~~y~iv~~~DIlavi~ 95 (95)
T PRK00364 80 EEYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEEHHHEEEEeC
Confidence 9999999999999986
No 4
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=5.2e-34 Score=225.98 Aligned_cols=96 Identities=27% Similarity=0.490 Sum_probs=89.9
Q ss_pred eccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcE
Q 025446 151 LETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGND 230 (252)
Q Consensus 151 let~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~e 230 (252)
+.+..+++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|..+ .|++||+||+|+|++|+|++
T Consensus 4 ~~~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~-----~~~~Vk~GD~Vl~~~y~Gte 78 (100)
T PTZ00414 4 FTVPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD-----WTPTVKVGDTVLLPEFGGSS 78 (100)
T ss_pred ccccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc-----ccceecCCCEEEEcCCCCcE
Confidence 4566788999999999999999999999999999999999999999999999754 38899999999999999999
Q ss_pred EEecCCeEEEEEeCCceEEEeC
Q 025446 231 FKGSDGTNYIALRASEVMAVLS 252 (252)
Q Consensus 231 vk~~dg~~y~v~re~DILAvi~ 252 (252)
|++ ||++|+++|++||||+++
T Consensus 79 vk~-dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 79 VKV-EGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred EEE-CCEEEEEEEhHHEEEEec
Confidence 997 999999999999999985
No 5
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=100.00 E-value=5e-34 Score=226.09 Aligned_cols=94 Identities=30% Similarity=0.597 Sum_probs=88.6
Q ss_pred ccccccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEE
Q 025446 55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEF 134 (252)
Q Consensus 55 ~~~~~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~ 134 (252)
++++++|+||+||||||+.++|++|+|||+||+++++||++|+|+|||+|+.. .|++||+||+|+|++|+|++|++
T Consensus 6 ~~~~~~ikPL~dRVLVk~~~~e~kT~gGIiLP~sakekp~~g~VvAVG~G~~~----~~~~Vk~GD~Vl~~~y~Gtevk~ 81 (100)
T PTZ00414 6 VPALKKLQPLGQRVLVKRTLAAKQTKAGVLIPEQVAGKVNEGTVVAVAAATKD----WTPTVKVGDTVLLPEFGGSSVKV 81 (100)
T ss_pred ccccccceecCCEEEEEEcccccccccCEEcccccccCCceeEEEEECCCCcc----ccceecCCCEEEEcCCCCcEEEE
Confidence 34678899999999999999999999999999999999999999999999743 48999999999999999999999
Q ss_pred cCeeeEEEeccceeeeec
Q 025446 135 NGANHLILREDDVVGILE 152 (252)
Q Consensus 135 ~g~~~~il~e~DIlavle 152 (252)
||++|++++|+||||+++
T Consensus 82 dg~ey~i~~e~DILavi~ 99 (100)
T PTZ00414 82 EGEEFFLYNEDSLLGVLQ 99 (100)
T ss_pred CCEEEEEEEhHHEEEEec
Confidence 999999999999999986
No 6
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=100.00 E-value=2.9e-33 Score=219.68 Aligned_cols=94 Identities=53% Similarity=0.890 Sum_probs=89.7
Q ss_pred ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCe
Q 025446 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGA 137 (252)
Q Consensus 59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~ 137 (252)
++|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||+.+++|. +|++||+||+|+|++|+|++|+++|+
T Consensus 1 ~~i~Pl~drVLV~~~~~e~~T~gGI~Lp~~a~~k~~~G~VvaVG~G~~~~~G~~~~~~vk~GD~Vlf~~~~g~ev~~~~~ 80 (95)
T PRK00364 1 MNLKPLGDRVLVKRLEEEEKTAGGIVLPDSAKEKPQEGEVVAVGPGRRLDNGERVPLDVKVGDKVLFGKYAGTEVKIDGE 80 (95)
T ss_pred CcceEcCCEEEEEEcccCccccceEEcCccccCCcceEEEEEECCCeECCCCCEeecccCCCCEEEEcCCCCeEEEECCE
Confidence 46999999999999999999999999999999999999999999999877765 79999999999999999999999999
Q ss_pred eeEEEeccceeeeec
Q 025446 138 NHLILREDDVVGILE 152 (252)
Q Consensus 138 ~~~il~e~DIlavle 152 (252)
+|++++++||||+++
T Consensus 81 ~y~iv~~~DIlavi~ 95 (95)
T PRK00364 81 EYLILRESDILAIVE 95 (95)
T ss_pred EEEEEEHHHEEEEeC
Confidence 999999999999985
No 7
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=100.00 E-value=5.1e-33 Score=217.44 Aligned_cols=93 Identities=51% Similarity=0.913 Sum_probs=90.5
Q ss_pred eeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCe
Q 025446 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 237 (252)
Q Consensus 158 ~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~ 237 (252)
+|+||+|||||++.++|++|+|||+||+++++|+++|+|+|||||+.+++|++.|++|++||+|+|++|+|++|++ ||+
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~ 79 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKL-DGE 79 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEE-CCE
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999996 899
Q ss_pred EEEEEeCCceEEEe
Q 025446 238 NYIALRASEVMAVL 251 (252)
Q Consensus 238 ~y~v~re~DILAvi 251 (252)
+|+++|++||||++
T Consensus 80 ~y~i~~~~DIla~i 93 (93)
T cd00320 80 EYLILRESDILAVI 93 (93)
T ss_pred EEEEEEHHHEEEEC
Confidence 99999999999985
No 8
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.98 E-value=1.1e-32 Score=215.21 Aligned_cols=90 Identities=42% Similarity=0.734 Sum_probs=85.6
Q ss_pred ccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEEcCee
Q 025446 59 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGAN 138 (252)
Q Consensus 59 ~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~~g~~ 138 (252)
++|+||||||||++.++|++|+|||+||+++++|++.|+|+|||+|. ...|++||+||+|+|++|+|++|+++|++
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~----~~~~~~Vk~GD~Vl~~~y~g~ev~~~~~~ 76 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLD----DEEDFDIKVGDKVIFSKYAGTEIKIDDED 76 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCC----ccccccccCCCEEEEccCCCeEEEECCEE
Confidence 47999999999999999999999999999999999999999999985 24589999999999999999999999999
Q ss_pred eEEEeccceeeeec
Q 025446 139 HLILREDDVVGILE 152 (252)
Q Consensus 139 ~~il~e~DIlavle 152 (252)
|++++++||||+++
T Consensus 77 y~iv~e~DILa~i~ 90 (91)
T PRK14533 77 YIIIDVNDILAKIE 90 (91)
T ss_pred EEEEEhHhEEEEee
Confidence 99999999999986
No 9
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=99.98 E-value=1.6e-32 Score=214.23 Aligned_cols=90 Identities=34% Similarity=0.622 Sum_probs=84.9
Q ss_pred ceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCC
Q 025446 157 KDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDG 236 (252)
Q Consensus 157 ~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg 236 (252)
++|+||+|||||++.+++++|+|||+||+++++|++.|+|+|||||.. ..|++||+||+|+|++|+|++|++ ||
T Consensus 1 ~~i~Pl~DRVLVk~~~~e~~T~gGI~Lp~~a~ek~~~G~VvavG~g~~-----~~~~~Vk~GD~Vl~~~y~g~ev~~-~~ 74 (91)
T PRK14533 1 MKVIPLGERLLIKPIKEEKKTEGGIVLPDSAKEKPMKAEVVAVGKLDD-----EEDFDIKVGDKVIFSKYAGTEIKI-DD 74 (91)
T ss_pred CCceEcCCEEEEEEccccceecccEEecccccCCcceEEEEEECCCCc-----cccccccCCCEEEEccCCCeEEEE-CC
Confidence 469999999999999999999999999999999999999999999862 458999999999999999999997 89
Q ss_pred eEEEEEeCCceEEEeC
Q 025446 237 TNYIALRASEVMAVLS 252 (252)
Q Consensus 237 ~~y~v~re~DILAvi~ 252 (252)
++|+++|++||||+++
T Consensus 75 ~~y~iv~e~DILa~i~ 90 (91)
T PRK14533 75 EDYIIIDVNDILAKIE 90 (91)
T ss_pred EEEEEEEhHhEEEEee
Confidence 9999999999999985
No 10
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=99.97 E-value=5.3e-32 Score=211.68 Aligned_cols=92 Identities=53% Similarity=0.897 Sum_probs=88.1
Q ss_pred cccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCee
Q 025446 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN 138 (252)
Q Consensus 60 ~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~~ 138 (252)
+|+||+|||||++.++|++|+|||+||+++++|++.|+|+|||||+.++++. +|++||+||+|+|++|+|++++++|++
T Consensus 1 ~i~Pl~DrVLV~~~~~e~~T~~GI~Lp~~~~~k~~~g~VvAVG~g~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T cd00320 1 KIKPLGDRVLVKRIEAEEKTKGGIILPDSAKEKPQEGKVVAVGPGRRNENGERVPLSVKVGDKVLFPKYAGTEVKLDGEE 80 (93)
T ss_pred CceecCCEEEEEEccccceecceEEeCCCcCCCceEEEEEEECCCeECCCCCCccccccCCCEEEECCCCceEEEECCEE
Confidence 5899999999999999999999999999999999999999999999877765 799999999999999999999999999
Q ss_pred eEEEeccceeeee
Q 025446 139 HLILREDDVVGIL 151 (252)
Q Consensus 139 ~~il~e~DIlavl 151 (252)
|+|++++||||++
T Consensus 81 y~i~~~~DIla~i 93 (93)
T cd00320 81 YLILRESDILAVI 93 (93)
T ss_pred EEEEEHHHEEEEC
Confidence 9999999999985
No 11
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-31 Score=211.91 Aligned_cols=102 Identities=38% Similarity=0.586 Sum_probs=96.8
Q ss_pred eeccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCc
Q 025446 150 ILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGN 229 (252)
Q Consensus 150 vlet~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ 229 (252)
+.+.+.++++.|+.|||||++++++++|+|||+||+++++|.++|+|+|||||.++++|+.+|.+|++||+|||++|+|+
T Consensus 2 ~~~~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt 81 (104)
T KOG1641|consen 2 ISTSWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGT 81 (104)
T ss_pred cchhhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCc
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCeEEEEEeCCceEEEe
Q 025446 230 DFKGSDGTNYIALRASEVMAVL 251 (252)
Q Consensus 230 evk~~dg~~y~v~re~DILAvi 251 (252)
+|++.|+++|+++|++|+|+.+
T Consensus 82 ~V~l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 82 KVKLGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred EEeccCCceeEEecchhhhhhh
Confidence 9998667899999999999876
No 12
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.97 E-value=6.9e-31 Score=204.84 Aligned_cols=93 Identities=46% Similarity=0.876 Sum_probs=87.3
Q ss_pred eeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCe
Q 025446 158 DLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT 237 (252)
Q Consensus 158 ~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~ 237 (252)
+|+||+|||||++.+++++|+|||+||+++++++++|+|||||+|+.+++|+..|++|++||+|+|++|+|+++++ ||+
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~-~~~ 79 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKF-DGE 79 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEE-TTE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEE-CCE
Confidence 5899999999999999999999999999999999999999999999999999999999999999999999999997 999
Q ss_pred EEEEEeCCceEEEe
Q 025446 238 NYIALRASEVMAVL 251 (252)
Q Consensus 238 ~y~v~re~DILAvi 251 (252)
+|+++|++||||++
T Consensus 80 ~~~~~~~~dIlavi 93 (93)
T PF00166_consen 80 KYLIVREDDILAVI 93 (93)
T ss_dssp EEEEEEGGGEEEEE
T ss_pred EEEEEEHHHeEEEC
Confidence 99999999999986
No 13
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=99.96 E-value=5.2e-30 Score=199.90 Aligned_cols=92 Identities=51% Similarity=0.875 Sum_probs=85.0
Q ss_pred cccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEEEcCee
Q 025446 60 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGAN 138 (252)
Q Consensus 60 ~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~~~g~~ 138 (252)
+|+||+|||||++.+++++|+|||+||++++++++.|+|+|||+|+...++. +|++|++||+|+|++|+|+++++||++
T Consensus 1 ki~Pl~drVLV~~~~~e~~T~~GiiLp~~~~~~~~~G~VvaVG~G~~~~~g~~~~~~vk~GD~Vl~~~~~g~~v~~~~~~ 80 (93)
T PF00166_consen 1 KIKPLGDRVLVKKIEAEEKTASGIILPESAKEKPNQGKVVAVGPGRYNENGEEVPMDVKVGDKVLFPKYAGTEVKFDGEK 80 (93)
T ss_dssp EEEESTTEEEEEECSCTCTCTTSCCE-CCSSSSEEEEEEEEE-SEEETTTSSEEETSS-TTSEEEEETTTSEEEEETTEE
T ss_pred CceecCCEEEEEEccccceecceEEeccccccccceeEEEEcCCccccCCCcEeeeeeeeccEEeccccCceEEEECCEE
Confidence 5899999999999999999999999999999999999999999999987765 799999999999999999999999999
Q ss_pred eEEEeccceeeee
Q 025446 139 HLILREDDVVGIL 151 (252)
Q Consensus 139 ~~il~e~DIlavl 151 (252)
|++++++||||++
T Consensus 81 ~~~~~~~dIlavi 93 (93)
T PF00166_consen 81 YLIVREDDILAVI 93 (93)
T ss_dssp EEEEEGGGEEEEE
T ss_pred EEEEEHHHeEEEC
Confidence 9999999999985
No 14
>KOG1641 consensus Mitochondrial chaperonin [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.3e-28 Score=193.00 Aligned_cols=97 Identities=33% Similarity=0.508 Sum_probs=89.5
Q ss_pred ccccccccccCCeEEEEecccccccceeEEecCCCCCCCcceeEEEecCceeeCCCc-eeeeccCCcEEEeecCCceEEE
Q 025446 55 APKYTSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELE 133 (252)
Q Consensus 55 ~~~~~~lkPLgDRVLVk~~~~e~kT~gGI~LP~sa~~k~~~G~VVAVG~G~~~~~~~-vp~~VkvGD~Vl~~ky~G~ev~ 133 (252)
...++++.|+.|||||++.+++++|+|||+||+++++|+++|+|+|||||.++..+. +|.+||+||+|+|++|+|++|+
T Consensus 5 ~~~~kk~vPl~DRVLVqr~~a~~KT~gGilLPEks~~K~~~g~VvavGpG~~~~~G~~v~~~Vk~Gd~VLlpeygGt~V~ 84 (104)
T KOG1641|consen 5 SWEIKKVVPLLDRVLVQRIEAPTKTAGGILLPEKSVGKLLQGTVVAVGPGSRDKGGEIVPVSVKVGDRVLLPEYGGTKVK 84 (104)
T ss_pred hhhhhhhccccceeeeeeeeccccccceeEeccccccccceEEEEEEcCccccCCCCCcCccccCCCEEEeeccCCcEEe
Confidence 346789999999999999999999999999999999999999999999999887665 7999999999999999999999
Q ss_pred EcC-eeeEEEeccceeeee
Q 025446 134 FNG-ANHLILREDDVVGIL 151 (252)
Q Consensus 134 ~~g-~~~~il~e~DIlavl 151 (252)
+++ ++|.+++++|+|+++
T Consensus 85 l~~~~~~~~fr~e~~l~~~ 103 (104)
T KOG1641|consen 85 LGDEDEYHLFRDEDDLLAI 103 (104)
T ss_pred ccCCceeEEecchhhhhhh
Confidence 984 689999999988765
No 15
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=80.82 E-value=1.5 Score=41.42 Aligned_cols=43 Identities=35% Similarity=0.433 Sum_probs=29.9
Q ss_pred ccccceeEE-ecCCCC--CCCcceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025446 76 EEKTDGGIF-LPSAAQ--TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (252)
Q Consensus 76 e~kT~gGI~-LP~sa~--~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k 126 (252)
+..-+-||| +|+-.- -+.-.|+|+|||.|.. .-|+||+|.|-.
T Consensus 51 d~y~RkGlY~~~plPytpGmEaaGvVvAvG~gvt--------drkvGDrVayl~ 96 (336)
T KOG1197|consen 51 DLYFRKGLYDPAPLPYTPGMEAAGVVVAVGEGVT--------DRKVGDRVAYLN 96 (336)
T ss_pred HHHHhccccCCCCCCcCCCcccceEEEEecCCcc--------ccccccEEEEec
Confidence 344567888 333211 2446899999999973 469999999965
No 16
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=77.40 E-value=2.6 Score=32.54 Aligned_cols=25 Identities=40% Similarity=0.735 Sum_probs=19.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 225 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 225 (252)
..|+|+++|++.. .+++||+|...-
T Consensus 39 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 63 (109)
T PF08240_consen 39 GVGVVVAVGPGVT---------DFKVGDRVVVSP 63 (109)
T ss_dssp EEEEEEEESTTTT---------SSGTT-EEEEES
T ss_pred eeeeeeeeccccc---------cccccceeeeec
Confidence 5899999999764 489999999844
No 17
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=75.13 E-value=2.5 Score=39.91 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=28.7
Q ss_pred cceEE-eeccc--ccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCC
Q 025446 178 AGGLL-LTEAS--KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 228 (252)
Q Consensus 178 ~gGI~-Lp~sa--kek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG 228 (252)
..||| +++-. --+.-.|+|+|||.|.. +.++||+|.|-.-.|
T Consensus 55 RkGlY~~~plPytpGmEaaGvVvAvG~gvt---------drkvGDrVayl~~~g 99 (336)
T KOG1197|consen 55 RKGLYDPAPLPYTPGMEAAGVVVAVGEGVT---------DRKVGDRVAYLNPFG 99 (336)
T ss_pred hccccCCCCCCcCCCcccceEEEEecCCcc---------ccccccEEEEeccch
Confidence 45777 32211 12446899999999975 469999999866444
No 18
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=74.90 E-value=2.6 Score=32.52 Aligned_cols=26 Identities=42% Similarity=0.546 Sum_probs=20.2
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEeecC
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKY 127 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky 127 (252)
..|+|+++|++. ..+++||+|+..-+
T Consensus 39 ~~G~V~~vG~~v--------~~~~~Gd~V~~~~~ 64 (109)
T PF08240_consen 39 GVGVVVAVGPGV--------TDFKVGDRVVVSPN 64 (109)
T ss_dssp EEEEEEEESTTT--------TSSGTT-EEEEESE
T ss_pred eeeeeeeecccc--------ccccccceeeeecc
Confidence 479999999985 24899999998543
No 19
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.03 E-value=11 Score=36.54 Aligned_cols=143 Identities=22% Similarity=0.337 Sum_probs=83.1
Q ss_pred ccccCCeEEEEeccc-----ccccceeEEecCCCCC----CCcceeEEEecCceeeCCCceeeeccCCcEEE--------
Q 025446 61 IKPLGDRVLVKIKTV-----EEKTDGGIFLPSAAQT----KPQAGEVVAVGEGKTVGKAKLDISVKPGTQVI-------- 123 (252)
Q Consensus 61 lkPLgDRVLVk~~~~-----e~kT~gGI~LP~sa~~----k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl-------- 123 (252)
-.|-...|.||..-. +..+-+|-. |+.+-. ..-.|.|.+||+|. ..+|+||+|+
T Consensus 28 ~pPka~EVRIKI~~t~vCHTD~~~~~g~~-~~~~fP~IlGHEaaGIVESvGegV--------~~vk~GD~Viplf~p~Cg 98 (375)
T KOG0022|consen 28 APPKAHEVRIKILATGVCHTDAYVWSGKD-PEGLFPVILGHEAAGIVESVGEGV--------TTVKPGDHVIPLFTPQCG 98 (375)
T ss_pred CCCCCceEEEEEEEEeeccccceeecCCC-ccccCceEecccceeEEEEecCCc--------cccCCCCEEeeccccCCC
Confidence 446677777776531 222223332 333211 12479999999997 4799999998
Q ss_pred ---------------eecCCceEE-EEcCeeeEEEeccceeeeeccCccceeeeeCCeEEEEEecccccccceEEeeccc
Q 025446 124 ---------------YSKYAGTEL-EFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEAS 187 (252)
Q Consensus 124 ---------------~~ky~G~ev-~~~g~~~~il~e~DIlavlet~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sa 187 (252)
|..+.+... -+||+.-+..+.++|+--+.+.-+....-+.|-=|+|..+..--.+.-
T Consensus 99 eCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iyHfmg~StFsEYTVv~~~~v~kId~~aPl~kvc------- 171 (375)
T KOG0022|consen 99 ECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIYHFMGTSTFSEYTVVDDISVAKIDPSAPLEKVC------- 171 (375)
T ss_pred CcccccCCCCChhhhhcccccccccccCCceeeeeCCCceEEecccccceeEEEeecceeEecCCCCChhhee-------
Confidence 222223333 347766666889999988888877777777777777765322111111
Q ss_pred ccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCC
Q 025446 188 KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAG 228 (252)
Q Consensus 188 kek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG 228 (252)
..|==++.|=|...+.. .|++|++|-..--+|
T Consensus 172 ----LLgCGvsTG~GAa~~~A-----kv~~GstvAVfGLG~ 203 (375)
T KOG0022|consen 172 ----LLGCGVSTGYGAAWNTA-----KVEPGSTVAVFGLGG 203 (375)
T ss_pred ----Eeeccccccchhhhhhc-----ccCCCCEEEEEecch
Confidence 22223444444443322 477777776554443
No 20
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=72.63 E-value=3 Score=40.37 Aligned_cols=23 Identities=43% Similarity=0.749 Sum_probs=20.2
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
--|.|.+||+|.. +||+||+|+.
T Consensus 63 gAGiVe~VG~gVt---------~vkpGDhVI~ 85 (366)
T COG1062 63 GAGIVEAVGEGVT---------SVKPGDHVIL 85 (366)
T ss_pred cccEEEEecCCcc---------ccCCCCEEEE
Confidence 4799999999985 7999999985
No 21
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=70.86 E-value=10 Score=36.91 Aligned_cols=105 Identities=29% Similarity=0.334 Sum_probs=64.3
Q ss_pred cccCCeEEEEeccc-----ccccceeEEecCCC---CCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecC--C---
Q 025446 62 KPLGDRVLVKIKTV-----EEKTDGGIFLPSAA---QTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKY--A--- 128 (252)
Q Consensus 62 kPLgDRVLVk~~~~-----e~kT~gGI~LP~sa---~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky--~--- 128 (252)
-|--|-||||..-. +.-+.+|.+ |+.- --..-.|.|.+||+|. .+||+||+|+..=- =
T Consensus 24 ~P~~gEVlVri~AtGVCHTD~~~~~G~~-p~~~P~vLGHEgAGiVe~VG~gV--------t~vkpGDhVI~~f~p~CG~C 94 (366)
T COG1062 24 PPRAGEVLVRITATGVCHTDAHTLSGDD-PEGFPAVLGHEGAGIVEAVGEGV--------TSVKPGDHVILLFTPECGQC 94 (366)
T ss_pred CCCCCeEEEEEEEeeccccchhhhcCCC-CCCCceecccccccEEEEecCCc--------cccCCCCEEEEcccCCCCCC
Confidence 37789999997532 222333322 2220 0112479999999997 58999999985321 0
Q ss_pred -----c----------eE---EEEcCeeeEEEeccceeeeeccCccceeeeeCCeEEEEEecccc
Q 025446 129 -----G----------TE---LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEE 175 (252)
Q Consensus 129 -----G----------~e---v~~~g~~~~il~e~DIlavlet~~~~~l~PL~DRVLVk~~e~e~ 175 (252)
| +. .-.||..-+.....++...+-+..+....-.+++-++|..+...
T Consensus 95 ~~C~sGk~nlC~~~~~~~~kG~m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p 159 (366)
T COG1062 95 KFCLSGKPNLCEAIRATQGKGTMPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAP 159 (366)
T ss_pred chhhCCCcccccchhhhcccccccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCC
Confidence 1 11 22356444447777788888776666666777777777765443
No 22
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=68.49 E-value=14 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=24.6
Q ss_pred CCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCC
Q 025446 190 KPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYA 227 (252)
Q Consensus 190 k~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kya 227 (252)
+.+.|.+|.+ ++|...|+-+++||+|+|.-++
T Consensus 77 ~rShgviv~~------~~~syR~~GL~aGeT~iY~~eG 108 (203)
T COG4384 77 KRSHGVIVVS------QHGSYRITGLKAGETVIYNHEG 108 (203)
T ss_pred ccceeEEEEe------cCCccccccccCCceEEEeccC
Confidence 3456666665 4667788899999999999875
No 23
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=64.63 E-value=5.1 Score=34.92 Aligned_cols=52 Identities=19% Similarity=0.395 Sum_probs=33.4
Q ss_pred eeccCCcEEEeecCCceEE------EEcC--eeeEEE--eccceeeeeccCcc--ceeeeeCCe
Q 025446 114 ISVKPGTQVIYSKYAGTEL------EFNG--ANHLIL--REDDVVGILETDEI--KDLKPLNDR 165 (252)
Q Consensus 114 ~~VkvGD~Vl~~ky~G~ev------~~~g--~~~~il--~e~DIlavlet~~~--~~l~PL~DR 165 (252)
+..|+||+|+|+-++--.| +++| .+|+++ .++|....+-++.+ -.|+|+-|+
T Consensus 3 ~~Fk~Gd~VVYP~HGvG~I~~Ieeke~~Ge~~~yyVI~f~~~dm~v~VP~~ka~~~GiR~v~~~ 66 (166)
T COG1329 3 MAFKIGDHVVYPAHGVGIIQAIEEKEIAGETLEYYVIDFPQSDMTVMVPVAKADSVGLRPVVDQ 66 (166)
T ss_pred ccccCCCEEEecCCCceeeehhhhHhhcCceeEEEEEEEcCCCcEEEeeccchhhcCChhhhhh
Confidence 5679999999999983221 3444 456654 46677777765543 356676655
No 24
>COG4384 Mu-like prophage protein gp45 [Function unknown]
Probab=63.74 E-value=17 Score=32.54 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=22.2
Q ss_pred eeeeccCCcEEEeecCC-------ceEEEEcCeeeEEE
Q 025446 112 LDISVKPGTQVIYSKYA-------GTELEFNGANHLIL 142 (252)
Q Consensus 112 vp~~VkvGD~Vl~~ky~-------G~ev~~~g~~~~il 142 (252)
.|+-++.||+++|..++ |-.|+.+-+.|.+.
T Consensus 92 R~~GL~aGeT~iY~~eG~~i~Lteg~~Ie~~ck~~~v~ 129 (203)
T COG4384 92 RITGLKAGETVIYNHEGAKIVLTEGGIIEADCKTLTVN 129 (203)
T ss_pred ccccccCCceEEEeccCcEEEEccCcEEEEeccEEEEe
Confidence 47889999999999987 44455555555533
No 25
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=63.43 E-value=10 Score=36.35 Aligned_cols=71 Identities=34% Similarity=0.439 Sum_probs=40.3
Q ss_pred cccCCeEEEEeccccc-----ccceeEE-----ecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCC-ce
Q 025446 62 KPLGDRVLVKIKTVEE-----KTDGGIF-----LPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA-GT 130 (252)
Q Consensus 62 kPLgDRVLVk~~~~e~-----kT~gGI~-----LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~-G~ 130 (252)
.|..| |+||-..+.- .+--|.| ||. .--....|+|++||.+. ..+|+||+|+-..-+ |+
T Consensus 45 ~~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PA-VgGnEGv~eVv~vGs~v--------kgfk~Gd~VIp~~a~lGt 114 (354)
T KOG0025|consen 45 VPGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPA-VGGNEGVGEVVAVGSNV--------KGFKPGDWVIPLSANLGT 114 (354)
T ss_pred CCCCc-eeeeeeecCCChHHhhhhccccCCCCCCCc-ccCCcceEEEEEecCCc--------CccCCCCeEeecCCCCcc
Confidence 35556 8887665431 2223444 131 11123579999999864 238999999976644 54
Q ss_pred E---EEEcCeeeEEE
Q 025446 131 E---LEFNGANHLIL 142 (252)
Q Consensus 131 e---v~~~g~~~~il 142 (252)
. ..+++.+++-+
T Consensus 115 W~t~~v~~e~~Li~v 129 (354)
T KOG0025|consen 115 WRTEAVFSESDLIKV 129 (354)
T ss_pred ceeeEeecccceEEc
Confidence 4 33444444433
No 26
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=58.77 E-value=8.6 Score=34.27 Aligned_cols=30 Identities=33% Similarity=0.504 Sum_probs=20.5
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++..... ..-.+|+||+|...
T Consensus 6 ~~G~V~~vG~~v~~~~--~~~~~~~GdrV~~~ 35 (280)
T TIGR03366 6 IVGEVVALRGGFTPAD--DGVPLRLGQRVVWS 35 (280)
T ss_pred cceEEEEeCCCccccc--cCCCCCCCCEEEEc
Confidence 5799999999863110 00148999999864
No 27
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=58.56 E-value=17 Score=35.34 Aligned_cols=22 Identities=36% Similarity=0.764 Sum_probs=19.3
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEE
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVM 222 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vl 222 (252)
-.|.|.+||+|.. .+++||+|+
T Consensus 69 aaGIVESvGegV~---------~vk~GD~Vi 90 (375)
T KOG0022|consen 69 AAGIVESVGEGVT---------TVKPGDHVI 90 (375)
T ss_pred ceeEEEEecCCcc---------ccCCCCEEe
Confidence 4799999999874 699999998
No 28
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.68 E-value=14 Score=34.60 Aligned_cols=72 Identities=24% Similarity=0.335 Sum_probs=43.7
Q ss_pred eeCCeEEEEEecc-----cccccceEEeeccc----ccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecC-C--CC
Q 025446 161 PLNDRVFIKVAEA-----EETTAGGLLLTEAS----KEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK-Y--AG 228 (252)
Q Consensus 161 PL~DRVLVk~~e~-----e~kT~gGI~Lp~sa----kek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k-y--aG 228 (252)
|=.+.|||+..-. +-....|-.-|... --.-..|+|++||++.. ..++||+|.+.. . .|
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~---------~~~~GdrV~~~~~~~~~G 95 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT---------GFKVGDRVAALGGVGRDG 95 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC---------CcCCCCEEEEccCCCCCC
Confidence 7778999998643 22333443111110 12236899999999864 249999999984 2 22
Q ss_pred cEEEecCCeEEEEEeCCce
Q 025446 229 NDFKGSDGTNYIALRASEV 247 (252)
Q Consensus 229 ~evk~~dg~~y~v~re~DI 247 (252)
.--||..+.++.+
T Consensus 96 ------~~AEy~~v~a~~~ 108 (326)
T COG0604 96 ------GYAEYVVVPADWL 108 (326)
T ss_pred ------cceeEEEecHHHc
Confidence 1246777766544
No 29
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=56.48 E-value=21 Score=34.33 Aligned_cols=55 Identities=29% Similarity=0.407 Sum_probs=32.9
Q ss_pred eeCCeEEEEEecccc-----cccceEEe--ec--ccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025446 161 PLNDRVFIKVAEAEE-----TTAGGLLL--TE--ASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 225 (252)
Q Consensus 161 PL~DRVLVk~~e~e~-----kT~gGI~L--p~--sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 225 (252)
|.+| |+||-+.+.- .+--|.|= |+ .---....|+||+||.+.. .+|+||+|+-..
T Consensus 46 ~~s~-v~Vk~LAaPINPsDIN~IQGvYpvrP~~PAVgGnEGv~eVv~vGs~vk---------gfk~Gd~VIp~~ 109 (354)
T KOG0025|consen 46 PGSD-VLVKMLAAPINPSDINQIQGVYPVRPELPAVGGNEGVGEVVAVGSNVK---------GFKPGDWVIPLS 109 (354)
T ss_pred CCCc-eeeeeeecCCChHHhhhhccccCCCCCCCcccCCcceEEEEEecCCcC---------ccCCCCeEeecC
Confidence 6667 7777765432 12234431 11 1112235789999998542 389999998755
No 30
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=56.27 E-value=40 Score=29.14 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=27.6
Q ss_pred eEEecCCCCCCCcceeEEEecCceeeCCCceeeeccCCcEEEeecCC
Q 025446 82 GIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA 128 (252)
Q Consensus 82 GI~LP~sa~~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~ 128 (252)
+|+||-. -+...|.|+|+..+++ .|..+++|+.++|..++
T Consensus 48 ~vvl~lG--G~rs~~Vvia~~d~~y-----R~~~L~~GEvalY~~~G 87 (162)
T PF06890_consen 48 AVVLFLG--GDRSHGVVIAVEDRRY-----RPKGLKPGEVALYDDEG 87 (162)
T ss_pred EEEEEec--cCCcceEEEEeCCccc-----cccCCCCCcEEEEcCCC
Confidence 4555543 2456788888887653 23458999999999765
No 31
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=55.11 E-value=16 Score=32.61 Aligned_cols=30 Identities=27% Similarity=0.463 Sum_probs=21.4
Q ss_pred cceeEEEecCCccC-CCCCeeeecCCCCCEEEecC
Q 025446 192 SIGMVIAVGPGPLD-EEGNRKPLSIAPGNTVMYSK 225 (252)
Q Consensus 192 ~~G~VVAVGpG~~~-~~G~~~p~~Vk~GD~Vlf~k 225 (252)
..|+|+++|++... .+|+ .+++||+|....
T Consensus 6 ~~G~V~~vG~~v~~~~~~~----~~~~GdrV~~~~ 36 (280)
T TIGR03366 6 IVGEVVALRGGFTPADDGV----PLRLGQRVVWSV 36 (280)
T ss_pred cceEEEEeCCCccccccCC----CCCCCCEEEEcC
Confidence 46999999998642 1221 489999998643
No 32
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=54.23 E-value=25 Score=33.90 Aligned_cols=24 Identities=46% Similarity=0.577 Sum_probs=20.5
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
...|+|++||++.. .+|+||+|-.
T Consensus 64 EivG~V~~vG~~V~--------~~k~GDrVgV 87 (339)
T COG1064 64 EIVGTVVEVGEGVT--------GLKVGDRVGV 87 (339)
T ss_pred ceEEEEEEecCCCc--------cCCCCCEEEe
Confidence 36899999999862 5899999987
No 33
>PF02559 CarD_CdnL_TRCF: CarD-like/TRCF domain; InterPro: IPR003711 The bacterium Myxococcus xanthus responds to blue light by producing carotenoids. It also responds to starvation conditions by developing fruiting bodies, where the cells differentiate into myxospores. Each response entails the transcriptional activation of a separate set of genes. A single gene, carD, is required for the activation of both light- and starvation-inducible genes []. The predicted protein contains four repeats of a DNA-binding domain present in mammalian high mobility group I(Y) proteins and other nuclear proteins from animals and plants. Other peptide stretches on CarD also resemble functional domains typical of eukaryotic transcription factors, including a very acidic region and a leucine zipper. High mobility group yI(Y) proteins are known to bind the minor groove of A+T-rich DNA [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3MLQ_H 2EYQ_A.
Probab=53.34 E-value=17 Score=27.92 Aligned_cols=14 Identities=21% Similarity=0.147 Sum_probs=11.0
Q ss_pred ccCCcEEEeecCCc
Q 025446 116 VKPGTQVIYSKYAG 129 (252)
Q Consensus 116 VkvGD~Vl~~ky~G 129 (252)
.++||.|+|+.++-
T Consensus 2 f~~GD~VVh~~~Gv 15 (98)
T PF02559_consen 2 FKIGDYVVHPNHGV 15 (98)
T ss_dssp --TTSEEEETTTEE
T ss_pred CCCCCEEEECCCce
Confidence 57999999999983
No 34
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=53.01 E-value=18 Score=33.93 Aligned_cols=56 Identities=34% Similarity=0.411 Sum_probs=34.5
Q ss_pred ccCCeEEEEeccc-----ccccceeEEecCCCC----CCCcceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025446 63 PLGDRVLVKIKTV-----EEKTDGGIFLPSAAQ----TKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (252)
Q Consensus 63 PLgDRVLVk~~~~-----e~kT~gGI~LP~sa~----~k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k 126 (252)
|-.+.|||+..-. +-....|-.-|.... -.-..|+|+|||++.. ..++||+|++..
T Consensus 25 p~~geVlVrV~a~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~--------~~~~GdrV~~~~ 89 (326)
T COG0604 25 PGPGEVLVRVKAAGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVT--------GFKVGDRVAALG 89 (326)
T ss_pred CCCCeEEEEEEEeecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCC--------CcCCCCEEEEcc
Confidence 6668888876542 233334431111111 1235899999999862 239999999984
No 35
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=51.25 E-value=16 Score=33.10 Aligned_cols=23 Identities=30% Similarity=0.625 Sum_probs=18.9
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. .+++||+|+..
T Consensus 66 ~~G~V~~vG~~v---------~~~vGdrV~~~ 88 (308)
T TIGR01202 66 SVGRVVEAGPDT---------GFRPGDRVFVP 88 (308)
T ss_pred eEEEEEEecCCC---------CCCCCCEEEEe
Confidence 589999999873 36999999863
No 36
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=48.89 E-value=67 Score=26.93 Aligned_cols=65 Identities=20% Similarity=0.243 Sum_probs=44.3
Q ss_pred eEEEEEecccccccceEEe-----ecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEE
Q 025446 165 RVFIKVAEAEETTAGGLLL-----TEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFK 232 (252)
Q Consensus 165 RVLVk~~e~e~kT~gGI~L-----p~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk 232 (252)
-|-.-+..+|.+..-|.-+ |++. ..|+.-..+.+| +.+++|+.++..++.|+..+|....++.+.
T Consensus 43 pVT~hVen~e~~pi~~~ev~lmKa~ds~-~qPs~eig~~IG--KTD~~Gki~Wk~~~kG~Y~v~l~n~e~~~~ 112 (131)
T PF10794_consen 43 PVTFHVENAEGQPIKDFEVTLMKAADSD-PQPSKEIGISIG--KTDEEGKIIWKNGRKGKYIVFLPNGETQET 112 (131)
T ss_pred cEEEEEecCCCCcccceEEEEEeccccC-CCCchhhceeec--ccCCCCcEEEecCCcceEEEEEcCCCceeE
Confidence 3444444445444444332 2332 356766677776 578999999999999999999998887654
No 37
>PF06890 Phage_Mu_Gp45: Bacteriophage Mu Gp45 protein; InterPro: IPR014462 This entry is represented by the Bacteriophage Mu, Gp45. The characteristics of the protein distribution suggest prophage matches.
Probab=45.34 E-value=41 Score=29.06 Aligned_cols=46 Identities=24% Similarity=0.394 Sum_probs=31.4
Q ss_pred ceEEeecccccCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEe
Q 025446 179 GGLLLTEASKEKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKG 233 (252)
Q Consensus 179 gGI~Lp~sakek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~ 233 (252)
-+|+||-.- +.+.|.|||+..+ ...|..+++|+.++|.+++ ..|.+
T Consensus 47 ~~vvl~lGG--~rs~~Vvia~~d~------~yR~~~L~~GEvalY~~~G-~~I~L 92 (162)
T PF06890_consen 47 EAVVLFLGG--DRSHGVVIAVEDR------RYRPKGLKPGEVALYDDEG-QKIHL 92 (162)
T ss_pred eEEEEEecc--CCcceEEEEeCCc------cccccCCCCCcEEEEcCCC-CEEEE
Confidence 467776543 4678888888654 4455569999999999754 54443
No 38
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=44.05 E-value=23 Score=33.80 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=20.0
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|.+.
T Consensus 69 ~~G~V~~vG~~V~---------~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDVE---------FIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCccc---------cccCCCEEEEe
Confidence 5899999999753 48999999774
No 39
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=42.59 E-value=23 Score=32.53 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=18.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++ . .+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~---------~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S---------GLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C---------CCCCCCEEEec
Confidence 58999999986 2 37999999864
No 40
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=42.48 E-value=22 Score=33.89 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=20.0
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|...
T Consensus 69 ~~G~V~~vG~~V--------~~~~vGdrV~~~ 92 (393)
T TIGR02819 69 ITGEVIEKGRDV--------EFIKIGDIVSVP 92 (393)
T ss_pred eEEEEEEEcCcc--------ccccCCCEEEEe
Confidence 589999999985 248999999774
No 41
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=42.46 E-value=48 Score=30.38 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.2
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|++
T Consensus 64 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 86 (329)
T TIGR02822 64 VVGEVAGRGADAG---------GFAVGDRVGI 86 (329)
T ss_pred eEEEEEEECCCCc---------ccCCCCEEEE
Confidence 5899999998752 4799999985
No 42
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=41.72 E-value=39 Score=25.10 Aligned_cols=55 Identities=24% Similarity=0.373 Sum_probs=43.4
Q ss_pred eecccc--cCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCeEEEEE
Q 025446 183 LTEASK--EKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGTNYIAL 242 (252)
Q Consensus 183 Lp~sak--ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~~y~v~ 242 (252)
+|..|- -....|+.+-||-+.. +|+++|-.|.+.....|-.|.|.|+.+ .+|=++
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~--~g~~~pGKv~p~~~~~yi~~~g~E~~~---~~YEVL 68 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY--EGSLLPGKVVPSHGCAYIPYGGQEVRL---DSYEVL 68 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE--CCcEEEEEEEccCCEEEEEECCEEEEc---CeEEEE
Confidence 476653 2345788899997665 788999999999999999999999995 367665
No 43
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=38.04 E-value=27 Score=33.60 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|++||++.. .+|+||+|-.
T Consensus 65 ivG~V~~vG~~V~---------~~k~GDrVgV 87 (339)
T COG1064 65 IVGTVVEVGEGVT---------GLKVGDRVGV 87 (339)
T ss_pred eEEEEEEecCCCc---------cCCCCCEEEe
Confidence 6899999999874 4899999988
No 44
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=37.31 E-value=51 Score=31.09 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|..
T Consensus 68 ~aG~Vv~vG~~v~---------~~~vGdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNVT---------KFKEGDRVGV 90 (375)
T ss_pred eeEEEEEECCCCC---------ccCCCCEEEE
Confidence 5799999998752 4799999974
No 45
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=36.91 E-value=41 Score=26.40 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=17.6
Q ss_pred cCCCCCEEEecCCCCcEEEecCCeEEEEEe
Q 025446 214 SIAPGNTVMYSKYAGNDFKGSDGTNYIALR 243 (252)
Q Consensus 214 ~Vk~GD~Vlf~kyaG~evk~~dg~~y~v~r 243 (252)
.+|+||+|+.-. . .+|+.|+++.
T Consensus 76 ~Lk~GD~V~ll~-----~--~~gQ~yiVlD 98 (100)
T PF10844_consen 76 GLKVGDKVLLLR-----V--QGGQKYIVLD 98 (100)
T ss_pred CCcCCCEEEEEE-----e--cCCCEEEEEE
Confidence 599999999866 2 3677888764
No 46
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=36.44 E-value=35 Score=30.95 Aligned_cols=23 Identities=35% Similarity=0.761 Sum_probs=18.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++. .+++||+|...
T Consensus 66 ~~G~V~~vG~~v----------~~~vGdrV~~~ 88 (308)
T TIGR01202 66 SVGRVVEAGPDT----------GFRPGDRVFVP 88 (308)
T ss_pred eEEEEEEecCCC----------CCCCCCEEEEe
Confidence 589999999863 26999999863
No 47
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=35.69 E-value=3.3e+02 Score=24.45 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=11.8
Q ss_pred eee-eccCCcEEEeecCCceEEEEc
Q 025446 112 LDI-SVKPGTQVIYSKYAGTELEFN 135 (252)
Q Consensus 112 vp~-~VkvGD~Vl~~ky~G~ev~~~ 135 (252)
++| ++++||+|+-..-.| ++.|.
T Consensus 27 k~m~~L~iGD~Vla~d~~G-~~~yS 50 (217)
T PF01079_consen 27 KRMSDLKIGDRVLAVDSDG-KLVYS 50 (217)
T ss_dssp EEGGG--TT-EEEEE-TTS--EEEE
T ss_pred eEHHHCCCCCEEEEecCCC-cEEEE
Confidence 444 899999999877444 34443
No 48
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=35.43 E-value=62 Score=29.76 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=17.7
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|.+ .+++||+|.+.
T Consensus 66 ~~G~V~~~g~~----------~~~vGdrV~~~ 87 (341)
T cd08237 66 GIGVVVSDPTG----------TYKVGTKVVMV 87 (341)
T ss_pred eEEEEEeeCCC----------ccCCCCEEEEC
Confidence 57999998763 37999999875
No 49
>COG3450 Predicted enzyme of the cupin superfamily [General function prediction only]
Probab=34.89 E-value=90 Score=25.66 Aligned_cols=38 Identities=13% Similarity=0.348 Sum_probs=25.7
Q ss_pred eeeCCCceeeeccCCcEEEeec-CCceEEEEcC-eeeEEE
Q 025446 105 KTVGKAKLDISVKPGTQVIYSK-YAGTELEFNG-ANHLIL 142 (252)
Q Consensus 105 ~~~~~~~vp~~VkvGD~Vl~~k-y~G~ev~~~g-~~~~il 142 (252)
....++..|..+++||.++|++ |.|+.-..+. .+++++
T Consensus 75 ~~T~d~Ge~v~~~aGD~~~~~~G~~g~W~V~EtvrK~Yv~ 114 (116)
T COG3450 75 EVTPDGGEPVEVRAGDSFVFPAGFKGTWEVLETVRKHYVI 114 (116)
T ss_pred EEECCCCeEEEEcCCCEEEECCCCeEEEEEeeeeEEEEEE
Confidence 3344455688999999999997 8886644443 344444
No 50
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=33.99 E-value=40 Score=31.40 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=18.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|++
T Consensus 74 ~~G~V~~vG~~v~---------~~~vGdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNVK---------KFKEGDRVGV 96 (360)
T ss_pred eeEEEEEECCCCC---------ccCCCCEEEE
Confidence 5799999998752 4799999974
No 51
>TIGR03214 ura-cupin putative allantoin catabolism protein. This model represents a protein containing a tandem arrangement of cupin domains (N-terminal part of pfam07883 and C-terminal more distantly related to pfam00190). This protein is found in the vicinity of genes involved in the catabolism of allantoin, a breakdown product of urate and sometimes of urate iteslf. The distribution of pathway components in the genomes in which this family is observed suggests that the function is linked to the allantoate catabolism to glyoxylate pathway (GenProp0686) since it is sometimes found in genomes lacking any elements of the xanthine-to-allantoin pathways (e.g. in Enterococcus faecalis).
Probab=33.53 E-value=47 Score=30.32 Aligned_cols=49 Identities=16% Similarity=0.385 Sum_probs=37.7
Q ss_pred ceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEecCCe---EEEEEeC
Q 025446 193 IGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKGSDGT---NYIALRA 244 (252)
Q Consensus 193 ~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~~dg~---~y~v~re 244 (252)
.+.-|==|.|.+..||+.. .|++||.+..+.|.=..+. ..|+ +|+++++
T Consensus 202 h~~yiL~G~G~~~~~g~~~--~V~~GD~i~i~~~~~h~~~-~~G~~~~~~l~ykd 253 (260)
T TIGR03214 202 HGLYVLEGKGVYNLDNNWV--PVEAGDYIWMGAYCPQACY-AGGRGEFRYLLYKD 253 (260)
T ss_pred eEEEEEeceEEEEECCEEE--EecCCCEEEECCCCCEEEE-ecCCCcEEEEEEcc
Confidence 4667777888888888755 6999999999999988886 4332 6777654
No 52
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=33.50 E-value=76 Score=29.35 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=19.1
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|++||++. ..+++||+|+..
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~Vv~~ 84 (365)
T cd05279 61 GAGIVESIGPGV--------TTLKPGDKVIPL 84 (365)
T ss_pred eeEEEEEeCCCc--------ccCCCCCEEEEc
Confidence 579999999864 247899999864
No 53
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=33.21 E-value=34 Score=31.41 Aligned_cols=23 Identities=35% Similarity=0.658 Sum_probs=18.8
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++ . .+++||+|+..
T Consensus 65 ~~G~V~~vG~~-~--------~~~vGdrV~~~ 87 (355)
T cd08230 65 ALGVVEEVGDG-S--------GLSPGDLVVPT 87 (355)
T ss_pred cceEEEEecCC-C--------CCCCCCEEEec
Confidence 57999999987 2 37999999864
No 54
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=32.27 E-value=38 Score=31.58 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=19.0
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 74 ~~G~V~~vG~~v--------~~~~vGdrV~~ 96 (360)
T PLN02586 74 IVGIVTKLGKNV--------KKFKEGDRVGV 96 (360)
T ss_pred eeEEEEEECCCC--------CccCCCCEEEE
Confidence 579999999875 24799999974
No 55
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.14 E-value=45 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=18.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|+.
T Consensus 69 ~~G~V~~vG~~v~---------~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGVT---------DLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCCC---------cCCCCCEEEE
Confidence 5799999998652 4799999986
No 56
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=32.06 E-value=38 Score=31.48 Aligned_cols=23 Identities=43% Similarity=0.690 Sum_probs=19.1
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 69 ~~G~V~~vG~~v--------~~~~~GdrV~~ 91 (371)
T cd08281 69 AAGVVVEVGEGV--------TDLEVGDHVVL 91 (371)
T ss_pred ceeEEEEeCCCC--------CcCCCCCEEEE
Confidence 579999999875 24799999986
No 57
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=31.49 E-value=46 Score=30.33 Aligned_cols=25 Identities=36% Similarity=0.485 Sum_probs=19.8
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
...|+|+++|++.. .+++||+|+..
T Consensus 60 e~~G~V~~vG~~v~---------~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGVD---------DLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEEC
Confidence 35799999998652 47999999864
No 58
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=30.97 E-value=1.3e+02 Score=29.12 Aligned_cols=72 Identities=24% Similarity=0.465 Sum_probs=44.0
Q ss_pred ccceeeeeC--CeEEEEEecc----c----ccccceEEeeccc-ccCC---------cceeEEEecCCccCCCCCe-eee
Q 025446 155 EIKDLKPLN--DRVFIKVAEA----E----ETTAGGLLLTEAS-KEKP---------SIGMVIAVGPGPLDEEGNR-KPL 213 (252)
Q Consensus 155 ~~~~l~PL~--DRVLVk~~e~----e----~kT~gGI~Lp~sa-kek~---------~~G~VVAVGpG~~~~~G~~-~p~ 213 (252)
.++.+.||+ |||-|-...- | -.+++|+||=-+- .+.| |-|-|-|- .+-++|+. .-.
T Consensus 203 ~vt~ieplG~gDRVCVDTcsLm~~gEGMLVGs~s~gmFlVhsEs~espYVAaRPFRVNAG~VhaY---i~vPg~kTkYLa 279 (376)
T COG1465 203 TVTEIEPLGSGDRVCVDTCSLMTRGEGMLVGSQSRGMFLVHSESEESPYVAARPFRVNAGAVHAY---IRVPGGKTKYLA 279 (376)
T ss_pred EEEEEeecCCCceEEEeeecccccCCceEeecccCcEEEEecccccCcccccCceeecccceeEE---EEcCCCceEEhh
Confidence 467899985 9998876542 1 2457888885432 2222 34444331 01123333 333
Q ss_pred cCCCCCEEEecCCCCc
Q 025446 214 SIAPGNTVMYSKYAGN 229 (252)
Q Consensus 214 ~Vk~GD~Vlf~kyaG~ 229 (252)
.++.||.|+.-+|.|.
T Consensus 280 EL~aGDeV~iVD~dGr 295 (376)
T COG1465 280 ELKAGDEVLIVDFDGR 295 (376)
T ss_pred hhcCCCeEEEEecCCc
Confidence 7999999999999986
No 59
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=30.71 E-value=2.6e+02 Score=23.35 Aligned_cols=49 Identities=10% Similarity=0.228 Sum_probs=26.0
Q ss_pred eccCccceeeeeCCeEEEEEecc--cccccceEEeeccc--ccCCcceeEEEe
Q 025446 151 LETDEIKDLKPLNDRVFIKVAEA--EETTAGGLLLTEAS--KEKPSIGMVIAV 199 (252)
Q Consensus 151 let~~~~~l~PL~DRVLVk~~e~--e~kT~gGI~Lp~sa--kek~~~G~VVAV 199 (252)
+..+.|..-..-+|+||+.+..- .+-..|-|++=... ..+...-.|+++
T Consensus 25 v~g~SM~Ptl~~Gd~vlv~k~~~~~~~~~rGDiVvf~~~~~~~~~~iKRVig~ 77 (163)
T TIGR02227 25 IPGGSMEPTLKEGDRILVNKFAYGTSDPKRGDIVVFKDPDDNKNIYVKRVIGL 77 (163)
T ss_pred ECCcccccchhCCCEEEEEEeEcCCCCCCCCcEEEEecCCCCCceeEEEEEec
Confidence 44555544444699999998632 22334556653221 122345555555
No 60
>PF08140 Cuticle_1: Crustacean cuticle protein repeat; InterPro: IPR012539 This family consists of the cuticle proteins from the Cancer pagurus (Rock crab) and the Homarus americanus (American lobster). These proteins are isolated from the calcified regions of the crustacean and they contain two copies of an 18 residue sequence motif, which thus far has been found only in crustacean calcified exoskeletons [].; GO: 0042302 structural constituent of cuticle
Probab=30.46 E-value=60 Score=22.04 Aligned_cols=25 Identities=20% Similarity=0.477 Sum_probs=17.1
Q ss_pred ceeEEecCCCCCC--CcceeEEEecCc
Q 025446 80 DGGIFLPSAAQTK--PQAGEVVAVGEG 104 (252)
Q Consensus 80 ~gGI~LP~sa~~k--~~~G~VVAVG~G 104 (252)
.+||+.|+...-. +-...|+.+||-
T Consensus 2 ~SGii~~dG~~~q~~~~~a~ivl~GpS 28 (40)
T PF08140_consen 2 PSGIITPDGTNVQFPHGVANIVLIGPS 28 (40)
T ss_pred CCceECCCCCEEECCcccceEEEECCc
Confidence 4799999975432 223379999984
No 61
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=30.14 E-value=40 Score=30.70 Aligned_cols=25 Identities=36% Similarity=0.469 Sum_probs=19.9
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
...|+|+++|++. ..+++||+|+..
T Consensus 60 e~~G~V~~vG~~v--------~~~~vGd~V~~~ 84 (347)
T PRK10309 60 EFSGYVEAVGSGV--------DDLHPGDAVACV 84 (347)
T ss_pred ceEEEEEEeCCCC--------CCCCCCCEEEEC
Confidence 3579999999875 247999999863
No 62
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=30.05 E-value=89 Score=27.38 Aligned_cols=27 Identities=30% Similarity=0.288 Sum_probs=20.6
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEeecCC
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYA 128 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~ 128 (252)
..|.|+++|++. ...++||+|+...++
T Consensus 59 ~~G~V~~vG~~v--------~~~~~Gd~V~~~~~g 85 (312)
T cd08269 59 GWGRVVALGPGV--------RGLAVGDRVAGLSGG 85 (312)
T ss_pred eEEEEEEECCCC--------cCCCCCCEEEEecCC
Confidence 579999999874 246899999975443
No 63
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=29.58 E-value=45 Score=30.58 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=19.2
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 64 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 86 (329)
T TIGR02822 64 VVGEVAGRGADA--------GGFAVGDRVGI 86 (329)
T ss_pred eEEEEEEECCCC--------cccCCCCEEEE
Confidence 589999999985 24799999975
No 64
>smart00696 DM9 Repeats found in Drosophila proteins.
Probab=28.76 E-value=1.3e+02 Score=22.26 Aligned_cols=55 Identities=25% Similarity=0.380 Sum_probs=40.7
Q ss_pred ecCCCCC--CCcceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEEcCeeeEEE
Q 025446 85 LPSAAQT--KPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIL 142 (252)
Q Consensus 85 LP~sa~~--k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~~g~~~~il 142 (252)
+|..|-. ....|+.+-||-+.. ++..+|-.|.+.....|-.|+|.|+.++ +|-+|
T Consensus 12 vP~~AV~~G~~~~G~~lYvgR~~~-~g~~~pGKv~p~~~~~yi~~~g~E~~~~--~YEVL 68 (71)
T smart00696 12 IPPNAVVGGTDSDGEPLYVGRAYY-EGSLLPGKVVPSHGCAYIPYGGQEVRLD--SYEVL 68 (71)
T ss_pred CCCCcEEcccCCCCCEEEEEEEEE-CCcEEEEEEEccCCEEEEEECCEEEEcC--eEEEE
Confidence 4776643 345788999997764 3345788899999999999999999884 44443
No 65
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=28.64 E-value=57 Score=29.41 Aligned_cols=24 Identities=17% Similarity=0.084 Sum_probs=19.3
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|++.
T Consensus 76 ~~G~V~~vG~~v~---------~~~~Gd~V~~~ 99 (345)
T cd08293 76 GGGVGVVEESKHQ---------KFAVGDIVTSF 99 (345)
T ss_pred eeEEEEEeccCCC---------CCCCCCEEEec
Confidence 5799999998652 47999999863
No 66
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=28.48 E-value=52 Score=30.42 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=19.4
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 87 (369)
T cd08301 64 AAGIVESVGEGVT---------DLKPGDHVLPV 87 (369)
T ss_pred cceEEEEeCCCCC---------ccccCCEEEEc
Confidence 5799999998652 47999999863
No 67
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=28.39 E-value=94 Score=30.75 Aligned_cols=92 Identities=24% Similarity=0.331 Sum_probs=62.6
Q ss_pred EEeecCCceEEEEcCeeeEEEeccceeeeeccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecC
Q 025446 122 VIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGP 201 (252)
Q Consensus 122 Vl~~ky~G~ev~~~g~~~~il~e~DIlavlet~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGp 201 (252)
++|++-+=++|-++|++|.=||-. +.+=+.|.+++=+||+ |+|--.|++++. |..|+|+|+--
T Consensus 19 ~i~~~~~i~~Vallg~ey~gmrp~--mkV~~gD~VkkGq~Lf----------EdKknpgv~~Ta-----p~sG~V~aI~R 81 (447)
T COG1726 19 VIYDGPAITEVALLGEEYVGMRPS--MKVREGDAVKKGQVLF----------EDKKNPGVVFTA-----PVSGKVTAIHR 81 (447)
T ss_pred hccCCCCccEEEEccccccCCCCc--ceeccCCeeeccceee----------ecccCCCeEEec-----cCCceEEEeec
Confidence 377777778888999999877754 2333455566666664 567778888863 67899999976
Q ss_pred CccCCCCCeeeecCCCCCEEEecCCCCcEE
Q 025446 202 GPLDEEGNRKPLSIAPGNTVMYSKYAGNDF 231 (252)
Q Consensus 202 G~~~~~G~~~p~~Vk~GD~Vlf~kyaG~ev 231 (252)
|..-- =+-+-..++.|+.+-|.+|.-...
T Consensus 82 G~KRv-LqsVVI~~~g~~~~tf~~Y~~~~L 110 (447)
T COG1726 82 GEKRV-LQSVVIKVEGDEQITFEKYDLEQL 110 (447)
T ss_pred cccee-eeeEEEEecCCcccceeecCHHHH
Confidence 64211 011234678899999999986654
No 68
>PLN02827 Alcohol dehydrogenase-like
Probab=28.19 E-value=53 Score=30.84 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=19.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|+..
T Consensus 71 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGVT---------EFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCCc---------ccCCCCEEEEe
Confidence 5799999998753 47999999874
No 69
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=28.18 E-value=47 Score=31.50 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=19.6
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++.. ..+++||+|+..
T Consensus 70 ~~G~V~~vG~~v~-------~~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQ-------GKYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCcc-------CCCCCCCEEEEc
Confidence 4799999998741 137999999874
No 70
>TIGR00739 yajC preprotein translocase, YajC subunit. While this protein is part of the preprotein translocase in Escherichia coli, it is not essential for viability or protein secretion. The N-terminus region contains a predicted membrane-spanning region followed by a region consisting almost entirely of residues with charged (acidic, basic, or zwitterionic) side chains. This small protein is about 100 residues in length, and is restricted to bacteria; however, this protein is absent from some lineages, including spirochetes and Mycoplasmas.
Probab=28.16 E-value=90 Score=23.91 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=17.2
Q ss_pred eeccCCcEEEeec-CCceEEEEcCe
Q 025446 114 ISVKPGTQVIYSK-YAGTELEFNGA 137 (252)
Q Consensus 114 ~~VkvGD~Vl~~k-y~G~ev~~~g~ 137 (252)
-++++||+|+..- .-|+=++.+++
T Consensus 36 ~~L~~Gd~VvT~gGi~G~V~~i~d~ 60 (84)
T TIGR00739 36 ESLKKGDKVLTIGGIIGTVTKIAEN 60 (84)
T ss_pred HhCCCCCEEEECCCeEEEEEEEeCC
Confidence 4789999998764 55666677654
No 71
>PF11901 DUF3421: Protein of unknown function (DUF3421); InterPro: IPR024518 This domain of unknown function is found in the fish toxin Natterin [] and in uncharacterised proteins.
Probab=28.13 E-value=2.7e+02 Score=22.42 Aligned_cols=110 Identities=23% Similarity=0.327 Sum_probs=71.5
Q ss_pred ceeEEEecCceeeCCCceeeeccCCcEEEeecCCceEEEEcCeeeEEEeccceeeeeccCccceeeeeCCeEEEEEeccc
Q 025446 95 AGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAE 174 (252)
Q Consensus 95 ~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ky~G~ev~~~g~~~~il~e~DIlavlet~~~~~l~PL~DRVLVk~~e~e 174 (252)
.|..+-||-.. ..++.+|-.+-+....-|-.|+|.|...+. |-+|=.++.- -.+.|-.
T Consensus 7 ~g~~iYV~Ra~-~~g~~~Pgkv~p~~~~c~i~~gG~e~~~~~--yEVL~~~~~~--------~~Wv~~~----------- 64 (119)
T PF11901_consen 7 DGEPIYVGRAK-HEGDLLPGKVVPSKGACYIPYGGKEHSKTN--YEVLCGDDNF--------YEWVPSS----------- 64 (119)
T ss_pred CCCEEEEEEEE-ECCccEeeEEecCCCEEEEECCcceEEece--EEeecCCCCc--------cEEEECC-----------
Confidence 46778888664 334457777777777888888998888765 4444333331 1122211
Q ss_pred ccccceEEeecccc--cCCcceeEEEecCCccCCCCCeeeecCCCCCEEEecCCCCcEEEe
Q 025446 175 ETTAGGLLLTEASK--EKPSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKYAGNDFKG 233 (252)
Q Consensus 175 ~kT~gGI~Lp~sak--ek~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~kyaG~evk~ 233 (252)
+| .+|..|- -....|+.+-||-... +|..+|=.|.++..+.|-.|.|.|+.+
T Consensus 65 ----~g-~iP~~av~~G~~~~Ge~lyIgR~~~--~g~~~~GKv~~s~~~~~ip~gG~E~~~ 118 (119)
T PF11901_consen 65 ----DG-NIPPNAVVGGRTEDGEPLYIGRAHY--NGSLIPGKVHPSHKCCYIPYGGKEISF 118 (119)
T ss_pred ----CC-CcCCCcEEcccccCCCEEEEEEEEE--CCeeEEEEEEcCCCEEEEEECCEEEEc
Confidence 12 1233321 1344588888886654 678888889999999999999999874
No 72
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=27.93 E-value=49 Score=29.86 Aligned_cols=24 Identities=17% Similarity=0.007 Sum_probs=19.4
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 76 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 99 (345)
T cd08293 76 GGGVGVVEESKH--------QKFAVGDIVTSF 99 (345)
T ss_pred eeEEEEEeccCC--------CCCCCCCEEEec
Confidence 579999999875 247999999863
No 73
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=27.81 E-value=49 Score=31.21 Aligned_cols=23 Identities=26% Similarity=0.290 Sum_probs=18.9
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 68 ~aG~Vv~vG~~v--------~~~~vGdrV~~ 90 (375)
T PLN02178 68 IVGIATKVGKNV--------TKFKEGDRVGV 90 (375)
T ss_pred eeEEEEEECCCC--------CccCCCCEEEE
Confidence 579999999875 24799999974
No 74
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=27.46 E-value=62 Score=30.71 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=19.6
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++... .+++||+|...
T Consensus 70 ~~G~V~~vG~~v~~--------~~~vGdrV~~~ 94 (410)
T cd08238 70 FAGTILKVGKKWQG--------KYKPGQRFVIQ 94 (410)
T ss_pred cEEEEEEeCCCccC--------CCCCCCEEEEc
Confidence 47999999986521 37999999874
No 75
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=27.45 E-value=47 Score=30.68 Aligned_cols=23 Identities=48% Similarity=0.733 Sum_probs=19.2
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 64 ~~G~V~~vG~~v--------~~~~~GdrV~~ 86 (369)
T cd08301 64 AAGIVESVGEGV--------TDLKPGDHVLP 86 (369)
T ss_pred cceEEEEeCCCC--------CccccCCEEEE
Confidence 479999999875 24799999986
No 76
>PF09871 DUF2098: Uncharacterized protein conserved in archaea (DUF2098); InterPro: IPR019209 This family of proteins have no known function.
Probab=26.84 E-value=1.1e+02 Score=24.02 Aligned_cols=35 Identities=29% Similarity=0.533 Sum_probs=26.6
Q ss_pred cCCCCCEEEecCCC--C--cEEEecCCeEEEEEeCCceE
Q 025446 214 SIAPGNTVMYSKYA--G--NDFKGSDGTNYIALRASEVM 248 (252)
Q Consensus 214 ~Vk~GD~Vlf~kya--G--~evk~~dg~~y~v~re~DIL 248 (252)
++++|+.|.|..-+ | .+++..||+.|.++...|++
T Consensus 2 ~I~vGs~VRY~~TGT~G~V~diK~ed~~~wv~LD~t~L~ 40 (91)
T PF09871_consen 2 PIKVGSYVRYINTGTVGKVVDIKEEDGETWVLLDSTDLY 40 (91)
T ss_pred cceeCCEEEECCCCeEEEEEEEEEeCCCeEEEEccCCce
Confidence 57899999988754 3 25676688899999777764
No 77
>PLN02827 Alcohol dehydrogenase-like
Probab=26.12 E-value=52 Score=30.94 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=19.8
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 71 ~~G~V~~vG~~v--------~~~~~GdrV~~~ 94 (378)
T PLN02827 71 ASGIVESIGEGV--------TEFEKGDHVLTV 94 (378)
T ss_pred ceEEEEEcCCCC--------cccCCCCEEEEe
Confidence 579999999885 247999999864
No 78
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=26.08 E-value=1.4e+02 Score=26.16 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=20.1
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEecCC
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSKY 226 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ky 226 (252)
..|.|+++|++.. ..++||+|+...+
T Consensus 59 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~~ 84 (312)
T cd08269 59 GWGRVVALGPGVR---------GLAVGDRVAGLSG 84 (312)
T ss_pred eEEEEEEECCCCc---------CCCCCCEEEEecC
Confidence 5799999998642 4789999997543
No 79
>PLN02740 Alcohol dehydrogenase-like
Probab=25.99 E-value=63 Score=30.22 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=19.4
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|+..
T Consensus 73 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGVE---------DLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCCC---------cCCCCCEEEec
Confidence 5799999998642 47999999864
No 80
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.97 E-value=81 Score=28.48 Aligned_cols=25 Identities=40% Similarity=0.668 Sum_probs=19.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 225 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 225 (252)
..|+|+++|++.. .+++||+|+...
T Consensus 62 ~~G~V~~vG~~v~---------~~~~Gd~V~~~~ 86 (339)
T cd08239 62 PAGVVVAVGPGVT---------HFRVGDRVMVYH 86 (339)
T ss_pred ceEEEEEECCCCc---------cCCCCCEEEECC
Confidence 5799999998652 479999998643
No 81
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=25.86 E-value=66 Score=29.81 Aligned_cols=24 Identities=38% Similarity=0.628 Sum_probs=19.4
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|+..
T Consensus 64 ~~G~V~~vG~~v~---------~~~vGdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGVT---------SVKPGDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCCc---------cCCCCCEEEEc
Confidence 5799999998652 47999999864
No 82
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=25.83 E-value=57 Score=30.23 Aligned_cols=24 Identities=58% Similarity=0.725 Sum_probs=19.5
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 64 ~~G~V~~vG~~v--------~~~~vGdrV~~~ 87 (368)
T cd08300 64 GAGIVESVGEGV--------TSVKPGDHVIPL 87 (368)
T ss_pred eeEEEEEeCCCC--------ccCCCCCEEEEc
Confidence 579999999875 247999999864
No 83
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=25.81 E-value=58 Score=29.43 Aligned_cols=24 Identities=42% Similarity=0.580 Sum_probs=19.5
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 62 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 85 (339)
T cd08239 62 PAGVVVAVGPGV--------THFRVGDRVMVY 85 (339)
T ss_pred ceEEEEEECCCC--------ccCCCCCEEEEC
Confidence 579999999875 247999999864
No 84
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=25.39 E-value=29 Score=33.68 Aligned_cols=53 Identities=32% Similarity=0.307 Sum_probs=36.4
Q ss_pred CCeEEEEecc-------cccccceeEEecCCCCC----CCcceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 65 GDRVLVKIKT-------VEEKTDGGIFLPSAAQT----KPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 65 gDRVLVk~~~-------~e~kT~gGI~LP~sa~~----k~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
-|-|||+... ...-+.|+|..+.-.+. -...|+|..||++. ..+|+||+|...
T Consensus 29 p~eVlv~i~a~GICGSDvHy~~~G~ig~~v~k~PmvlGHEssGiV~evG~~V--------k~LkVGDrVaiE 92 (354)
T KOG0024|consen 29 PDEVLVAIKAVGICGSDVHYYTHGRIGDFVVKKPMVLGHESSGIVEEVGDEV--------KHLKVGDRVAIE 92 (354)
T ss_pred CCEEEEEeeeEEecCccchhhccCCcCccccccccccccccccchhhhcccc--------cccccCCeEEec
Confidence 3667777542 34567777777642211 23579999999986 479999999874
No 85
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=25.29 E-value=69 Score=29.79 Aligned_cols=24 Identities=38% Similarity=0.516 Sum_probs=19.6
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|...
T Consensus 63 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGVT---------SVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCCc---------cCCCCCEEEEc
Confidence 5799999998652 47999999864
No 86
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=25.21 E-value=69 Score=29.48 Aligned_cols=23 Identities=43% Similarity=0.726 Sum_probs=19.0
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|..
T Consensus 62 ~~G~V~~vG~~v~---------~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGVT---------DVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCCc---------ccCCCCEEEE
Confidence 5799999998652 4799999986
No 87
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=24.83 E-value=62 Score=28.93 Aligned_cols=25 Identities=48% Similarity=0.702 Sum_probs=19.9
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
...|+|+++|++. ...++||+|+..
T Consensus 65 e~~G~V~~vG~~v--------~~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEV--------TLFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCC--------CCCCCCCEEEEc
Confidence 3579999999874 247899999964
No 88
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=24.75 E-value=71 Score=29.58 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=18.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|++
T Consensus 71 ~~G~Vv~vG~~v~---------~~~~Gd~V~~ 93 (357)
T PLN02514 71 VVGEVVEVGSDVS---------KFTVGDIVGV 93 (357)
T ss_pred eeEEEEEECCCcc---------cccCCCEEEE
Confidence 5799999998752 4789999975
No 89
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=24.62 E-value=1.6e+02 Score=26.07 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=18.3
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. ..++||+|+.
T Consensus 64 ~~G~v~~~G~~v~---------~~~~Gd~V~~ 86 (338)
T cd08254 64 IAGTVVEVGAGVT---------NFKVGDRVAV 86 (338)
T ss_pred ccEEEEEECCCCc---------cCCCCCEEEE
Confidence 5799999997542 4689999986
No 90
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=24.53 E-value=63 Score=30.06 Aligned_cols=24 Identities=58% Similarity=0.613 Sum_probs=19.6
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|...
T Consensus 63 ~~G~V~~vG~~v--------~~~~~GdrV~~~ 86 (368)
T TIGR02818 63 GAGIVEAVGEGV--------TSVKVGDHVIPL 86 (368)
T ss_pred cEEEEEEECCCC--------ccCCCCCEEEEc
Confidence 579999999875 257999999864
No 91
>PLN02740 Alcohol dehydrogenase-like
Probab=24.25 E-value=58 Score=30.45 Aligned_cols=24 Identities=46% Similarity=0.565 Sum_probs=19.4
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 73 ~~G~V~~vG~~v--------~~~~vGdrV~~~ 96 (381)
T PLN02740 73 AAGIVESVGEGV--------EDLKAGDHVIPI 96 (381)
T ss_pred ceEEEEEeCCCC--------CcCCCCCEEEec
Confidence 579999999875 247999999853
No 92
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=24.25 E-value=63 Score=29.74 Aligned_cols=23 Identities=52% Similarity=0.742 Sum_probs=19.1
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 62 ~~G~V~~vG~~v--------~~~~~GdrV~~ 84 (358)
T TIGR03451 62 AAGVVEAVGEGV--------TDVAPGDYVVL 84 (358)
T ss_pred eEEEEEEeCCCC--------cccCCCCEEEE
Confidence 579999999875 24799999986
No 93
>PRK10083 putative oxidoreductase; Provisional
Probab=23.79 E-value=87 Score=28.15 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=18.6
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|+.
T Consensus 61 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 83 (339)
T PRK10083 61 FFGVIDAVGEGVD---------AARIGERVAV 83 (339)
T ss_pred eEEEEEEECCCCc---------cCCCCCEEEE
Confidence 5799999998642 4799999985
No 94
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=23.72 E-value=66 Score=29.77 Aligned_cols=23 Identities=35% Similarity=0.341 Sum_probs=18.9
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ...++||+|++
T Consensus 71 ~~G~Vv~vG~~v--------~~~~~Gd~V~~ 93 (357)
T PLN02514 71 VVGEVVEVGSDV--------SKFTVGDIVGV 93 (357)
T ss_pred eeEEEEEECCCc--------ccccCCCEEEE
Confidence 579999999875 24789999975
No 95
>PRK10083 putative oxidoreductase; Provisional
Probab=23.62 E-value=73 Score=28.65 Aligned_cols=23 Identities=35% Similarity=0.406 Sum_probs=18.8
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 61 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 83 (339)
T PRK10083 61 FFGVIDAVGEGV--------DAARIGERVAV 83 (339)
T ss_pred eEEEEEEECCCC--------ccCCCCCEEEE
Confidence 579999999874 24799999985
No 96
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=23.38 E-value=81 Score=28.70 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=18.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|+.
T Consensus 72 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 94 (351)
T cd08233 72 FSGVVVEVGSGVT---------GFKVGDRVVV 94 (351)
T ss_pred ceEEEEEeCCCCC---------CCCCCCEEEE
Confidence 5799999998642 4799999986
No 97
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=23.36 E-value=84 Score=28.06 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=19.7
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
...|+|+++|++.. .+++||+|+..
T Consensus 65 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 89 (336)
T TIGR02817 65 DAAGVVVAVGDEVT---------LFKPGDEVWYA 89 (336)
T ss_pred eeEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 35799999998642 47899999864
No 98
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=23.32 E-value=63 Score=29.90 Aligned_cols=24 Identities=50% Similarity=0.689 Sum_probs=19.3
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 63 ~~G~V~~vG~~v--------~~~~~GdrV~~~ 86 (365)
T cd08277 63 GAGIVESVGEGV--------TNLKPGDKVIPL 86 (365)
T ss_pred eeEEEEeeCCCC--------ccCCCCCEEEEC
Confidence 579999999875 247899999863
No 99
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=23.22 E-value=80 Score=28.52 Aligned_cols=24 Identities=38% Similarity=0.403 Sum_probs=19.4
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
...|+|+++|++. ...++||+|+.
T Consensus 61 e~~G~V~~~G~~~--------~~~~~Gd~V~~ 84 (345)
T cd08260 61 EFAGVVVEVGEDV--------SRWRVGDRVTV 84 (345)
T ss_pred ceeEEEEEECCCC--------ccCCCCCEEEE
Confidence 3579999999874 24799999986
No 100
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=23.09 E-value=77 Score=29.34 Aligned_cols=24 Identities=33% Similarity=0.612 Sum_probs=19.2
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+++|++.. .+++||+|+..
T Consensus 63 ~~G~V~~vG~~v~---------~~~~GdrV~~~ 86 (365)
T cd08277 63 GAGIVESVGEGVT---------NLKPGDKVIPL 86 (365)
T ss_pred eeEEEEeeCCCCc---------cCCCCCEEEEC
Confidence 5799999998653 47899999863
No 101
>PF01079 Hint: Hint module; InterPro: IPR001767 This domain identifies a group of cysteine peptidases correspond to MEROPS peptidase family C46 (clan CH). The type example is the Hedgehog protein from Drosophila melanogaster (Fruit fly). These are involved in intracellular signalling required for a variety of patterning events during development. The hedgehog family of proteins self process by a cysteine-dependent mechanism, which is a one-time autolytic cleavage. It is differentiated from a typical peptidase reaction by the fact that the newly-formed carboxyl group is esterified with cholesterol, rather than being left free. The three-dimensional structure of the autolytic domain of the hedgehog protein of D. melanogaster shows that it is formed from two divergent copies of a module that also occurs in inteins, called a Hint domain [,].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3K7H_B 3K7I_B 3K7G_B 1AT0_A 3MXW_A 3M1N_B 3HO5_H 2WFR_A 2WFQ_A 2WG3_B ....
Probab=22.67 E-value=1.2e+02 Score=27.17 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=15.3
Q ss_pred CCCCCeeee-cCCCCCEEEecCCCCc
Q 025446 205 DEEGNRKPL-SIAPGNTVMYSKYAGN 229 (252)
Q Consensus 205 ~~~G~~~p~-~Vk~GD~Vlf~kyaG~ 229 (252)
.+||..++| ++++||+|+-.+-.|.
T Consensus 21 ~~~G~~k~m~~L~iGD~Vla~d~~G~ 46 (217)
T PF01079_consen 21 LEDGGRKRMSDLKIGDRVLAVDSDGK 46 (217)
T ss_dssp BTTS-EEEGGG--TT-EEEEE-TTS-
T ss_pred eCCCCEeEHHHCCCCCEEEEecCCCc
Confidence 468888888 6999999999885553
No 102
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=22.47 E-value=86 Score=27.91 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.7
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
...|+|+++|++.. .+++||+|+..
T Consensus 61 e~~G~v~~vG~~v~---------~~~~Gd~V~~~ 85 (325)
T cd08264 61 EFAGVVEEVGDHVK---------GVKKGDRVVVY 85 (325)
T ss_pred ceeEEEEEECCCCC---------CCCCCCEEEEC
Confidence 35799999998652 47999999854
No 103
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=22.06 E-value=1.1e+02 Score=27.71 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.3
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
...|+|+++|++.. .+++||+|+.
T Consensus 61 e~~G~V~~~G~~~~---------~~~~Gd~V~~ 84 (345)
T cd08260 61 EFAGVVVEVGEDVS---------RWRVGDRVTV 84 (345)
T ss_pred ceeEEEEEECCCCc---------cCCCCCEEEE
Confidence 35799999998642 4799999986
No 104
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=22.00 E-value=77 Score=28.22 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=19.4
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ..+++||+|+..
T Consensus 62 ~~G~v~~vG~~v--------~~~~~Gd~V~~~ 85 (325)
T cd08264 62 FAGVVEEVGDHV--------KGVKKGDRVVVY 85 (325)
T ss_pred eeEEEEEECCCC--------CCCCCCCEEEEC
Confidence 579999999875 247999999854
No 105
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.76 E-value=88 Score=28.31 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=19.7
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
...|+|+++|++.. .+++||+|+..
T Consensus 62 e~~G~V~~vG~~v~---------~~~~Gd~V~~~ 86 (340)
T TIGR00692 62 EVAGEVVGIGPGVE---------GIKVGDYVSVE 86 (340)
T ss_pred ceEEEEEEECCCCC---------cCCCCCEEEEC
Confidence 36899999998642 47999999873
No 106
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=21.64 E-value=1.1e+02 Score=26.49 Aligned_cols=25 Identities=40% Similarity=0.660 Sum_probs=19.7
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
...|+|+++|++. ...++||+|+..
T Consensus 27 e~~G~V~~vG~~v--------~~~~~Gd~V~~~ 51 (277)
T cd08255 27 SSVGRVVEVGSGV--------TGFKPGDRVFCF 51 (277)
T ss_pred ceeEEEEEeCCCC--------CCCCCCCEEEec
Confidence 4679999999864 236899999875
No 107
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=21.24 E-value=79 Score=28.78 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=18.9
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ..+++||+|+.
T Consensus 72 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 94 (351)
T cd08233 72 FSGVVVEVGSGV--------TGFKVGDRVVV 94 (351)
T ss_pred ceEEEEEeCCCC--------CCCCCCCEEEE
Confidence 579999999874 24799999986
No 108
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=21.15 E-value=76 Score=28.74 Aligned_cols=24 Identities=42% Similarity=0.560 Sum_probs=19.4
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEee
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIYS 125 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~ 125 (252)
..|+|+++|++. ...++||+|+..
T Consensus 63 ~~G~V~~vG~~v--------~~~~~Gd~V~~~ 86 (340)
T TIGR00692 63 VAGEVVGIGPGV--------EGIKVGDYVSVE 86 (340)
T ss_pred eEEEEEEECCCC--------CcCCCCCEEEEC
Confidence 579999999874 247999999863
No 109
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=20.92 E-value=3.5e+02 Score=21.82 Aligned_cols=43 Identities=28% Similarity=0.507 Sum_probs=29.7
Q ss_pred EEEcCeeeEEEeccceeeeeccCccceeeeeCCeEEEEEecccccccceEEeecccccCCcceeEEEecCC
Q 025446 132 LEFNGANHLILREDDVVGILETDEIKDLKPLNDRVFIKVAEAEETTAGGLLLTEASKEKPSIGMVIAVGPG 202 (252)
Q Consensus 132 v~~~g~~~~il~e~DIlavlet~~~~~l~PL~DRVLVk~~e~e~kT~gGI~Lp~sakek~~~G~VVAVGpG 202 (252)
+.++|++|+++|.+| +.+.-+ +-++|+++- |.++..||++.+.
T Consensus 62 i~l~G~KY~~l~~d~------------------~~i~~k-----k~~~Gi~i~-----kT~~~ivi~~y~e 104 (127)
T cd00148 62 LTLGGQKYMVIRADD------------------RSIYGK-----KGAGGVVIV-----KTKQALVIGMYEE 104 (127)
T ss_pred EEECCeEEEEEecCc------------------cEEEee-----eCCCeEEEE-----ECCCEEEEEEcCC
Confidence 889999999999887 222111 123788775 3467888888764
No 110
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=20.63 E-value=78 Score=28.54 Aligned_cols=24 Identities=46% Similarity=0.500 Sum_probs=19.0
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
...|+|+++|++. ...++||+|+.
T Consensus 60 e~~G~V~~vG~~v--------~~~~~Gd~V~~ 83 (345)
T cd08287 60 EFVGVVEEVGSEV--------TSVKPGDFVIA 83 (345)
T ss_pred ceEEEEEEeCCCC--------CccCCCCEEEe
Confidence 3579999999874 24789999985
No 111
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=20.61 E-value=1e+02 Score=27.17 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=20.4
Q ss_pred CcceeEEEecCCccCCCCCeeeecCCCCCEEEecC
Q 025446 191 PSIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYSK 225 (252)
Q Consensus 191 ~~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~k 225 (252)
...|+|+++|++.. .+++||+|+...
T Consensus 65 e~~G~V~~~G~~v~---------~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGVK---------GLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCCC---------CCCCCCEEEecc
Confidence 35899999998642 378999998754
No 112
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=20.54 E-value=1.5e+02 Score=25.95 Aligned_cols=24 Identities=42% Similarity=0.732 Sum_probs=18.9
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEec
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMYS 224 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf~ 224 (252)
..|+|+.+|++.. .+++||+|+..
T Consensus 65 ~~G~v~~~G~~~~---------~~~~Gd~V~~~ 88 (342)
T cd08266 65 GAGVVEAVGPGVT---------NVKPGQRVVIY 88 (342)
T ss_pred eEEEEEEeCCCCC---------CCCCCCEEEEc
Confidence 5799999997542 47899999865
No 113
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=20.46 E-value=96 Score=27.84 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.8
Q ss_pred cceeEEEecCCccCCCCCeeeecCCCCCEEEe
Q 025446 192 SIGMVIAVGPGPLDEEGNRKPLSIAPGNTVMY 223 (252)
Q Consensus 192 ~~G~VVAVGpG~~~~~G~~~p~~Vk~GD~Vlf 223 (252)
..|+|+++|++.. .+++||+|+.
T Consensus 62 ~~G~V~~vG~~v~---------~~~~Gd~V~~ 84 (347)
T cd05278 62 FVGEVVEVGSDVK---------RLKPGDRVSV 84 (347)
T ss_pred eEEEEEEECCCcc---------ccCCCCEEEe
Confidence 5799999998642 4799999986
No 114
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=20.31 E-value=87 Score=27.68 Aligned_cols=26 Identities=35% Similarity=0.455 Sum_probs=20.4
Q ss_pred CcceeEEEecCceeeCCCceeeeccCCcEEEeec
Q 025446 93 PQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSK 126 (252)
Q Consensus 93 ~~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~~k 126 (252)
...|+|+++|++. ...++||+|+...
T Consensus 65 e~~G~V~~~G~~v--------~~~~~Gd~V~~~~ 90 (324)
T cd08292 65 EAVGVVDAVGEGV--------KGLQVGQRVAVAP 90 (324)
T ss_pred ceEEEEEEeCCCC--------CCCCCCCEEEecc
Confidence 3589999999874 2478999998754
No 115
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=20.10 E-value=84 Score=28.20 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=18.9
Q ss_pred cceeEEEecCceeeCCCceeeeccCCcEEEe
Q 025446 94 QAGEVVAVGEGKTVGKAKLDISVKPGTQVIY 124 (252)
Q Consensus 94 ~~G~VVAVG~G~~~~~~~vp~~VkvGD~Vl~ 124 (252)
..|+|+++|++. ...++||+|+.
T Consensus 62 ~~G~V~~vG~~v--------~~~~~Gd~V~~ 84 (347)
T cd05278 62 FVGEVVEVGSDV--------KRLKPGDRVSV 84 (347)
T ss_pred eEEEEEEECCCc--------cccCCCCEEEe
Confidence 579999999874 24799999986
Done!