Query 025448
Match_columns 252
No_of_seqs 170 out of 245
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 05:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025448.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025448hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 100.0 1.1E-31 2.4E-36 249.4 22.6 216 22-241 54-318 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.8 1.5E-20 3.2E-25 142.2 7.0 83 23-109 2-90 (90)
3 PF12776 Myb_DNA-bind_3: Myb/S 98.6 1.3E-07 2.8E-12 72.3 7.6 69 24-95 1-72 (96)
4 smart00595 MADF subfamily of S 98.5 9E-08 2E-12 72.4 4.3 69 33-110 2-85 (89)
5 PF13873 Myb_DNA-bind_5: Myb/S 98.2 5.7E-06 1.2E-10 61.5 7.5 70 21-93 1-77 (78)
6 PF10545 MADF_DNA_bdg: Alcohol 98.1 1.2E-06 2.7E-11 64.4 1.6 70 33-109 1-85 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.8 3.8E-05 8.3E-10 52.5 5.0 47 23-85 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.3 0.00039 8.4E-09 49.1 4.8 43 25-85 1-44 (60)
9 smart00717 SANT SANT SWI3, AD 97.3 0.0004 8.8E-09 45.3 4.5 47 23-86 2-48 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.1 0.00097 2.1E-08 42.9 4.7 45 24-85 1-45 (45)
11 PLN03212 Transcription repress 95.7 0.028 6E-07 51.8 6.4 54 19-90 75-128 (249)
12 PLN03091 hypothetical protein; 95.4 0.042 9.1E-07 54.3 7.0 54 19-90 64-117 (459)
13 PF04504 DUF573: Protein of un 95.3 0.093 2E-06 41.6 7.4 67 23-94 5-71 (98)
14 PLN03212 Transcription repress 94.3 0.098 2.1E-06 48.3 5.8 50 19-84 22-71 (249)
15 KOG0457 Histone acetyltransfer 90.7 9 0.0002 38.1 14.3 51 21-95 71-121 (438)
16 PLN03091 hypothetical protein; 90.6 0.35 7.5E-06 48.0 4.6 49 19-83 11-59 (459)
17 KOG1279 Chromatin remodeling f 89.8 0.43 9.2E-06 48.1 4.6 49 18-84 249-297 (506)
18 COG5259 RSC8 RSC chromatin rem 89.2 0.61 1.3E-05 46.7 5.0 46 21-84 278-323 (531)
19 KOG0051 RNA polymerase I termi 82.9 2.2 4.8E-05 44.0 5.4 68 20-95 434-517 (607)
20 PRK13923 putative spore coat p 82.8 3.3 7E-05 36.4 5.7 58 20-90 3-62 (170)
21 TIGR02894 DNA_bind_RsfA transc 82.2 3.2 7E-05 36.2 5.4 60 20-91 2-62 (161)
22 PF03353 Lin-8: Ras-mediated v 79.3 4.5 9.6E-05 37.7 5.7 80 24-106 19-112 (313)
23 KOG0049 Transcription factor, 75.9 5 0.00011 42.2 5.4 56 17-88 248-303 (939)
24 KOG4348 Adaptor protein CMS/SE 74.2 13 0.00028 37.5 7.6 55 179-241 569-623 (627)
25 KOG0048 Transcription factor, 72.8 12 0.00026 33.7 6.6 57 18-92 58-115 (238)
26 TIGR01557 myb_SHAQKYF myb-like 68.6 16 0.00034 26.3 5.1 48 21-83 2-52 (57)
27 PF15444 TMEM247: Transmembran 61.0 12 0.00026 33.6 3.9 14 204-217 101-114 (218)
28 PF13404 HTH_AsnC-type: AsnC-t 48.1 29 0.00063 23.3 3.4 24 53-85 19-42 (42)
29 KOG0049 Transcription factor, 39.4 55 0.0012 34.8 5.3 50 18-84 356-405 (939)
30 PF06576 DUF1133: Protein of u 39.2 61 0.0013 28.7 4.8 27 55-85 134-160 (176)
31 PF04568 IATP: Mitochondrial A 34.9 2.1E+02 0.0045 23.1 6.9 26 202-227 67-92 (100)
32 COG1422 Predicted membrane pro 33.3 3.1E+02 0.0067 24.9 8.4 52 185-238 61-120 (201)
33 PRK13271 treA trehalase; Provi 32.4 37 0.0008 35.0 2.8 21 20-40 519-539 (569)
34 smart00586 ZnF_DBF Zinc finger 32.1 21 0.00045 25.4 0.7 38 74-111 8-45 (49)
35 KOG4661 Hsp27-ERE-TATA-binding 32.0 1E+02 0.0022 32.5 5.7 21 209-230 665-685 (940)
36 KOG0048 Transcription factor, 30.2 51 0.0011 29.6 3.1 45 23-83 10-54 (238)
37 PF13767 DUF4168: Domain of un 29.4 2.4E+02 0.0051 20.9 6.4 47 186-238 4-50 (78)
38 PF07227 DUF1423: Protein of u 29.4 2.5E+02 0.0053 28.4 7.8 52 180-234 368-424 (446)
39 KOG0050 mRNA splicing protein 29.2 47 0.001 34.2 2.8 23 52-82 28-50 (617)
40 PF12037 DUF3523: Domain of un 27.2 3.2E+02 0.0069 25.9 7.8 49 186-234 133-182 (276)
41 PF09420 Nop16: Ribosome bioge 26.8 81 0.0018 26.8 3.6 16 70-85 148-163 (164)
42 PF05278 PEARLI-4: Arabidopsis 26.8 3.1E+02 0.0068 25.9 7.6 22 191-212 175-196 (269)
43 PF04231 Endonuclease_1: Endon 22.2 2.1E+02 0.0046 25.8 5.5 51 182-232 157-207 (218)
44 KOG2264 Exostosin EXT1L [Signa 22.1 4.1E+02 0.0088 28.3 8.0 59 179-242 79-137 (907)
45 PF03342 Rhabdo_M1: Rhabdoviru 21.9 2.2E+02 0.0047 25.9 5.3 64 184-252 71-135 (219)
46 PRK08476 F0F1 ATP synthase sub 21.5 4.7E+02 0.01 21.6 7.9 46 195-240 87-132 (141)
47 PF15419 LNP1: Leukemia NUP98 21.2 99 0.0021 27.4 3.0 13 185-197 107-119 (177)
48 KOG0602 Neutral trehalase [Car 20.8 80 0.0017 32.9 2.7 36 7-42 529-569 (600)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=100.00 E-value=1.1e-31 Score=249.44 Aligned_cols=216 Identities=33% Similarity=0.443 Sum_probs=150.3
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC----CC
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP 97 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~----~~ 97 (252)
.++|+.+||++||++|+++|..|+++++++++|++||.++... +++||+.||++||+||+|+||++|.+. ..
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~ 129 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG 129 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 7999999999999999999999999999999999999977753 588999999999999999999999986 47
Q ss_pred CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CC-----CC---CcC
Q 025448 98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GR-----SV---STE 143 (252)
Q Consensus 98 s~W~ffd~mD~Llg-~~~~~---------~~~p~~~~~~~----~~~p~~~-----------~~-~~-----~~---~~~ 143 (252)
++|+||+.||.++. ..++. ...|.++.... ..+|... .+ .+ .. ...
T Consensus 130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (345)
T KOG4282|consen 130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV 209 (345)
T ss_pred ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence 89999999999997 22210 01111110000 0000000 00 00 00 000
Q ss_pred CCC------CCCCCCCCCCCCCh-hhhhhhhcccccccCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Q 025448 144 NDN------LSSDGEADDDGDDD-EIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE 215 (252)
Q Consensus 144 ~~~------~~sd~~~~~~~~~~-~~~~~k~~r~~~~~~~~~~~~~ela~ai~~f~e~yer~E-~~K~~~~~elEk~Rme 215 (252)
.+. .+++.++..+...+ .....++.+........+..++++++++.+|+++|+++| ..++++|.++|++||+
T Consensus 210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~ 289 (345)
T KOG4282|consen 210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME 289 (345)
T ss_pred CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence 000 01111111111110 011111111221222346689999999999999999999 9999999999999999
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHHhhcc
Q 025448 216 FI---KDVECERMNMFMGAQLEIQKSKRK 241 (252)
Q Consensus 216 f~---kdlE~~r~~~~~~~Q~ei~~~~~~ 241 (252)
|+ +++|++++++++++|++|..|+..
T Consensus 290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~ 318 (345)
T KOG4282|consen 290 EIERNKELELARQERIQETQLEIRSIKAI 318 (345)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999999999999988754
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.82 E-value=1.5e-20 Score=142.20 Aligned_cols=83 Identities=35% Similarity=0.719 Sum_probs=54.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHh--hhc-CCCCch-hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC--C
Q 025448 23 DCWSEGATGTLIEAWGDRYVR--LNR-GHLRQK-DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--P 96 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~q--l~r-g~lr~k-~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~--~ 96 (252)
..||++||.+||++|++.+.+ +.. ++.+++ .|++||+.|++++ +.+|+.||++||++|+++|++++.+. .
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G----~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~ 77 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHG----YNRTPEQCRNKWKNLKKKYKKIKDRNKKS 77 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHHHCSSSSSS--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 589999999999999996544 443 577776 8999999999763 67999999999999999999999986 4
Q ss_pred CCCCcchHHHHHh
Q 025448 97 PSKWPFYYRLDSL 109 (252)
Q Consensus 97 ~s~W~ffd~mD~L 109 (252)
+++|+||+.||.|
T Consensus 78 ~~~w~~f~~md~i 90 (90)
T PF13837_consen 78 GSSWPYFDEMDEI 90 (90)
T ss_dssp --S---TT-----
T ss_pred CCcCcCHHHHhcC
Confidence 5799999999987
No 3
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.63 E-value=1.3e-07 Score=72.26 Aligned_cols=69 Identities=30% Similarity=0.484 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhc---CCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC
Q 025448 24 CWSEGATGTLIEAWGDRYVRLNR---GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql~r---g~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~ 95 (252)
.||+..+..||+++-+.-..-++ +.++...|..|+.+++++.+ ...|..||+||++.||+.|+..+.-.
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~---~~~t~~qlknk~~~lk~~y~~~~~l~ 72 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTG---LNYTKKQLKNKWKTLKKDYRIWKELR 72 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhC---CcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999887555443 56777889999999999653 56899999999999999999988643
No 4
>smart00595 MADF subfamily of SANT domain.
Probab=98.54 E-value=9e-08 Score=72.45 Aligned_cols=69 Identities=30% Similarity=0.530 Sum_probs=53.1
Q ss_pred HHHHHhhHHHhh-------hcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC------C--C
Q 025448 33 LIEAWGDRYVRL-------NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP------P--P 97 (252)
Q Consensus 33 LLdawger~~ql-------~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~------~--~ 97 (252)
||+++...-.-. .....+...|.+||..|+. |..+|+.||++|+..|+.+..+. + +
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~---------~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~ 72 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL---------SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKK 72 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc---------CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 677777653222 2334455689999999963 89999999999999999987542 1 5
Q ss_pred CCCcchHHHHHhh
Q 025448 98 SKWPFYYRLDSLI 110 (252)
Q Consensus 98 s~W~ffd~mD~Ll 110 (252)
+.|.||+.|..|-
T Consensus 73 ~~w~~~~~m~FL~ 85 (89)
T smart00595 73 SKWEYFDRLSFLR 85 (89)
T ss_pred CCchhhHhhhhHH
Confidence 8999999998875
No 5
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.23 E-value=5.7e-06 Score=61.55 Aligned_cols=70 Identities=29% Similarity=0.298 Sum_probs=55.3
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhc-CC------CCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 025448 21 REDCWSEGATGTLIEAWGDRYVRLNR-GH------LRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (252)
Q Consensus 21 r~~~WSe~eT~~LLdawger~~ql~r-g~------lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~ 93 (252)
|...||.+|..+||+....+...+.. .+ .+...|++|+..||+..+ ..+|..||+.++++||..=|+.-.
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~---~~Rs~~~lkkkW~nlk~~~Kk~~~ 77 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGP---GKRSWKQLKKKWKNLKSKAKKKLA 77 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHHHHHhc
Confidence 45689999999999998886555432 21 234679999999999643 279999999999999998887654
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=98.09 E-value=1.2e-06 Score=64.44 Aligned_cols=70 Identities=27% Similarity=0.486 Sum_probs=51.9
Q ss_pred HHHHHhhHHHhhh-------cCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC--------CC
Q 025448 33 LIEAWGDRYVRLN-------RGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP--------PP 97 (252)
Q Consensus 33 LLdawger~~ql~-------rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~--------~~ 97 (252)
||++|...-.-.+ ...++...|++||..++.. .+..+|+.+|.+|+..|+.++.+. ..
T Consensus 1 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aw~~Ia~~l~~~-------~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~ 73 (85)
T PF10545_consen 1 LIELVKKHPCLWDPSHPDYKNRQLREEAWQEIARELGKE-------FSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYV 73 (85)
T ss_pred CHHHHhhCHHhhCCCCcccCCHHHHHHHHHHHHHHHccc-------hhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 5666666433322 2334567799999999642 468899999999999999988653 36
Q ss_pred CCCcchHHHHHh
Q 025448 98 SKWPFYYRLDSL 109 (252)
Q Consensus 98 s~W~ffd~mD~L 109 (252)
++|.||+.|.-|
T Consensus 74 ~~~~~~~~l~FL 85 (85)
T PF10545_consen 74 PTWSYYEELSFL 85 (85)
T ss_pred CccHHHHHCcCC
Confidence 899999999754
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.83 E-value=3.8e-05 Score=52.54 Aligned_cols=47 Identities=28% Similarity=0.502 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
..||.+|...|+++....-. ..|..||..|. ..||..||++++.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~-------~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP-------GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS-------SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC-------CCCCHHHHHHHHHhhC
Confidence 37999999999998765321 17999999995 1489999999998874
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.34 E-value=0.00039 Score=49.13 Aligned_cols=43 Identities=35% Similarity=0.730 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HH
Q 025448 25 WSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LK 85 (252)
Q Consensus 25 WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LK 85 (252)
||.+|...|+..+... |+ .|..||..|. .||..||++|+.+ |+
T Consensus 1 WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l~--------~Rt~~~~~~r~~~~l~ 44 (60)
T PF13921_consen 1 WTKEEDELLLELVKKY------GN----DWKKIAEHLG--------NRTPKQCRNRWRNHLR 44 (60)
T ss_dssp S-HHHHHHHHHHHHHH------TS-----HHHHHHHST--------TS-HHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHH------Cc----CHHHHHHHHC--------cCCHHHHHHHHHHHCc
Confidence 9999999999998874 22 6999999984 3899999999998 64
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.34 E-value=0.0004 Score=45.29 Aligned_cols=47 Identities=28% Similarity=0.499 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
..||.+|...|+.+....-. .+|..||..|. .+|..||++++.+|.+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~--------~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP--------GRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC--------CCCHHHHHHHHHHHcC
Confidence 47999999999988764321 47999999995 4899999999988764
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=97.14 E-value=0.00097 Score=42.92 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
.||.+|...|+.+....-. ..|..||..|.. ||..||++++.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~--------rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG--------RTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC--------CCHHHHHHHHHHhC
Confidence 4999999999988775421 469999999942 89999999988763
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=95.70 E-value=0.028 Score=51.78 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKk 90 (252)
......||.+|-..||+.+.. -| ..|..||..|. .||+.||||++.++.++...
T Consensus 75 ~I~kgpWT~EED~lLlel~~~------~G----nKWs~IAk~Lp--------GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 75 SVKRGGITSDEEDLILRLHRL------LG----NRWSLIAGRIP--------GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred hcccCCCChHHHHHHHHHHHh------cc----ccHHHHHhhcC--------CCCHHHHHHHHHHHHhHHHH
Confidence 456679999999999987533 12 24999999883 48999999999987666533
No 12
>PLN03091 hypothetical protein; Provisional
Probab=95.42 E-value=0.042 Score=54.33 Aligned_cols=54 Identities=22% Similarity=0.291 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKk 90 (252)
......||.+|-..||+.+.. -| ..|..||..|. .||+.||||++..+-++|.+
T Consensus 64 ~IkKgpWT~EED~lLLeL~k~------~G----nKWskIAk~LP--------GRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 64 DLKRGTFSQQEENLIIELHAV------LG----NRWSQIAAQLP--------GRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred cccCCCCCHHHHHHHHHHHHH------hC----cchHHHHHhcC--------CCCHHHHHHHHHHHHHHHHH
Confidence 455678999999999988753 13 25999999883 48999999999998777755
No 13
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=95.32 E-value=0.093 Score=41.62 Aligned_cols=67 Identities=24% Similarity=0.258 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcC
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~ 94 (252)
-.||++.-.+||+..-+....- |.....+|..+.+.|..... ...|..|-..||..||++|.....+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~--G~~p~~d~~~f~~~vk~~l~---~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKT--GKSPQPDMNAFYDFVKGSLS---FDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhc--CCCCCccHHHHHHHHHHHcc---CCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4699999999999887764443 43333488888888887543 5578999999999999999998776
No 14
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.26 E-value=0.098 Score=48.25 Aligned_cols=50 Identities=14% Similarity=0.355 Sum_probs=37.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
+-+...||.+|-..|+.+-... | ...|..||..|. ..||+.|||.|+.+.
T Consensus 22 glKRg~WT~EEDe~L~~lV~ky------G---~~nW~~IAk~~g-------~gRT~KQCReRW~N~ 71 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKE------G---EGRWRSLPKRAG-------LLRCGKSCRLRWMNY 71 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------C---cccHHHHHHhhh-------cCCCcchHHHHHHHh
Confidence 4566789999999998754322 2 235999998874 348999999999743
No 15
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.72 E-value=9 Score=38.14 Aligned_cols=51 Identities=24% Similarity=0.500 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC
Q 025448 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (252)
Q Consensus 21 r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~ 95 (252)
-...||..|-.+||++-. .++-|| |++||+.|- .||..+|+. -|.+.-..+
T Consensus 71 ~~~~WtadEEilLLea~~----t~G~GN-----W~dIA~hIG--------tKtkeeck~-------hy~k~fv~s 121 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAE----TYGFGN-----WQDIADHIG--------TKTKEECKE-------HYLKHFVNS 121 (438)
T ss_pred CCCCCChHHHHHHHHHHH----HhCCCc-----HHHHHHHHc--------ccchHHHHH-------HHHHHHhcC
Confidence 346899999999999853 344455 999999995 279999964 555555443
No 16
>PLN03091 hypothetical protein; Provisional
Probab=90.62 E-value=0.35 Score=48.05 Aligned_cols=49 Identities=20% Similarity=0.371 Sum_probs=36.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
..+...||.+|-..|+++.... |. ..|..||..+. ..||+.|||.|+.+
T Consensus 11 klrKg~WTpEEDe~L~~~V~ky------G~---~nWs~IAk~~g-------~gRT~KQCRERW~N 59 (459)
T PLN03091 11 KLRKGLWSPEEDEKLLRHITKY------GH---GCWSSVPKQAG-------LQRCGKSCRLRWIN 59 (459)
T ss_pred CCcCCCCCHHHHHHHHHHHHHh------Cc---CCHHHHhhhhc-------cCcCcchHhHHHHh
Confidence 3456689999999998776422 22 36999998763 34899999999873
No 17
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=89.84 E-value=0.43 Score=48.13 Aligned_cols=49 Identities=33% Similarity=0.491 Sum_probs=38.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
+..-+..||+.||++||++-.- ...+|..||..|. .||..||--||=.|
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~----------y~ddW~kVa~hVg--------~ks~eqCI~kFL~L 297 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEM----------YGDDWNKVADHVG--------TKSQEQCILKFLRL 297 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHH----------hcccHHHHHhccC--------CCCHHHHHHHHHhc
Confidence 4556779999999999987432 2347999999995 38999999988665
No 18
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.24 E-value=0.61 Score=46.73 Aligned_cols=46 Identities=33% Similarity=0.465 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 21 r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
+...||.+|+++||+.-... ..+|..||..|.. ||..||--+|=.|
T Consensus 278 ~dk~WS~qE~~LLLEGIe~y----------gDdW~kVA~HVgt--------Kt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMY----------GDDWDKVARHVGT--------KTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHh----------hhhHHHHHHHhCC--------CCHHHHHHHHHcC
Confidence 56699999999998753221 2379999999963 8999999888766
No 19
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=82.86 E-value=2.2 Score=43.96 Aligned_cols=68 Identities=18% Similarity=0.353 Sum_probs=50.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHH---hhh--------c----CCCCchh-HHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYV---RLN--------R----GHLRQKD-WKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~---ql~--------r----g~lr~k~-W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
.....||-+|...||++..+.+. |.. + +.|...+ |-.|++.+- .++..|||.|+-.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~--------TR~~~qCr~Kw~k 505 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLG--------TRSRIQCRYKWYK 505 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhc--------CCCcchHHHHHHH
Confidence 46679999999999999987544 332 1 1233333 999999442 3789999999999
Q ss_pred HHHHHHHHhcCC
Q 025448 84 LKKKYKIEKAKP 95 (252)
Q Consensus 84 LKKrYKkeK~~~ 95 (252)
|-..+=.-+.+.
T Consensus 506 l~~~~s~n~~~~ 517 (607)
T KOG0051|consen 506 LTTSPSFNKRQE 517 (607)
T ss_pred HHhhHHhhcccc
Confidence 999887766653
No 20
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=82.77 E-value=3.3 Score=36.40 Aligned_cols=58 Identities=28% Similarity=0.559 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhh-hcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHH-HHHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI-DTLKKKYKI 90 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql-~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKi-d~LKKrYKk 90 (252)
.+.++||.++-.+|-+++ +.. ..|+.+-..+++|+..++ +|..+|.-++ -.++++|..
T Consensus 3 ~rqdawt~e~d~llae~v----l~~i~eg~tql~afe~~g~~L~---------rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVV----LRHIREGGTQLKAFEEVGDALK---------RTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred chhhhhhhHHHHHHHHHH----HHHHhccchHHHHHHHHHHHHh---------hhHHHHHhHHHHHHHHHHHH
Confidence 467899999999985544 433 357766677999999886 6999999999 456777765
No 21
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=82.16 E-value=3.2 Score=36.16 Aligned_cols=60 Identities=25% Similarity=0.463 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIE 91 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LKKrYKke 91 (252)
.|-+.||+++-++|-++-= ++ +..|+..-.-++||++.+| ||..=|.-||.+ ++|+|..+
T Consensus 2 ~RQDAWT~eeDlLLAEtVL-rh--IReG~TQL~AFeEvg~~L~---------RTsAACGFRWNs~VRkqY~~~ 62 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVL-RH--IREGSTQLSAFEEVGRALN---------RTAAACGFRWNAYVRKQYEEA 62 (161)
T ss_pred ccccccccHHHHHHHHHHH-HH--HhcchHHHHHHHHHHHHHc---------ccHHHhcchHHHHHHHHHHHH
Confidence 4678999999998877642 22 2446655567999999996 799999999985 67889886
No 22
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=79.28 E-value=4.5 Score=37.68 Aligned_cols=80 Identities=15% Similarity=0.166 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHhhHHHhh-hcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH-----H-hcCCC
Q 025448 24 CWSEGATGTLIEAWGDRYVRL-NRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI-----E-KAKPP 96 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql-~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKk-----e-K~~~~ 96 (252)
.|...-..++|..-++.-.-. ..+.....+|+.||-.|-.|-| ...+..+++.=|.+-|...|. + +.+.+
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~~~~~~~~~~~~~v~v~vy~Rtg---~~~~~~~i~~~~~~aK~~Lr~~l~~~I~~~~l~ 95 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWKKKSRVPNEEWEEVAVEVYKRTG---KLVSVKHIRSIFKNAKDSLRRRLRKCIKKKKLS 95 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhhccCCccHHHHHHHHHHHHHHHh---hhcCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444444444444432222 4445556789999999998854 457888888888777776665 2 22222
Q ss_pred -------CCCCcchHHH
Q 025448 97 -------PSKWPFYYRL 106 (252)
Q Consensus 97 -------~s~W~ffd~m 106 (252)
-..|+||..|
T Consensus 96 ~~~~E~~L~~W~~Y~~~ 112 (313)
T PF03353_consen 96 PEETEEKLWKWELYPFI 112 (313)
T ss_pred HHHHHHHHHcCCccchh
Confidence 3579988755
No 23
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=75.93 E-value=5 Score=42.17 Aligned_cols=56 Identities=14% Similarity=0.269 Sum_probs=42.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 17 ~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
.+..+.+.||.+|...|+.+=.. .+...|+-||..+- .++++-||-.||.+=-+..
T Consensus 248 ~P~~nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~~Lg-------t~RS~yQC~~kF~t~~~~L 303 (939)
T KOG0049|consen 248 NPKWNKEHWSNEEVEKLKALAEA---------PKFVSWPMIALNLG-------TNRSSYQCMEKFKTEVSQL 303 (939)
T ss_pred CCccchhccChHHHHHHHHHHhc---------cccccHHHHHHHhC-------CCcchHHHHHHHHHHHHHH
Confidence 35788899999999998865332 23347999999984 4689999999998754443
No 24
>KOG4348 consensus Adaptor protein CMS/SETA [Signal transduction mechanisms]
Probab=74.20 E-value=13 Score=37.53 Aligned_cols=55 Identities=31% Similarity=0.352 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcc
Q 025448 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRK 241 (252)
Q Consensus 179 ~~~~ela~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~~ 241 (252)
+++.||-..|+.+-- =||..|-+|-.|||+.|-+ ||..++ |-.+.||||.+||.+
T Consensus 569 ~s~delr~qi~el~~---ive~lk~~~~kel~kl~~d----leeek~-mr~~lemei~~lkka 623 (627)
T KOG4348|consen 569 NSLDELRAQIIELLC---IVEALKKDHGKELEKLRKD----LEEEKT-MRSNLEMEIEKLKKA 623 (627)
T ss_pred hhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHH-HHhhhHhhHHHHHHH
Confidence 366677666665444 4788899999999999988 776654 566899999999964
No 25
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=72.84 E-value=12 Score=33.66 Aligned_cols=57 Identities=26% Similarity=0.350 Sum_probs=44.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH-HHHHHHHHh
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT-LKKKYKIEK 92 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~-LKKrYKkeK 92 (252)
+.-....||++|..+||.+.... || -|..||..| +.||+--.||=+.+ |||+++...
T Consensus 58 P~ikrg~fT~eEe~~Ii~lH~~~------GN----rWs~IA~~L--------PGRTDNeIKN~Wnt~lkkkl~~~~ 115 (238)
T KOG0048|consen 58 PDLKRGNFSDEEEDLIIKLHALL------GN----RWSLIAGRL--------PGRTDNEVKNHWNTHLKKKLLKMG 115 (238)
T ss_pred CCccCCCCCHHHHHHHHHHHHHH------Cc----HHHHHHhhC--------CCcCHHHHHHHHHHHHHHHHHHcC
Confidence 45566799999999999886542 22 299999998 55899888888765 588888766
No 26
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=68.56 E-value=16 Score=26.35 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=35.0
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhH---HHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW---KEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 21 r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W---~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
++..||+++-..+|+++.. +++| +| ..|++.|.. ...|..||+.-...
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~----~G~g-----~~a~pk~I~~~~~~------~~lT~~qV~SH~QK 52 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQK----LGGP-----DWATPKRILELMVV------DGLTRDQVASHLQK 52 (57)
T ss_pred CCCCCCHHHHHHHHHHHHH----hCCC-----cccchHHHHHHcCC------CCCCHHHHHHHHHH
Confidence 4678999999999998754 3332 47 789988763 22499999886553
No 27
>PF15444 TMEM247: Transmembrane protein 247
Probab=61.02 E-value=12 Score=33.61 Aligned_cols=14 Identities=57% Similarity=0.738 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhhh
Q 025448 204 KQMMELEKERLEFI 217 (252)
Q Consensus 204 ~~~~elEk~Rmef~ 217 (252)
...+||||.||||.
T Consensus 101 ~~emELEKvRMEFE 114 (218)
T PF15444_consen 101 NTEMELEKVRMEFE 114 (218)
T ss_pred chhhHHHHHHHHHH
Confidence 45579999999986
No 28
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=48.06 E-value=29 Score=23.26 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=19.4
Q ss_pred hHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 53 DWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 53 ~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
-|.+||+.|. .|...|..||..|+
T Consensus 19 s~~~la~~lg---------lS~~~v~~Ri~rL~ 42 (42)
T PF13404_consen 19 SYAELAEELG---------LSESTVRRRIRRLE 42 (42)
T ss_dssp -HHHHHHHHT---------S-HHHHHHHHHHHH
T ss_pred cHHHHHHHHC---------cCHHHHHHHHHHhC
Confidence 4889999995 58999999999885
No 29
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=39.42 E-value=55 Score=34.82 Aligned_cols=50 Identities=26% Similarity=0.546 Sum_probs=38.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
++..-..|+++|-..|+.|-.+. ..++|-.|-..| +.+++.|||.|.-+.
T Consensus 356 Psikhg~wt~~ED~~L~~AV~~Y---------g~kdw~k~R~~v--------PnRSdsQcR~RY~nv 405 (939)
T KOG0049|consen 356 PSVKHGRWTDQEDVLLVCAVSRY---------GAKDWAKVRQAV--------PNRSDSQCRERYTNV 405 (939)
T ss_pred ccccCCCCCCHHHHHHHHHHHHh---------CccchhhHHHhc--------CCccHHHHHHHHHHH
Confidence 45555689999999999875432 346898888888 568999999986553
No 30
>PF06576 DUF1133: Protein of unknown function (DUF1133); InterPro: IPR010557 This family consists of a number of hypothetical proteins from Escherichia coli O157:H7 and Salmonella typhi. The function of this family is unknown.
Probab=39.15 E-value=61 Score=28.74 Aligned_cols=27 Identities=30% Similarity=0.502 Sum_probs=21.8
Q ss_pred HHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 55 KEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 55 ~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
..+|+.++..+ +.-+-.||++||+.=-
T Consensus 134 ~~MA~eL~~~h----Pew~~~TC~~RI~~wL 160 (176)
T PF06576_consen 134 RKMAEELNEKH----PEWCLRTCRRRIDWWL 160 (176)
T ss_pred HHHHHHHhccC----CcccHHHHHHHHHHHH
Confidence 35899999754 7789999999999643
No 31
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=34.93 E-value=2.1e+02 Score=23.10 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 025448 202 KQKQMMELEKERLEFIKDVECERMNM 227 (252)
Q Consensus 202 K~~~~~elEk~Rmef~kdlE~~r~~~ 227 (252)
+.++...|++.|.+...|.+.++.+|
T Consensus 67 r~~EkEqL~~Lk~kl~~e~~~~~k~i 92 (100)
T PF04568_consen 67 RKKEKEQLKKLKEKLKEEIEHHRKEI 92 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778888888666666676663
No 32
>COG1422 Predicted membrane protein [Function unknown]
Probab=33.29 E-value=3.1e+02 Score=24.87 Aligned_cols=52 Identities=29% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHHHHHHHh
Q 025448 185 ARAILKFGEIYERIESAKQKQMMELEKERLEFI--------KDVECERMNMFMGAQLEIQKS 238 (252)
Q Consensus 185 a~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~--------kdlE~~r~~~~~~~Q~ei~~~ 238 (252)
..-+++|-=-+||++.- +++|.|+.+...|+. +.|+.+++||. +-|.|+.|.
T Consensus 61 ~~i~~~~liD~ekm~~~-qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~-~~Q~elmk~ 120 (201)
T COG1422 61 ITILQKLLIDQEKMKEL-QKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMM-DDQRELMKM 120 (201)
T ss_pred HHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33445555566777765 356777777766665 46677777755 567777654
No 33
>PRK13271 treA trehalase; Provisional
Probab=32.38 E-value=37 Score=34.98 Aligned_cols=21 Identities=14% Similarity=0.291 Sum_probs=18.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhH
Q 025448 20 GREDCWSEGATGTLIEAWGDR 40 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger 40 (252)
..++.||.+-++.||+.|+.+
T Consensus 519 q~GFGWTNgV~L~lL~~~~~~ 539 (569)
T PRK13271 519 QDGFGWTNGVTLKMLDLICPK 539 (569)
T ss_pred CCCcCcHHHHHHHHHHhcCcc
Confidence 568999999999999988775
No 34
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=32.14 E-value=21 Score=25.36 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCCCCcchHHHHHhhC
Q 025448 74 DIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG 111 (252)
Q Consensus 74 ~~QCrnKid~LKKrYKkeK~~~~~s~W~ffd~mD~Llg 111 (252)
-.-|+.|+++|..--...+-+.-...=..|..||.||.
T Consensus 8 CE~Cr~kfd~l~~Hi~s~~Hr~FA~~~~Nf~~lD~Li~ 45 (49)
T smart00586 8 CENCREKYDDLETHLLSEKHRRFAENNDNFQALDDLIS 45 (49)
T ss_pred cccHhHHHhhHHHHhccHHHHHHHcCchhHHHHHHHHH
Confidence 45699999999987777765542223356888898875
No 35
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=32.04 E-value=1e+02 Score=32.53 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=11.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 025448 209 LEKERLEFIKDVECERMNMFMG 230 (252)
Q Consensus 209 lEk~Rmef~kdlE~~r~~~~~~ 230 (252)
||+.|||.. -||++||.+...
T Consensus 665 LERErmErE-RLEreRM~ve~e 685 (940)
T KOG4661|consen 665 LERERMERE-RLERERMKVEEE 685 (940)
T ss_pred HHHHHHHHH-HHHHHHHHHHHh
Confidence 444444422 266777766544
No 36
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=30.24 E-value=51 Score=29.61 Aligned_cols=45 Identities=13% Similarity=0.275 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
-.||.+|-..|++. ++.. |.- -|.-||.... ..|++++||-|+-|
T Consensus 10 GpWt~EED~~L~~~-----V~~~-G~~---~W~~i~k~~g-------l~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRS-----IKSF-GKH---NGTALPKLAG-------LRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHH-----HHHh-CCC---CcchhhhhcC-------CCccchHHHHHhhc
Confidence 47999999998863 2221 111 5888888774 24789999999865
No 37
>PF13767 DUF4168: Domain of unknown function (DUF4168)
Probab=29.43 E-value=2.4e+02 Score=20.92 Aligned_cols=47 Identities=21% Similarity=0.183 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh
Q 025448 186 RAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKS 238 (252)
Q Consensus 186 ~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~ 238 (252)
.-|..|+++|..||.-+.+...+|.. . +-.-+..+|-.++|.+..++
T Consensus 4 ~el~~fA~A~~~ie~ir~~~~~~l~~-----~-~~~~~~~~l~~~a~~~~~~~ 50 (78)
T PF13767_consen 4 AELDQFARAVLEIEPIRQEYQQELQA-----A-EDPEEIQELQEEAQEEMVEA 50 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----c-cCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999988888777766 1 12345555666666665544
No 38
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=29.37 E-value=2.5e+02 Score=28.41 Aligned_cols=52 Identities=27% Similarity=0.219 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHHHHH
Q 025448 180 ACRELARAILKFGEIYERIESAKQKQMME-----LEKERLEFIKDVECERMNMFMGAQLE 234 (252)
Q Consensus 180 ~~~ela~ai~~f~e~yer~E~~K~~~~~e-----lEk~Rmef~kdlE~~r~~~~~~~Q~e 234 (252)
=|-.-|.-.|+=+|.|-||-.+|-+++.| +=|.|+. |.|.+|.+.|++.|+.
T Consensus 368 MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~l~---eaee~r~~~~eelk~~ 424 (446)
T PF07227_consen 368 MFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLRLN---EAEEERKKKFEELKVL 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhH---HHHHHHHHHHHHHHHH
Confidence 45567888899999999999999988765 4455555 8899999999887764
No 39
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=29.24 E-value=47 Score=34.23 Aligned_cols=23 Identities=39% Similarity=0.741 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHcccCCCCCCCChHHHHHHHH
Q 025448 52 KDWKEVAESVNSRENGVKPKKTDIQCKNRID 82 (252)
Q Consensus 52 k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid 82 (252)
+.|.+||.-++. +|..||+++|.
T Consensus 28 nqws~i~sll~~--------kt~rqC~~rw~ 50 (617)
T KOG0050|consen 28 NQWSRIASLLNR--------KTARQCKARWE 50 (617)
T ss_pred HHHHHHHHHHhh--------cchhHHHHHHH
No 40
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=27.23 E-value=3.2e+02 Score=25.87 Aligned_cols=49 Identities=16% Similarity=0.072 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Q 025448 186 RAILKFGEIYERIESAKQKQMMELEKERLEFI-KDVECERMNMFMGAQLE 234 (252)
Q Consensus 186 ~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~-kdlE~~r~~~~~~~Q~e 234 (252)
+.++.--|.+.|.|+.+.+.-.+|..+|+.-. .++||+|-.++.++..|
T Consensus 133 e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AE 182 (276)
T PF12037_consen 133 ELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAE 182 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55667778999999999999888887776644 67788887777777666
No 41
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=26.83 E-value=81 Score=26.82 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHHHHH
Q 025448 70 PKKTDIQCKNRIDTLK 85 (252)
Q Consensus 70 ~~kT~~QCrnKid~LK 85 (252)
+.-|+.||+.||...+
T Consensus 148 ~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 148 MQHTPGQLRRKIRKYK 163 (164)
T ss_pred ccCCHHHHHHHHHHhc
Confidence 4579999999988755
No 42
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=26.76 E-value=3.1e+02 Score=25.87 Aligned_cols=22 Identities=41% Similarity=0.360 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 025448 191 FGEIYERIESAKQKQMMELEKE 212 (252)
Q Consensus 191 f~e~yer~E~~K~~~~~elEk~ 212 (252)
|.|+.+-+|..+...+.++|+.
T Consensus 175 L~Ei~Ea~e~~~~~~~~e~eke 196 (269)
T PF05278_consen 175 LEEILEAKEIYDQHETREEEKE 196 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555554444444444433
No 43
>PF04231 Endonuclease_1: Endonuclease I; InterPro: IPR007346 Bacterial periplasmic or secreted (3.1.21.1 from EC) Escherichia coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown []. Other family members are known to be extracellular []. This family also includes a non-specific, Mg2+-activated ribonuclease precursor (Q03091 from SWISSPROT) [].; GO: 0004518 nuclease activity; PDB: 1OUO_A 1OUP_B 2IVK_C 2VND_A 2PU3_A 2G7F_A 2G7E_A.
Probab=22.15 E-value=2.1e+02 Score=25.84 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 025448 182 RELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQ 232 (252)
Q Consensus 182 ~ela~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q 232 (252)
..+|+|+-=|...|+-+.-.+.+..+=|+--+.+=.-+.|++|.+.|...|
T Consensus 157 GdIARa~fYm~~rY~~~~~~~~~~~~l~~W~~~DPVd~~E~~RN~~I~~~Q 207 (218)
T PF04231_consen 157 GDIARAYFYMATRYEGLPLSDQQRQLLLAWHKEDPVDEWERERNNRIYKIQ 207 (218)
T ss_dssp HHHHHHHHHHHHHC-T----HHHHHHHHHHHHHS---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCchhHHHHHHHHhhCCCCHHHHHHHHHHHHHh
Confidence 489999999999998888888777777788888888899999999988866
No 44
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=22.07 E-value=4.1e+02 Score=28.29 Aligned_cols=59 Identities=20% Similarity=0.203 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhccc
Q 025448 179 AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQ 242 (252)
Q Consensus 179 ~~~~ela~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~~~ 242 (252)
..++|+.+...-..+-.--.|..+++---|+|+.+.. .|.-. +.|.+.|+||.++|..-
T Consensus 79 r~~~e~~RI~~sVs~EL~ele~krqel~seI~~~n~k----iEelk-~~i~~~q~eL~~Lk~~i 137 (907)
T KOG2264|consen 79 RILREQKRILASVSLELTELEVKRQELNSEIEEINTK----IEELK-RLIPQKQLELSALKGEI 137 (907)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHH-HHHHHhHHHHHHHHhHH
Confidence 3455555555555555556677777777778877766 44333 34667888888877543
No 45
>PF03342 Rhabdo_M1: Rhabdovirus M1 matrix protein (M1 polymerase-associated protein); InterPro: IPR005010 This is a family of phosphoproteins of unknown function expressed by Rhadovirus.
Probab=21.90 E-value=2.2e+02 Score=25.93 Aligned_cols=64 Identities=25% Similarity=0.351 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhcccCccchhhccC
Q 025448 184 LARAILKFGEIYERIESAKQKQMM-ELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSAMRSN 252 (252)
Q Consensus 184 la~ai~~f~e~yer~E~~K~~~~~-elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~~~~~~~~~~~~~ 252 (252)
-.+|.+.||....+|-.+-|+.+- -||+-=-| ---.++-++++|.|-.|.....-++--+||+|
T Consensus 71 q~dA~k~fgqlir~ik~sHQeelT~HLEkv~~E-----nRAnl~al~eSQ~E~~K~tk~ILs~lIs~R~~ 135 (219)
T PF03342_consen 71 QQDALKAFGQLIRQIKMSHQEELTQHLEKVATE-----NRANLQALTESQQEHEKVTKEILSALISIRSN 135 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-----hHHhHHHHHHHHHHhcchHHHHHHHHHHHHhh
Confidence 467899999999998777666543 24443322 12347889999999888776665666666654
No 46
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.45 E-value=4.7e+02 Score=21.57 Aligned_cols=46 Identities=17% Similarity=0.169 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhc
Q 025448 195 YERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKR 240 (252)
Q Consensus 195 yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~~ 240 (252)
=...+..+.+.-.++++++-++..+|+.++.++..+.+.|+.-+..
T Consensus 87 ~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~ 132 (141)
T PRK08476 87 KEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKE 132 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3344444555556666666666777888888888888877776654
No 47
>PF15419 LNP1: Leukemia NUP98 fusion partner 1
Probab=21.20 E-value=99 Score=27.41 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHH
Q 025448 185 ARAILKFGEIYER 197 (252)
Q Consensus 185 a~ai~~f~e~yer 197 (252)
.-+|+.|.|.||+
T Consensus 107 shSIqeFSESFEq 119 (177)
T PF15419_consen 107 SHSIQEFSESFEQ 119 (177)
T ss_pred cccHHHHHHHHHH
Confidence 3459999999998
No 48
>KOG0602 consensus Neutral trehalase [Carbohydrate transport and metabolism]
Probab=20.77 E-value=80 Score=32.92 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=26.1
Q ss_pred ccccc-CCCCCCC----CCCCCCCCHHHHHHHHHHHhhHHH
Q 025448 7 HNVRG-THAATTG----GGREDCWSEGATGTLIEAWGDRYV 42 (252)
Q Consensus 7 ~~~~~-~~~~~~~----~~r~~~WSe~eT~~LLdawger~~ 42 (252)
.+|+. .+++|+| -.-++-|+.+.++.||+-||++..
T Consensus 529 Y~vt~~~~~~G~ggEY~~QeGFGW~Ng~il~~L~~~g~~~~ 569 (600)
T KOG0602|consen 529 YDVTRDPGPHGGGGEYEVQEGFGWTNGVILDLLKKYGSDLR 569 (600)
T ss_pred eccccCCCCCCCCCccccccCCCccchhHHHHHHHcCCccc
Confidence 46776 3333333 267899999999999999998654
Done!