Query 025448
Match_columns 252
No_of_seqs 170 out of 245
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:32:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025448.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025448hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.8 3.6E-21 1.2E-25 146.2 7.6 82 20-105 2-86 (86)
2 2cu7_A KIAA1915 protein; nucle 97.9 3.8E-05 1.3E-09 56.0 8.1 56 15-88 2-57 (72)
3 3sjm_A Telomeric repeat-bindin 97.9 1.8E-05 6.2E-10 57.1 6.2 53 19-86 8-60 (64)
4 2d9a_A B-MYB, MYB-related prot 97.8 4.6E-05 1.6E-09 53.5 6.4 51 17-84 3-53 (60)
5 1x41_A Transcriptional adaptor 97.8 6.6E-05 2.3E-09 53.0 6.6 50 18-84 4-53 (60)
6 2elk_A SPCC24B10.08C protein; 97.7 0.00015 5E-09 51.0 7.5 47 22-84 9-55 (58)
7 2yus_A SWI/SNF-related matrix- 97.7 7.1E-05 2.4E-09 56.1 6.0 50 17-84 13-62 (79)
8 2dim_A Cell division cycle 5-l 97.7 9.4E-05 3.2E-09 53.4 6.5 52 15-83 2-53 (70)
9 1w0t_A Telomeric repeat bindin 97.7 9.7E-05 3.3E-09 50.7 5.9 49 23-86 3-51 (53)
10 2yum_A ZZZ3 protein, zinc fing 97.5 0.00021 7.2E-09 52.2 6.8 54 18-83 4-57 (75)
11 1guu_A C-MYB, MYB proto-oncoge 97.5 0.00013 4.4E-09 49.6 5.3 46 22-84 3-48 (52)
12 2llk_A Cyclin-D-binding MYB-li 97.4 0.00019 6.5E-09 53.2 5.2 51 18-87 19-69 (73)
13 2k9n_A MYB24; R2R3 domain, DNA 97.4 0.00042 1.4E-08 53.7 7.5 52 19-88 50-101 (107)
14 1ity_A TRF1; helix-turn-helix, 97.4 0.0004 1.4E-08 50.0 6.6 54 18-86 6-59 (69)
15 1gvd_A MYB proto-oncogene prot 97.4 0.0002 6.9E-09 48.7 4.7 46 22-84 3-48 (52)
16 2din_A Cell division cycle 5-l 97.4 0.00057 1.9E-08 48.7 7.0 53 18-89 5-57 (66)
17 3osg_A MYB21; transcription-DN 97.3 0.00025 8.4E-09 56.6 5.5 51 20-88 60-110 (126)
18 2cqr_A RSGI RUH-043, DNAJ homo 97.3 0.00034 1.2E-08 51.8 5.5 54 19-86 15-68 (73)
19 2ltp_A Nuclear receptor corepr 96.4 3.9E-05 1.3E-09 58.5 0.0 57 15-89 9-65 (89)
20 1gv2_A C-MYB, MYB proto-oncoge 97.1 0.00036 1.2E-08 53.6 4.2 51 19-87 53-103 (105)
21 2cjj_A Radialis; plant develop 97.1 0.0018 6.2E-08 50.0 7.8 59 22-94 8-66 (93)
22 2juh_A Telomere binding protei 97.0 0.0041 1.4E-07 50.3 9.7 77 17-108 12-88 (121)
23 2roh_A RTBP1, telomere binding 97.0 0.0028 9.5E-08 51.4 8.2 58 18-88 27-84 (122)
24 2cqq_A RSGI RUH-037, DNAJ homo 96.9 0.004 1.4E-07 45.9 8.0 55 19-88 5-59 (72)
25 1h8a_C AMV V-MYB, MYB transfor 96.8 0.00063 2.2E-08 54.1 2.7 51 19-87 76-126 (128)
26 2ckx_A NGTRF1, telomere bindin 96.7 0.0023 8E-08 48.4 5.6 53 24-89 2-54 (83)
27 2aje_A Telomere repeat-binding 96.6 0.0027 9.3E-08 50.1 5.4 58 17-87 8-65 (105)
28 1wgx_A KIAA1903 protein; MYB D 96.6 0.0069 2.4E-07 45.0 6.9 54 18-85 4-57 (73)
29 1h89_C C-MYB, MYB proto-oncoge 96.4 0.0014 4.7E-08 53.9 2.7 50 19-86 107-156 (159)
30 1h8a_C AMV V-MYB, MYB transfor 96.4 0.0057 2E-07 48.5 5.9 48 19-83 24-71 (128)
31 3zqc_A MYB3; transcription-DNA 96.3 0.0022 7.6E-08 51.3 3.1 50 19-86 51-100 (131)
32 3osg_A MYB21; transcription-DN 96.3 0.006 2E-07 48.5 5.5 47 20-84 9-55 (126)
33 1gv2_A C-MYB, MYB proto-oncoge 96.1 0.0063 2.1E-07 46.5 4.7 45 22-83 4-48 (105)
34 2k9n_A MYB24; R2R3 domain, DNA 96.0 0.0096 3.3E-07 45.9 5.5 43 24-83 3-45 (107)
35 1x58_A Hypothetical protein 49 95.8 0.022 7.6E-07 41.1 6.3 55 18-87 4-58 (62)
36 2eqr_A N-COR1, N-COR, nuclear 95.8 0.014 4.8E-07 41.1 5.2 48 18-83 8-55 (61)
37 1h89_C C-MYB, MYB proto-oncoge 95.6 0.015 5.2E-07 47.6 5.4 49 19-84 55-103 (159)
38 1ign_A Protein (RAP1); RAP1,ye 95.4 0.014 4.7E-07 52.4 4.5 53 19-85 5-59 (246)
39 2iw5_B Protein corest, REST co 95.1 0.029 9.9E-07 50.0 5.8 52 19-88 130-181 (235)
40 3zqc_A MYB3; transcription-DNA 94.4 0.015 5.2E-07 46.4 1.9 43 24-83 4-46 (131)
41 1ug2_A 2610100B20RIK gene prod 93.2 0.37 1.3E-05 37.4 7.7 63 18-95 29-91 (95)
42 2yqk_A Arginine-glutamic acid 90.3 0.68 2.3E-05 32.7 5.9 48 14-79 1-49 (63)
43 2xag_B REST corepressor 1; ami 90.3 0.34 1.2E-05 47.1 5.7 44 20-81 378-421 (482)
44 1fex_A TRF2-interacting telome 86.8 0.99 3.4E-05 31.6 4.7 52 22-83 2-55 (59)
45 2lr8_A CAsp8-associated protei 86.0 0.15 5.1E-06 37.6 0.0 58 19-92 11-68 (70)
46 3hm5_A DNA methyltransferase 1 84.8 2.2 7.5E-05 32.8 6.1 60 23-95 31-90 (93)
47 4a69_C Nuclear receptor corepr 70.7 3.7 0.00012 31.2 3.5 41 21-79 42-82 (94)
48 1gmj_A ATPase inhibitor; coile 69.9 18 0.0006 27.4 7.1 53 186-239 13-71 (84)
49 2crg_A Metastasis associated p 63.8 13 0.00044 26.5 5.1 45 18-80 4-49 (70)
50 4eef_G F-HB80.4, designed hema 57.5 1.8 6E-05 32.2 -0.5 47 20-80 18-64 (74)
51 4iej_A DNA methyltransferase 1 47.3 47 0.0016 25.4 6.0 58 23-93 31-88 (93)
52 3oja_B Anopheles plasmodium-re 33.5 2E+02 0.007 26.8 9.5 29 200-228 533-561 (597)
53 2v4h_A NF-kappa-B essential mo 30.4 2E+02 0.0068 22.6 7.7 51 180-237 25-75 (110)
54 2jee_A YIIU; FTSZ, septum, coi 24.8 2.2E+02 0.0074 21.2 7.5 40 193-233 6-45 (81)
55 3vem_A Helicase protein MOM1; 24.5 1.1E+02 0.0039 24.2 5.0 12 199-210 56-67 (115)
56 1ign_A Protein (RAP1); RAP1,ye 23.2 1.8E+02 0.0061 25.9 6.5 37 47-91 167-203 (246)
57 2hzd_A Transcriptional enhance 22.2 1.6E+02 0.0054 22.0 5.1 66 20-91 4-78 (82)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.84 E-value=3.6e-21 Score=146.18 Aligned_cols=82 Identities=17% Similarity=0.336 Sum_probs=73.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC---C
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P 96 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~---~ 96 (252)
.|...||++||.+||++|++...++..+..+...|++||+.|.+++ +.+|+.||++||++|++.||++|+++ +
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG 77 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG 77 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 3677999999999999999999999988877788999999999864 67999999999999999999999986 3
Q ss_pred CCCCcchHH
Q 025448 97 PSKWPFYYR 105 (252)
Q Consensus 97 ~s~W~ffd~ 105 (252)
+.+|+||+.
T Consensus 78 ~~~~~yf~e 86 (86)
T 2ebi_A 78 SAKMSYYKE 86 (86)
T ss_dssp CCCCCCCCC
T ss_pred CCCCCCCCc
Confidence 669999973
No 2
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.94 E-value=3.8e-05 Score=56.03 Aligned_cols=56 Identities=14% Similarity=0.283 Sum_probs=44.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 15 ~~~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
+.++......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++-++.
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~Ia~~~~--------~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKF------GR----RWTKISKLIG--------SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS--------SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHHHH
Confidence 44566777899999999999987652 33 6999999883 489999999999875553
No 3
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.93 E-value=1.8e-05 Score=57.06 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
..+...||.+|...|+++.... |. ..|..||..+.- ..||+.||++|+.+|.|
T Consensus 8 ~~kk~~WT~eED~~L~~~V~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 8 ITKKQKWTVEESEWVKAGVQKY------GE---GNWAAISKNYPF------VNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp --CCCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHcc------CC---CchHHHHhhcCC------CCCCHHHHHHHHHHHhc
Confidence 3455689999999999987543 21 259999987631 24899999999999976
No 4
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.81 E-value=4.6e-05 Score=53.46 Aligned_cols=51 Identities=25% Similarity=0.438 Sum_probs=40.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 17 ~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
++......||.+|...|+++.... |. ..|..||..|. .||+.||++++.++
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 53 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQF------GQ---QDWKFLASHFP--------NRTDQQCQYRWLRV 53 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHT------CT---TCHHHHHHHCS--------SSCHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcc--------CCCHHHHHHHHHHH
Confidence 456677799999999999987642 21 36999999983 38999999998764
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.76 E-value=6.6e-05 Score=52.96 Aligned_cols=50 Identities=26% Similarity=0.520 Sum_probs=38.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
+.-....||.+|-..||++.... |. ..|..||..|. .||+.||++++.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDC------GF---GNWQDVANQMC--------TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT------CT---TCHHHHHHHHT--------TSCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------Cc---CcHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 35566789999999999986432 21 36999999993 38999999998764
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.70 E-value=0.00015 Score=50.96 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=36.9
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
...||.+|-..||++.... | ...|..||..|.. .||+.||++++.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~------G---~~~W~~IA~~~~~-------~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETL------G---LGNWADIADYVGN-------ARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHT------T---TTCHHHHHHHHCS-------SCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH------C---cCCHHHHHHHHCC-------CCCHHHHHHHHHHH
Confidence 4579999999999987542 2 1369999999941 38999999998764
No 7
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.68 E-value=7.1e-05 Score=56.11 Aligned_cols=50 Identities=30% Similarity=0.457 Sum_probs=38.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 17 ~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
........||.+|...||++.... | ..|..||..|. .||+.||++++.+|
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~------G----~~W~~IA~~v~--------~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMY------K----DDWNKVSEHVG--------SRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHS------S----SCHHHHHHHHS--------SCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHh------C----CCHHHHHHHcC--------CCCHHHHHHHHHHh
Confidence 344556799999999999985431 2 36999999994 38999999987654
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.68 E-value=9.4e-05 Score=53.44 Aligned_cols=52 Identities=23% Similarity=0.466 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 15 ~~~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
+.++..+...||.+|-..|+++.... |. ..|..||..|. .||+.||++|+.+
T Consensus 2 ss~~~~k~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 53 (70)
T 2dim_A 2 SSGSSGKGGVWRNTEDEILKAAVMKY------GK---NQWSRIASLLH--------RKSAKQCKARWYE 53 (70)
T ss_dssp CSCSCSTTCCCCHHHHHHHHHHHHHT------CS---SCHHHHHHHST--------TCCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHhc--------CCCHHHHHHHHHH
Confidence 45566777899999999999887642 21 36999999984 3899999998866
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.65 E-value=9.7e-05 Score=50.69 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
..||.+|...|+++.... |. ..|..||..|.- ..+|+.||++|+.+|.|
T Consensus 3 ~~WT~eEd~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSCC------SSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH------Cc---CCHHHHHHHcCC------CCCCHHHHHHHHHHHHc
Confidence 479999999999987643 21 269999998841 14899999999999875
No 10
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.55 E-value=0.00021 Score=52.17 Aligned_cols=54 Identities=13% Similarity=0.361 Sum_probs=39.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
+......||.+|-..|+++... +..+......|..||..|. .||+.||++++.+
T Consensus 4 p~~~~~~WT~eEd~~L~~~v~~----~g~~~~~~~~W~~IA~~~~--------~Rt~~qcr~r~~~ 57 (75)
T 2yum_A 4 GSSGNQLWTVEEQKKLEQLLIK----YPPEEVESRRWQKIADELG--------NRTAKQVASQVQK 57 (75)
T ss_dssp CCCCSSCCCHHHHHHHHHHHHH----SCCCSCHHHHHHHHHHHHS--------SSCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH----hCCCCCCcccHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 4455568999999999988643 2211111257999999994 3899999999943
No 11
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.54 E-value=0.00013 Score=49.62 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=37.1
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
...||.+|-..|+++.... |+ ..|..||..|. .||+.||++++.++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQN------GT---DDWKVIANYLP--------NRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHTST--------TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CCHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999988653 32 25999999883 38999999998775
No 12
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.42 E-value=0.00019 Score=53.25 Aligned_cols=51 Identities=16% Similarity=0.310 Sum_probs=41.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (252)
+......||.+|-..||+++... |+ .|..||..| . ||+.|||+++..|++.
T Consensus 19 P~i~k~~wT~EED~~L~~l~~~~------G~----kW~~IA~~l-g--------Rt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 19 DRNHVGKYTPEEIEKLKELRIKH------GN----DWATIGAAL-G--------RSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCCSSCHHHHHHHHHHHHHH------SS----CHHHHHHHH-T--------SCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC----CHHHHHHHh-C--------CCHHHHHHHHHHHHHH
Confidence 45667799999999999988542 32 299999999 4 7999999999988753
No 13
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.42 E-value=0.00042 Score=53.74 Aligned_cols=52 Identities=19% Similarity=0.406 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
......||.+|-..||+++... |+ .|..||..|. .||+.||++++.+|.++-
T Consensus 50 ~i~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 50 ALRTDPWSPEEDMLLDQKYAEY------GP----KWNKISKFLK--------NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHT------CS----CHHHHHHHHS--------SSCHHHHHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHh------Cc----CHHHHHHHCC--------CCCHHHHHHHHHHHHhhH
Confidence 3445689999999999987653 33 5999999883 489999999999998763
No 14
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.40 E-value=0.0004 Score=50.03 Aligned_cols=54 Identities=19% Similarity=0.323 Sum_probs=41.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
+......||.+|...|+++.... |. ..|..||..|.- ..+|+.||++|+.++.+
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~------G~---~~W~~Ia~~~~~------~~Rt~~qcr~Rw~~~l~ 59 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYKF------NNRTSVMLKDRWRTMKK 59 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHH------CS---SCHHHHHHHSCC------SSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC---CcHHHHHHHcCc------CCCCHHHHHHHHHHHcC
Confidence 34566789999999999987643 31 269999998841 14899999999998764
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.39 E-value=0.0002 Score=48.73 Aligned_cols=46 Identities=22% Similarity=0.471 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
...||.+|...|+++.... |. ..|..||..|. .||+.||++++.+.
T Consensus 3 k~~Wt~eED~~L~~~v~~~------G~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 48 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHH------Cc---ChHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3589999999999987642 22 36999999873 38999999998764
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.36 E-value=0.00057 Score=48.73 Aligned_cols=53 Identities=21% Similarity=0.376 Sum_probs=40.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (252)
+......||.+|-..||++... -|+ .|..||. +- .||+.||++++.++-+.-.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~------~g~----~W~~Ia~-~~--------gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKL------MPT----QWRTIAP-II--------GRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHH------CTT----CHHHHHH-HH--------SSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHH------cCC----CHHHHhc-cc--------CcCHHHHHHHHHHHhChHh
Confidence 4455668999999999998432 132 6999999 63 2899999999998866543
No 17
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.35 E-value=0.00025 Score=56.64 Aligned_cols=51 Identities=25% Similarity=0.425 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
.....||.+|...||+++... |+ .|..||..|. .||+.||++|+.+|.++.
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEY------GR----QWAIIAKFFP--------GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTST--------TCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHHhc
Confidence 344589999999999998654 32 4999998662 489999999999998875
No 18
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.31 E-value=0.00034 Score=51.83 Aligned_cols=54 Identities=24% Similarity=0.418 Sum_probs=40.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
......||.+|..+|+.+... +..+ ....|..||..|- .||+.||++++.+|..
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~----~g~~--~~~rW~~IA~~vp--------GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQ----YPRG--SSDCWDKIARCVP--------SKSKEDCIARYKLLVS 68 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHH----SCSS--SHHHHHHHGGGCS--------SSCHHHHHHHHHHHHS
T ss_pred ccCCCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHcC--------CCCHHHHHHHHHHHHH
Confidence 445568999999999988643 2212 2356999999983 4899999999998853
No 19
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.37 E-value=3.9e-05 Score=58.46 Aligned_cols=57 Identities=28% Similarity=0.390 Sum_probs=45.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025448 15 ATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (252)
Q Consensus 15 ~~~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (252)
+.++......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++.+++.
T Consensus 9 ~~~p~~~~~~WT~eEd~~l~~~~~~~------G~----~W~~IA~~l~--------gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 9 SGRENLYFQGWTEEEMGTAKKGLLEH------GR----NWSAIARMVG--------SKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 33456667799999999999988653 33 5999999984 3899999999998887753
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.14 E-value=0.00036 Score=53.56 Aligned_cols=51 Identities=24% Similarity=0.487 Sum_probs=39.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (252)
......||.+|-..|++++... |+ .|..||..| +.||+.||++++.+|.++
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHH------SS----CHHHHHTTC--------TTCCHHHHHHHHHHHTC-
T ss_pred cccccCCCHHHHHHHHHHHHHh------CC----CHHHHHHHc--------CCCCHHHHHHHHHHHHhc
Confidence 4456689999999999997653 32 599999766 348999999999987654
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.10 E-value=0.0018 Score=50.02 Aligned_cols=59 Identities=19% Similarity=0.306 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcC
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAK 94 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~ 94 (252)
...||.+|-.+|+.+... +..+ ....|..||..|- .||+.||++++.+|...-+.+...
T Consensus 8 ~~~WT~eEd~~L~~al~~----~~~~--~~~rW~~IA~~vp--------GRT~~q~k~ry~~l~~dv~~iesg 66 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAV----YDKD--TPDRWANVARAVE--------GRTPEEVKKHYEILVEDIKYIESG 66 (93)
T ss_dssp CCSCCHHHHHHHHHHHHH----SCTT--CTTHHHHHHHHST--------TCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----cCCC--CCchHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHHhhcC
Confidence 447999999999887542 2222 1246999999993 389999999999998877665544
No 22
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.04 E-value=0.0041 Score=50.28 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCCC
Q 025448 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPP 96 (252)
Q Consensus 17 ~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~~ 96 (252)
+...+...||.+|..+|++..... +. -.|..||....... ..||++||++|+.||.+.-...-+ -
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~----G~-----G~W~~Ia~~~~~~f----~~RT~v~lKdRWrnllk~~~~~p~--~ 76 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHL----GT-----GRWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTASIAPQ--Q 76 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHH----GG-----GCHHHHHHHHCSCC----SSCCSHHHHHHHHHHHHHHHTCST--T
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHH----CC-----CCHHHHHHHhcccc----CCCCHHHHHHHHHHHHhhhccCCc--c
Confidence 446677799999999999887643 21 25999999875421 359999999999999986433222 1
Q ss_pred CCCCcchHHHHH
Q 025448 97 PSKWPFYYRLDS 108 (252)
Q Consensus 97 ~s~W~ffd~mD~ 108 (252)
...|+|=+.++.
T Consensus 77 krg~~~p~e~~~ 88 (121)
T 2juh_A 77 RRGEPVPQDLLD 88 (121)
T ss_dssp CCCSCCCHHHHH
T ss_pred cCCCCCCHHHHH
Confidence 335677666544
No 23
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.98 E-value=0.0028 Score=51.35 Aligned_cols=58 Identities=17% Similarity=0.201 Sum_probs=44.9
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
.+.....||.+|+.+|++..... |. ..|..|+....... ..||++|||+|+.||.+.-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~------G~---g~W~~I~~~~~~~~----~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHL------GT---GRWRDVKFRAFENV----HHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHH------SS---SCHHHHHHHHHSSS----CCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------CC---CChHHHHHHhcccc----CCCCHHHHHHHHHHHHhhc
Confidence 45667799999999999987653 22 25999999765322 3599999999999998754
No 24
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.93 E-value=0.004 Score=45.87 Aligned_cols=55 Identities=15% Similarity=0.351 Sum_probs=42.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
......||.+|..+|+.+.. .+..|. ..-|+.||..|. ||..||+++++.|++..
T Consensus 5 ~~~~~~WT~eE~k~fe~al~----~~p~~t--~~RW~~IA~~lg---------Rt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMV----KFPGGT--PGRWEKIAHELG---------RSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHH----HSCTTC--TTHHHHHHHHHT---------SCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHH----HCCCCC--CcHHHHHHHHhC---------CCHHHHHHHHHHHHHhc
Confidence 34455899999999998864 233333 245999999982 79999999999997764
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.76 E-value=0.00063 Score=54.14 Aligned_cols=51 Identities=24% Similarity=0.494 Sum_probs=40.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (252)
......||.+|-..||+++... |+ .|..||..| +.+|+.||++++.+|.++
T Consensus 76 ~~~~~~WT~eEd~~L~~~~~~~------G~----~W~~Ia~~l--------~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 76 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHGGGS--------TTCCHHHHHHHHHTTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHH------Cc----CHHHHHHHC--------CCCCHHHHHHHHHHHHhc
Confidence 3455689999999999998653 32 599999876 248999999999887543
No 26
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.74 E-value=0.0023 Score=48.37 Aligned_cols=53 Identities=21% Similarity=0.298 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHH
Q 025448 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYK 89 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK 89 (252)
.||.+|..+|++..... |. ..|..|+..-.... ..||++|||+|+.||.++-.
T Consensus 2 ~WT~eEd~~L~~gv~k~------G~---g~W~~I~~~~~~~~----~~RT~~~lKdrWrnllk~~~ 54 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHL------GT---GRWRDVKMRAFDNA----DHRTYVDLKDKWKTLVHTAS 54 (83)
T ss_dssp CCCHHHHHHHHHHHHHH------CS---SCHHHHHHHHCTTC----TTSCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC---CCcHHHHHhhcccc----CCCCHHHHHHHHHHHHHhcc
Confidence 69999999999887642 22 25999998632111 35999999999999987543
No 27
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.62 E-value=0.0027 Score=50.13 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025448 17 TGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (252)
Q Consensus 17 ~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (252)
+.+.....||.+|+.+|++..... |. -.|..|+....... ..||++||++|+.||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~------G~---g~W~~I~~~~~~~f----~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKL------GT---GRWRDVKLCAFEDA----DHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHH------CS---SSHHHHHSSSSSST----TCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHh------CC---CChHHHHHHhcccc----CCCCHHHHHHHHHHHHhh
Confidence 346677899999999999887642 22 25999987542211 359999999999999874
No 28
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.56 E-value=0.0069 Score=45.00 Aligned_cols=54 Identities=22% Similarity=0.409 Sum_probs=39.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
+-.....||.+|..+|..+.. .+..+. ...|+.||+.|- .||..||+.+.+.|.
T Consensus 4 ~~~~~~~WT~eE~k~fe~ALa----~~~~~t--p~rWe~IA~~V~--------gKT~eE~~~hY~~l~ 57 (73)
T 1wgx_A 4 GSSGDKEWNEKELQKLHCAFA----SLPKHK--PGFWSEVAAAVG--------SRSPEECQRKYMENP 57 (73)
T ss_dssp CCCSSSCCCHHHHHHHHHHHH----HSCSSS--SSHHHHHHHHTT--------TSCHHHHHHHHHHSS
T ss_pred CCCCCCCCCHHHHHHHHHHHH----HCCCCC--ccHHHHHHHHcC--------CCCHHHHHHHHHHHH
Confidence 345567899999999998854 222222 236999999993 389999998777763
No 29
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.44 E-value=0.0014 Score=53.92 Aligned_cols=50 Identities=24% Similarity=0.479 Sum_probs=40.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
......||.+|-..||+++... |+ .|..||..| +.||+.||+|++.+|.+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~------g~----~W~~Ia~~l--------~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRL------GN----RWAEIAKLL--------PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHH------CS----CHHHHHTTS--------TTCCHHHHHHHHHTTTC
T ss_pred cccccCCChHHHHHHHHHHHHH------CC----CHHHHHHHC--------CCCCHHHHHHHHHHHHh
Confidence 4456789999999999998653 32 599999866 34899999999998754
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.36 E-value=0.0057 Score=48.52 Aligned_cols=48 Identities=21% Similarity=0.466 Sum_probs=37.4
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
......||.+|...|+++.... |. ..|..||..|. .+|+.||++++.+
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 71 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKY------GP---KRWSDIAKHLK--------GRIGKQCRERWHN 71 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHT------CS---CCHHHHHHHSS--------SCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHH------CC---CCHHHHHHHhc--------CCcHHHHHHHHHH
Confidence 4455689999999999987542 21 35999999884 3899999998876
No 31
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.29 E-value=0.0022 Score=51.28 Aligned_cols=50 Identities=20% Similarity=0.372 Sum_probs=37.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKK 86 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKK 86 (252)
......||.+|-..||+++... |+ .|..||..|. .||+.||++++.++-+
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~------G~----~W~~Ia~~l~--------gRt~~~~k~rw~~~l~ 100 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKL------GS----KWSVIAKLIP--------GRTDNAIKNRWNSSIS 100 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHS------CS----CHHHHTTTST--------TCCHHHHHHHHHHTTG
T ss_pred cccCCCCCHHHHHHHHHHHHHH------Cc----CHHHHHHHcC--------CCCHHHHHHHHHHHHH
Confidence 3444589999999999987542 22 4999998663 4899999999877543
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.27 E-value=0.006 Score=48.50 Aligned_cols=47 Identities=21% Similarity=0.469 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
.+...||.+|...|+++.... |. .|..||..|. .||+.||+.|+.+.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~------G~----~W~~Ia~~~~--------~Rt~~qcr~Rw~~~ 55 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQH------GS----DWKMIAATFP--------NRNARQCRDRWKNY 55 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH------TT----CHHHHHHTCT--------TCCHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHh------CC----CHHHHHHHcC--------CCCHHHHHHHHhhh
Confidence 445589999999999988654 32 5999998873 38999999988763
No 33
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.11 E-value=0.0063 Score=46.54 Aligned_cols=45 Identities=20% Similarity=0.479 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
...||.+|...|+++.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 k~~WT~eED~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~ 48 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHN 48 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHH------CT---TCHHHHHTTST--------TCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh------CC---CcHHHHhhhhc--------CCCHHHHHHHHHh
Confidence 3479999999999987542 21 35999998873 3899999998766
No 34
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.04 E-value=0.0096 Score=45.93 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
.||.+|...|+++.... |. ..|..||..|. .+|+.||+.++.+
T Consensus 3 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 45 (107)
T 2k9n_A 3 KFTEEEDLKLQQLVMRY------GA---KDWIRISQLMI--------TRNPRQCRERWNN 45 (107)
T ss_dssp SSCHHHHHHHHHHHHHH------CS---SCHHHHHHHTT--------TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH------CC---CCHHHHhhhcC--------CCCHHHHHHHHHH
Confidence 69999999999887642 21 36999999884 3899999998765
No 35
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.85 E-value=0.022 Score=41.14 Aligned_cols=55 Identities=11% Similarity=0.224 Sum_probs=42.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKK 87 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKr 87 (252)
+....-.||++|+.+||+-.... |+ .|..|+..-.- -..||.+.-++|+.+|.|+
T Consensus 4 ~~~~r~~WT~EE~~~L~~gV~k~------G~----~W~~I~~~y~f-----~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 4 GSSGRKDFTKEEVNYLFHGVKTM------GN----HWNSILWSFPF-----QKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCCCSSSCCHHHHHHHHHHHHHH------CS----CHHHHHHHSCC-----CTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH------hH----hHHHHHHhCCC-----ccCcccchHHHHHHHHHhc
Confidence 34567799999999999987654 32 69999975432 1359999999999999863
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.84 E-value=0.014 Score=41.12 Aligned_cols=48 Identities=10% Similarity=0.177 Sum_probs=37.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
.+.....||++|-..|++++... | +.|..||..| +.||..||....-.
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~------g----k~w~~Ia~~l--------~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQH------P----KNFGLIASYL--------ERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHS------T----TCHHHHHHHC--------TTSCHHHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHh------C----CCHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 45667899999999999988753 2 4799999777 34899999875433
No 37
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.64 E-value=0.015 Score=47.60 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=37.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTL 84 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~L 84 (252)
......||.+|...|++++... |. ..|..||..|. .+|+.||++++.++
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~------g~---~~W~~Ia~~l~--------~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKY------GP---KRWSVIAKHLK--------GRIGKQCRERWHNH 103 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHH------CS---CCHHHHHHTST--------TCCHHHHHHHHHHT
T ss_pred CcCCCCCChHHHHHHHHHHHHh------Cc---ccHHHHHHHcC--------CCCHHHHHHHHHHH
Confidence 3455689999999999987542 22 35999998873 38999999988763
No 38
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.37 E-value=0.014 Score=52.42 Aligned_cols=53 Identities=9% Similarity=0.205 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCC--CchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHL--RQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK 85 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~l--r~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LK 85 (252)
.-....||.+|-..||++.... |+. .++.|.+||..| +.+|+.|||+++.++-
T Consensus 5 ~~~k~~FT~EED~~Ile~v~k~------Gn~r~ghk~W~~IAk~L--------pGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 5 SHNKASFTDEEDEFILDVVRKN------PTRRTTHTLYDEISHYV--------PNHTGNSIRHRFRVYL 59 (246)
T ss_dssp ---CCCCCHHHHHHHHHHHHTS------GGGTTCSHHHHHHTTTS--------TTSCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHh------CcCccccccHHHHHHHc--------CCCCHHHHHHHHHHHH
Confidence 3445689999999999988762 222 235699999866 3489999999999843
No 39
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=95.13 E-value=0.029 Score=49.99 Aligned_cols=52 Identities=15% Similarity=0.371 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHH
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKY 88 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrY 88 (252)
......||++|...++++.... | ++|..||..|- .||..||++-+-+-|++|
T Consensus 130 ~k~s~~WTeEE~~lFleAl~kY------G----KDW~~IAk~Vg--------TKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 130 QKCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHH------S----SCHHHHHHHHS--------SCCHHHHHHHHHHTTTTT
T ss_pred CccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHcC--------CCCHHHHHHHHHHHHHHh
Confidence 3556799999999999876542 2 25999999983 389999999876555544
No 40
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.38 E-value=0.015 Score=46.38 Aligned_cols=43 Identities=16% Similarity=0.390 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHH
Q 025448 24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 24 ~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
.||.+|...|+++.... |. ..|..||..|. .||+.||+.++.+
T Consensus 4 ~Wt~eED~~L~~~v~~~------g~---~~W~~Ia~~~~--------~Rt~~qcr~Rw~~ 46 (131)
T 3zqc_A 4 PFTEAEDDLIREYVKEN------GP---QNWPRITSFLP--------NRSPKQCRERWFN 46 (131)
T ss_dssp SCCHHHHHHHHHHHHHH------CS---CCGGGGTTSCT--------TSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh------Cc---CCHHHHHHHHC--------CCCHHHHHHHHhh
Confidence 69999999999876543 21 26999998773 4899999998765
No 41
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=93.20 E-value=0.37 Score=37.38 Aligned_cols=63 Identities=13% Similarity=0.333 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~ 95 (252)
.+..-..||.++-..+|.++..+ |. ..+.|..||..+.. ||..|.++||..|-+-|.+.....
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~------G~-s~~tFa~iA~~L~N--------ks~nqV~~RFq~Lm~Lf~~~~~~~ 91 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQ------GA-QPHTFSVISQQLGN--------KTPVEVSHRFRELMQLFHTACESG 91 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHT------TS-CTTTHHHHHHHHSS--------CCHHHHHHHHHHHHHHHHHCSSSC
T ss_pred CCCEEEEeccccCHHHHHHHHhc------CC-ChhHHHHHHHHHcc--------CCHHHHHHHHHHHHHHHHHHhccC
Confidence 35667799999999999988653 22 34679999999953 799999999999999998876543
No 42
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.30 E-value=0.68 Score=32.65 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHH-HHcccCCCCCCCChHHHHH
Q 025448 14 AATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKN 79 (252)
Q Consensus 14 ~~~~~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~-V~~r~~~~k~~kT~~QCrn 79 (252)
|+++++.....||++|...+++++... .++|..|+.. | ..||..||..
T Consensus 1 ~~~~p~~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v--------~~Kt~~~~v~ 49 (63)
T 2yqk_A 1 GSSGSSGIEKCWTEDEVKRFVKGLRQY----------GKNFFRIRKELL--------PNKETGELIT 49 (63)
T ss_dssp CCCCCCCCCCSCCHHHHHHHHHHHHHT----------CSCHHHHHHHSC--------TTSCHHHHHH
T ss_pred CCCCCCcCCCCcCHHHHHHHHHHHHHh----------CccHHHHHHHHc--------CCCcHHHHHH
Confidence 456677888999999998887765421 2369999885 5 2489999953
No 43
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=90.28 E-value=0.34 Score=47.14 Aligned_cols=44 Identities=18% Similarity=0.364 Sum_probs=34.9
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRI 81 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKi 81 (252)
.....||++|..++++++... | ++|..||+.|. .||..||++=+
T Consensus 378 ~~~~~WT~eE~~~f~~al~~y------G----kdw~~IA~~Vg--------TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKY------G----RDFQAISDVIG--------NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHH------T----TCHHHHHHHHS--------SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHH------C----cCHHHHHHHhC--------CCCHHHHHHHH
Confidence 456799999999999876532 2 37999999994 38999999844
No 44
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=86.78 E-value=0.99 Score=31.62 Aligned_cols=52 Identities=12% Similarity=0.189 Sum_probs=35.0
Q ss_pred CCCCCHHHHHHHHHHHhhHHHhhhcCCC-CchhHHHHHH-HHHcccCCCCCCCChHHHHHHHHH
Q 025448 22 EDCWSEGATGTLIEAWGDRYVRLNRGHL-RQKDWKEVAE-SVNSRENGVKPKKTDIQCKNRIDT 83 (252)
Q Consensus 22 ~~~WSe~eT~~LLdawger~~ql~rg~l-r~k~W~eVA~-~V~~r~~~~k~~kT~~QCrnKid~ 83 (252)
...+|.++-..||+--.+. .... +.+ .+++|+++|+ .+ +..|+.+||+++.+
T Consensus 2 R~~FT~edD~~L~~~v~~~-~~~~-~~~~Gn~iwk~la~~~~--------~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKEN-ARSP-SSVTGNALWKAMEKSSL--------TQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHT-CCST-TTTTSSHHHHHHHHSCS--------SSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHh-cccc-CCCccHHHHHHHHHhHC--------CCCCHHHHHHHHHH
Confidence 3578999998888744322 2111 233 3589999998 44 45799999998753
No 45
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=85.99 E-value=0.15 Score=37.59 Aligned_cols=58 Identities=21% Similarity=0.323 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHh
Q 025448 19 GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEK 92 (252)
Q Consensus 19 ~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK 92 (252)
|..-..||.++-..+|..+.++ |. ..+.|..||..+| ||+.|..+||..|-+-|.+-|
T Consensus 11 ge~vvlWTReeDR~IL~~cq~~------G~-s~~tfa~iA~~Ln---------ks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 11 GEIIILWTRNDDRVILLECQKR------GP-SSKTFAYLAAKLD---------KNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4555689999999999877653 22 2357999998884 689999999999999998755
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=84.77 E-value=2.2 Score=32.82 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=45.5
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhcCC
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP 95 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~~~ 95 (252)
..||.+||..|++....-.+ .|--|++...-.. ...||..+-|+|+-.+-++..+.+..+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----------RW~vI~DRy~~~~---~~~Rt~EdLK~RyY~v~~~l~~~r~~~ 90 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRAVP 90 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHSCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC--
T ss_pred CCCCHHHHHHHHHHHHHhCC----------CeeeehhhhccCC---CCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 79999999999998776432 3777888875211 135999999999999999888877543
No 47
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=70.75 E-value=3.7 Score=31.17 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=30.4
Q ss_pred CCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHH
Q 025448 21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKN 79 (252)
Q Consensus 21 r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrn 79 (252)
..+.||++|..++.+++... .++|..||..| ..||..||-.
T Consensus 42 ~~~~WT~eE~~~F~~~~~~~----------gK~F~~Ia~~l--------~~Kt~~~cV~ 82 (94)
T 4a69_C 42 VMNMWSEQEKETFREKFMQH----------PKNFGLIASFL--------ERKTVAECVL 82 (94)
T ss_dssp HTCCCCHHHHHHHHHHHHHS----------TTCHHHHHHTC--------TTCCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc----------CCCHHHHHHHc--------CCCCHHHHHH
Confidence 35789999998888777532 35788898766 3589999963
No 48
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=69.89 E-value=18 Score=27.39 Aligned_cols=53 Identities=17% Similarity=0.207 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh
Q 025448 186 RAILKFGEIYERIESA------KQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSK 239 (252)
Q Consensus 186 ~ai~~f~e~yer~E~~------K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~~~ 239 (252)
.+|+.-|..|-+.|.| ++++...|.+.|.....||+.+..+ |.+-|-+|.+.+
T Consensus 13 gsir~aggaFgKrEaA~Ee~YfrqkekEqL~~LKkkl~~el~~h~~e-i~~le~~i~rhk 71 (84)
T 1gmj_A 13 GAVRDAGGAFGKREQAEEERYFRARAKEQLAALKKHKENEISHHAKE-IERLQKEIERHK 71 (84)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred CcccccCCCcccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455556666666655 4566777888887666667665554 456666665543
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=63.77 E-value=13 Score=26.55 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=32.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHH-HHcccCCCCCCCChHHHHHH
Q 025448 18 GGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAES-VNSRENGVKPKKTDIQCKNR 80 (252)
Q Consensus 18 ~~~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~-V~~r~~~~k~~kT~~QCrnK 80 (252)
.+...+.||++|..++.+++... .++|..|+.. | ..||..||..=
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~y----------GKdf~~I~~~~v--------~~Kt~~~~v~f 49 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKY----------GKDFNDIRQDFL--------PWKSLTSIIEY 49 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHT----------CSCHHHHHHTTC--------SSSCHHHHHHH
T ss_pred cccCCCCCCHHHHHHHHHHHHHh----------CccHHHHHHHHc--------CCCCHHHHHHH
Confidence 45677899999998887765421 2358889873 5 34899999753
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=57.49 E-value=1.8 Score=32.22 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnK 80 (252)
+....||.++-.+|-.+-.-. ..+. ..-|+.||+.|- .||..+|+..
T Consensus 18 ~ss~~WT~eE~K~FE~ALa~y----p~~t--pdRWekIA~~Vp--------GKT~eEVk~h 64 (74)
T 4eef_G 18 GSGRPWKFSENIAFEIALSFT----NKDT--PDRWKKVAQYVK--------GRTPEEVKKH 64 (74)
T ss_dssp ----CCCTTHHHHHHHHTSSS----CSSC--CSSSTTTGGGSC--------SSCHHHHHGG
T ss_pred CCCCCCCHHHHHHHHHHHHHC----CCCC--CcHHHHHHHHcC--------CCCHHHHHHH
Confidence 345589999999987774321 2222 234999999983 3899999753
No 51
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=47.27 E-value=47 Score=25.40 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhHHHhhhcCCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHHhc
Q 025448 23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKA 93 (252)
Q Consensus 23 ~~WSe~eT~~LLdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKkeK~ 93 (252)
+.||.+||..|++.-.+-.+ -|--|++...-.. ...+|..+-|.|.=.+-++.-+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl----------Rw~vI~DRy~~~~---~~~RtvEdLK~RYY~V~~~l~~~r~ 88 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL----------RFVVIHDRYDHQQ---FKKRSVEDLKERYYHICAKLANVRA 88 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----------CHHHHHHHCCTTT---SCCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCC----------CeEEEeeccccCC---CCCCCHHHHHHHHHHHHHHHHHhhC
Confidence 58999999999998765432 3666777764311 1357887777776666665555543
No 52
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=33.55 E-value=2e+02 Score=26.83 Aligned_cols=29 Identities=31% Similarity=0.442 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 025448 200 SAKQKQMMELEKERLEFIKDVECERMNMF 228 (252)
Q Consensus 200 ~~K~~~~~elEk~Rmef~kdlE~~r~~~~ 228 (252)
+.++++...+|+.+.+..+.++.++.+++
T Consensus 533 ~~~~~~~~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 533 DAKQKETEDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence 44556666666777777777887777766
No 53
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=30.37 E-value=2e+02 Score=22.62 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q 025448 180 ACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQK 237 (252)
Q Consensus 180 ~~~ela~ai~~f~e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ei~~ 237 (252)
.+..|..-+...-|.+.. |+.+..+|...-.. ++-++.++++| ++|++|=+
T Consensus 25 ei~~L~~~L~~AEeaL~~----Kq~~idelk~ei~q--~~~~lE~I~vL-kaQv~IY~ 75 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA----KQELIDKLKEEAEQ--HKIVMETVPVL-KAQADIYK 75 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHTHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH--HHHHHHHHHHH-HHHHHHHH
Confidence 445555555555555554 66666555553333 44555677765 78888754
No 54
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=24.81 E-value=2.2e+02 Score=21.19 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Q 025448 193 EIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQL 233 (252)
Q Consensus 193 e~yer~E~~K~~~~~elEk~Rmef~kdlE~~r~~~~~~~Q~ 233 (252)
|+|+..|..=++.+..+.-.+|| ..||..+-..+-.+.|.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmE-ieELKekN~~L~~e~~e 45 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQME-IEELKEKNNSLSQEVQN 45 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 78889988666666668888888 34455555444444433
No 55
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=24.50 E-value=1.1e+02 Score=24.19 Aligned_cols=12 Identities=42% Similarity=0.340 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 025448 199 ESAKQKQMMELE 210 (252)
Q Consensus 199 E~~K~~~~~elE 210 (252)
|..|++--.|.|
T Consensus 56 E~kklqLkse~e 67 (115)
T 3vem_A 56 EEKKSILKAELE 67 (115)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444555444433
No 56
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=23.16 E-value=1.8e+02 Score=25.89 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=29.2
Q ss_pred CCCCchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHH
Q 025448 47 GHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIE 91 (252)
Q Consensus 47 g~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKke 91 (252)
|.+.-..|++||+.. +..|+..-|+|+.++-+.|-..
T Consensus 167 gp~~~~~fk~ia~~~--------P~HT~~SWRdRyrKfl~~~gi~ 203 (246)
T 1ign_A 167 GPIAREFFKHFAEEH--------AAHTENAWRDRFRKFLLAYGID 203 (246)
T ss_dssp CCCCTTHHHHHHHHT--------TTSCHHHHHHHHHHTHHHHCHH
T ss_pred CcchHHHHHHHHHHC--------CCCChhhHHHHHHHHHhhcChH
Confidence 445445899999987 4579999999999999888444
No 57
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=22.23 E-value=1.6e+02 Score=21.96 Aligned_cols=66 Identities=23% Similarity=0.376 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHhh------HHHhh-hcCCC--CchhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHH
Q 025448 20 GREDCWSEGATGTLIEAWGD------RYVRL-NRGHL--RQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKI 90 (252)
Q Consensus 20 ~r~~~WSe~eT~~LLdawge------r~~ql-~rg~l--r~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYKk 90 (252)
..+.-|++.--.+++++-.- +.+.+ ..|.+ ||. -||+-+..+++ ..+|.+||-..|..||+....
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNe---lIs~yI~~~tG---k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNE---LIARYIKLRTG---KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHH---HHHHHHHHHHS---CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhH---HHHHHHHHHHc---ccCCccchhHHHHHHHHHHhh
Confidence 34568998888888886643 12222 23433 333 38888887664 469999999999999998765
Q ss_pred H
Q 025448 91 E 91 (252)
Q Consensus 91 e 91 (252)
+
T Consensus 78 ~ 78 (82)
T 2hzd_A 78 D 78 (82)
T ss_dssp C
T ss_pred h
Confidence 4
Done!