Query 025449
Match_columns 252
No_of_seqs 227 out of 800
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 10:33:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025449.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025449hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u5e_D 60S ribosomal protein L 100.0 8.2E-85 2.8E-89 595.9 12.2 184 1-184 1-188 (297)
2 4a17_M RPL5, 60S ribosomal pro 100.0 1.1E-84 3.7E-89 595.7 11.5 183 1-183 1-187 (301)
3 3iz5_Q 60S ribosomal protein L 100.0 3.2E-83 1.1E-87 586.3 5.9 180 1-183 5-187 (304)
4 2zkr_n 60S ribosomal protein L 100.0 3.8E-81 1.3E-85 571.5 14.3 184 1-184 1-188 (297)
5 1vq8_N 50S ribosomal protein L 100.0 3.2E-52 1.1E-56 361.1 9.3 149 11-192 2-155 (187)
6 3j21_O 50S ribosomal protein L 100.0 2.4E-51 8.3E-56 359.4 6.0 147 11-190 2-154 (203)
7 1ovy_A 50S ribosomal protein L 100.0 1E-29 3.4E-34 207.0 6.1 107 25-167 9-115 (120)
8 3r8s_O 50S ribosomal protein L 99.9 1.5E-28 5E-33 198.8 6.7 105 28-167 7-111 (116)
9 2zjr_L 50S ribosomal protein L 99.9 3.9E-28 1.3E-32 196.3 0.6 101 27-167 6-109 (114)
10 3v2d_S 50S ribosomal protein L 99.9 1.3E-26 4.6E-31 186.9 8.6 103 25-167 5-107 (112)
11 4gmn_B 60S ribosomal protein L 99.9 3.7E-25 1.3E-29 155.2 1.2 43 1-43 1-43 (49)
12 3bbo_Q Ribosomal protein L18; 99.9 6.9E-24 2.4E-28 180.4 0.8 109 24-167 45-156 (161)
13 3j20_M 30S ribosomal protein S 94.2 0.26 9E-06 40.7 9.0 66 48-125 14-79 (137)
14 2vqe_K 30S ribosomal protein S 93.8 0.24 8.2E-06 40.4 8.0 68 45-125 13-80 (129)
15 3r8n_K 30S ribosomal protein S 91.6 0.6 2E-05 37.4 7.4 66 47-125 5-70 (117)
16 3bbn_K Ribosomal protein S11; 91.3 0.36 1.2E-05 40.0 6.0 67 45-125 26-93 (140)
17 2xzm_K RPS14E; ribosome, trans 87.1 0.81 2.8E-05 38.3 5.1 66 48-125 28-93 (151)
18 3u5c_O RP59A, 40S ribosomal pr 86.3 0.65 2.2E-05 38.3 4.0 63 49-125 15-79 (137)
19 2oxn_A Beta-hexosaminidase; TI 20.7 45 0.0015 30.5 2.2 66 93-181 87-167 (340)
20 3tev_A Glycosyl hyrolase, fami 20.4 37 0.0013 31.3 1.6 66 92-182 104-186 (351)
No 1
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=100.00 E-value=8.2e-85 Score=595.91 Aligned_cols=184 Identities=57% Similarity=0.903 Sum_probs=179.5
Q ss_pred CceeeeecCcccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 025449 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (252)
Q Consensus 1 M~fvk~~knkayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS 80 (252)
|||||++||+|||||||||||||||||||||+|+||++|||||||||+||||||+||+|||||||+++++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rLi~qdknKynt~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (297)
T 3u5e_D 1 MAFQKDAKSSAYSSRFQTPFRRRREGKTDYYQRKRLVTQHKAKYNTPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYS 80 (297)
T ss_dssp -CCTTSCCCHHHHHTCCCCCSTTTTTCCCHHHHHHHHCCCGGGTTCCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCC-CCCcceEEEeecccccccCccee
Q 025449 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (252)
Q Consensus 81 ~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d-~~~~f~~~LDiGL~rtt~G~rVF 159 (252)
+||+++||+++++|++|||+||+|||+||+++||||++|+|++|||||+|+||++| +|+||+||||+||+|+|+|||||
T Consensus 81 ~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LDvGl~rtttG~RVf 160 (297)
T 3u5e_D 81 HELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVF 160 (297)
T ss_dssp GGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSCCCCCCCCCCCSSSCCCCBCEEECTTCCCCTTCSHH
T ss_pred cchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCccccccceeccccccCCCCceeEEEecCCCccCccceeh
Confidence 99999999999999999999999999999999999999999999999999999987 59999999999999999999999
Q ss_pred eeeccccc---ccccCCCccCCCCCCcC
Q 025449 160 GALKVIFK---FIQTSYDYINGFSTTLD 184 (252)
Q Consensus 160 aalKGavD---~IPhs~~~fpg~d~~~~ 184 (252)
||||||+| +||||+++|||||+|++
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~d~e~k 188 (297)
T 3u5e_D 161 GALKGASDGGLYVPHSENRFPGWDFETE 188 (297)
T ss_dssp HHHHHHHHHTCBCCCCSTTSSSEETTTT
T ss_pred hhhhcccccCcccCCCcccccCcccccc
Confidence 99999999 99999999999987643
No 2
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=100.00 E-value=1.1e-84 Score=595.70 Aligned_cols=183 Identities=54% Similarity=0.841 Sum_probs=179.2
Q ss_pred CceeeeecCcccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 025449 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (252)
Q Consensus 1 M~fvk~~knkayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS 80 (252)
|||||++||+|||||||||||||||||||||+|+||++|||||||+|+||||||+||+|||||||+++++||+|||||||
T Consensus 1 m~fvkvvknkaYf~ryqvkfRRRReGKTdY~~R~rlv~qdknKynspkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS 80 (301)
T 4a17_M 1 MGFVKVLKTKAYFKRFQTKYRRRREGLTDYYARKRLIIQDKDKYNTPKYRLVARATNTRIIAQIVYATLKCDRVLCAADS 80 (301)
T ss_dssp -CCCCCCSCHHHHHHCCCCCHHHHTTCCCHHHHHHHHCCCTTSCSCCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEET
T ss_pred CCceeeeeccccccccccchhhcccccccHHHHHHHHHccccccCCCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCC-CCCcceEEEeecccccccCccee
Q 025449 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTE-NRRPFRALLDVGLVKTTTGNRVF 159 (252)
Q Consensus 81 ~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d-~~~~f~~~LDiGL~rtt~G~rVF 159 (252)
+||+++||+++++|++|||+||+|||+||+++||||++|+|++|||||+|+||++| +|+||+||||+||+|+|+|||||
T Consensus 81 ~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~~g~~~~ve~~~~~~~~f~~~LD~Gl~rtt~G~RVf 160 (301)
T 4a17_M 81 YELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKVDGAYFNVDEDQKEKKPFKAILDAGLVRTTTGNRVF 160 (301)
T ss_dssp THHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSCCCSCCCGGGTCCSSCCCBCEEECTTSCCCSSCHHH
T ss_pred ccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCccccccceeecccccCCCCceEEEEecCCcccCcccchh
Confidence 99999999999999999999999999999999999999999999999999999988 59999999999999999999999
Q ss_pred eeeccccc---ccccCCCccCCCCCCc
Q 025449 160 GALKVIFK---FIQTSYDYINGFSTTL 183 (252)
Q Consensus 160 aalKGavD---~IPhs~~~fpg~d~~~ 183 (252)
||||||+| +||||+++|||||+|+
T Consensus 161 aalKGA~DgGL~IPhs~~~fpg~~~e~ 187 (301)
T 4a17_M 161 GVLKGACDGGINIPHSESRFPGYVRAS 187 (301)
T ss_dssp HHHHHHHHTTCBCCCCSSSSSSEEECC
T ss_pred hhhhcccccCcccCCCCccCCCccccc
Confidence 99999999 9999999999998875
No 3
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=100.00 E-value=3.2e-83 Score=586.26 Aligned_cols=180 Identities=75% Similarity=1.145 Sum_probs=176.4
Q ss_pred CceeeeecCcccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 025449 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (252)
Q Consensus 1 M~fvk~~knkayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS 80 (252)
|||||++||+|||||||||||||||||||||+|+||++|||||||||||||| ||+|||||||+++++||+|||||||
T Consensus 5 ~~fvKvvKnkaYf~RyqvkfRRRREGKTdY~~R~rLi~qdknKyntpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS 81 (304)
T 3iz5_Q 5 GGFVKTQKTHAYFKRFQVKFKRRRQGKTDYRARIRLTNQDKNKYNTPKYRFV---TNKDITAQIVYATIAGDIVMAAAYS 81 (304)
T ss_dssp SSHHHHTTTBHHHHHHHSSCHHHHHTCCCHHHHHHHHTTSCCEEECCCSSSS---CSSCCEEEEEEEETTEEEEEEEEET
T ss_pred cceeeeeeccccccccccchhhcccccccHHHHHHHHHcCccccCCCCceee---cCCcEEEEEEecCCCCCEEEEEEec
Confidence 8999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceee
Q 025449 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFG 160 (252)
Q Consensus 81 ~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFa 160 (252)
+||++|||+++++|++||||||+|||+|||++||||++|+|++|||||+|+||+.++|+||+||||+||+|+|+||||||
T Consensus 82 ~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~~g~~~~ve~~~~~~~f~~~LDiGL~rtttG~RVfa 161 (304)
T 3iz5_Q 82 HELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEATGEDYYVEPADERRPFRALLDVGLIRTTTGNRVFG 161 (304)
T ss_dssp TTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCCCSCCCSSCCSSCSCCCSCEEECTTCCCCSSCHHHH
T ss_pred CchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCccccccceecccccCCCCCceEEEecCCcccccCceeEE
Confidence 99999999999999999999999999999999999999999999999999999966799999999999999999999999
Q ss_pred eeccccc---ccccCCCccCCCCCCc
Q 025449 161 ALKVIFK---FIQTSYDYINGFSTTL 183 (252)
Q Consensus 161 alKGavD---~IPhs~~~fpg~d~~~ 183 (252)
|||||+| +||||+++|||||+|+
T Consensus 162 alKGA~DgGL~IPhs~~~fpg~d~e~ 187 (304)
T 3iz5_Q 162 ALKGALDGGLDIPHSDKRFAGFKKDE 187 (304)
T ss_dssp HHHHHHTTTCCCCCCSSSCCCGGGTS
T ss_pred eeccccccCcccCCCcccccCccccc
Confidence 9999999 9999999999998653
No 4
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.8e-81 Score=571.50 Aligned_cols=184 Identities=60% Similarity=0.968 Sum_probs=170.2
Q ss_pred CceeeeecCcccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEec
Q 025449 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYA 80 (252)
Q Consensus 1 M~fvk~~knkayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS 80 (252)
|||||++||+|||||||||||||||||||||+|+||++||||||||||||||||+||+|||||||++.++||+|||||||
T Consensus 1 m~fvkv~kn~aYf~Ryqvk~RRRReGKTdY~~R~rLi~qdknkynt~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS 80 (297)
T 2zkr_n 1 MGFVKVVKNKAYFKRYQVKFRRRREGKTDYYARKRLVIQDKNKYNTPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYA 80 (297)
T ss_dssp ----------CCSTTCCCCCHHHHTTCSCHHHHHHHHCCCSTTCSCCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEG
T ss_pred CCceeeeeccccccccccchhhhccccchHHHHHHHHhcCCcccCCCCceEEEEEecCcEEEEEEeccCCCCEEEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCC-CCcceEEEeecccccccCccee
Q 025449 81 HELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTEN-RRPFRALLDVGLVKTTTGNRVF 159 (252)
Q Consensus 81 ~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~-~~~f~~~LDiGL~rtt~G~rVF 159 (252)
+||++|||+++++|++||||||+|||+|||++||||++|+|++|||||+|+||+.|+ |+||+|+||+|+.|+|+|+|||
T Consensus 81 ~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~~g~~~~ve~~~~~~gi~~vvfDrGl~ryttggRVf 160 (297)
T 2zkr_n 81 HELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVF 160 (297)
T ss_dssp GGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSSSSCCCCCSSSCSSSCCCBEEEECTTSCCCTTCHHH
T ss_pred CcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCccccccccccccccccCCCceEEEEecCCcccCCCchHH
Confidence 999999999999999999999999999999999999999999999999999999884 9999999999999999999999
Q ss_pred eeeccccc---ccccCCCccCCCCCCcC
Q 025449 160 GALKVIFK---FIQTSYDYINGFSTTLD 184 (252)
Q Consensus 160 aalKGavD---~IPhs~~~fpg~d~~~~ 184 (252)
|+||||+| +||||+++|||||+|++
T Consensus 161 a~akGArDgGL~~Phs~~~fpg~d~e~k 188 (297)
T 2zkr_n 161 GALKGAVDGGLSIPHSTKRFPGYDSESK 188 (297)
T ss_dssp HHHHHHHHTTCBCCCCGGGSCCCCCCCC
T ss_pred HHHHHHHhcCcccCCCCccCCCCCcccc
Confidence 99999999 99999999999986543
No 5
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=3.2e-52 Score=361.14 Aligned_cols=149 Identities=37% Similarity=0.543 Sum_probs=139.5
Q ss_pred ccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccccccccc
Q 025449 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEV 90 (252)
Q Consensus 11 ayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~ 90 (252)
|..||||||||||||||||||+|+||++|+ +|||+||+||+|||||||+++++||+|||||||+|++++||+.
T Consensus 2 a~g~ry~vk~rrrregkTdy~~R~rl~~~~-------rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~k~~~k~ 74 (187)
T 1vq8_N 2 ATGPRYKVPMRRRREARTDYHQRLRLLKSG-------KPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLAEYGWEA 74 (187)
T ss_dssp CCSTTCCCCCHHHHTTCCCHHHHHHHHTTC-------SCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGGGGTCCS
T ss_pred CCCCcccccccchhccchhHHHHHHHHhcC-------CCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchhcccccc
Confidence 567999999999999999999999999998 6999999999999999998888999999999999999999987
Q ss_pred CCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc---
Q 025449 91 GLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK--- 167 (252)
Q Consensus 91 gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD--- 167 (252)
+++|++|||+||+|+|+||+++ ||++ |++|.|+.++++|+||||+++||.|
T Consensus 75 ~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~yh~GgRV~Ala~gAre~GL 128 (187)
T 1vq8_N 75 PTGNMPSAYLTGLLAGLRAQEA--------GVEE------------------AVLDIGLNSPTPGSKVFAIQEGAIDAGL 128 (187)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHT--------TCCB------------------CEEECTTSCCCTTCHHHHHHHHHHHTTC
T ss_pred CCCcHHHHHHHHHHHHHHHHHC--------CCCE------------------EEEcCCCceeccchHHHHHHHHhhcCCE
Confidence 8999999999999999999999 9987 8999999999999999999999999
Q ss_pred ccccCCCccCCCCCC--cChhhHHHHH
Q 025449 168 FIQTSYDYINGFSTT--LDLSDYLLSI 192 (252)
Q Consensus 168 ~IPhs~~~fpg~d~~--~~~~~~~~~~ 192 (252)
++|||+++|||||++ .++.||...+
T Consensus 129 ~fph~~~~fp~~~ri~G~hva~y~~~l 155 (187)
T 1vq8_N 129 DIPHNDDVLADWQRTRGAHIAEYDEQL 155 (187)
T ss_dssp BCCCCGGGSCCHHHHHTHHHHHHHHSC
T ss_pred eccCCCccCCCCceeccEEHHHHHHHh
Confidence 999999999999876 5667776543
No 6
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-51 Score=359.37 Aligned_cols=147 Identities=35% Similarity=0.480 Sum_probs=138.1
Q ss_pred ccccccccccchhccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccc-ccccc
Q 025449 11 AYFKRYQVKYKRRREGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP-RYGLE 89 (252)
Q Consensus 11 ayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~-kyG~k 89 (252)
|-.||||||||||||||||||+|+||++|+ +|||+||+||+|||||||+++++||+|||||||+|++ ++||+
T Consensus 2 a~g~ry~vk~rrRregkt~y~~R~rl~~~~-------kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~ 74 (203)
T 3j21_O 2 AHGPRYRVPFRRRREGKTNYRKRLKLLKSG-------KPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWK 74 (203)
T ss_dssp TTTTCSCCCCHHHHHTCCCHHHHHHHHTTC-------CCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCC
T ss_pred CCCCccccchhhHHHHhHHHHHHHHHHhcC-------CCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhccc
Confidence 567999999999999999999999999999 6999999999999999999878999999999999999 79999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc--
Q 025449 90 VGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK-- 167 (252)
Q Consensus 90 ~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD-- 167 (252)
.+++|++|||+||+|||+||+++ ||++ |++|.|+.++|+|+||||+++||.|
T Consensus 75 ~~~~N~~AA~~vG~llA~Ral~k--------GI~~------------------vvfDrgg~~y~~hgRV~Ala~gAre~G 128 (203)
T 3j21_O 75 GHCGNTPSAYLLGLLIGYKAKQA--------GIEE------------------AILDIGLHPPVRGSSVFAVLKGAVDAG 128 (203)
T ss_dssp SCTTSHHHHHHHHHHSSSSTTSS--------CCCC------------------CEEECCSSCCCTTSHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHHHHHHHhC--------CCCE------------------EEEecCcceeccCcchhhhhhhcccCC
Confidence 89999999999999999999999 9986 8999999999999999999999999
Q ss_pred -ccccCCCccCCCCCC--cChhhHHH
Q 025449 168 -FIQTSYDYINGFSTT--LDLSDYLL 190 (252)
Q Consensus 168 -~IPhs~~~fpg~d~~--~~~~~~~~ 190 (252)
+||||+++|||++++ .++.||.-
T Consensus 129 L~iPhs~~~fp~~~ri~G~hva~y~~ 154 (203)
T 3j21_O 129 LNVPHSPEIFPDEYRIRGEHIAEYAK 154 (203)
T ss_dssp CCCCCCSSCSCCHHHHHTCHHHHHHH
T ss_pred eecccCCccCCCcccccCccHHHHHH
Confidence 999999999999765 55666654
No 7
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=99.96 E-value=1e-29 Score=207.00 Aligned_cols=107 Identities=28% Similarity=0.243 Sum_probs=85.4
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHH
Q 025449 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (252)
Q Consensus 25 EGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlL 104 (252)
+.+...+.|.|..++| ++++|||+||+||+|||||||++ +||+|||||||+|++ ++ ..+++|++|||+||++
T Consensus 9 ~~r~~r~~R~r~ki~g----t~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAsT~e~~-~~-~~~~~n~~AA~~vG~l 80 (120)
T 1ovy_A 9 AVRKKRHARIRKKIFG----TTERPRLSVFRSNKHIYAQIIDD--TKSATIVSASTLDKE-FG-LDSTNNIEAAKKVGEL 80 (120)
T ss_dssp ---------------C----CSSCCSEEEEEETTEEEEEEECC--SSCCCEEEESTTSTT-TC-SSCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC----CCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEecCchh-hC-cCCCCcHHHHHHHHHH
Confidence 4455677899999998 78999999999999999999986 799999999999997 55 3468999999999999
Q ss_pred HHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc
Q 025449 105 LARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK 167 (252)
Q Consensus 105 lArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD 167 (252)
+|+|++++ ||++ +++|.|..++ |+||+|+++||.|
T Consensus 81 lA~Ral~~--------GI~~------------------vvfDrgg~~y--hgrV~ala~~are 115 (120)
T 1ovy_A 81 VAKRALEK--------GIKQ------------------VVFDRGGYLY--HGRVKALADAARE 115 (120)
T ss_dssp HHHHHHHH--------SSSC------------------CCCCSTTCSS--CSSTHHHHHHHHH
T ss_pred HHHHHHHC--------CCCE------------------EEEecCCccc--cHHHHHHHHHHHH
Confidence 99999999 9987 7899999987 9999999999987
No 8
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=99.95 E-value=1.5e-28 Score=198.78 Aligned_cols=105 Identities=26% Similarity=0.164 Sum_probs=94.9
Q ss_pred hhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHH
Q 025449 28 TDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLAR 107 (252)
Q Consensus 28 TDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlLlAr 107 (252)
...+.|.|..+.+ +++|||+|++||+|||||||++ +||+|||||||+|++.+||..+++|++|||+||+++|+
T Consensus 7 ~~r~~r~R~ki~~-----~~rpRL~V~rSnkhIyAQiidd--~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~ 79 (116)
T 3r8s_O 7 IRRATRARRKLQE-----LGATRLVVHRTPRHIYAQVIAP--NGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAE 79 (116)
T ss_dssp HHHHHHHHHHHHT-----TTCCEEEEEECSSCEEEEEECT--TSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-----CCCCEEEEEEeCCEEEEEEEEc--CCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHH
Confidence 3456677777766 5799999999999999999986 79999999999999999998899999999999999999
Q ss_pred HHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc
Q 025449 108 RVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK 167 (252)
Q Consensus 108 RAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD 167 (252)
|++++ ||++ +++|.|..+. ++||+|..+||.|
T Consensus 80 Ral~~--------GI~~------------------vvfDrgg~~y--hGrV~Ala~~are 111 (116)
T 3r8s_O 80 RALEK--------GIKD------------------VSFDRSGFQY--HGRVQALADAARE 111 (116)
T ss_dssp HHHTT--------TCCC------------------CEEECTTSCS--SSHHHHHHHHHHH
T ss_pred HHHHC--------CCCE------------------EEEecCCCcc--cHHHHHHHHHHHH
Confidence 99999 9997 7999999987 6799999999976
No 9
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=99.93 E-value=3.9e-28 Score=196.33 Aligned_cols=101 Identities=24% Similarity=0.197 Sum_probs=91.9
Q ss_pred chhHHHHHHHHHhCCCCCC---CCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHH
Q 025449 27 KTDYRARIRLINQDKNKYN---TPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGL 103 (252)
Q Consensus 27 KTDY~~R~rLi~qdKnKyn---spKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGl 103 (252)
+...+.|.|..++| + +++|||+|++||+|||||||++ +||+|||||||+|| .+++|++|||+||+
T Consensus 6 r~~r~~r~r~ki~g----t~~~~~rpRL~V~rSnkhIyAQiidd--~~~~tl~sAST~el------~~~~n~~AA~~vG~ 73 (114)
T 2zjr_L 6 TIRRKLRTRRKVRT----TTAASGRLRLSVYRSSKHIYAQIIDD--SRGQTLAAASSAAL------KSGNKTDTAAAVGK 73 (114)
T ss_dssp --CHHHHHHHHHHS----CSTTTCSEEECCCTTSSCCCCCEEET--TTTEECCCCCSCSC------CTTCSSSSHHHHHH
T ss_pred HHHHHHHHHhhhcc----ccCCCCCCEEEEEEeCCeEEEEEEEc--CCCEEEEEEEchHh------cCCCCHHHHHHHHH
Confidence 34567888888998 6 8999999999999999999976 79999999999996 26789999999999
Q ss_pred HHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc
Q 025449 104 LLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK 167 (252)
Q Consensus 104 LlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD 167 (252)
++|+|++++ ||++ +++|.|+.++ |+||+|+++||.|
T Consensus 74 llA~Ral~~--------GI~~------------------vvfDrgg~~y--hgrV~Ala~~are 109 (114)
T 2zjr_L 74 ALAAAAAEK--------GIKQ------------------VVFDRGSYKY--HGRVKALADAARE 109 (114)
T ss_dssp HHHHHHHTT--------CCCC------------------CEECCCSSCS--CSHHHHHHHHHHH
T ss_pred HHHHHHHHC--------CCCE------------------EEEecCCccc--cHHHHHHHHHHHH
Confidence 999999999 9987 8999999999 9999999999987
No 10
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=99.93 E-value=1.3e-26 Score=186.86 Aligned_cols=103 Identities=25% Similarity=0.191 Sum_probs=91.3
Q ss_pred cCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHH
Q 025449 25 EGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLL 104 (252)
Q Consensus 25 EGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlL 104 (252)
+.+...+.|.|..++| +|+|||+|++||+|||||||++ +||+|||||||+|++. + ++|++|||+||++
T Consensus 5 ~~r~~r~~r~r~ki~g-----t~rpRL~V~rSnkhiyAQiidd--~~~~tlasAsT~e~~~---k--~~n~~AA~~vG~l 72 (112)
T 3v2d_S 5 TAYERRKFRVRNRIKR-----TGRLRLSVFRSLKHIYAQIIDD--EKGVTLVSASSLALKL---K--GNKTEVARQVGRA 72 (112)
T ss_dssp CHHHHHHHHHHHHHHH-----TCCCEEEEEECSSCEEEEEEET--TTTEEEEEEETTTTTC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-----CCCCEEEEEEeCCeEEEEEEec--CCCeEEEEEEecchhc---c--CCCHHHHHHHHHH
Confidence 4444567788888887 4599999999999999999986 7999999999999973 2 6899999999999
Q ss_pred HHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc
Q 025449 105 LARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK 167 (252)
Q Consensus 105 lArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD 167 (252)
+|+|++++ ||++ +++|.|..+. ++||+|.++||.|
T Consensus 73 lA~ra~~~--------GI~~------------------vvfDrgg~~y--hGrV~Ala~~are 107 (112)
T 3v2d_S 73 LAEKALAL--------GIKQ------------------VAFDRGPYKY--HGRVKALAEGARE 107 (112)
T ss_dssp HHHHHHTT--------TCCB------------------CEEECTTSCS--CSSTTHHHHHHHH
T ss_pred HHHHHHHC--------CCCE------------------EEEecCCCcc--cHHHHHHHHHHHH
Confidence 99999999 9997 7999999998 7999999999986
No 11
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=99.90 E-value=3.7e-25 Score=155.19 Aligned_cols=43 Identities=60% Similarity=0.930 Sum_probs=41.7
Q ss_pred CceeeeecCcccccccccccchhccCchhHHHHHHHHHhCCCC
Q 025449 1 MAFAKAQKSKAYFKRYQVKYKRRREGKTDYRARIRLINQDKNK 43 (252)
Q Consensus 1 M~fvk~~knkayfkRyqVk~RRRREGKTDY~~R~rLi~qdKnK 43 (252)
|||||++||+||||||||||||||||||||++|++|++|||+.
T Consensus 1 M~FvKvvKnkaYfkRyQvkfRRRREGKTDYyaRkrLv~QdKas 43 (49)
T 4gmn_B 1 MAFHKLVKNSAYYSRFQTKFKRRRQGKTDYYARKRLITQAKGS 43 (49)
T ss_pred CCceeeehhHHHHHHHhhHHhhhhcccchHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999999999999854
No 12
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.87 E-value=6.9e-24 Score=180.36 Aligned_cols=109 Identities=23% Similarity=0.198 Sum_probs=93.1
Q ss_pred ccCchhHHHHHHHHHhCCCCCCCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEeccccc---ccccccCCCcHHHHHH
Q 025449 24 REGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELP---RYGLEVGLTNYAAAYC 100 (252)
Q Consensus 24 REGKTDY~~R~rLi~qdKnKynspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~---kyG~k~gltN~aAAYl 100 (252)
++.+...+.|.|..++| ++.+|||+|++||+|||||||++ ++|+|||||||.|.+ .++| +.++|.+||+.
T Consensus 45 ~~~R~rR~~RiR~ki~g----t~~rPRL~V~rSnkhIyAQvIdd--~~g~tLasASTlek~lk~~l~~-g~~~n~~AA~~ 117 (161)
T 3bbo_Q 45 REDRTARHVRIRKKVEG----TPERPRLCVFRSNKHLYVQVIDD--SKMHTLASASTMQKSISEELDY-SSSPTIEVAKK 117 (161)
T ss_dssp CCCGGGTSCCSCSGGGG----SSSCCCCEEEECSSCEEEEEECC--TTSCEEEEEEHHHHHHHHCCTT-CCSSSHHHHHH
T ss_pred HHHHHHHHHHHHHhhcc----CCCCCEEEEEecCCeEEEEEEEC--CCCEEEEEEeCCcHHHHhhccc-cCCCCHHHHHH
Confidence 34455566788888888 68899999999999999999987 799999999998743 2455 46899999999
Q ss_pred HHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceeeeeccccc
Q 025449 101 TGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFGALKVIFK 167 (252)
Q Consensus 101 tGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFaalKGavD 167 (252)
+|+++|+||+++ ||++ +++|.|..+ -++||+|..+||.|
T Consensus 118 VG~liAeRA~e~--------GI~~------------------VvFDRgg~~--YhGRVkAladaaRe 156 (161)
T 3bbo_Q 118 VGEVIASACLEK--------GITK------------------VAFDRGGYP--YHGRVKALADAARE 156 (161)
T ss_dssp HHHHSSSHHHHT--------SSCC------------------CCCCCSSSC--SSSTTHHHHHHHTT
T ss_pred HHHHHHHHHHHC--------CCCE------------------EEEeCCCCc--chHHHHHHHHHHHH
Confidence 999999999999 9998 689999776 47799999999876
No 13
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=94.21 E-value=0.26 Score=40.68 Aligned_cols=66 Identities=12% Similarity=-0.039 Sum_probs=49.9
Q ss_pred cceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceee
Q 025449 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (252)
Q Consensus 48 KpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV 125 (252)
..-+-|+-|-++.++.|.|. .|..+++.+|+-.....|- .-...-||+.++.-+|+++++. |++++
T Consensus 14 ~gi~hI~asfNNTivtiTD~--~G~~~i~~~S~G~~gfkg~--~ksTp~AA~~aa~~~~~~a~e~--------Gi~~v 79 (137)
T 3j20_M 14 WGIAHIYSSFNNTIIHITDI--TGAETISRWSGGMVVKADR--DEPSPYAAMLAARRAAEEALEK--------GIVGV 79 (137)
T ss_dssp EEEEEEEECSSCEEEEEEES--SSCSEEEEEEGGGTCSCTT--TSSSHHHHHHHHHHHHHHHHHH--------TEEEE
T ss_pred ceEEEEEcCCCCEEEEEEcC--CCCEEEEEEccceeeecCC--ccCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 45555777999999999997 5767999888765543332 1245668999999999999998 88764
No 14
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=93.84 E-value=0.24 Score=40.39 Aligned_cols=68 Identities=13% Similarity=0.071 Sum_probs=51.3
Q ss_pred CCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCcee
Q 025449 45 NTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVE 124 (252)
Q Consensus 45 nspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~e 124 (252)
+-+.+.+-|+-|-+++++.|.|. .| .+++.+|+-.+.-.|-+ -...-||+.++.-+|+++.+. |+.+
T Consensus 13 ~~~~gi~hI~as~NNTivtiTd~--~G-~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~ 79 (129)
T 2vqe_K 13 QVASGRAYIHASYNNTIVTITDP--DG-NPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAY--------GMQS 79 (129)
T ss_dssp CCSEEEEEEEECSSCEEEEEECT--TS-CEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTT--------TCCE
T ss_pred cccceEEEEEecCCCEEEEEEcC--CC-CEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHh--------CCeE
Confidence 34568888999999999999996 45 57777777555322221 356789999999999999988 8776
Q ss_pred e
Q 025449 125 A 125 (252)
Q Consensus 125 V 125 (252)
+
T Consensus 80 v 80 (129)
T 2vqe_K 80 V 80 (129)
T ss_dssp E
T ss_pred E
Confidence 4
No 15
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=91.63 E-value=0.6 Score=37.40 Aligned_cols=66 Identities=17% Similarity=0.007 Sum_probs=47.5
Q ss_pred CcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceee
Q 025449 47 PKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (252)
Q Consensus 47 pKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV 125 (252)
+.--+=|+-|-++.++.+.|. .|. +++.+|+-.+.-.|-+ ....-||+.++.-+|+++.+. |++++
T Consensus 5 ~~gi~hI~as~NNTivtiTD~--~G~-~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~--------Gi~~v 70 (117)
T 3r8n_K 5 SDGVAHIHASFNNTIVTITDR--QGN-ALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEY--------GIKNL 70 (117)
T ss_dssp CEEEEEEEECSSCEEEEEECT--TSC-CSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTS--------CCCEE
T ss_pred ceeEEEEEcccCCEEEEEEcC--CCC-EEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHh--------CCcEE
Confidence 344455777889999999997 465 8888887655322222 245668899999999999988 87764
No 16
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=91.34 E-value=0.36 Score=39.98 Aligned_cols=67 Identities=19% Similarity=0.079 Sum_probs=50.4
Q ss_pred CCCcceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccC-CCcHHHHHHHHHHHHHHHHhhhccccccCCce
Q 025449 45 NTPKYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVG-LTNYAAAYCTGLLLARRVLKMLEMDAEYEGHV 123 (252)
Q Consensus 45 nspKpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~g-ltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~ 123 (252)
+-+.+-+-|+-|-+++++.|.|. .| .+++.+|+-.+. .++. -...-||+.++.-+|+++.+. |+.
T Consensus 26 ~~~~gi~hI~as~NNTivtiTD~--~G-~~i~~~SaG~~G---fKg~rksTp~AA~~aa~~~~~~a~e~--------Gi~ 91 (140)
T 3bbn_K 26 KIPKGVIHVQASFNNTIVTVTDV--RG-RVVSWASAGTCG---FRGTKRGTPFAAQTAAGNAIRTVVEQ--------GMQ 91 (140)
T ss_dssp CCCCCEEEEEECSSCEEEEEECS--SS-CEEEEEETTTSS---CCTTSCSSHHHHHHHHTSGGGTSTTT--------CCC
T ss_pred cceeeEEEEEecCCCEEEEEEcC--CC-CEEEEEecccee---EcccccCCHHHHHHHHHHHHHHHHHh--------CCe
Confidence 34578889999999999999996 45 577777775553 3322 356778888888888888887 776
Q ss_pred ee
Q 025449 124 EA 125 (252)
Q Consensus 124 eV 125 (252)
++
T Consensus 92 ~v 93 (140)
T 3bbn_K 92 RA 93 (140)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 17
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=87.06 E-value=0.81 Score=38.35 Aligned_cols=66 Identities=11% Similarity=-0.063 Sum_probs=47.6
Q ss_pred cceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCCCcHHHHHHHHHHHHHHHHhhhccccccCCceee
Q 025449 48 KYRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGLTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (252)
Q Consensus 48 KpRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV 125 (252)
..-+-|+-|-+++++.|.|. .|..++++++.-..-+.+- .-...-||+.++.-+|+++.+. |++++
T Consensus 28 ~gi~hI~asfNNTiVtiTD~--~G~~~~~~ssgg~~~k~~r--~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v 93 (151)
T 2xzm_K 28 FGVCHIMATWNDTFIHVTDL--SGRETLVRVTGGMKVKADR--EESSPYAAMQAAIDVVNRCKEL--------KINAL 93 (151)
T ss_dssp EEEEEEEBCSSCBCCEEECT--TCCSEEEECCHHHHCSSGG--GGSCHHHHHHHHHHHHHHHHHH--------TCCEE
T ss_pred eeEEEEEccCCCEEEEEECC--CCCEEEEEecCcceEeCCC--CcCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 46666777999999999997 6887887766543222221 1245668899999999999998 88764
No 18
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=86.26 E-value=0.65 Score=38.31 Aligned_cols=63 Identities=11% Similarity=0.056 Sum_probs=44.7
Q ss_pred ceEEEEecCCcEEEEEEeeccCCCEEEEEEecccccccccccCC--CcHHHHHHHHHHHHHHHHhhhccccccCCceee
Q 025449 49 YRFVVRFTNKDITAQIISASIAGDIVLASAYAHELPRYGLEVGL--TNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEA 125 (252)
Q Consensus 49 pRLVVrrTNrhIiaQII~~~~eGD~tLaSAsS~EL~kyG~k~gl--tN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV 125 (252)
.-+-|+-|-++.++.|.|. .|..+++ .||--+ |+|++. ...-||.+++.-+|+++++. |++++
T Consensus 15 gi~hI~asfNNTivtvTD~--~G~~~~~-~ssG~~---gfKg~r~ksTpyAAq~aa~~~a~~a~e~--------Gi~~v 79 (137)
T 3u5c_O 15 GVARIYASFNDTFVHVTDL--SGKETIA-RVTGGM---KVKADRDESSPYAAMLAAQDVAAKCKEV--------GITAV 79 (137)
T ss_dssp EECCEEEETTEEEECCEET--TSSSCCC-CCBTTT---TSCCSTTTTCHHHHHHHHHHHHHHHHHH--------TCCEE
T ss_pred EEEEEEccCCCEEEEEEcC--CCCEEEE-EeCCCc---EEeCCcccCCHHHHHHHHHHHHHHHHHc--------CCeEE
Confidence 4444777999999999997 5765554 444333 344433 45568899999999999998 88764
No 19
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=20.68 E-value=45 Score=30.53 Aligned_cols=66 Identities=24% Similarity=0.317 Sum_probs=43.8
Q ss_pred Cc--HHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeecccccccCcceee----------
Q 025449 93 TN--YAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTTGNRVFG---------- 160 (252)
Q Consensus 93 tN--~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~G~rVFa---------- 160 (252)
.| .+.|+..|..+|+.+.+. |+.- -|--++|+.--++.-|.|-||
T Consensus 87 ~d~~~~la~~~g~~~a~E~ra~--------Gi~~---------------~~aPv~Dv~~~~~~ig~rsfgeDP~lv~~~a 143 (340)
T 2oxn_A 87 AENGVELAEQGGWLMAAELIAH--------DVDL---------------SFAPVLDMGFACKAIGNRAFGEDVQTVLKHS 143 (340)
T ss_dssp STTHHHHHHHHHHHHHHHHHTT--------TCCE---------------ECCCBCCCCSCSTTTGGGSSCSSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHh--------CCCE---------------EecCccCCCCCCCcCcCCCCCCCHHHHHHHH
Confidence 46 789999999999999988 6653 123456765433345566665
Q ss_pred --eeccccc-ccccCCCccCCCCC
Q 025449 161 --ALKVIFK-FIQTSYDYINGFST 181 (252)
Q Consensus 161 --alKGavD-~IPhs~~~fpg~d~ 181 (252)
.++|.-+ .|-..-|-|||++.
T Consensus 144 ~a~v~Glq~~gV~a~~KHFpG~G~ 167 (340)
T 2oxn_A 144 SAFLRGMKAVGMATTGKHFPGHGA 167 (340)
T ss_dssp HHHHHHHHHTTCCCEEEEETCCTT
T ss_pred HHHHHHHHHCCceeeeccCcCCCC
Confidence 3455554 56566677888854
No 20
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=20.36 E-value=37 Score=31.27 Aligned_cols=66 Identities=21% Similarity=0.264 Sum_probs=44.0
Q ss_pred CCcHHHHHHHHHHHHHHHHhhhccccccCCceeecCcccccccCCCCCcceEEEeeccccccc----Ccceee-------
Q 025449 92 LTNYAAAYCTGLLLARRVLKMLEMDAEYEGHVEATGEDYSVEPTENRRPFRALLDVGLVKTTT----GNRVFG------- 160 (252)
Q Consensus 92 ltN~aAAYltGlLlArRAL~k~~~d~~y~Gi~eV~g~~~~ve~~d~~~~f~~~LDiGL~rtt~----G~rVFa------- 160 (252)
+.|.+.++..|..+|+.+.+. |+.- -|--++|+. |... |.|-||
T Consensus 104 t~d~~l~~~~g~~~a~E~ra~--------Gi~~---------------~~aPv~Dv~--r~p~~~rig~RsfgeDP~lv~ 158 (351)
T 3tev_A 104 ADDQQLTEDVNAALARQLRSV--------GINW---------------NFTPVLDIN--VNPANPVIGDRAYGSDAARVT 158 (351)
T ss_dssp HCCHHHHHHHHHHHHHHHHHH--------TCCE---------------ECCCBCCCC--CCTTCCSSGGGSSCSSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHc--------CCCE---------------eccceeEec--cCCCCCcccccCCCCCHHHHH
Confidence 458899999999999999988 6653 122356643 3332 334454
Q ss_pred -----eeccccc-ccccCCCccCCCCCC
Q 025449 161 -----ALKVIFK-FIQTSYDYINGFSTT 182 (252)
Q Consensus 161 -----alKGavD-~IPhs~~~fpg~d~~ 182 (252)
.++|.-+ .|-..-|-|||+..+
T Consensus 159 ~~a~a~v~Glq~~gV~a~~KHFpG~g~~ 186 (351)
T 3tev_A 159 RHGRAALAGHTREGVAPCAKHFPGHGDT 186 (351)
T ss_dssp HHHHHHHHHHHTTTCEECEEEETCCTTC
T ss_pred HHHHHHHHHHHHcCCeEEeeeccCCCCC
Confidence 3566666 666777889999653
Done!