BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025450
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum
GN=LET12 PE=2 SV=1
Length = 426
Score = 286 bits (732), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 147/177 (83%), Positives = 162/177 (91%), Gaps = 1/177 (0%)
Query: 68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
WE KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS + G+
Sbjct: 158 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ 217
Query: 128 V-LDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186
LDDK+LDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTGV+PGE T
Sbjct: 218 PPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEGT 277
Query: 187 GATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
GATMSDDD+DQ DSDTNF DG DGPDSMGFGPLVPTESERSLMERVR ELKHELKQ
Sbjct: 278 GATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQ 334
>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3
PE=1 SV=1
Length = 431
Score = 286 bits (732), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 143/193 (74%), Positives = 161/193 (83%), Gaps = 12/193 (6%)
Query: 60 NDNGRAE------DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS 113
ND G A W+ + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S
Sbjct: 140 NDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQS 199
Query: 114 RDVLAKYSAV---ANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDL 170
+ V+AKYSA+ A G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++
Sbjct: 200 QHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEI 259
Query: 171 EQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLM 230
EQSLQSLTGVSPGE GATMSDD+++QV+SD N FDG L D +GFGPL+PTESERSLM
Sbjct: 260 EQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLM 316
Query: 231 ERVRHELKHELKQ 243
ERVR ELKHELKQ
Sbjct: 317 ERVRQELKHELKQ 329
>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4
PE=2 SV=3
Length = 393
Score = 284 bits (726), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 138/182 (75%), Positives = 159/182 (87%), Gaps = 6/182 (3%)
Query: 65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
AE W+ + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS +
Sbjct: 115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174
Query: 125 NGRVL---DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181
+ L DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TGVS
Sbjct: 175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234
Query: 182 PGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHEL 241
PGE TGATMS+D+++QV+SD + FDGSLDG +GFGPLVPTESERSLMERVR ELKHEL
Sbjct: 235 PGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHEL 291
Query: 242 KQ 243
KQ
Sbjct: 292 KQ 293
>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1
Length = 427
Score = 275 bits (702), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/236 (63%), Positives = 179/236 (75%), Gaps = 18/236 (7%)
Query: 26 WLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNG------------------RAED 67
WL+ + R H+N+ D +DD A + + S+D+ +
Sbjct: 102 WLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLKPDSILNKNEGGGGDGGVMN 161
Query: 68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
W+ + KAEI+ HPLYE LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA+ NG
Sbjct: 162 WQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGM 221
Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTG 187
V DDKELDQFM +YVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE T
Sbjct: 222 VGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTS 281
Query: 188 ATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
ATMSDD++DQVDSD N FD ++G DSMGFGPL+PTESERSLMERVR ELKHELKQ
Sbjct: 282 ATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQ 337
>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica
GN=OSH45 PE=2 SV=2
Length = 374
Score = 271 bits (694), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 135/173 (78%), Positives = 153/173 (88%), Gaps = 3/173 (1%)
Query: 72 KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
+CKAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+A DD
Sbjct: 107 RCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDD 166
Query: 132 -KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATM 190
+ELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG SPGE TGATM
Sbjct: 167 GRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATM 226
Query: 191 SDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
SD ++DQ DS+ N +D SLDG D+MGFG +PTESERSLMERVR ELKHELKQ
Sbjct: 227 SDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQ 277
>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5
PE=1 SV=2
Length = 383
Score = 260 bits (664), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 128/181 (70%), Positives = 150/181 (82%), Gaps = 4/181 (2%)
Query: 65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
EDW + KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+ V AKYS +
Sbjct: 110 GEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL- 168
Query: 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE 184
G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTGVSP E
Sbjct: 169 -GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSE 227
Query: 185 STGATMSDDDED-QVDSDTNFFDGSLDGPDS-MGFGPLVPTESERSLMERVRHELKHELK 242
S G TMSDD++D QV+S+ N FDGSLDG D MGFGPLVPTE ERSLMERV+ ELKHELK
Sbjct: 228 SNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELK 287
Query: 243 Q 243
Q
Sbjct: 288 Q 288
>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica
GN=HOS58 PE=2 SV=2
Length = 313
Score = 236 bits (601), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/171 (71%), Positives = 139/171 (81%), Gaps = 2/171 (1%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-K 132
KA + HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++ LA SA A +
Sbjct: 43 KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGE 102
Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD 192
ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVM CW+LEQSLQSLTG SPGE TGATMSD
Sbjct: 103 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSD 162
Query: 193 DDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
D+++QVDS+ N FDG+ DG D MGFGPL+ TE ERSL+ERVRHELK+ELKQ
Sbjct: 163 DEDNQVDSEANMFDGN-DGSDGMGFGPLMLTEGERSLVERVRHELKNELKQ 212
>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica
GN=HOS59 PE=2 SV=2
Length = 323
Score = 231 bits (588), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/181 (67%), Positives = 142/181 (78%), Gaps = 8/181 (4%)
Query: 68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
WE + KA I HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++ LA +A A
Sbjct: 44 WE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAA 101
Query: 128 VLDD-----KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSP 182
+ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG SP
Sbjct: 102 AAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASP 161
Query: 183 GESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELK 242
E +GATMSDD+++QVDS++N FDG+ DG D MGFGPL+ TE ERSL+ERVR ELKHELK
Sbjct: 162 REGSGATMSDDEDNQVDSESNMFDGN-DGSDGMGFGPLMLTEGERSLVERVRQELKHELK 220
Query: 243 Q 243
Q
Sbjct: 221 Q 221
>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7
PE=2 SV=1
Length = 291
Score = 209 bits (531), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/175 (61%), Positives = 132/175 (75%), Gaps = 4/175 (2%)
Query: 72 KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
+ K EI HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S +L Y++ A G D
Sbjct: 28 QLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDR 87
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMS 191
ELD F+ YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG + GE +GATMS
Sbjct: 88 HELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMS 147
Query: 192 DDDED---QVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
+D++D SD + D S G D GFGPL+PTESERSLMERVR ELK ELKQ
Sbjct: 148 EDEDDLPMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 201
>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1
Length = 294
Score = 204 bits (519), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/174 (62%), Positives = 134/174 (77%), Gaps = 5/174 (2%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK- 132
K EI HP+Y+QLL+AHV+CLR+ATP+DQLP I+AQLS S +L Y++ A G D+
Sbjct: 32 KGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVGFSHHDRQ 91
Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD 192
ELD F+ YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG + GE +GATMS+
Sbjct: 92 ELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSE 151
Query: 193 DDED-QVD--SDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
D++D Q+D SD + D S G D GFGPL+PTESERSLMERVR ELK ELKQ
Sbjct: 152 DEDDLQMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 204
>sp|Q94LW3|KNOS3_ORYSJ Homeobox protein knotted-1-like 3 OS=Oryza sativa subsp. japonica
GN=HOS66 PE=2 SV=1
Length = 314
Score = 196 bits (499), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 126/172 (73%), Gaps = 2/172 (1%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL--DD 131
K EI HPL EQL++AHV CLR+ATP+D LP IDAQL++S +L Y+A + D
Sbjct: 54 KGEIAVHPLCEQLVAAHVGCLRVATPIDHLPLIDAQLAQSSGLLHSYAAHHRPFLSPHDK 113
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMS 191
+ELD F+ Y++LL SF+EQLQQHVRVHA+EAVMAC ++EQSLQ LTG + E TGATMS
Sbjct: 114 QELDSFLAQYMMLLCSFREQLQQHVRVHAVEAVMACREIEQSLQDLTGATLEEGTGATMS 173
Query: 192 DDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
+D+++ D DG D MGFGPL+PT+SERSLMERVR ELK ELKQ
Sbjct: 174 EDEDETAPMLEGPMDMGSDGHDLMGFGPLMPTDSERSLMERVRQELKIELKQ 225
>sp|O04134|KNAP1_MALDO Homeobox protein knotted-1-like 1 OS=Malus domestica PE=2 SV=1
Length = 398
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 2/98 (2%)
Query: 60 NDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAK 119
ND+ E KA+I+ HP Y L+ A++ C R+ P D +P++ ++R +
Sbjct: 120 NDDHSLSSNEVEAIKAKIIAHPQYSNLVEAYMDCQRVGAPSDVVPRLS--VARQEFEARQ 177
Query: 120 YSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVR 157
S+ + D ELDQFM Y +L ++E+L + ++
Sbjct: 178 RSSGTSRETSKDPELDQFMEAYYDMLVKYREELTRPIQ 215
>sp|Q9FP29|KNOS1_ORYSJ Homeobox protein knotted-1-like 1 OS=Oryza sativa subsp. japonica
GN=OSH6 PE=2 SV=1
Length = 301
Score = 55.5 bits (132), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 15/140 (10%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDVLAKYSAVANGRVLDDK 132
KA+I GHP Y LLSA++ C ++ P P++ + L R+ A G++ D
Sbjct: 44 KAQIAGHPRYPTLLSAYIECRKVGAP----PEVASLLKEIGRERRAGGGGGGAGQIGVDP 99
Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSL-TGVSPGESTGATMS 191
ELD+FM Y +L +KE+L + EA ++ L +L +G + +T AT S
Sbjct: 100 ELDEFMEAYCRVLVRYKEELSRPFD----EAASFLSSIQTQLSNLCSGATSPPATTATHS 155
Query: 192 DD-----DEDQVDSDTNFFD 206
D+ DEDQ +T+ D
Sbjct: 156 DEMVGSSDEDQCSGETDMLD 175
>sp|P46608|HSBH1_SOYBN Homeobox protein SBH1 OS=Glycine max GN=H1 PE=2 SV=1
Length = 379
Score = 55.1 bits (131), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 60/105 (57%), Gaps = 4/105 (3%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
KA+I+ HP Y +LL+A+V+C ++ P + + +++ + + + +A + + +D
Sbjct: 125 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAATMAGGDAAAGSSCIGEDPA 184
Query: 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT 178
LDQFM Y +L ++++L + ++ EA++ +E ++LT
Sbjct: 185 LDQFMEAYCEMLTKYEQELSKPLK----EAMLFLQRIECQFKNLT 225
>sp|P46639|KNAT1_ARATH Homeobox protein knotted-1-like 1 OS=Arabidopsis thaliana GN=KNAT1
PE=1 SV=1
Length = 398
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA--QLSRSRDVLAKYSAVANGRVLDD 131
KA+I+ HP Y LL A++ C +I P D + +I A Q +R + S A+ R D
Sbjct: 135 KAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSR---D 191
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV 164
ELDQFM Y +L ++E+L + ++ AME +
Sbjct: 192 PELDQFMEAYCDMLVKYREELTRPIQ-EAMEFI 223
>sp|O04135|KNAP2_MALDO Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1
Length = 397
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
E KA+I+ HP Y LL A++ C R+ P D + ++ ++R + S+ +
Sbjct: 128 EVEAIKAKIIAHPQYSNLLEAYMDCQRVGAPSDVVARLS--VARQEFEARQRSSGTSRET 185
Query: 129 LDDKELDQFMTHYVLLLYSFKEQLQQHVR-----VHAMEAVMACWDLEQSLQSLTGVSPG 183
D ELDQFM Y +L ++E+L + ++ + +E + + L SP
Sbjct: 186 SKDPELDQFMEAYYDMLVKYREELTRPIQEAMDFMRRIETQLNMLGNNNNAPPLRIFSPS 245
Query: 184 ESTGATMSDDDEDQVDS 200
E + +E+Q +S
Sbjct: 246 EDKCEGIGSSEEEQENS 262
>sp|Q75LX7|KNOS4_ORYSJ Homeobox protein knotted-1-like 4 OS=Oryza sativa subsp. japonica
GN=OSH10 PE=2 SV=1
Length = 337
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
ET KA+I+ HPLY LL A + C ++ P P++ +LS + + + A R
Sbjct: 58 ETDAIKAKIMSHPLYPALLRAFIDCQKVGAP----PEVVGRLSA---LAGELDSRAEDRY 110
Query: 129 L----DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE 184
L D ELD+FM Y+ +L S++++L + ++ EA ++E + S T +
Sbjct: 111 LQGQSSDPELDEFMETYIDMLVSYRQELTRPIQ----EADQFFRNMEAQIDSFT-LDDNG 165
Query: 185 STGATMSDDDEDQVDSD 201
S G S+D+++ D
Sbjct: 166 SEGGNSSEDEQEAGGGD 182
>sp|Q41330|KN1_SOLLC Homeotic protein knotted-1 OS=Solanum lycopersicum GN=KN1 PE=2 SV=1
Length = 355
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 17/161 (10%)
Query: 51 KNNKNNSASNDNGRAEDWETVKC-KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQ 109
+N+ ++S G A E ++ KA+I+ HP LL A++ C ++ P P++ A+
Sbjct: 71 RNHHHDSTETSGGGAGAGEVIEALKAKIIAHPQCSNLLDAYMDCQKVGAP----PEVAAR 126
Query: 110 LSRSRDVLA--KYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMAC 167
LS R + ++ + V D ELDQFM Y +L ++E+L + ++ EA+
Sbjct: 127 LSAVRQEFEARQRRSLTDRDVSKDPELDQFMEAYYDMLVKYREELTRPLQ----EAMEFM 182
Query: 168 WDLEQSLQSLTGV------SPGESTGATMSDDDEDQVDSDT 202
+E L L S + G S++D+D +T
Sbjct: 183 QKIEAQLNMLGNAPVRIFNSEDKCEGVGSSEEDQDNSGGET 223
>sp|P24345|KN1_MAIZE Homeotic protein knotted-1 OS=Zea mays GN=KN-1 PE=2 SV=1
Length = 359
Score = 52.8 bits (125), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 79/153 (51%), Gaps = 10/153 (6%)
Query: 54 KNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR- 112
K S+ + A D E +K K I+ HP Y LL+A++ C ++ P P++ A+L+
Sbjct: 87 KAKEPSSSSPYAGDVEAIKAK--IISHPHYYSLLTAYLECNKVGAP----PEVSARLTEI 140
Query: 113 SRDVLAK-YSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLE 171
+++V A+ +A+ + ELDQFM Y +L F+E+L + ++ AME +
Sbjct: 141 AQEVEARQRTALGGLAAATEPELDQFMEAYHEMLVKFREELTRPLQ-EAMEFMRRVESQL 199
Query: 172 QSLQSLTGVSPGESTGATMSDDDEDQVDSDTNF 204
SL S++G S + S++D++ +T
Sbjct: 200 NSL-SISGRSLRNILSSGSSEEDQEGSGGETEL 231
>sp|Q41853|RSH1_MAIZE Homeobox protein rough sheath 1 OS=Zea mays GN=RS1 PE=2 SV=1
Length = 351
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%)
Query: 78 VGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR-VLDDKELDQ 136
V HP Y LL+A++ C ++ P D L ++ A + AK A A GR D ELDQ
Sbjct: 95 VAHPQYSALLAAYLDCQKVGAPPDVLERLTA-------MAAKLDASAAGRHEPRDPELDQ 147
Query: 137 FMTHYVLLLYSFKEQLQQHV-----RVHAMEAVMACW-DLEQSLQSLTGVSPGESTGATM 190
FM Y +L ++E+L + + + +EA + C S + ++ G+S G
Sbjct: 148 FMEAYCNMLVKYREELTRPIDEAMEFLKRVEAQLDCISGGGGSSSARLSLADGKSEGVGS 207
Query: 191 SDDDED 196
S+DD D
Sbjct: 208 SEDDMD 213
>sp|Q43484|KNOX3_HORVU Homeobox protein KNOX3 OS=Hordeum vulgare GN=KNOX3 PE=1 SV=1
Length = 364
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 81/160 (50%), Gaps = 13/160 (8%)
Query: 47 EEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKI 106
E K K S+S+ A D E +K K I+ HP Y LL+A++ C ++ P P++
Sbjct: 87 EACAKAAKEPSSSS---YAADVEAIKAK--IISHPHYSSLLAAYLDCQKVGAP----PEV 137
Query: 107 DAQLSR-SRDV-LAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV 164
A+L+ ++D+ L + +A+ + ELDQFM Y +L ++E+L + ++ AME +
Sbjct: 138 SARLTAVAQDLELRQRTALGGLGTATEPELDQFMEAYHEMLVKYREELTRPLQ-EAMEFL 196
Query: 165 MACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNF 204
SL S++G S S++D++ +T
Sbjct: 197 RRVETQLNSL-SISGRSLRNILSTGSSEEDQEGSGGETEL 235
>sp|O80416|KNOSC_ORYSJ Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. japonica
GN=OSH15 PE=2 SV=1
Length = 355
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
E KA+I+ HP Y LL+A++ C ++ P + L ++ A AK A GR
Sbjct: 87 EAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTA-------TAAKLDARPPGRH 139
Query: 129 -LDDKELDQFMTHYVLLLYSFKEQLQQHV 156
D ELDQFM Y +L ++E+L + +
Sbjct: 140 DARDPELDQFMEAYCNMLAKYREELTRPI 168
>sp|O65034|KNOSC_ORYSI Homeobox protein knotted-1-like 12 OS=Oryza sativa subsp. indica
GN=OSH15 PE=2 SV=2
Length = 355
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 69 ETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRV 128
E KA+I+ HP Y LL+A++ C ++ P + L ++ A AK A GR
Sbjct: 87 EAESIKAKIMAHPQYSALLAAYLDCQKVGAPPEVLERLTA-------TAAKLDARPPGRH 139
Query: 129 -LDDKELDQFMTHYVLLLYSFKEQLQQHV 156
D ELDQFM Y +L ++E+L + +
Sbjct: 140 DARDPELDQFMEAYCNMLAKYREELTRPI 168
>sp|Q10ED2|KNOS8_ORYSJ Homeobox protein knotted-1-like 8 OS=Oryza sativa subsp. japonica
GN=OSH43 PE=2 SV=1
Length = 341
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 81/204 (39%), Gaps = 63/204 (30%)
Query: 73 CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK 132
KAEI+ HP Y LL+A++ C ++ P DVL K +AV + LD+
Sbjct: 83 VKAEIMSHPQYSALLAAYLGCKKVGAPP--------------DVLTKLTAVPAAQQLDEA 128
Query: 133 -----------------ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQ 175
+LDQFM Y +L ++E+L++ + +EA +E L
Sbjct: 129 DGHPRRRHEPQRDDDPDQLDQFMDAYCSMLTRYREELERPI----LEAAEFFSRVETQLD 184
Query: 176 SLTGVSPGESTGATMSDDDEDQVDSDTNF-------FDGSLDGPDSMGFGPLVPTESERS 228
SL ES +E+Q SD + GSL G L S+R+
Sbjct: 185 SLA-----ESNCEGTGSSEEEQDPSDKQLKHQLLRKYGGSL--------GDLRQVFSKRT 231
Query: 229 LMERVRHELKHELKQVRVQNHLHW 252
++ E + +L LHW
Sbjct: 232 KKGKLPKEARQKL--------LHW 247
>sp|Q75LX9|KNOS5_ORYSJ Putative homeobox protein knotted-1-like 5 OS=Oryza sativa subsp.
japonica GN=Os03g0673500 PE=3 SV=1
Length = 337
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVL---- 129
KA+I+ HPLY LL A V C ++ P P++ +LS S V+ + R L
Sbjct: 72 KAKIMSHPLYPSLLRAFVDCKKVGAP----PEVVGRLS-SLAVVTDVPQYSGDRCLPAQQ 126
Query: 130 --DDKELDQFMTHYVLLLYSFKEQLQQHVR 157
D ELDQFM Y +L + ++L + ++
Sbjct: 127 PAADPELDQFMETYCYMLTRYGQELARPIQ 156
>sp|Q84JS6|KNAT6_ARATH Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6
PE=1 SV=1
Length = 327
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
KA+I HP Y +LL A++ C ++ P ++ + ++ R DV K V + D E
Sbjct: 86 KAKIACHPSYPRLLQAYIDCQKVGAP-PEIACLLEEIQRESDVY-KQEVVPSSCFGADPE 143
Query: 134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSL-TGV--SPGESTGATM 190
LD+FM Y +L +K L + EA +E L++L TGV + G S +
Sbjct: 144 LDEFMETYCDILVKYKSDLARPFD----EATCFLNKIEMQLRNLCTGVESARGVSEDGVI 199
Query: 191 SDDDE 195
S D+E
Sbjct: 200 SSDEE 204
>sp|P46609|KNOS6_ORYSJ Homeobox protein knotted-1-like 6 OS=Oryza sativa subsp. japonica
GN=OSH1 PE=2 SV=2
Length = 361
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 73/134 (54%), Gaps = 8/134 (5%)
Query: 73 CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDV-LAKYSAVANGRVLD 130
KA+I+ HP Y LL+A++ C ++ P P++ A+L+ ++D+ L + +A+
Sbjct: 104 IKAKIISHPHYSSLLAAYLDCQKVGAP----PEVAARLTAVAQDLELRQRTALGVLGAAT 159
Query: 131 DKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATM 190
+ ELDQFM Y +L ++E+L + ++ AME + + + + S++G S +
Sbjct: 160 EPELDQFMEAYHEMLVKYREELTRPLQ-EAMEFLRRV-ETQLNTLSISGRSLRNILSSGS 217
Query: 191 SDDDEDQVDSDTNF 204
S++D++ +T
Sbjct: 218 SEEDQEGSGGETEL 231
>sp|Q7GDL5|KNOSA_ORYSJ Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. japonica
GN=OSH71 PE=2 SV=1
Length = 311
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLD--D 131
KA+I GHP Y LLSA++ C ++ P P++ L A D
Sbjct: 56 KAQIAGHPSYPSLLSAYIECRKVGAP----PEVTTLLEEIGREGRGGGGGATAGGEIGLD 111
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSP 182
ELD+FM Y +L +KE+L + EA + L SL G +P
Sbjct: 112 PELDEFMETYCRVLERYKEELTRPFD----EAASFLTGIHTQLASLCGGAP 158
>sp|A2Y007|KNOSA_ORYSI Homeobox protein knotted-1-like 10 OS=Oryza sativa subsp. indica
GN=OSH71 PE=2 SV=2
Length = 311
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 48/111 (43%), Gaps = 10/111 (9%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLD--D 131
KA+I GHP Y LLSA++ C ++ P P++ L A D
Sbjct: 56 KAQIAGHPSYPSLLSAYIECRKVGAP----PEVTTLLEEIGREGRGGGGGATAGGEIGLD 111
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSP 182
ELD+FM Y +L +KE+L + EA + L SL G +P
Sbjct: 112 PELDEFMETYCRVLERYKEELTRPFD----EAASFLTGIHTQLASLCGGAP 158
>sp|O22299|LET6_SOLLC Homeobox protein knotted-1-like LET6 OS=Solanum lycopersicum
GN=LET6 PE=2 SV=1
Length = 355
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 71/135 (52%), Gaps = 11/135 (8%)
Query: 78 VGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQF 137
+ HP Y +LL+A+++C +I P + + +++ + S + S+ G + +D LDQF
Sbjct: 101 MAHPHYHRLLTAYLNCQKIGAPPEVVARLEEICATSATMGRSSSSSGGGIIGEDPALDQF 160
Query: 138 MTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD----- 192
M Y +L ++++L + + EA++ +E ++LT ++P S + + +
Sbjct: 161 MEAYCEMLTKYEQELSKPFK----EAMVFLSRIECQFKALT-LAPNSSHESALGEAMDRN 215
Query: 193 -DDEDQVDSDTNFFD 206
+++VD + +F D
Sbjct: 216 GSSDEEVDVNNSFID 230
>sp|P46640|KNAT2_ARATH Homeobox protein knotted-1-like 2 OS=Arabidopsis thaliana GN=KNAT2
PE=1 SV=3
Length = 310
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 60/127 (47%), Gaps = 23/127 (18%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-----SRDV--LAKYSAVANG 126
K++I HPLY +LL ++ C ++ P+ ++ I ++ R RDV L+ + A
Sbjct: 70 KSKIASHPLYPRLLQTYIDCQKVGAPM-EIACILEEIQRENHVYKRDVAPLSCFGA---- 124
Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186
D ELD+FM Y +L +K L + EA +E LQ+L G ++
Sbjct: 125 ----DPELDEFMETYCDILVKYKTDLARPFD----EATTFINKIEMQLQNLCT---GPAS 173
Query: 187 GATMSDD 193
+SDD
Sbjct: 174 ATALSDD 180
>sp|Q9M6D9|STM_BRAOL Homeobox protein SHOOT MERISTEMLESS OS=Brassica oleracea GN=STM
PE=2 SV=1
Length = 383
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 50/90 (55%), Gaps = 6/90 (6%)
Query: 70 TVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN--GR 127
++ KA+I+ HP Y +LL A+V+C ++ P P++ A+L + A +A G
Sbjct: 120 SLLVKAKIMAHPHYHRLLLAYVNCQKVGAP----PEVQARLEETCSSAAAAAASMGPTGS 175
Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHVR 157
+ +D LDQFM Y +L ++++L + +
Sbjct: 176 LGEDPGLDQFMEAYCEMLVKYEQELSKPFK 205
>sp|Q38874|STM_ARATH Homeobox protein SHOOT MERISTEMLESS OS=Arabidopsis thaliana GN=STM
PE=1 SV=2
Length = 382
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 6/86 (6%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN--GRVLDD 131
KA+I+ HP Y +LL+A+V+C ++ P P++ A+L + A +A G + +D
Sbjct: 122 KAKIMAHPHYHRLLAAYVNCQKVGAP----PEVVARLEEACSSAAAAAASMGPTGCLGED 177
Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVR 157
LDQFM Y +L ++++L + +
Sbjct: 178 PGLDQFMEAYCEMLVKYEQELSKPFK 203
>sp|Q10EC6|KNOS9_ORYSJ Homeobox protein knotted-1-like 9 OS=Oryza sativa subsp. japonica
GN=Os03g0772100 PE=2 SV=2
Length = 347
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA------QLSRSRDVLAKYSAVANGR 127
KAEI+ HP Y LL+A++ C ++ P D L K+ A QL + +
Sbjct: 82 KAEIMSHPQYSALLAAYLGCKKVGAPPDVLTKLTAVPAAQQQLDAADGHPRRRHEPRRDD 141
Query: 128 VLDDKELDQFM 138
+ D +LDQFM
Sbjct: 142 DVPDHQLDQFM 152
>sp|Q948L5|KNOS7_ORYSJ Homeobox protein knotted-1-like 7 OS=Oryza sativa subsp. japonica
GN=OSH3 PE=2 SV=1
Length = 365
Score = 39.3 bits (90), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Query: 74 KAEIVGHPLYEQLLSAHVSCLRIATP-VDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK 132
KA IV HP Y +LL+A + C ++ P A R A +A +D
Sbjct: 74 KARIVSHPRYHRLLAAFLDCHKVGCPAEAAEEIAAAARVREARQRAAAAASRMPPAPEDP 133
Query: 133 ELDQFMTHYVLLLYSFKEQLQQ 154
ELDQFM Y LL KE+L +
Sbjct: 134 ELDQFMEDYCKLLVECKEELSR 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,940,751
Number of Sequences: 539616
Number of extensions: 4743867
Number of successful extensions: 55413
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 35475
Number of HSP's gapped (non-prelim): 16059
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)