Query 025450
Match_columns 252
No_of_seqs 174 out of 260
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 10:34:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025450.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/025450hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f66c1 a.2.17.3 (C:142-206) V 73.1 3.2 0.00024 28.8 5.2 25 127-151 33-57 (65)
2 d1914a2 d.49.1.1 (A:2001-2097) 23.7 19 0.0014 26.0 2.2 19 129-147 71-89 (97)
3 d1whra_ d.68.7.1 (A:) R3H doma 17.1 63 0.0046 23.7 4.0 35 128-180 11-46 (124)
4 d1s5qb_ a.59.1.1 (B:) Sin3A {M 15.9 35 0.0026 23.6 2.1 17 159-175 9-25 (89)
5 d2f05a1 a.59.1.1 (A:1-85) Sin3 14.4 45 0.0033 22.7 2.3 18 158-175 5-22 (85)
6 d1rwta_ f.43.1.1 (A:) Chloroph 12.5 52 0.0038 25.9 2.5 24 216-239 147-170 (218)
7 d2e9xa1 a.278.1.1 (A:1-144) DN 12.1 56 0.0041 24.6 2.5 21 132-152 108-128 (144)
8 d1cxzb_ a.2.6.1 (B:) Protein k 11.3 66 0.0048 22.9 2.4 15 228-242 25-39 (86)
9 d2oz6a2 b.82.3.2 (A:9-142) Cyc 11.1 1.6E+02 0.012 19.7 4.6 28 129-156 94-121 (134)
10 d2k0bx1 a.5.2.1 (X:1-52) Seque 10.0 76 0.0055 20.7 2.2 17 97-113 1-17 (52)
No 1
>d2f66c1 a.2.17.3 (C:142-206) Vacuolar protein sorting-associated protein 37, VPS37 (SRN2) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=73.06 E-value=3.2 Score=28.83 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=21.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHH
Q 025450 127 RVLDDKELDQFMTHYVLLLYSFKEQ 151 (252)
Q Consensus 127 ~ig~DPELDqFMeaYc~mL~kYKEE 151 (252)
.+..+.|||+|.+.|.++=+.|.-.
T Consensus 33 ~~~~s~elD~Fi~qYl~~RTeYH~r 57 (65)
T d2f66c1 33 SIDSADDLDQFIKNYLDIRTQYHLR 57 (65)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999743
No 2
>d1914a2 d.49.1.1 (A:2001-2097) Signal recognition particle 14KDa protein, SRP14 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.65 E-value=19 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=15.9
Q ss_pred CCChhHHHHHHHHHHHHHH
Q 025450 129 LDDKELDQFMTHYVLLLYS 147 (252)
Q Consensus 129 g~DPELDqFMeaYc~mL~k 147 (252)
..-.+|+.|+.+|+.+|..
T Consensus 71 V~~~~~~~F~~~Y~~v~Ka 89 (97)
T d1914a2 71 VSSKEVNKFQMAYSNLLRA 89 (97)
T ss_dssp EETTSHHHHHHHHHHHHHH
T ss_pred ECHHHHHHHHHHHHHHHHh
Confidence 4456999999999999865
No 3
>d1whra_ d.68.7.1 (A:) R3H domain protein KIAA1002 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.10 E-value=63 Score=23.68 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=24.7
Q ss_pred CCCChhHHHHHHHHHHHHHHHHHHHh-hHHhhhhHHHHHHHHHHHHHHhhhhCC
Q 025450 128 VLDDKELDQFMTHYVLLLYSFKEQLQ-QHVRVHAMEAVMACWDLEQSLQSLTGV 180 (252)
Q Consensus 128 ig~DPELDqFMeaYc~mL~kYKEEL~-rP~r~~a~EA~~F~~~IE~QL~sLtg~ 180 (252)
.+.| |++||. +.|. .| .--.||-+||++|..+...
T Consensus 11 ~~~d--l~~fl~----------~~l~~~~------~dr~fil~lE~~l~~Fi~d 46 (124)
T d1whra_ 11 TGID--LHEFLV----------NTLKKNP------RDRMMLLKLEQEILEFIND 46 (124)
T ss_dssp CCSC--HHHHHH----------HHHHHCT------TTHHHHHHHHHHHHHHHHC
T ss_pred cccc--HHHHHH----------HHHHcCh------HhHHHHHHHHHHHHHHHhC
Confidence 4555 999964 4453 45 3346899999999998853
No 4
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.93 E-value=35 Score=23.57 Aligned_cols=17 Identities=12% Similarity=0.071 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHh
Q 025450 159 HAMEAVMACWDLEQSLQ 175 (252)
Q Consensus 159 ~a~EA~~F~~~IE~QL~ 175 (252)
++.+|+.|+++|-..|+
T Consensus 9 ~~~~A~~yl~kVK~~f~ 25 (89)
T d1s5qb_ 9 EFNHAINYVNKIKNRFQ 25 (89)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHc
Confidence 56777777777776664
No 5
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=14.36 E-value=45 Score=22.67 Aligned_cols=18 Identities=11% Similarity=0.062 Sum_probs=15.4
Q ss_pred hhhHHHHHHHHHHHHHHh
Q 025450 158 VHAMEAVMACWDLEQSLQ 175 (252)
Q Consensus 158 ~~a~EA~~F~~~IE~QL~ 175 (252)
|.+.+|+.|+++|-..|+
T Consensus 5 ~~~~dA~~yl~kVK~rf~ 22 (85)
T d2f05a1 5 VEFNNAISYVNKIKTRFL 22 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHc
Confidence 468899999999998885
No 6
>d1rwta_ f.43.1.1 (A:) Chlorophyll a-b binding protein {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=12.51 E-value=52 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=16.1
Q ss_pred CCCCCCCChhhhHHHHHHHHHHHH
Q 025450 216 GFGPLVPTESERSLMERVRHELKH 239 (252)
Q Consensus 216 gfgpl~pt~~eR~Lkerl~relk~ 239 (252)
+|-|+.-..++.+++++..+||||
T Consensus 147 ~fdPlg~~~~~e~~~~~k~kElkN 170 (218)
T d1rwta_ 147 SFDPLGLADDPEAFAELKVKEIKN 170 (218)
T ss_dssp GGCTTCTTCSHHHHHHHHHHHHHH
T ss_pred CccccccCCCHHHHHHHHHHHHHH
Confidence 455664445566788888888776
No 7
>d2e9xa1 a.278.1.1 (A:1-144) DNA replication complex GINS protein PSF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.12 E-value=56 Score=24.59 Aligned_cols=21 Identities=19% Similarity=0.309 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 025450 132 KELDQFMTHYVLLLYSFKEQL 152 (252)
Q Consensus 132 PELDqFMeaYc~mL~kYKEEL 152 (252)
|.=-+|...|+.+|..|+..+
T Consensus 108 ~~E~eyf~~Ys~lL~~Y~~~~ 128 (144)
T d2e9xa1 108 AEEMEWFNNYKRSLATYMRSL 128 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333457789999999998665
No 8
>d1cxzb_ a.2.6.1 (B:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.30 E-value=66 Score=22.91 Aligned_cols=15 Identities=47% Similarity=0.651 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHh
Q 025450 228 SLMERVRHELKHELK 242 (252)
Q Consensus 228 ~Lkerl~relk~elk 242 (252)
+.+++|++|+.+|||
T Consensus 25 ~~r~~lr~eI~KELK 39 (86)
T d1cxzb_ 25 LERERLRREIRKELK 39 (86)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 457778888888887
No 9
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.14 E-value=1.6e+02 Score=19.68 Aligned_cols=28 Identities=11% Similarity=0.307 Sum_probs=21.3
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHhhHH
Q 025450 129 LDDKELDQFMTHYVLLLYSFKEQLQQHV 156 (252)
Q Consensus 129 g~DPELDqFMeaYc~mL~kYKEEL~rP~ 156 (252)
-.-..++++|+.+.++...+-+.+.+-+
T Consensus 94 i~~~~~~~~~~~~~~~~~~~~~~~~~rl 121 (134)
T d2oz6a2 94 ISYAKFRELSQQDSEILYTLGSQMADRL 121 (134)
T ss_dssp EEHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence 3457888888888888888877776654
No 10
>d2k0bx1 a.5.2.1 (X:1-52) Sequestosome 1 (Sqstm1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.04 E-value=76 Score=20.74 Aligned_cols=17 Identities=24% Similarity=0.434 Sum_probs=14.7
Q ss_pred cCCCCchhhHHHHHhhh
Q 025450 97 ATPVDQLPKIDAQLSRS 113 (252)
Q Consensus 97 GAPpevl~rLd~~~~~~ 113 (252)
|+|||.=|+|.+.+.+.
T Consensus 1 ~~pp~~dp~l~~al~qM 17 (52)
T d2k0bx1 1 GSPPEADPRLIESLSQM 17 (52)
T ss_dssp CCCTTTSTTHHHHHHHH
T ss_pred CCCcccChHHHHHHHHH
Confidence 79999999999888764
Done!