BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025451
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 31.6 bits (70), Expect = 0.43, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKA 107
+ C CA K R +K EGV + I + K+ V GE +
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS 50
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 30.8 bits (68), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 67 VYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIV 102
V M C+ C VR+ L+G GV+DV + V+V
Sbjct: 25 VQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLV 60
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 62 EIVLKVYMHCEGCARKVRRCLKGFEGVEDVITD 94
E + MHCE C ++ CLK G+ + D
Sbjct: 8 EATYAIPMHCENCVNDIKACLKNVPGINSLNFD 40
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In The
Zn(Ii)-Form
Length = 73
Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSH 121
M C CARKV ++ GV V T K++V + +V +Q+ +
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGY 64
>pdb|1OPZ|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ3|A Chain A, A Core Mutation Affecting The Folding Properties Of A
Soluble Domain Of The Atpase Protein Copa From Bacillus
Subtilis
pdb|1OQ6|A Chain A, Solution Structure Of Copper-s46v Copa From Bacillus
Subtilis
Length = 76
Score = 28.9 bits (63), Expect = 2.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKAD 108
KEI ++V M C CA ++ + LK GV D + T V V + A+
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAE 54
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 28.5 bits (62), Expect = 4.0, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHR 122
M C C V + LK GVE V + + +V+G ADP ++ V+ + ++
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEG-TADPKALVQAVEEEGYK 61
>pdb|1P6T|A Chain A, Structure Characterization Of The Water Soluble Region Of
P- Type Atpase Copa From Bacillus Subtilis
Length = 151
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIV 102
KEI ++V M C CA ++ + LK GV D + T V V
Sbjct: 6 KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNV 48
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 62 EIVLKVYMHCEGCARKVRRCLKGFEGVEDVITD 94
E + HCE C ++ CLK G+ + D
Sbjct: 7 EATYAIPXHCENCVNDIKACLKNVPGINSLNFD 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.329 0.144 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,394,503
Number of Sequences: 62578
Number of extensions: 121251
Number of successful extensions: 338
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 15
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)