Query 025451
Match_columns 252
No_of_seqs 289 out of 1849
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 05:58:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025451.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025451hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0207 Cation transport ATPas 99.6 6E-15 1.3E-19 146.9 10.9 134 69-228 3-168 (951)
2 KOG0207 Cation transport ATPas 99.5 2.3E-13 5E-18 135.7 12.5 164 61-249 69-291 (951)
3 PRK10671 copA copper exporting 99.4 3.2E-12 6.9E-17 130.6 12.8 145 61-209 3-162 (834)
4 PF00403 HMA: Heavy-metal-asso 99.1 1.3E-10 2.8E-15 81.0 6.4 59 64-123 1-62 (62)
5 PF00403 HMA: Heavy-metal-asso 99.1 3.1E-10 6.6E-15 79.1 5.6 45 163-207 1-62 (62)
6 COG2608 CopZ Copper chaperone 98.9 2.6E-09 5.7E-14 77.0 6.7 64 61-125 2-68 (71)
7 COG2608 CopZ Copper chaperone 98.9 5.3E-09 1.2E-13 75.4 6.2 49 162-210 4-69 (71)
8 KOG1603 Copper chaperone [Inor 98.7 3.5E-08 7.6E-13 71.5 6.7 61 59-121 3-63 (73)
9 KOG4656 Copper chaperone for s 98.4 9.4E-07 2E-11 75.4 6.4 69 60-130 6-74 (247)
10 PRK10671 copA copper exporting 98.3 1.5E-06 3.2E-11 89.2 7.3 64 161-224 4-117 (834)
11 COG2217 ZntA Cation transport 98.3 5.8E-07 1.2E-11 90.4 4.1 47 161-208 3-67 (713)
12 KOG1603 Copper chaperone [Inor 98.2 3.5E-06 7.7E-11 60.9 5.6 52 160-211 5-70 (73)
13 KOG4656 Copper chaperone for s 97.8 7.7E-05 1.7E-09 63.9 7.6 56 160-215 7-75 (247)
14 PLN02957 copper, zinc superoxi 97.6 0.00023 5E-09 62.8 7.4 69 60-130 5-73 (238)
15 COG2217 ZntA Cation transport 97.5 0.00019 4.2E-09 72.4 6.2 64 61-126 2-69 (713)
16 PLN02957 copper, zinc superoxi 97.3 0.00053 1.2E-08 60.5 6.6 51 161-211 7-70 (238)
17 TIGR00003 copper ion binding p 97.2 0.00094 2E-08 43.4 5.5 47 162-208 4-67 (68)
18 TIGR00003 copper ion binding p 96.8 0.0076 1.7E-07 38.9 6.9 61 62-123 3-66 (68)
19 PRK11033 zntA zinc/cadmium/mer 95.5 0.029 6.2E-07 57.3 6.4 49 160-209 53-117 (741)
20 PRK11033 zntA zinc/cadmium/mer 95.2 0.048 1E-06 55.7 6.9 66 59-125 51-117 (741)
21 TIGR02052 MerP mercuric transp 85.4 3.5 7.5E-05 28.9 6.1 47 162-208 25-88 (92)
22 TIGR02052 MerP mercuric transp 82.7 7.1 0.00015 27.2 6.8 42 62-103 24-66 (92)
23 PF01206 TusA: Sulfurtransfera 68.1 13 0.00027 25.8 4.6 46 163-208 2-54 (70)
24 PRK13748 putative mercuric red 63.8 14 0.0003 36.2 5.5 45 164-208 4-64 (561)
25 COG2177 FtsX Cell division pro 60.8 30 0.00066 31.6 6.8 78 72-189 71-148 (297)
26 cd00371 HMA Heavy-metal-associ 58.4 30 0.00064 19.3 4.5 37 67-103 4-41 (63)
27 PF01883 DUF59: Domain of unkn 54.4 18 0.0004 25.2 3.4 33 61-93 34-72 (72)
28 PRK13748 putative mercuric red 53.1 39 0.00085 33.0 6.6 62 64-126 3-66 (561)
29 PRK11018 hypothetical protein; 51.1 44 0.00095 24.0 5.0 48 162-209 9-63 (78)
30 cd03420 SirA_RHOD_Pry_redox Si 41.5 51 0.0011 22.9 4.0 46 164-209 2-54 (69)
31 cd03421 SirA_like_N SirA_like_ 41.3 49 0.0011 22.7 3.8 45 164-209 2-53 (67)
32 cd00291 SirA_YedF_YeeD SirA, Y 38.0 66 0.0014 21.8 4.1 46 164-209 2-54 (69)
33 COG1888 Uncharacterized protei 35.3 47 0.001 25.1 3.1 34 176-209 23-77 (97)
34 PF02680 DUF211: Uncharacteriz 29.7 55 0.0012 24.9 2.6 35 175-209 20-75 (95)
35 PF00356 LacI: Bacterial regul 29.3 39 0.00085 21.9 1.6 33 174-208 13-45 (46)
36 COG1888 Uncharacterized protei 28.0 2.2E+02 0.0048 21.6 5.6 67 60-127 5-79 (97)
37 PF15643 Tox-PL-2: Papain fold 27.4 46 0.001 25.5 1.9 48 167-215 18-79 (100)
38 TIGR03406 FeS_long_SufT probab 26.2 68 0.0015 27.0 2.9 34 62-95 114-153 (174)
39 cd03423 SirA SirA (also known 25.8 1.6E+02 0.0034 20.3 4.4 44 167-210 6-55 (69)
40 PF14437 MafB19-deam: MafB19-l 25.8 1.1E+02 0.0025 25.0 4.1 36 60-96 99-135 (146)
41 cd03422 YedF YedF is a bacteri 25.4 1.4E+02 0.003 20.7 4.0 43 167-209 6-54 (69)
42 PRK00299 sulfur transfer prote 23.4 2.5E+02 0.0054 20.1 5.2 48 162-209 10-64 (81)
43 TIGR02945 SUF_assoc FeS assemb 22.7 74 0.0016 23.5 2.3 21 76-96 58-78 (99)
44 COG0841 AcrB Cation/multidrug 22.7 3.1E+02 0.0066 29.6 7.6 34 174-207 157-212 (1009)
No 1
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=6e-15 Score=146.91 Aligned_cols=134 Identities=19% Similarity=0.297 Sum_probs=116.0
Q ss_pred ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc-CChhhhhhhhhccccccccccCCCCCCCchhHhhhhhcCCC
Q 025451 69 MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK-ADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAP 147 (252)
Q Consensus 69 M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~-~d~~~i~~~I~k~~G~~a~l~s~~~~~~~~~~~~~~~e~~~ 147 (252)
|+|..|++.|+.++++.+||.++.+++.+++++|.++. .+++.+.+.|+ .+||.+.+.+...
T Consensus 3 mtc~ac~~si~~~~~~~~g~~~i~vsl~~~~~~v~~~~~~~~~~i~~~ie-d~gf~~~~~~~~~---------------- 65 (951)
T KOG0207|consen 3 MTCSACSNSIEKAISRKPGVQKIEVSLAQKRANVSYDNIVSPESIKETIE-DMGFEASLLSDSE---------------- 65 (951)
T ss_pred ccHHHHhhhHHHHHhcCCCceeEEEEeccccceEEEeeccCHHHHHHHhh-cccceeeecccCc----------------
Confidence 99999999999999999999999999999999997643 48899999999 6999988764322
Q ss_pred CCCCCCCCCCceEEEEEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCCHHHHHHHHHhcCCCeE-
Q 025451 148 PKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFFPQKLFRSFYFFGVVYF- 209 (252)
Q Consensus 148 ~~~~~~~~~~~~~~~~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~~~~L~~aI~~aGY~a~- 209 (252)
....+.+|.| ||||+||++.||+.|++.+||.+ ..++++.+.+.++++||.+.
T Consensus 66 ---------~~~~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~ 136 (951)
T KOG0207|consen 66 ---------ITASKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAEL 136 (951)
T ss_pred ---------cccceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCcccee
Confidence 1223678999 99999999999999999999999 46788999999999999763
Q ss_pred -------------EeeccchhHhhHHhhhhcc
Q 025451 210 -------------FFFRFMQFCSCILFNYLLL 228 (252)
Q Consensus 210 -------------~~~~~~~~~~~~~~~~l~~ 228 (252)
+.+.||+|++|+.-+.=.+
T Consensus 137 i~~~~~~~~~~i~L~v~g~~c~s~~~~ie~~l 168 (951)
T KOG0207|consen 137 IESVNGNSNQKIYLDVLGMTCASCVSKIESIL 168 (951)
T ss_pred hhcccCCCCCcEEEEeecccccchhhhhHHHH
Confidence 5699999999999876553
No 2
>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=99.49 E-value=2.3e-13 Score=135.74 Aligned_cols=164 Identities=20% Similarity=0.256 Sum_probs=126.0
Q ss_pred ceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc--CChhhhhhhhhccccccccccCCCCCCCchh
Q 025451 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQVELLSPIPKPTAAE 137 (252)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~--~d~~~i~~~I~k~~G~~a~l~s~~~~~~~~~ 137 (252)
.+..+++. |+|.+|++.|++.|+++.||.++.+.+...++.+.++. .+++.+.+.++ +.||.+.++.....
T Consensus 69 ~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie-~~gf~a~~i~~~~~----- 142 (951)
T KOG0207|consen 69 SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIE-DLGFSAELIESVNG----- 142 (951)
T ss_pred ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHH-hcCccceehhcccC-----
Confidence 36789999 99999999999999999999999999999999997542 47888999999 79998876532210
Q ss_pred HhhhhhcCCCCCCCCCCCCCceEEEEEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCCHHHHHHH
Q 025451 138 EEKKAEEKAPPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFFPQKLFRS 200 (252)
Q Consensus 138 ~~~~~~e~~~~~~~~~~~~~~~~~~~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~~~~L~~a 200 (252)
.....+.|.| ||+|++|+.+||+.|.+++||.+ ..+.+.++.+.
T Consensus 143 -------------------~~~~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ 203 (951)
T KOG0207|consen 143 -------------------NSNQKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKA 203 (951)
T ss_pred -------------------CCCCcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHH
Confidence 0113567888 99999999999999999999998 45778999999
Q ss_pred HHhcCCCeEEee-------------------ccchhHhhHHhhhhcc-----hhhhh---------------cccccccc
Q 025451 201 FYFFGVVYFFFF-------------------RFMQFCSCILFNYLLL-----PQFNC---------------DLTAYPLT 241 (252)
Q Consensus 201 I~~aGY~a~~~~-------------------~~~~~~~~~~~~~l~~-----~~~~~---------------~~~~~~~~ 241 (252)
|+..||.+.... +.-++-++.+.+|+|+ |++.. +.+.+.|.
T Consensus 204 ie~~~~~~~~~~~~~~~~~~~l~~~~ei~~w~~~fl~s~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (951)
T KOG0207|consen 204 IEETGFEASVRPYGDTTFKNSLKHKEEIRKWKRPFLISLGFSLPVSFAMIICPPLAWILALLVPFLPGLSYGNSLSFVLA 283 (951)
T ss_pred HHhhcccceeeeccccchhhhhhhhhHHHhcchHHHHHHHHHHHHHHHHHHhccchhhhhhhccccccchhhhHHHhhhh
Confidence 999999853221 1223557777777774 22222 33445667
Q ss_pred ceeeeccC
Q 025451 242 LVWQFGTN 249 (252)
Q Consensus 242 ~~~~~~~~ 249 (252)
.++||+..
T Consensus 284 ~~vqf~~G 291 (951)
T KOG0207|consen 284 TPVQFVGG 291 (951)
T ss_pred eeeEEecc
Confidence 88998753
No 3
>PRK10671 copA copper exporting ATPase; Provisional
Probab=99.38 E-value=3.2e-12 Score=130.56 Aligned_cols=145 Identities=17% Similarity=0.230 Sum_probs=99.3
Q ss_pred ceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhccccccccccCCCCCCCchhHh
Q 025451 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEE 139 (252)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G~~a~l~s~~~~~~~~~~~ 139 (252)
++..|.|+ |+|++|+.+|+++|++++||.++.+|+. +..+.+.. +.+.+...++ .+||.+...+....+......
T Consensus 3 ~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~-~~~~i~~~i~-~~Gy~~~~~~~~~~~~~~~~~ 78 (834)
T PRK10671 3 QTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTA-SAEALIETIK-QAGYDASVSHPKAKPLTESSI 78 (834)
T ss_pred eEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecC-CHHHHHHHHH-hcCCccccccccccccccccc
Confidence 46889999 9999999999999999999999999994 45555554 8889999999 799998765321110000000
Q ss_pred hhhhcCCCCCCCCCCCCCceEEEEEEe-cCCChhhHHHHHHHHhcCCCccc-------------CCCCHHHHHHHHHhcC
Q 025451 140 KKAEEKAPPKPEEKKEEPQVIIVVLKV-HMHCEGCSLEIKKRILRMEGVFF-------------SFFFPQKLFRSFYFFG 205 (252)
Q Consensus 140 ~~~~e~~~~~~~~~~~~~~~~~~~L~V-GMtCasCa~~IEkaL~k~~GV~s-------------g~~~~~~L~~aI~~aG 205 (252)
..+..+.........+.....+..+.+ ||+|++|++.|++.|.+++||.+ +..+..++.+.+.++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~G 158 (834)
T PRK10671 79 PSEALTAASEELPAATADDDDSQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAG 158 (834)
T ss_pred CchhhhhhhhhccccccCcCceEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcC
Confidence 000000000000000000112456888 99999999999999999999876 2346788889999999
Q ss_pred CCeE
Q 025451 206 VVYF 209 (252)
Q Consensus 206 Y~a~ 209 (252)
|.+.
T Consensus 159 y~a~ 162 (834)
T PRK10671 159 YGAE 162 (834)
T ss_pred CCcc
Confidence 9764
No 4
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.14 E-value=1.3e-10 Score=81.01 Aligned_cols=59 Identities=34% Similarity=0.577 Sum_probs=52.9
Q ss_pred EEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc--CChhhhhhhhhcccccc
Q 025451 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 123 (252)
Q Consensus 64 ~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~--~d~~~i~~~I~k~~G~~ 123 (252)
+|+|. |+|++|+++|+++|.+++||.++.+|+.+++++|.++. .+++.|.+.|+ ++||+
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~-~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIE-KAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHH-HTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHH-HhCcC
Confidence 57898 99999999999999999999999999999999998753 24589999999 69984
No 5
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=99.06 E-value=3.1e-10 Score=79.09 Aligned_cols=45 Identities=27% Similarity=0.425 Sum_probs=40.6
Q ss_pred EEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCCHHHHHHHHHhcCCC
Q 025451 163 VLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFFPQKLFRSFYFFGVV 207 (252)
Q Consensus 163 ~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~~~~L~~aI~~aGY~ 207 (252)
+|.| ||+|++|+++|+++|++++||.+ ..+++++|.++|+++||.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~ 62 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE 62 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence 4788 99999999999999999999988 335679999999999994
No 6
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.94 E-value=2.6e-09 Score=77.04 Aligned_cols=64 Identities=25% Similarity=0.426 Sum_probs=55.2
Q ss_pred ceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc--CChhhhhhhhhcccccccc
Q 025451 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQVE 125 (252)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~--~d~~~i~~~I~k~~G~~a~ 125 (252)
....|+|. |+|.+|+.+|+++|.+++||.++.+|+..+++.|..+. .+.+.|.+.|. .+||.+.
T Consensus 2 ~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~-~aGy~~~ 68 (71)
T COG2608 2 MKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIE-DAGYKVE 68 (71)
T ss_pred ceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHH-HcCCCee
Confidence 45789999 99999999999999999999999999999777765321 38899999999 6999864
No 7
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.87 E-value=5.3e-09 Score=75.45 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=44.4
Q ss_pred EEEEe-cCCChhhHHHHHHHHhcCCCccc---------------C-CCCHHHHHHHHHhcCCCeEE
Q 025451 162 VVLKV-HMHCEGCSLEIKKRILRMEGVFF---------------S-FFFPQKLFRSFYFFGVVYFF 210 (252)
Q Consensus 162 ~~L~V-GMtCasCa~~IEkaL~k~~GV~s---------------g-~~~~~~L~~aI~~aGY~a~~ 210 (252)
..|.| ||||.+|+.+|+++|.+++||.+ + .++.++|+++|.++||....
T Consensus 4 ~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~ 69 (71)
T COG2608 4 TTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEE 69 (71)
T ss_pred EEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeee
Confidence 56888 99999999999999999999988 3 57889999999999998754
No 8
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.73 E-value=3.5e-08 Score=71.48 Aligned_cols=61 Identities=54% Similarity=0.917 Sum_probs=55.7
Q ss_pred CCceEEEEEeccchhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhcccc
Q 025451 59 PPKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSH 121 (252)
Q Consensus 59 ~~~~v~l~V~M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G 121 (252)
..+..++.+.|||.+|..+|++.|+.+.||.++.+|...++++|.+.. ++..++..+++ .|
T Consensus 3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~-~p~~vl~~l~k-~~ 63 (73)
T KOG1603|consen 3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNV-DPVKLLKKLKK-TG 63 (73)
T ss_pred CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEec-CHHHHHHHHHh-cC
Confidence 356788888999999999999999999999999999999999999986 99999999984 44
No 9
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=98.35 E-value=9.4e-07 Score=75.45 Aligned_cols=69 Identities=28% Similarity=0.475 Sum_probs=62.3
Q ss_pred CceEEEEEeccchhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhccccccccccCCC
Q 025451 60 PKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPI 130 (252)
Q Consensus 60 ~~~v~l~V~M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G~~a~l~s~~ 130 (252)
.-+..|.|.|+|.+|++.|+..|..++||.++.+|+..+.+.|.+.. .+..|.+.++ .+|.++.+....
T Consensus 6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~-p~s~i~~~le-~tGr~Avl~G~G 74 (247)
T KOG4656|consen 6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSV-PPSEIQNTLE-NTGRDAVLRGAG 74 (247)
T ss_pred ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccC-ChHHHHHHHH-hhChheEEecCC
Confidence 35678999999999999999999999999999999999999999875 8899999999 799998877654
No 10
>PRK10671 copA copper exporting ATPase; Provisional
Probab=98.28 E-value=1.5e-06 Score=89.25 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=56.2
Q ss_pred EEEEEe-cCCChhhHHHHHHHHhcCCCccc-----------CCCCHHHHHHHHHhcCCCeE-------------------
Q 025451 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVFF-----------SFFFPQKLFRSFYFFGVVYF------------------- 209 (252)
Q Consensus 161 ~~~L~V-GMtCasCa~~IEkaL~k~~GV~s-----------g~~~~~~L~~aI~~aGY~a~------------------- 209 (252)
+.+|.| ||||.+|+.+|+++|++++||.+ +..+.+.|.++|+++||.+.
T Consensus 4 ~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~~~~~~~~~~~~~~~~ 83 (834)
T PRK10671 4 TIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSITEAHVTGTASAEALIETIKQAGYDASVSHPKAKPLTESSIPSEAL 83 (834)
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeeeEEEEEecCCHHHHHHHHHhcCCcccccccccccccccccCchhh
Confidence 467999 99999999999999999999997 45688999999999999764
Q ss_pred -------------------EeeccchhHhhHHhh
Q 025451 210 -------------------FFFRFMQFCSCILFN 224 (252)
Q Consensus 210 -------------------~~~~~~~~~~~~~~~ 224 (252)
+.+.||+|++|+..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~V~Gm~Ca~Ca~~I 117 (834)
T PRK10671 84 TAASEELPAATADDDDSQQLLLSGMSCASCVSRV 117 (834)
T ss_pred hhhhhhccccccCcCceEEEEeCCcCcHHHHHHH
Confidence 348899999998875
No 11
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=98.28 E-value=5.8e-07 Score=90.35 Aligned_cols=47 Identities=21% Similarity=0.272 Sum_probs=40.8
Q ss_pred EEEEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCC-HHHHHHHHHhcCCCe
Q 025451 161 IVVLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFF-PQKLFRSFYFFGVVY 208 (252)
Q Consensus 161 ~~~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~-~~~L~~aI~~aGY~a 208 (252)
+..|.| ||||++|+++|| +|++++||.+ ...+ ++++..+|++.||.+
T Consensus 3 ~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~ 67 (713)
T COG2217 3 ETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSA 67 (713)
T ss_pred eeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccc
Confidence 356889 999999999999 9999999988 2345 789999999999964
No 12
>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]
Probab=98.19 E-value=3.5e-06 Score=60.93 Aligned_cols=52 Identities=35% Similarity=0.549 Sum_probs=45.5
Q ss_pred EEEEEEecCCChhhHHHHHHHHhcCCCccc-------------CCCCHHHHHHHHHhcC-CCeEEe
Q 025451 160 IIVVLKVHMHCEGCSLEIKKRILRMEGVFF-------------SFFFPQKLFRSFYFFG-VVYFFF 211 (252)
Q Consensus 160 ~~~~L~VGMtCasCa~~IEkaL~k~~GV~s-------------g~~~~~~L~~aI~~aG-Y~a~~~ 211 (252)
...++.+.|||.+|...|.+.|+++.||.+ |.+++..|++.|++.| ....++
T Consensus 5 ~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~ 70 (73)
T KOG1603|consen 5 KTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELW 70 (73)
T ss_pred cEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEe
Confidence 346678899999999999999999999988 7899999999999988 555554
No 13
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=97.81 E-value=7.7e-05 Score=63.92 Aligned_cols=56 Identities=16% Similarity=0.135 Sum_probs=48.6
Q ss_pred EEEEEEecCCChhhHHHHHHHHhcCCCccc-------------CCCCHHHHHHHHHhcCCCeEEeeccc
Q 025451 160 IIVVLKVHMHCEGCSLEIKKRILRMEGVFF-------------SFFFPQKLFRSFYFFGVVYFFFFRFM 215 (252)
Q Consensus 160 ~~~~L~VGMtCasCa~~IEkaL~k~~GV~s-------------g~~~~~~L~~aI~~aGY~a~~~~~~~ 215 (252)
-+..|.|-|||.+|++.|...|..++||.+ +...+.+|..+|+..|-.+.+.-.|-
T Consensus 7 ~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~ 75 (247)
T KOG4656|consen 7 YEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGK 75 (247)
T ss_pred eeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCc
Confidence 356788999999999999999999999998 66778999999999999987764433
No 14
>PLN02957 copper, zinc superoxide dismutase
Probab=97.57 E-value=0.00023 Score=62.83 Aligned_cols=69 Identities=26% Similarity=0.371 Sum_probs=59.1
Q ss_pred CceEEEEEeccchhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhccccccccccCCC
Q 025451 60 PKEIVLKVYMHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPI 130 (252)
Q Consensus 60 ~~~v~l~V~M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G~~a~l~s~~ 130 (252)
..++.|.+.|+|.+|+.+|++.|.+++||.++.+++..+++.|.+.. +...+...++ .+||.+.+++..
T Consensus 5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~-~~~~I~~aIe-~~Gy~a~~~~~~ 73 (238)
T PLN02957 5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSS-PVKAMTAALE-QTGRKARLIGQG 73 (238)
T ss_pred cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecC-CHHHHHHHHH-HcCCcEEEecCC
Confidence 35566777899999999999999999999999999999999998754 7788888888 799998776543
No 15
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=97.47 E-value=0.00019 Score=72.39 Aligned_cols=64 Identities=28% Similarity=0.505 Sum_probs=54.5
Q ss_pred ceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc--CC-hhhhhhhhhccccccccc
Q 025451 61 KEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--AD-PLKVLDRVQRKSHRQVEL 126 (252)
Q Consensus 61 ~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~--~d-~~~i~~~I~k~~G~~a~l 126 (252)
.+..|.|. |+|++|+.+|+ +|++++||..+.+|+.++++.|.++. .+ .+.+...+. ..||.+..
T Consensus 2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~-~~gy~~~~ 69 (713)
T COG2217 2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVE-KAGYSARL 69 (713)
T ss_pred ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHH-hcCccccc
Confidence 35789999 99999999999 99999999999999999999997642 14 577888888 68997653
No 16
>PLN02957 copper, zinc superoxide dismutase
Probab=97.33 E-value=0.00053 Score=60.54 Aligned_cols=51 Identities=22% Similarity=0.315 Sum_probs=43.1
Q ss_pred EEEEEecCCChhhHHHHHHHHhcCCCccc-------------CCCCHHHHHHHHHhcCCCeEEe
Q 025451 161 IVVLKVHMHCEGCSLEIKKRILRMEGVFF-------------SFFFPQKLFRSFYFFGVVYFFF 211 (252)
Q Consensus 161 ~~~L~VGMtCasCa~~IEkaL~k~~GV~s-------------g~~~~~~L~~aI~~aGY~a~~~ 211 (252)
++.|.++|+|.+|+.+|++.|++++||.+ .......|...|+++||.+.++
T Consensus 7 ~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~ 70 (238)
T PLN02957 7 LTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLI 70 (238)
T ss_pred EEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEe
Confidence 45577799999999999999999999886 2446788999999999987544
No 17
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=97.23 E-value=0.00094 Score=43.39 Aligned_cols=47 Identities=21% Similarity=0.225 Sum_probs=37.1
Q ss_pred EEEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCCHHHHHHHHHhcCCCe
Q 025451 162 VVLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFFPQKLFRSFYFFGVVY 208 (252)
Q Consensus 162 ~~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~~~~L~~aI~~aGY~a 208 (252)
..+.| ||+|.+|++.|++.+.+++||.. +..+...+...+...||.+
T Consensus 4 ~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 67 (68)
T TIGR00003 4 FTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYEV 67 (68)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCCc
Confidence 45788 99999999999999999999875 1235566777778888854
No 18
>TIGR00003 copper ion binding protein. This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.
Probab=96.80 E-value=0.0076 Score=38.90 Aligned_cols=61 Identities=20% Similarity=0.396 Sum_probs=46.7
Q ss_pred eEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc--CChhhhhhhhhcccccc
Q 025451 62 EIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK--ADPLKVLDRVQRKSHRQ 123 (252)
Q Consensus 62 ~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~--~d~~~i~~~I~k~~G~~ 123 (252)
+..+.+. ++|..|+..++..+...+++....+++....+.+.+.. .+...+...+. ..||.
T Consensus 3 ~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~ 66 (68)
T TIGR00003 3 KFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAIL-DAGYE 66 (68)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHH-HcCCC
Confidence 4668898 99999999999999999999999999999988886521 14444544454 45654
No 19
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.49 E-value=0.029 Score=57.33 Aligned_cols=49 Identities=16% Similarity=0.226 Sum_probs=39.6
Q ss_pred EEEEEEe-cCCChhhHHHHHHHHhcCCCccc---------------CCCCHHHHHHHHHhcCCCeE
Q 025451 160 IIVVLKV-HMHCEGCSLEIKKRILRMEGVFF---------------SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 160 ~~~~L~V-GMtCasCa~~IEkaL~k~~GV~s---------------g~~~~~~L~~aI~~aGY~a~ 209 (252)
.+..+.+ ||+|++|++.|++.+.+++||.+ ... .+.+...+.+.||.+.
T Consensus 53 ~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~-~~~I~~aI~~~Gy~a~ 117 (741)
T PRK11033 53 TRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDI-RAQVESAVQKAGFSLR 117 (741)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccc-hHHHHHHHHhcccccc
Confidence 3556888 99999999999999999999876 111 2567888999999863
No 20
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=95.18 E-value=0.048 Score=55.71 Aligned_cols=66 Identities=29% Similarity=0.408 Sum_probs=51.8
Q ss_pred CCceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhcccccccc
Q 025451 59 PPKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVE 125 (252)
Q Consensus 59 ~~~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G~~a~ 125 (252)
...+..+++. |+|.+|+..+++.+.+++||.++.+++.++++.+.++......+...+. ..||.+.
T Consensus 51 ~~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~-~~Gy~a~ 117 (741)
T PRK11033 51 SGTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQ-KAGFSLR 117 (741)
T ss_pred CCceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHH-hcccccc
Confidence 4456788899 9999999999999999999999999999999888643201245555666 5788754
No 21
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=85.44 E-value=3.5 Score=28.90 Aligned_cols=47 Identities=21% Similarity=0.287 Sum_probs=33.9
Q ss_pred EEEEe-cCCChhhHHHHHHHHhcCCCccc----------------CCCCHHHHHHHHHhcCCCe
Q 025451 162 VVLKV-HMHCEGCSLEIKKRILRMEGVFF----------------SFFFPQKLFRSFYFFGVVY 208 (252)
Q Consensus 162 ~~L~V-GMtCasCa~~IEkaL~k~~GV~s----------------g~~~~~~L~~aI~~aGY~a 208 (252)
..+.+ ||+|..|...++..+...+||.. +..+...+...+.+.||..
T Consensus 25 ~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 88 (92)
T TIGR02052 25 VTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPS 88 (92)
T ss_pred EEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCe
Confidence 34667 99999999999999999998664 1124444555566777764
No 22
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=82.67 E-value=7.1 Score=27.22 Aligned_cols=42 Identities=29% Similarity=0.490 Sum_probs=34.1
Q ss_pred eEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEee
Q 025451 62 EIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (252)
Q Consensus 62 ~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~ 103 (252)
++.+.+. ++|..|...++..+....|+....+++......+.
T Consensus 24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (92)
T TIGR02052 24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVT 66 (92)
T ss_pred EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEE
Confidence 4567777 99999999999999999998888777777665554
No 23
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=68.14 E-value=13 Score=25.82 Aligned_cols=46 Identities=20% Similarity=0.121 Sum_probs=36.4
Q ss_pred EEEe-cCCChhhHHHHHHHHhcC-CC-ccc----CCCCHHHHHHHHHhcCCCe
Q 025451 163 VLKV-HMHCEGCSLEIKKRILRM-EG-VFF----SFFFPQKLFRSFYFFGVVY 208 (252)
Q Consensus 163 ~L~V-GMtCasCa~~IEkaL~k~-~G-V~s----g~~~~~~L~~aI~~aGY~a 208 (252)
+|.+ |+.|....-.+.++|.++ +| +.. ...+..+|....+..||..
T Consensus 2 ~lD~rg~~CP~Pll~~~~~l~~l~~G~~l~v~~d~~~~~~di~~~~~~~g~~~ 54 (70)
T PF01206_consen 2 TLDLRGLSCPMPLLKAKKALKELPPGEVLEVLVDDPAAVEDIPRWCEENGYEV 54 (70)
T ss_dssp EEECSS-STTHHHHHHHHHHHTSGTT-EEEEEESSTTHHHHHHHHHHHHTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHhcCCCCEEEEEECCccHHHHHHHHHHHCCCEE
Confidence 4667 999999999999999997 44 121 4556789999999999974
No 24
>PRK13748 putative mercuric reductase; Provisional
Probab=63.81 E-value=14 Score=36.16 Aligned_cols=45 Identities=24% Similarity=0.365 Sum_probs=34.7
Q ss_pred EEe-cCCChhhHHHHHHHHhcCCCccc---------------CCCCHHHHHHHHHhcCCCe
Q 025451 164 LKV-HMHCEGCSLEIKKRILRMEGVFF---------------SFFFPQKLFRSFYFFGVVY 208 (252)
Q Consensus 164 L~V-GMtCasCa~~IEkaL~k~~GV~s---------------g~~~~~~L~~aI~~aGY~a 208 (252)
+.+ ||+|++|+..++..+..++|+.. +..+...+...+.+.||..
T Consensus 4 i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~ 64 (561)
T PRK13748 4 LKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRA 64 (561)
T ss_pred EEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCee
Confidence 557 99999999999999999999764 1124456667778888864
No 25
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=60.82 E-value=30 Score=31.62 Aligned_cols=78 Identities=21% Similarity=0.104 Sum_probs=50.3
Q ss_pred hhHHHHHHHHhcCCCCceeeecccccceEEeecccCChhhhhhhhhccccccccccCCCCCCCchhHhhhhhcCCCCCCC
Q 025451 72 EGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEKADPLKVLDRVQRKSHRQVELLSPIPKPTAAEEEKKAEEKAPPKPE 151 (252)
Q Consensus 72 ~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~~d~~~i~~~I~k~~G~~a~l~s~~~~~~~~~~~~~~~e~~~~~~~ 151 (252)
..|+..++..+.+++||.++..- +.++-.+.+++..|+. ........
T Consensus 71 ~~~~~~v~~~i~~~~gV~~v~~~-------------sre~~l~~L~~~lg~~-~~~~l~~n------------------- 117 (297)
T COG2177 71 QDDAALVREKIEGIPGVKSVRFI-------------SREEALKELQPWLGFG-ALLMLDEN------------------- 117 (297)
T ss_pred hHHHHHHHHHHhcCCCcceEEEe-------------CHHHHHHHHHHHcCch-hhhcCCCC-------------------
Confidence 88999999999999999877652 5566666555456764 21110000
Q ss_pred CCCCCCceEEEEEEecCCChhhHHHHHHHHhcCCCccc
Q 025451 152 EKKEEPQVIIVVLKVHMHCEGCSLEIKKRILRMEGVFF 189 (252)
Q Consensus 152 ~~~~~~~~~~~~L~VGMtCasCa~~IEkaL~k~~GV~s 189 (252)
|-...+.+.+ +=..-...+.++|++++||.+
T Consensus 118 -----PLP~~~vV~~--~~p~~~~~i~~~l~~l~gV~~ 148 (297)
T COG2177 118 -----PLPDVFVVTP--DDPPQVKAIAAALRDLPGVAE 148 (297)
T ss_pred -----CCCceEEEEe--CCCccHHHHHHHHHcCcccee
Confidence 0111222333 226667899999999999998
No 26
>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones. HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.
Probab=58.42 E-value=30 Score=19.28 Aligned_cols=37 Identities=41% Similarity=0.697 Sum_probs=27.6
Q ss_pred Ee-ccchhHHHHHHHHhcCCCCceeeecccccceEEee
Q 025451 67 VY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVK 103 (252)
Q Consensus 67 V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~ 103 (252)
+. +.|..|...+...+....|+.....++......+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 41 (63)
T cd00371 4 VEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVE 41 (63)
T ss_pred ECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEE
Confidence 45 88999999999888888887766666655554443
No 27
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=54.40 E-value=18 Score=25.18 Aligned_cols=33 Identities=21% Similarity=0.493 Sum_probs=21.4
Q ss_pred ceEEEEEeccchhHH------HHHHHHhcCCCCceeeec
Q 025451 61 KEIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVIT 93 (252)
Q Consensus 61 ~~v~l~V~M~C~~Ca------~~Ie~aL~~l~GV~~v~v 93 (252)
.++.+.+.+...+|. ..|+.+|+.++||.++.|
T Consensus 34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 345555555555555 668889999999988764
No 28
>PRK13748 putative mercuric reductase; Provisional
Probab=53.10 E-value=39 Score=33.00 Aligned_cols=62 Identities=23% Similarity=0.328 Sum_probs=43.4
Q ss_pred EEEEe-ccchhHHHHHHHHhcCCCCceeeecccccceEEeeccc-CChhhhhhhhhccccccccc
Q 025451 64 VLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCKTHKVIVKGEK-ADPLKVLDRVQRKSHRQVEL 126 (252)
Q Consensus 64 ~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~~~~v~V~~~~-~d~~~i~~~I~k~~G~~a~l 126 (252)
.+.+. |+|.+|..+++..+...+++....+++......+.... .+...+...+. ..|+....
T Consensus 3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~-~~g~~~~~ 66 (561)
T PRK13748 3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVA-GLGYRATL 66 (561)
T ss_pred EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHH-HcCCeeec
Confidence 35577 99999999999999999998888888888776665311 13344444444 46665443
No 29
>PRK11018 hypothetical protein; Provisional
Probab=51.06 E-value=44 Score=24.04 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=39.5
Q ss_pred EEEEe-cCCChhhHHHHHHHHhcCC-Cc-cc----CCCCHHHHHHHHHhcCCCeE
Q 025451 162 VVLKV-HMHCEGCSLEIKKRILRME-GV-FF----SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 162 ~~L~V-GMtCasCa~~IEkaL~k~~-GV-~s----g~~~~~~L~~aI~~aGY~a~ 209 (252)
.+|.+ |..|.--+-+..++|.+++ |= .. +..+..+|....++.||...
T Consensus 9 ~~lD~rG~~CP~Pvl~~kk~l~~l~~G~~L~V~~d~~~a~~di~~~~~~~G~~v~ 63 (78)
T PRK11018 9 YRLDMVGEPCPYPAVATLEALPQLKKGEILEVVSDCPQSINNIPLDARNHGYTVL 63 (78)
T ss_pred eeEECCCCcCCHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 56777 9999999999999999996 51 11 45667899999999999864
No 30
>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.
Probab=41.53 E-value=51 Score=22.93 Aligned_cols=46 Identities=20% Similarity=0.244 Sum_probs=37.3
Q ss_pred EEe-cCCChhhHHHHHHHHhcCC-C-ccc----CCCCHHHHHHHHHhcCCCeE
Q 025451 164 LKV-HMHCEGCSLEIKKRILRME-G-VFF----SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 164 L~V-GMtCasCa~~IEkaL~k~~-G-V~s----g~~~~~~L~~aI~~aGY~a~ 209 (252)
|.+ |+.|.-=+-+..++|.+++ | +.. ...+..+|....+..||...
T Consensus 2 lD~rG~~CP~Pvl~~kkal~~l~~G~~l~V~~d~~~a~~di~~~~~~~G~~~~ 54 (69)
T cd03420 2 VDACGLQCPGPILKLKKEIDKLQDGEQLEVKASDPGFARDAQAWCKSTGNTLI 54 (69)
T ss_pred cccCCCcCCHHHHHHHHHHHcCCCCCEEEEEECCccHHHHHHHHHHHcCCEEE
Confidence 445 9999999999999999986 3 222 55667899999999999874
No 31
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=41.27 E-value=49 Score=22.66 Aligned_cols=45 Identities=16% Similarity=0.126 Sum_probs=34.7
Q ss_pred EEe-cCCChhhHHHHHHHHhcCC-C-ccc----CCCCHHHHHHHHHhcCCCeE
Q 025451 164 LKV-HMHCEGCSLEIKKRILRME-G-VFF----SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 164 L~V-GMtCasCa~~IEkaL~k~~-G-V~s----g~~~~~~L~~aI~~aGY~a~ 209 (252)
|.+ |+.|.--.-...++| ++. | +.. +..+..+|....++.||...
T Consensus 2 lD~rG~~CP~P~l~~k~al-~~~~g~~l~v~~d~~~s~~~i~~~~~~~G~~~~ 53 (67)
T cd03421 2 IDARGLACPQPVIKTKKAL-ELEAGGEIEVLVDNEVAKENVSRFAESRGYEVS 53 (67)
T ss_pred cccCCCCCCHHHHHHHHHH-hcCCCCEEEEEEcChhHHHHHHHHHHHcCCEEE
Confidence 345 999999999999999 653 3 222 44556899999999999874
No 32
>cd00291 SirA_YedF_YeeD SirA, YedF, and YeeD. Two-layered alpha/beta sandwich domain. SirA (also known as UvrY, and YhhP) belongs to a family of bacterial two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=38.05 E-value=66 Score=21.81 Aligned_cols=46 Identities=13% Similarity=-0.017 Sum_probs=36.1
Q ss_pred EEe-cCCChhhHHHHHHHHhcCCCccc------CCCCHHHHHHHHHhcCCCeE
Q 025451 164 LKV-HMHCEGCSLEIKKRILRMEGVFF------SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 164 L~V-GMtCasCa~~IEkaL~k~~GV~s------g~~~~~~L~~aI~~aGY~a~ 209 (252)
|.. |+.|..=.-++.++|.+++.=.. ...+..+|...++..||...
T Consensus 2 lD~rg~~CP~Pl~~~~~~l~~l~~g~~l~v~~d~~~~~~~i~~~~~~~g~~~~ 54 (69)
T cd00291 2 LDLRGLPCPLPVLKTKKALEKLKSGEVLEVLLDDPGAVEDIPAWAKETGHEVL 54 (69)
T ss_pred ccccCCcCCHHHHHHHHHHhcCCCCCEEEEEecCCcHHHHHHHHHHHcCCEEE
Confidence 344 89999999999999999763222 34567899999999999854
No 33
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=35.34 E-value=47 Score=25.12 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCccc---------------------CCCCHHHHHHHHHhcCCCeE
Q 025451 176 EIKKRILRMEGVFF---------------------SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 176 ~IEkaL~k~~GV~s---------------------g~~~~~~L~~aI~~aGY~a~ 209 (252)
.+-+.|++++||.. .+++.++|.+.|++.|-...
T Consensus 23 e~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IH 77 (97)
T COG1888 23 ELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIH 77 (97)
T ss_pred HHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeee
Confidence 34467788888876 57899999999999997543
No 34
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=29.74 E-value=55 Score=24.92 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCccc---------------------CCCCHHHHHHHHHhcCCCeE
Q 025451 175 LEIKKRILRMEGVFF---------------------SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 175 ~~IEkaL~k~~GV~s---------------------g~~~~~~L~~aI~~aGY~a~ 209 (252)
-.+=++|.+++||.. ..++.++|.++|++.|-...
T Consensus 20 ~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IH 75 (95)
T PF02680_consen 20 VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIH 75 (95)
T ss_dssp HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEE
Confidence 345578889999877 46999999999999997543
No 35
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=29.27 E-value=39 Score=21.94 Aligned_cols=33 Identities=6% Similarity=-0.092 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCCcccCCCCHHHHHHHHHhcCCCe
Q 025451 174 SLEIKKRILRMEGVFFSFFFPQKLFRSFYFFGVVY 208 (252)
Q Consensus 174 a~~IEkaL~k~~GV~sg~~~~~~L~~aI~~aGY~a 208 (252)
..+|-++|+.-++|. .-..+.|.++++++||..
T Consensus 13 ~~TVSr~ln~~~~vs--~~tr~rI~~~a~~lgY~p 45 (46)
T PF00356_consen 13 KSTVSRVLNGPPRVS--EETRERILEAAEELGYRP 45 (46)
T ss_dssp HHHHHHHHTTCSSST--HHHHHHHHHHHHHHTB-S
T ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHHHHCCCC
Confidence 356677777776665 233578999999999964
No 36
>COG1888 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.02 E-value=2.2e+02 Score=21.57 Aligned_cols=67 Identities=21% Similarity=0.265 Sum_probs=42.2
Q ss_pred CceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecc-----ccc--ceEEeecccCChhhhhhhhhcccccccccc
Q 025451 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITD-----CKT--HKVIVKGEKADPLKVLDRVQRKSHRQVELL 127 (252)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vd-----l~~--~~v~V~~~~~d~~~i~~~I~k~~G~~a~l~ 127 (252)
..+++|.+. -+-.--.--+-..|++++||..|.+. ..+ -+++|.|..+|.+.+.+.|. ..|..+..+
T Consensus 5 iRRlVLDvlKP~~~p~ive~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE-~~Gg~IHSi 79 (97)
T COG1888 5 IRRLVLDVLKPHRGPTIVELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIE-ELGGAIHSI 79 (97)
T ss_pred ceeeeeeecCCcCCCcHHHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHH-HcCCeeeeh
Confidence 455666665 44333444566778888887766543 233 34455665468899999998 688765443
No 37
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=27.40 E-value=46 Score=25.53 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=31.7
Q ss_pred cCCChhhHHHHHHHHhcCCCccc-----------CCCCHHHHH---HHHHhcCCCeEEeeccc
Q 025451 167 HMHCEGCSLEIKKRILRMEGVFF-----------SFFFPQKLF---RSFYFFGVVYFFFFRFM 215 (252)
Q Consensus 167 GMtCasCa~~IEkaL~k~~GV~s-----------g~~~~~~L~---~aI~~aGY~a~~~~~~~ 215 (252)
-.+|-.||..|.+.|.+. ||.- +.+-..+.+ +.|..-||-+-..+.++
T Consensus 18 ~~qC~~cA~Al~~~L~~~-gI~Gk~i~l~T~~~~~~~I~sd~~~~~~sIt~NG~H~gI~V~~~ 79 (100)
T PF15643_consen 18 IFQCVECASALKQFLKQA-GIPGKIIRLYTGYHEGPFIYSDRLGPQESITTNGRHYGIEVGEI 79 (100)
T ss_pred ceehHHHHHHHHHHHHHC-CCCceEEEEEecCCCCceehhhhhcCCcceeeCCEEEEEEEeeE
Confidence 368999999999999863 4433 222334444 77888888765555444
No 38
>TIGR03406 FeS_long_SufT probable FeS assembly SUF system protein SufT. The function is unknown for this protein family, but members are found almost always in operons for the the SUF system of iron-sulfur cluster biosynthesis. The SUF system is present elsewhere on the chromosome for those few species where SUF genes are not adjacent. This family shares this property of association with the SUF system with a related family, TIGR02945. TIGR02945 consists largely of a DUF59 domain (see Pfam family pfam01883), while this protein is about double the length, with a unique N-terminal domain and DUF59 C-terminal domain. A location immediately downstream of the cysteine desulfurase gene sufS in many contexts suggests the gene symbol sufT. Note that some other homologs of this family and of TIGR02945, but no actual members of this family, are found in operons associated with phenylacetic acid (or other ring-hydroxylating) degradation pathways.
Probab=26.18 E-value=68 Score=27.01 Aligned_cols=34 Identities=15% Similarity=0.373 Sum_probs=24.2
Q ss_pred eEEEEEeccchhHH------HHHHHHhcCCCCceeeeccc
Q 025451 62 EIVLKVYMHCEGCA------RKVRRCLKGFEGVEDVITDC 95 (252)
Q Consensus 62 ~v~l~V~M~C~~Ca------~~Ie~aL~~l~GV~~v~vdl 95 (252)
++.+.+.++..+|. ..|+.+|..++||.++.|++
T Consensus 114 ~V~I~mtLt~p~c~~~~~L~~dV~~aL~~l~gV~~V~V~l 153 (174)
T TIGR03406 114 RVDIEMTLTAPGCGMGPVLVEDVEDKVLAVPNVDEVEVEL 153 (174)
T ss_pred EEEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 35555556655555 45888999999999888764
No 39
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.83 E-value=1.6e+02 Score=20.33 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=36.5
Q ss_pred cCCChhhHHHHHHHHhcCC-C-ccc----CCCCHHHHHHHHHhcCCCeEE
Q 025451 167 HMHCEGCSLEIKKRILRME-G-VFF----SFFFPQKLFRSFYFFGVVYFF 210 (252)
Q Consensus 167 GMtCasCa~~IEkaL~k~~-G-V~s----g~~~~~~L~~aI~~aGY~a~~ 210 (252)
|.+|.-=.-...++|.+++ | +.. +..+..+|....++.||....
T Consensus 6 G~~CP~P~i~~k~~l~~l~~G~~l~V~~dd~~s~~di~~~~~~~g~~~~~ 55 (69)
T cd03423 6 GLRCPEPVMMLHKKVRKMKPGDTLLVLATDPSTTRDIPKFCTFLGHELLA 55 (69)
T ss_pred CCcCCHHHHHHHHHHHcCCCCCEEEEEeCCCchHHHHHHHHHHcCCEEEE
Confidence 8999999999999999995 4 323 566788999999999998743
No 40
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=25.82 E-value=1.1e+02 Score=25.04 Aligned_cols=36 Identities=11% Similarity=0.259 Sum_probs=28.1
Q ss_pred CceEEEEEe-ccchhHHHHHHHHhcCCCCceeeecccc
Q 025451 60 PKEIVLKVY-MHCEGCARKVRRCLKGFEGVEDVITDCK 96 (252)
Q Consensus 60 ~~~v~l~V~-M~C~~Ca~~Ie~aL~~l~GV~~v~vdl~ 96 (252)
...+++.|+ -.|..|...|.....++ |+.++.|...
T Consensus 99 g~~~tm~Vdr~vC~~C~~~i~~~a~~l-Gl~~L~I~~~ 135 (146)
T PF14437_consen 99 GRSMTMYVDRDVCGYCGGDIPSMAEKL-GLKSLTIHEP 135 (146)
T ss_pred CCeEEEEECcccchHHHHHHHHHHHHc-CCCeEEEEec
Confidence 456889999 99999998888877764 7777766544
No 41
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=25.39 E-value=1.4e+02 Score=20.74 Aligned_cols=43 Identities=7% Similarity=-0.016 Sum_probs=35.9
Q ss_pred cCCChhhHHHHHHHHhcCC-C-ccc----CCCCHHHHHHHHHhcCCCeE
Q 025451 167 HMHCEGCSLEIKKRILRME-G-VFF----SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 167 GMtCasCa~~IEkaL~k~~-G-V~s----g~~~~~~L~~aI~~aGY~a~ 209 (252)
|..|.-=+-+..++|.+++ | +.. ...+..+|....+..||...
T Consensus 6 G~~CP~Pvi~~kkal~~l~~G~~l~V~~d~~~s~~ni~~~~~~~g~~v~ 54 (69)
T cd03422 6 GEPCPYPAIATLEALPSLKPGEILEVISDCPQSINNIPIDARNHGYKVL 54 (69)
T ss_pred CCcCCHHHHHHHHHHHcCCCCCEEEEEecCchHHHHHHHHHHHcCCEEE
Confidence 8999999999999999996 3 111 55677899999999999874
No 42
>PRK00299 sulfur transfer protein SirA; Reviewed
Probab=23.41 E-value=2.5e+02 Score=20.15 Aligned_cols=48 Identities=13% Similarity=0.228 Sum_probs=39.3
Q ss_pred EEEEe-cCCChhhHHHHHHHHhcCC-C-ccc----CCCCHHHHHHHHHhcCCCeE
Q 025451 162 VVLKV-HMHCEGCSLEIKKRILRME-G-VFF----SFFFPQKLFRSFYFFGVVYF 209 (252)
Q Consensus 162 ~~L~V-GMtCasCa~~IEkaL~k~~-G-V~s----g~~~~~~L~~aI~~aGY~a~ 209 (252)
.+|.. |..|..=.-...++|.+++ | +.. +..+..+|....+..||...
T Consensus 10 ~~lD~~Gl~CP~Pll~~kk~l~~l~~G~~l~V~~dd~~~~~di~~~~~~~G~~~~ 64 (81)
T PRK00299 10 HTLDALGLRCPEPVMMVRKTVRNMQPGETLLIIADDPATTRDIPSFCRFMDHELL 64 (81)
T ss_pred eEEecCCCCCCHHHHHHHHHHHcCCCCCEEEEEeCCccHHHHHHHHHHHcCCEEE
Confidence 45777 9999999999999999995 4 322 55677899999999999864
No 43
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=22.66 E-value=74 Score=23.54 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCCceeeecccc
Q 025451 76 RKVRRCLKGFEGVEDVITDCK 96 (252)
Q Consensus 76 ~~Ie~aL~~l~GV~~v~vdl~ 96 (252)
..++.+|..++|+.++.+++.
T Consensus 58 ~~i~~al~~l~gv~~v~v~i~ 78 (99)
T TIGR02945 58 GEVENAVRAVPGVGSVTVELV 78 (99)
T ss_pred HHHHHHHHhCCCCceEEEEEE
Confidence 457888999999998888764
No 44
>COG0841 AcrB Cation/multidrug efflux pump [Defense mechanisms]
Probab=22.66 E-value=3.1e+02 Score=29.60 Aligned_cols=34 Identities=15% Similarity=0.128 Sum_probs=27.2
Q ss_pred HHHHHHHHhcCCCccc----------------------CCCCHHHHHHHHHhcCCC
Q 025451 174 SLEIKKRILRMEGVFF----------------------SFFFPQKLFRSFYFFGVV 207 (252)
Q Consensus 174 a~~IEkaL~k~~GV~s----------------------g~~~~~~L~~aI~~aGY~ 207 (252)
...|...|++++||.+ -.++++++..+|+..-..
T Consensus 157 ~~~l~~~L~~v~GV~~V~~~G~~~~~~rI~ldp~kLa~~gLt~~dV~~ai~~qN~~ 212 (1009)
T COG0841 157 ASNVRDELSRVPGVGSVQLFGAQEYAMRIWLDPAKLAAYGLTPSDVQSAIRAQNVQ 212 (1009)
T ss_pred HHHHHHHHhcCCCceEEEEcCCCceeEEEEeCHHHHHHcCCCHHHHHHHHHHhCcc
Confidence 5568999999999998 236788899999876654
Done!