Query 025452
Match_columns 252
No_of_seqs 80 out of 82
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 10:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025452.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025452hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_N 50S ribosomal protein L 56.8 7.4 0.00025 31.5 3.0 78 134-212 12-101 (120)
2 2zjr_K 50S ribosomal protein L 53.3 9.1 0.00031 30.8 3.0 77 135-212 13-101 (116)
3 1gd8_A 50S ribosomal protein L 51.4 9 0.00031 30.9 2.7 77 135-212 13-101 (118)
4 3bbo_P Ribosomal protein L17; 39.7 11 0.00036 33.3 1.5 78 134-212 101-190 (205)
5 3fsp_A A/G-specific adenine gl 39.3 43 0.0015 30.2 5.5 83 71-166 14-107 (369)
6 3kw6_A 26S protease regulatory 36.1 7.1 0.00024 27.4 -0.1 44 132-178 1-44 (78)
7 3c1x_A Hepatocyte growth facto 35.8 67 0.0023 28.1 6.1 21 115-136 277-297 (373)
8 3pls_A Macrophage-stimulating 34.7 54 0.0019 26.5 5.0 22 115-137 209-230 (298)
9 2jtw_A Transmembrane helix 7 o 34.2 14 0.00048 22.9 1.0 11 204-214 7-17 (26)
10 2g3v_A CAG pathogenicity islan 31.7 50 0.0017 28.1 4.3 55 125-209 61-115 (208)
11 1hm6_A Annexin 1; phospholipid 31.5 2.4E+02 0.0083 25.5 9.2 55 171-231 243-299 (346)
12 3f66_A Hepatocyte growth facto 30.5 86 0.0029 25.5 5.5 22 115-137 213-234 (298)
13 3etn_A Putative phosphosugar i 30.5 28 0.00096 28.8 2.6 41 125-166 8-53 (220)
14 2cqm_A Ribosomal protein L17 i 29.8 14 0.00048 29.9 0.6 75 137-212 3-91 (122)
15 3n5n_X A/G-specific adenine DN 29.0 2.6E+02 0.0089 25.0 8.8 136 71-220 16-168 (287)
16 2l76_A Nfatc2-interacting prot 27.9 12 0.00041 29.2 -0.1 22 137-158 41-62 (95)
17 1b3u_A Protein (protein phosph 26.4 1.8E+02 0.0063 25.6 7.3 51 123-173 69-120 (588)
18 4aw0_A HPDK1, 3-phosphoinositi 25.9 52 0.0018 29.2 3.7 57 116-174 216-274 (311)
19 2fji_1 Exocyst complex compone 24.5 44 0.0015 30.4 3.0 92 70-164 220-332 (399)
20 3t9t_A Tyrosine-protein kinase 24.5 1.1E+02 0.0039 24.1 5.1 34 115-149 186-221 (267)
21 4e9f_A Methyl-CPG-binding doma 23.4 1.2E+02 0.004 24.8 5.1 53 122-178 49-105 (161)
22 3txo_A PKC-L, NPKC-ETA, protei 23.2 81 0.0028 27.5 4.3 61 115-177 205-267 (353)
23 4hcu_A Tyrosine-protein kinase 22.9 1.2E+02 0.0042 24.2 5.1 34 115-149 188-223 (269)
24 1v38_A SAM-domain protein sams 21.9 39 0.0013 24.3 1.7 53 95-147 14-69 (78)
25 2dl0_A SAM and SH3 domain-cont 21.9 53 0.0018 24.9 2.5 61 86-146 16-79 (97)
26 3al0_B Aspartyl/glutamyl-tRNA( 21.8 5E+02 0.017 25.1 9.9 109 107-234 361-477 (482)
27 2jpc_A SSRB; DNA binding prote 21.0 1.3E+02 0.0044 19.1 4.0 47 124-178 5-51 (61)
No 1
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=56.79 E-value=7.4 Score=31.50 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCC
Q 025452 134 PSEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKG 201 (252)
Q Consensus 134 ~peed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (252)
++.+||.+++.-++.+|= --+..+|.-|++|..+|+..+.. ....|+..+..+..++..|+.+-+ +-
T Consensus 12 r~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~-~R 90 (120)
T 3r8s_N 12 RNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SR 90 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTT-TC
T ss_pred CChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CC
Confidence 357899999999998873 34778999999999999976655 355777777778899999998886 45
Q ss_pred CCcchhhHHHH
Q 025452 202 NFSYSRFFAVG 212 (252)
Q Consensus 202 ~F~YSRlfAIG 212 (252)
+--|+|+.=+|
T Consensus 91 ~GGYTRI~K~~ 101 (120)
T 3r8s_N 91 AGGYTRILKCG 101 (120)
T ss_dssp CSCCEEEEEEE
T ss_pred CCCeEEEEECC
Confidence 55799986554
No 2
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=53.32 E-value=9.1 Score=30.77 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=60.8
Q ss_pred CchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025452 135 SEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (252)
Q Consensus 135 peed~~~IF~Alc~Alg~---------DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (252)
+.+||.+++..++.+|=. -++.+|.-|++|.-+|+..+.. ....|+..+..+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (116)
T 2zjr_K 13 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 91 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 568999999999998743 4678999999999999976543 345666666678899999998886 455
Q ss_pred CcchhhHHHH
Q 025452 203 FSYSRFFAVG 212 (252)
Q Consensus 203 F~YSRlfAIG 212 (252)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (116)
T 2zjr_K 92 GGYTRILRVG 101 (116)
T ss_dssp SCCCEEEECC
T ss_pred CCeeEEEECC
Confidence 5899987555
No 3
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=51.41 E-value=9 Score=30.87 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.7
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025452 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (252)
Q Consensus 135 peed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (252)
+.+||.+++..|+.+|= --+..+|.-|++|.-+|+..+.. ....|+..+..+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (118)
T 1gd8_A 13 HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQ 91 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 56899999999998873 34778999999999999966543 345667666678899999999886 455
Q ss_pred CcchhhHHHH
Q 025452 203 FSYSRFFAVG 212 (252)
Q Consensus 203 F~YSRlfAIG 212 (252)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (118)
T 1gd8_A 92 GGYTRVLKLA 101 (118)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5899986554
No 4
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=39.66 E-value=11 Score=33.29 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.7
Q ss_pred CCchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCC
Q 025452 134 PSEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKG 201 (252)
Q Consensus 134 ~peed~~~IF~Alc~Alg~---------DP~qyR~DA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (252)
++.+||.+++.-|+.+|=. -++++|.-||+|.-+|+..+.. ....|+..+..+..++..|+.+-+ +.
T Consensus 101 RtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~-dR 179 (205)
T 3bbo_P 101 RPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYG-ER 179 (205)
T ss_dssp SCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGS-SC
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CC
Confidence 3679999999999998743 4678999999999999976654 445677777778888999998886 45
Q ss_pred CCcchhhHHHH
Q 025452 202 NFSYSRFFAVG 212 (252)
Q Consensus 202 ~F~YSRlfAIG 212 (252)
+--|+|+.=+|
T Consensus 180 ~GGYTRIlKlg 190 (205)
T 3bbo_P 180 NGGYTRIIRTL 190 (205)
T ss_dssp CSCCEECCBCS
T ss_pred CCCeeEEEECC
Confidence 55899987655
No 5
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=39.30 E-value=43 Score=30.20 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=54.7
Q ss_pred CchhHhHHHHHhhCCCcCC-----cchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHH----
Q 025452 71 PTVAETKMNFLKLYKRPIP-----SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREA---- 141 (252)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIp-----sIYRrvv~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~---- 141 (252)
..+.+.=.++|..+.++.| .-|.-+|-++|.|+- + .--+..+|.+|++.||..++...
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt--~-----------~~~~~~~~~~l~~~~pt~~~la~a~~~ 80 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQT--R-----------VETVIPYFEQFIDRFPTLEALADADED 80 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTS--C-----------HHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccC--c-----------HHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 4588888899999999876 567778888777663 1 12366788999999986554321
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHH
Q 025452 142 IFQAYITALKED--PEQYRIDAQKLEE 166 (252)
Q Consensus 142 IF~Alc~Alg~D--P~qyR~DA~~l~~ 166 (252)
-...+++.+|+- ...+++-|+.+.+
T Consensus 81 ~l~~~i~~~G~~~ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 81 EVLKAWEGLGYYSRVRNLHAAVKEVKT 107 (369)
T ss_dssp HHHHTTTTSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 124456788883 3334445555544
No 6
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=36.12 E-value=7.1 Score=27.41 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=31.2
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025452 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (252)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (252)
+.|..++|..||..+++....+++ -|-+.|.+...|.|..||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~---~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCc---cCHHHHHHHcCCCCHHHHHH
Confidence 357889999999999998776533 23445555566788777764
No 7
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=35.81 E-value=67 Score=28.15 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=15.2
Q ss_pred cccchhhHHHHHHHHhcCCCCc
Q 025452 115 DPVFALGFVTVYDRLMEGYPSE 136 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pe 136 (252)
..||++|++ .|+-++.|.+|-
T Consensus 277 ~DvwSlG~i-l~ellt~~~~p~ 297 (373)
T 3c1x_A 277 SDVWSFGVL-LWELMTRGAPPY 297 (373)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSC
T ss_pred HHHHHHHHH-HHHHHhCcCCCC
Confidence 358999965 677777777653
No 8
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=34.74 E-value=54 Score=26.50 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.2
Q ss_pred cccchhhHHHHHHHHhcCCCCch
Q 025452 115 DPVFALGFVTVYDRLMEGYPSEE 137 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pee 137 (252)
..||+||++ .|+-++.|.||..
T Consensus 209 ~Di~slG~i-l~~l~~g~~~~~~ 230 (298)
T 3pls_A 209 SDVWSFGVL-LWELLTRGAPPYR 230 (298)
T ss_dssp HHHHHHHHH-HHHHHHTSCCTTT
T ss_pred hchhhHHHH-HHHHhhCCCCCCc
Confidence 369999964 6788887877643
No 9
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=34.25 E-value=14 Score=22.85 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.8
Q ss_pred cchhhHHHHHH
Q 025452 204 SYSRFFAVGLF 214 (252)
Q Consensus 204 ~YSRlfAIGLf 214 (252)
.|+|++|+||-
T Consensus 7 sylRlwaLsLa 17 (26)
T 2jtw_A 7 SYLRLWALSLA 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhhhh
Confidence 59999999985
No 10
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=31.68 E-value=50 Score=28.11 Aligned_cols=55 Identities=31% Similarity=0.464 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCc
Q 025452 125 VYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFS 204 (252)
Q Consensus 125 vFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~ 204 (252)
+.|.....|--+ +.|.++++|.|-- ++--.-|+. +--.+|.+||+ ||+|.
T Consensus 61 aldkvlrnymkd------yraviksigvdkf--kkvyrlles------------------etmellhaiae----npnfl 110 (208)
T 2g3v_A 61 ALDKVLRNYMKD------YRAVIKSIGVDKF--KKVYRLLES------------------ETMELLHAIAE----NPNFL 110 (208)
T ss_dssp HHHHHHHHHSSC------HHHHHHHTCHHHH--HHHHHHHHH------------------HHHHHHHHHHH----CTTSS
T ss_pred hHHHHHHHHHHH------HHHHHHHhchHHH--HHHHHHHHH------------------HHHHHHHHHHh----CCchh
Confidence 345555555322 4689999998743 222222221 11237889998 99999
Q ss_pred chhhH
Q 025452 205 YSRFF 209 (252)
Q Consensus 205 YSRlf 209 (252)
+|+|-
T Consensus 111 fskfd 115 (208)
T 2g3v_A 111 FSKFD 115 (208)
T ss_dssp CBGGG
T ss_pred HHhhh
Confidence 99874
No 11
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=31.52 E-value=2.4e+02 Score=25.52 Aligned_cols=55 Identities=18% Similarity=0.274 Sum_probs=31.8
Q ss_pred CCccccccccCC--cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHH
Q 025452 171 QTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKV 231 (252)
Q Consensus 171 ~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~a~~~dp~~L~kl 231 (252)
....+|.+-+.+ .|+.+..|-.|.+.+.. + ..+||--|+.-++-. .+|...|-.+
T Consensus 243 ~~g~~Le~~I~~e~sG~~~~~L~~lv~~~r~-~----~~~~A~~L~~A~~g~-GTde~~lirI 299 (346)
T 1hm6_A 243 YSKHDMNKVLDLELKGDIENCLTVVVKCATS-K----PMFFAEKLHQAMKGI-GTRHKTLIRI 299 (346)
T ss_dssp TCCCCTTSBCCCCCBHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHSSS-SCCHHHHHHH
T ss_pred HHCcCHHHHHHHHcCchHHHHHHHHHhhcCC-c----cHHHHHHHHHHhcCC-CCCHHHHhHH
Confidence 334444444443 67788888777654432 2 345888888888653 3455444333
No 12
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=30.54 E-value=86 Score=25.46 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=15.7
Q ss_pred cccchhhHHHHHHHHhcCCCCch
Q 025452 115 DPVFALGFVTVYDRLMEGYPSEE 137 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pee 137 (252)
..||+||++ +|+-++.|.||-.
T Consensus 213 ~Di~slG~i-l~~l~~~~~~~~~ 234 (298)
T 3f66_A 213 SDVWSFGVL-LWELMTRGAPPYP 234 (298)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSST
T ss_pred HHHHHHHHH-HHHHHhCCCCCCc
Confidence 369999975 6777776776643
No 13
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=30.52 E-value=28 Score=28.82 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=24.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q 025452 125 VYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEE 166 (252)
Q Consensus 125 vFd~fmqGY~peed~~~IF~Alc~Alg-----~DP~qyR~DA~~l~~ 166 (252)
-+|.+|+||+ ++..+.+++.+++.+. .|++++.+-++.+.+
T Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~t~~~ld~~~i~~~~~~i~~ 53 (220)
T 3etn_A 8 HHHHHENLYF-QGMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVE 53 (220)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3688999994 7889999999988765 688888888877766
No 14
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=29.78 E-value=14 Score=29.88 Aligned_cols=75 Identities=15% Similarity=0.223 Sum_probs=54.8
Q ss_pred hhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc-----ccccccCCcchhHHHHHHHHHHhcCCCC
Q 025452 137 EDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS-----SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (252)
Q Consensus 137 ed~~~IF~Alc~Alg---------~DP~qyR~DA~~l~~~A~~~s~~-----~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (252)
.||.+++.-|+.+|= --++.+|.-|++|.-+|+.-+.. ....|+..+..+..++..|+.+-+ +-+
T Consensus 3 ~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~-~R~ 81 (122)
T 2cqm_A 3 SGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYK-DQT 81 (122)
T ss_dssp CCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHH-HSC
T ss_pred HHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCC
Confidence 355666666666653 23678999999999999966644 344577777788899999998876 445
Q ss_pred CcchhhHHHH
Q 025452 203 FSYSRFFAVG 212 (252)
Q Consensus 203 F~YSRlfAIG 212 (252)
--|+|++=+|
T Consensus 82 GGYTRI~K~~ 91 (122)
T 2cqm_A 82 GGYTRMLQIP 91 (122)
T ss_dssp SCCEEEEEEC
T ss_pred CCeeEEEECC
Confidence 5799987665
No 15
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=29.03 E-value=2.6e+02 Score=24.95 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=69.7
Q ss_pred CchhHhHHHHHhhCCCcCCcchhHH----------HHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHH
Q 025452 71 PTVAETKMNFLKLYKRPIPSIYNTV----------LQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDRE 140 (252)
Q Consensus 71 ~TVSDTKr~F~~~y~rPIpsIYRrv----------v~ELLVElHLLs~n~~F~YDplFALG~VTvFd~fmqGY~peed~~ 140 (252)
..+.+.=..+|..+.|..| ||+. -=|+||..=| +-|.+ .--+..+|.+|++-||..++..
T Consensus 16 ~~~~~~ll~Wy~~~~R~lP--WR~~~~~~~d~~~dpfe~LVs~IL-sQQts-------~~~v~~~~~rL~~~fptpe~La 85 (287)
T 3n5n_X 16 TAFRGSLLSWYDQEKRDLP--WRRRAEDEMDLDRRAYAVWVSEVM-LQQTQ-------VATVINYYTGWMQKWPTLQDLA 85 (287)
T ss_dssp HHHHHHHHHHHHHHCCCCH--HHHHHHHCCSHHHHHHHHHHHHHH-HHTSC-------HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC--CcCcCccccCCCCCHHHHHHHHHH-hCCCc-------HHHHHHHHHHHHHHCCCHHHHH
Confidence 3467777889999999776 6663 1244443333 22222 1235678899999998655432
Q ss_pred ----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcCCccccccccC-CcchhHHHHHHHHHHhcCCCCCcchhhHHHHH
Q 025452 141 ----AIFQAYITALKE--DPEQYRIDAQKLEEWARGQTASSLVEFPS-KEGEVEGLLKDIAERASGKGNFSYSRFFAVGL 213 (252)
Q Consensus 141 ----~IF~Alc~Alg~--DP~qyR~DA~~l~~~A~~~s~~~l~~~~~-~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGL 213 (252)
.-...+++.+|+ -...+++-|+.+.+--.|.-.+++.+++. -.|=...+...|...+-+.+.|- .=..+
T Consensus 86 ~a~~eel~~~ir~lG~~~KA~~L~~~A~~i~~~~~g~~p~~~~~Ll~~LpGIG~kTA~~iL~~a~g~p~~~----VDt~V 161 (287)
T 3n5n_X 86 SASLEEVNQLWAGLGYYSRGRRLQEGARKVVEELGGHMPRTAETLQQLLPGVGRYTAGAIASIAFGQATGV----VDGNV 161 (287)
T ss_dssp TSCHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSTTCCCSSHHHHHHHSTTCCHHHHHHHHHHHSCCCCCC----CCHHH
T ss_pred cCCHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHcCCCCHHHHHHHHHHhcCCCCcc----ccHHH
Confidence 123456688898 33334444555444323332233333332 23322233333433334444442 23355
Q ss_pred HHHHhhc
Q 025452 214 FRLLELA 220 (252)
Q Consensus 214 f~LLE~a 220 (252)
.|++..-
T Consensus 162 ~Rv~~Rl 168 (287)
T 3n5n_X 162 ARVLCRV 168 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666433
No 16
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=27.94 E-value=12 Score=29.15 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhcCCCHHHHH
Q 025452 137 EDREAIFQAYITALKEDPEQYR 158 (252)
Q Consensus 137 ed~~~IF~Alc~Alg~DP~qyR 158 (252)
+...+||+|||+-.|.++..+|
T Consensus 41 t~l~KL~~aYc~r~gv~~~sir 62 (95)
T 2l76_A 41 EPLQSVVDHMATHLGVSPSRIL 62 (95)
T ss_dssp SCTHHHHHHHHHHHTSCGGGEE
T ss_pred ChHHHHHHHHHhhcCCChhhEE
Confidence 4468999999999999988754
No 17
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=26.40 E-value=1.8e+02 Score=25.59 Aligned_cols=51 Identities=8% Similarity=0.024 Sum_probs=29.2
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHH-HHHHHHHhcCCc
Q 025452 123 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDA-QKLEEWARGQTA 173 (252)
Q Consensus 123 VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA-~~l~~~A~~~s~ 173 (252)
...+..|.+...++++...|+..|++.++.+....|+.| +.|.+.+...+.
T Consensus 69 ~~~L~~~~~~~~~~~~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~ 120 (588)
T 1b3u_A 69 AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP 120 (588)
T ss_dssp HHHHTTCSGGGTSGGGGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH
Confidence 334444544444456677788888877654445566655 445555544443
No 18
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=25.91 E-value=52 Score=29.25 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=37.7
Q ss_pred ccchhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc
Q 025452 116 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174 (252)
Q Consensus 116 plFALG~VTvFd~fmqGY~p--eed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~ 174 (252)
.|||||++ +|+-++ |.+| .++...+++.+++.-=.-|+.+-.+++.|....-...++
T Consensus 216 DiWSlGvi-lyeml~-G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~ 274 (311)
T 4aw0_A 216 DLWALGCI-IYQLVA-GLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274 (311)
T ss_dssp HHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGG
T ss_pred HHHHHHHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHh
Confidence 49999976 566555 6666 456778888888754334556666777777655444443
No 19
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=24.55 E-value=44 Score=30.39 Aligned_cols=92 Identities=12% Similarity=0.187 Sum_probs=58.8
Q ss_pred CCchhHhHHHHHhhC-CCcCCcchhHHHHHHHHHH------hhhccccccc--ccccchhhHH---HHHHHHhcCCCCch
Q 025452 70 PPTVAETKMNFLKLY-KRPIPSIYNTVLQELIVQQ------HLMRYKRTYQ--YDPVFALGFV---TVYDRLMEGYPSEE 137 (252)
Q Consensus 70 ~~TVSDTKr~F~~~y-~rPIpsIYRrvv~ELLVEl------HLLs~n~~F~--YDplFALG~V---TvFd~fmqGY~pee 137 (252)
..|+-+|-..|+..| ++--|+.|..+++|++-+. .|+. ...|+ . ..++..+. ..+..|..+|.+..
T Consensus 220 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~-~~~~~~l~~D~~~l~~~f~~~~~~~ 297 (399)
T 2fji_1 220 AQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKN-NKFLEAMKRDFEIFYQLFVKVLDGN 297 (399)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGG-GHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchh-HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467888999999999 8888889998888776653 4554 45554 2 46666653 34555555666544
Q ss_pred h--------HHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 025452 138 D--------REAIFQAYITALKEDP-EQYRIDAQKL 164 (252)
Q Consensus 138 d--------~~~IF~Alc~Alg~DP-~qyR~DA~~l 164 (252)
+ +-...+.|.. ++.|| +.+-..-..+
T Consensus 298 ~~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l 332 (399)
T 2fji_1 298 ESKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKY 332 (399)
T ss_dssp TTHHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHH
Confidence 2 3345666666 66666 5555444444
No 20
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=24.51 E-value=1.1e+02 Score=24.09 Aligned_cols=34 Identities=18% Similarity=0.347 Sum_probs=21.7
Q ss_pred cccchhhHHHHHHHHhcCCCCch--hHHHHHHHHHHh
Q 025452 115 DPVFALGFVTVYDRLMEGYPSEE--DREAIFQAYITA 149 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~pee--d~~~IF~Alc~A 149 (252)
..+|+||+ ..|+-++.|.+|-. +...+.+.+.+.
T Consensus 186 ~Di~slG~-il~~l~~~g~~p~~~~~~~~~~~~i~~~ 221 (267)
T 3t9t_A 186 SDVWSFGV-LMWEVFSEGKIPYENRSNSEVVEDISTG 221 (267)
T ss_dssp HHHHHHHH-HHHHHHTTSCCTTTTCCHHHHHHHHHTT
T ss_pred hchhhhHH-HHHHHhccCCCCCCCCCHHHHHHHHhcC
Confidence 56999996 46777776777643 234455555444
No 21
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=23.43 E-value=1.2e+02 Score=24.85 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=37.3
Q ss_pred HHHHHHHHhcCCCCchhHH----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025452 122 FVTVYDRLMEGYPSEEDRE----AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (252)
Q Consensus 122 ~VTvFd~fmqGY~peed~~----~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (252)
+..+|.+|++-||..++.. .=...+++.+|+ ||+-|+.|.+.++|.=.++..+
T Consensus 49 v~~~~~~l~~~~pt~~~la~a~~~el~~~i~~lG~----y~~KAk~i~~~a~~~vp~~~~~ 105 (161)
T 4e9f_A 49 AIPVLWKFLEKYPSAEVARTADWRDVSELLKPLGL----YDLRAKTIVKFSDEYLTKQWKY 105 (161)
T ss_dssp HHHHHHHHHHHSCSHHHHTTSCHHHHHHHHGGGSC----HHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHhccChHhHHhHhhhcCC----HHHHHHHHHHHhCCcCCCChhh
Confidence 5568999999998655432 234567888887 6778999999888754444433
No 22
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=23.16 E-value=81 Score=27.46 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=42.1
Q ss_pred cccchhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccc
Q 025452 115 DPVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~p--eed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~ 177 (252)
..+|+||++ +|+-++ |.+| .++...+++.+++..-.-|..+..++..+....-...+++-.
T Consensus 205 ~DiwslG~i-l~ell~-G~~Pf~~~~~~~~~~~i~~~~~~~p~~~~~~~~~li~~lL~~dP~~R~ 267 (353)
T 3txo_A 205 VDWWAMGVL-LYEMLC-GHAPFEAENEDDLFEAILNDEVVYPTWLHEDATGILKSFMTKNPTMRL 267 (353)
T ss_dssp HHHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHTCSSGGGST
T ss_pred cCCCcchHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHhhhCHHHcc
Confidence 358999975 466665 7666 345677888888876666766777788887766655555443
No 23
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=22.92 E-value=1.2e+02 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.393 Sum_probs=21.0
Q ss_pred cccchhhHHHHHHHHhcCCCCchh--HHHHHHHHHHh
Q 025452 115 DPVFALGFVTVYDRLMEGYPSEED--REAIFQAYITA 149 (252)
Q Consensus 115 DplFALG~VTvFd~fmqGY~peed--~~~IF~Alc~A 149 (252)
..+|+||++ .|+-++.|.+|-+. ...+.+.+...
T Consensus 188 ~Di~slG~~-l~~ll~~g~~p~~~~~~~~~~~~~~~~ 223 (269)
T 4hcu_A 188 SDVWSFGVL-MWEVFSEGKIPYENRSNSEVVEDISTG 223 (269)
T ss_dssp HHHHHHHHH-HHHHHTTSCCTTTTCCHHHHHHHHHTT
T ss_pred hhhHHHHHH-HHHHhcCCCCCCCCCCHHHHHHHHhcC
Confidence 469999976 67777767776432 33444444443
No 24
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=21.92 E-value=39 Score=24.33 Aligned_cols=53 Identities=21% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhccccccccccc---chhhHHHHHHHHhcCCCCchhHHHHHHHHH
Q 025452 95 VLQELIVQQHLMRYKRTYQYDPV---FALGFVTVYDRLMEGYPSEEDREAIFQAYI 147 (252)
Q Consensus 95 vv~ELLVElHLLs~n~~F~YDpl---FALG~VTvFd~fmqGY~peed~~~IF~Alc 147 (252)
-|.|.|..++|-.|-..|.-+.+ =.+.-.|-=|---=|-.+.+||.+|..|+-
T Consensus 14 ~V~eWL~~i~L~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~~ghrkkil~ai~ 69 (78)
T 1v38_A 14 TIQEFLERIHLQEYTSTLLLNGYETLDDLKDIKESHLIELNIADPEDRARLLSAAE 69 (78)
T ss_dssp BHHHHHHTTTCGGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCCHHHHHHHHHHHH
Confidence 46779999999999999954443 333334444555567777788888877653
No 25
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.91 E-value=53 Score=24.87 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=41.5
Q ss_pred CcCCcchhHHHHHHHHHHhhhcccccccc---cccchhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 025452 86 RPIPSIYNTVLQELIVQQHLMRYKRTYQY---DPVFALGFVTVYDRLMEGYPSEEDREAIFQAY 146 (252)
Q Consensus 86 rPIpsIYRrvv~ELLVElHLLs~n~~F~Y---DplFALG~VTvFd~fmqGY~peed~~~IF~Al 146 (252)
+|+++-.-.-|.|.|..++|-.|-..|.- |.+=.|--.|-=|---=|-...+||.+|..|+
T Consensus 16 ~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai 79 (97)
T 2dl0_A 16 KPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAA 79 (97)
T ss_dssp CCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHH
Confidence 45555444557889999999999999954 44322333455555555777778888888776
No 26
>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=21.82 E-value=5e+02 Score=25.09 Aligned_cols=109 Identities=13% Similarity=0.155 Sum_probs=68.5
Q ss_pred cccccccccccchhhHHHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchh
Q 025452 107 RYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV 186 (252)
Q Consensus 107 s~n~~F~YDplFALG~VTvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~~~~~~g~~ 186 (252)
..+.+..-.||-+=-|..+++.+-+|-=...--..+|..++.. |.||+++=+.- | . .-++.++++
T Consensus 361 ~~~~~i~~~~i~p~~la~li~li~~g~Is~~~ak~vl~~~~~~-~~~p~~IIe~~--------g--l----~qiSDe~el 425 (482)
T 3al0_B 361 ERNIEITESKLTPQHFADLFKLMDEGKISIKIAKEIFPEVFET-GKMPSQIVEEK--------G--L----TQINDEKLI 425 (482)
T ss_dssp TTTCCTTSSSCCHHHHHHHHHHHTTTSSCTTHHHHSHHHHHHH-CCCHHHHHHHH--------T--C----CCCCCSSCH
T ss_pred HcCCCHhhcCCCHHHHHHHHHHHHcCCccHHHHHHHHHHHHhc-CCCHHHHHHHh--------C--C----ccCCcHHHH
Confidence 4456666779999999999999999998888888999999986 88887653321 1 1 113445566
Q ss_pred HHHHH-HHHHHhcCCCC----Cc--chhhHHHHHHHHHhhcC-CCCHHHHHHHHHh
Q 025452 187 EGLLK-DIAERASGKGN----FS--YSRFFAVGLFRLLELAN-ATEPTVLEKVRST 234 (252)
Q Consensus 187 ~~~l~-~Ia~~~~~n~~----F~--YSRlfAIGLf~LLE~a~-~~dp~~L~kl~~~ 234 (252)
+++.+ .|++ |++ |+ =.+.|+-=+=.+|...+ --||...+++..+
T Consensus 426 ~~iV~evIa~----np~~v~~~k~Gk~k~~G~lmGqVMk~tkGkADp~~V~~llke 477 (482)
T 3al0_B 426 EELVKKAMEQ----NPKAVQDYKSGKKKAAGFFVGYVMRETKGKANPELTNRIIQK 477 (482)
T ss_dssp HHHHHHHHHT----CHHHHHHHTTCCTTSTHHHHHHHHHTTSSCSCHHHHHHHHHH
T ss_pred HHHHHHHHHh----ChHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 66663 3332 221 10 01222211124665554 4699888888764
No 27
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.99 E-value=1.3e+02 Score=19.15 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=32.7
Q ss_pred HHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 025452 124 TVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (252)
Q Consensus 124 TvFd~fmqGY~peed~~~IF~Alc~Alg~DP~qyR~DA~~l~~~A~~~s~~~l~~ 178 (252)
.++..+.+|+...| +...+|..+..++.--..+.+..+-.+..+++.
T Consensus 5 ~vl~l~~~g~s~~e--------IA~~l~is~~tV~~~~~~~~~kl~~~~~~~l~~ 51 (61)
T 2jpc_A 5 QVLKLIDEGYTNHG--------ISEKLHISIKTVETHRMNMMRKLQVHKVTELLN 51 (61)
T ss_dssp HHHHHHHTSCCSHH--------HHHHTCSCHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHcCCCHHH--------HHHHhCCCHHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 35566788887644 567788888888888777777666666554443
Done!