BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025454
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EVI|A Chain A, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
pdb|3EVI|B Chain B, Crystal Structure Of The Thioredoxin-Fold Domain Of Human
Phosducin- Like Protein 2
Length = 118
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/96 (45%), Positives = 61/96 (63%)
Query: 98 RFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKI 157
+FG + ISG+ +V EV+ A DVWV++ LY+ C L+ Q L LARK+P TKFVK
Sbjct: 1 KFGELREISGNQYVNEVTNAEEDVWVIIHLYRSSIPMCLLVNQHLSLLARKFPETKFVKA 60
Query: 158 ISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 193
I CI +Y D LPT+ VY NG ++A ++G+ G
Sbjct: 61 IVNSCIQHYHDNCLPTIFVYKNGQIEAKFIGIIECG 96
>pdb|2DBC|A Chain A, Solution Structure Of The Thioredoxin-Like Domain Of
Phosducin-Like Protein 2(Pdcl2)
Length = 135
Score = 94.0 bits (232), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 71/126 (56%), Gaps = 1/126 (0%)
Query: 98 RFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKI 157
+FG + ISG+ +V EV+ A D+WVV+ LY+ C ++ Q L LARK+P TKFVK
Sbjct: 8 KFGELREISGNQYVNEVTNAEKDLWVVIHLYRSSVPMCLVVNQHLSVLARKFPETKFVKA 67
Query: 158 ISTDCIPNYPDRNLPTVLVYNNGAVKANYVG-LRSFGRRCTPEGVALVLCQSDPVLNDGQ 216
I CI +Y D LPT+ VY NG ++ ++G + G E + L + + +D +
Sbjct: 68 IVNSCIEHYHDNCLPTIFVYKNGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQSDLE 127
Query: 217 SGSDPS 222
S PS
Sbjct: 128 ENSGPS 133
>pdb|1B9Y|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 246
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 82 YRKKRLAEMREATKIS-RFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLM 139
YR++ + +M + R+G V + +G F+ + + +VV +Y+DG C L
Sbjct: 93 YRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALN 152
Query: 140 QCLEELARKYPATKFVKI--ISTDCIPNYPDRNLPTVLVYNNGAVKANYVGL 189
LE LA +YP KF KI +T + LPT+LVY G + +N++ +
Sbjct: 153 SSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISV 204
>pdb|1B9X|C Chain C, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
Length = 246
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 82 YRKKRLAEMREATKIS-RFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLM 139
YR++ + +M + R+G V + +G F+ + + +VV +Y+DG C L
Sbjct: 93 YRRQCMQDMHQKLSFGPRYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALN 152
Query: 140 QCLEELARKYPATKFVKI--ISTDCIPNYPDRNLPTVLVYNNGAVKANYVGL 189
LE LA +YP KF KI +T + LPT+LVY G + +N++ +
Sbjct: 153 SSLECLAAEYPMVKFCKIRASNTGAGDRFSSDVLPTLLVYKGGELISNFISV 204
>pdb|1A0R|P Chain P, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 245
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 57/112 (50%), Gaps = 4/112 (3%)
Query: 82 YRKKRLAEMREATKIS-RFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLM 139
YR++ + +M + R+G V + SG F+ + + +VV +Y+DG C L
Sbjct: 93 YRRQCMQDMHQKLSFGPRYGFVYELESGEQFLETIEKEQKITTIVVHIYEDGIKGCDALN 152
Query: 140 QCLEELARKYPATKFVKIISTDCIPN--YPDRNLPTVLVYNNGAVKANYVGL 189
L LA +YP KF KI +++ + LPT+LVY G + +N++ +
Sbjct: 153 SSLICLAAEYPMVKFCKIKASNTGAGDRFSSDVLPTLLVYKGGELLSNFISV 204
>pdb|2TRC|P Chain P, PhosducinTRANSDUCIN BETA-Gamma Complex
Length = 217
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 98 RFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVK 156
R+G V + +G F+ + + +VV +Y+DG C L LE LA +YP KF K
Sbjct: 97 RYGFVYELETGEQFLETIEKEQKVTTIVVNIYEDGVRGCDALNSSLECLAAEYPXVKFCK 156
Query: 157 I--ISTDCIPNYPDRNLPTVLVYNNGAVKANYVGL 189
I +T + LPT+LVY G + +N++ +
Sbjct: 157 IRASNTGAGDRFSSDVLPTLLVYKGGELISNFISV 191
>pdb|1KEB|A Chain A, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
pdb|1KEB|B Chain B, Crystal Structure Of Double Mutant M37l,P40s E.Coli
Thioredoxin
Length = 108
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C L+ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKLIASILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H73|A Chain A, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
pdb|2H73|B Chain B, Crystal Structure Of Thioredoxin Mutant D43e In Hexagonal
(P61) Space Group
Length = 108
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ LEE+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1M7T|A Chain A, Solution Structure And Dynamics Of The Human-Escherichia
Coli Thioredoxin Chimera: Insights Into Thermodynamic
Stability
Length = 107
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 112 REVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKII---STDCIPNYPD 168
+E A D VVV C ++ L+ KY F+++ + D P Y
Sbjct: 12 QEALDAAGDKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVIFLEVDVDDAQDVAPKYGI 71
Query: 169 RNLPTVLVYNNGAVKANYVGLRSFGR 194
R +PT+L++ NG V A VG S G+
Sbjct: 72 RGIPTLLLFKNGEVAATKVGALSKGQ 97
>pdb|2FD3|A Chain A, Crystal Structure Of Thioredoxin Mutant P34h
pdb|2FD3|B Chain B, Crystal Structure Of Thioredoxin Mutant P34h
Length = 108
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGHCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1SRX|A Chain A, Three-Dimensional Structure Of Escherichia Coli
Thioredoxin-S2 To 2.8 Angstroms Resolution
Length = 108
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYN 178
++V + + C ++ L+E+A +Y V ++ D P Y +R +PT+L++
Sbjct: 23 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYIERGIPTLLLFK 82
Query: 179 NGAVKANYVGLRSFGR 194
NG V A VG S G+
Sbjct: 83 NGEVAATKVGALSKGQ 98
>pdb|2H71|A Chain A, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
pdb|2H71|B Chain B, Crystal Structure Of Thioredoxin Mutant D47e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIAEEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2FCH|A Chain A, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|B Chain B, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|C Chain C, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|D Chain D, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|E Chain E, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|F Chain F, Crystal Structure Of Thioredoxin Mutant G74s
pdb|2FCH|G Chain G, Crystal Structure Of Thioredoxin Mutant G74s
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R++PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRSIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1ZZY|A Chain A, Crystal Structure Of Thioredoxin Mutant L7v
pdb|1ZZY|B Chain B, Crystal Structure Of Thioredoxin Mutant L7v
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHVTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H75|A Chain A, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
pdb|2H75|B Chain B, Crystal Structure Of Thioredoxin Mutant D13e In Hexagonal
(P61) Space Group
Length = 108
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFETDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|3DXB|A Chain A, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|B Chain B, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|C Chain C, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|D Chain D, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|E Chain E, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|F Chain F, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|G Chain G, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
pdb|3DXB|H Chain H, Structure Of The Uhm Domain Of Puf60 Fused To Thioredoxin
Length = 222
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 14 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 71
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 72 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 108
>pdb|2YJ7|A Chain A, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
pdb|2YJ7|B Chain B, Crystal Structure Of A Hyperstable Protein From The
Precambrian Period
Length = 106
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST 160
SV+ ++ +F +EV ++ D V+V + C ++ +EELA++Y V ++
Sbjct: 2 SVIEVTDENFEQEVLKS--DKPVLVDFWAPWCGPCRMIAPIIEELAKEYEGKVKVVKVNV 59
Query: 161 DCIPN----YPDRNLPTVLVYNNGAVKANYVG 188
D PN Y R++PT+L++ NG V VG
Sbjct: 60 DENPNTAAQYGIRSIPTLLLFKNGQVVDRLVG 91
>pdb|2TRX|A Chain A, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|2TRX|B Chain B, Crystal Structure Of Thioredoxin From Escherichia Coli At
1.68 Angstroms Resolution
pdb|1T7P|B Chain B, T7 Dna Polymerase Complexed To Dna PrimerTEMPLATE,A
Nucleoside Triphosphate, And Its Processivity Factor
Thioredoxin
pdb|1SKR|B Chain B, T7 Dna Polymerase Complexed To Dna Primer/template And
Ddatp
pdb|1SKS|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template
pdb|1SKW|B Chain B, Binary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template
pdb|1SL0|B Chain B, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL0|D Chain D, Ternary 3' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A DISORDERED CIS-Syn Thymine
Dimer On The Template And An Incoming Nucleotide
pdb|1SL1|B Chain B, Binary 5' Complex Of T7 Dna Polymerase With A Dna
Primer/template Containing A Cis-syn Thymine Dimer On
The Template
pdb|1SL2|B Chain B, Ternary 5' Complex Of T7 Dna Polymerase With A Dna
PrimerTEMPLATE CONTAINING A CIS-Syn Thymine Dimer On The
Template And An Incoming Nucleotide
pdb|1TK0|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Ddctp At The Insertion Site
pdb|1TK5|B Chain B, T7 Dna Polymerase Binary Complex With 8 Oxo Guanosine In
The Templating Strand
pdb|1TK8|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Damp At The Elongation Site
pdb|1TKD|B Chain B, T7 Dna Polymerase Ternary Complex With 8 Oxo Guanosine And
Dcmp At The Elongation Site
pdb|1T8E|B Chain B, T7 Dna Polymerase Ternary Complex With Dctp At The
Insertion Site.
pdb|1X9M|B Chain B, T7 Dna Polymerase In Complex With An N-2-
Acetylaminofluorene-adducted Dna
pdb|1X9S|B Chain B, T7 Dna Polymerase In Complex With A PrimerTEMPLATE DNA
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-Ctp As The Incoming
Nucleotide.
pdb|1X9W|B Chain B, T7 Dna Polymerase In Complex With A Primer/template Dna
Containing A Disordered N-2 Aminofluorene On The
Template, Crystallized With Dideoxy-atp As The Incoming
Nucleotide.
pdb|2BTO|T Chain T, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|1ZYQ|B Chain B, T7 Dna Polymerase In Complex With 8og And Incoming Ddatp
pdb|2AJQ|B Chain B, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2AJQ|I Chain I, Structure Of Replicative Dna Polymerase Provides Insigts
Into The Mechanisms For Processivity, Frameshifting And
Editing
pdb|2H6X|A Chain A, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
pdb|2H6X|B Chain B, Crystal Structure Of Thioredoxin Wild Type In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H76|A Chain A, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
pdb|2H76|B Chain B, Crystal Structure Of Thioredoxin Mutant D10e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDESFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H74|A Chain A, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
pdb|2H74|B Chain B, Crystal Structure Of Thioredoxin Mutant D2e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2TIR|A Chain A, Crystal Structure Analysis Of A Mutant Escherichia Coli
Thioredoxin In Which Lysine 36 Is Replaced By Glutamic
Acid
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCEMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1XOB|A Chain A, Thioredoxin (Reduced Dithio Form), Nmr, 20 Structures
pdb|1XOA|A Chain A, Thioredoxin (Oxidized Disulfide Form), Nmr, 20 Structures
Length = 108
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H72|A Chain A, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
pdb|2H72|B Chain B, Crystal Structure Of Thioredoxin Mutant E85d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGDVAATKVGALSKGQ 98
>pdb|2H70|A Chain A, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
pdb|2H70|B Chain B, Crystal Structure Of Thioredoxin Mutant D9e In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTEDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2EIO|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIO|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2H6Y|A Chain A, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
pdb|2H6Y|B Chain B, Crystal Structure Of Thioredoxin Mutant E48d In Hexagonal
(P61) Space Group
Length = 108
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2EIR|A Chain A, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|B Chain B, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|C Chain C, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIR|D Chain D, Design Of Disulfide-Linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1TXX|A Chain A, Active-Site Variant Of E.Coli Thioredoxin
Length = 108
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCVWCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|1OAZ|A Chain A, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
pdb|1OAZ|B Chain B, Ige Fv Spe7 Complexed With A Recombinant Thioredoxin
Length = 123
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 135 CGLLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYNNGAVKANYVGLR 190
C ++ L+E+A +Y V ++ D P Y R +PT+L++ NG V A VG
Sbjct: 50 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 109
Query: 191 SFGR 194
S G+
Sbjct: 110 SKGQ 113
>pdb|3DYR|A Chain A, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
pdb|3DYR|B Chain B, Crystal Structure Of E. Coli Thioredoxin Mutant I76t In
Its Oxidized Form
Length = 111
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 5 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 62
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R PT+L++ NG V A VG S G+
Sbjct: 63 QNPGTAPKYGIRGTPTLLLFKNGEVAATKVGALSKGQ 99
>pdb|1FB0|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB0|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Reduced Form)
pdb|1FB6|A Chain A, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
pdb|1FB6|B Chain B, Crystal Structure Of Thioredoxin M From Spinach
Chloroplast (Oxidized Form)
Length = 105
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIP- 164
S +FV E S+ P V+V + C L+ ++ELA++Y V ++TD P
Sbjct: 9 SWKEFVLE-SEVP----VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 63
Query: 165 ---NYPDRNLPTVLVYNNGAVKANYVG 188
Y R++PTVL + NG K + +G
Sbjct: 64 IATQYNIRSIPTVLFFKNGERKESIIG 90
>pdb|1GL8|A Chain A, Solution Structure Of Thioredoxin M From Spinach, Oxidized
Form
Length = 104
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 9/87 (10%)
Query: 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIP- 164
S +FV E S+ P V+V + C L+ ++ELA++Y V ++TD P
Sbjct: 8 SWKEFVLE-SEVP----VMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPG 62
Query: 165 ---NYPDRNLPTVLVYNNGAVKANYVG 188
Y R++PTVL + NG K + +G
Sbjct: 63 IATQYNIRSIPTVLFFKNGERKESIIG 89
>pdb|2EIQ|A Chain A, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
pdb|2EIQ|B Chain B, Design Of Disulfide-linked Thioredoxin Dimers And
Multimers Through Analysis Of Crystal Contacts
Length = 108
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAACKVGALSKGQ 98
>pdb|1THO|A Chain A, Crystal Structure Of A Mutant Escherichia Coli Thioredoxin
With An Arginine Insertion In The Active Site
Length = 109
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 135 CGLLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYNNGAVKANYVGLR 190
C ++ L+E+A +Y V ++ D P Y R +PT+L++ NG V A VG
Sbjct: 36 CKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGAL 95
Query: 191 SFGR 194
S G+
Sbjct: 96 SKGQ 99
>pdb|2H6Z|A Chain A, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
pdb|2H6Z|B Chain B, Crystal Structure Of Thioredoxin Mutant E44d In Hexagonal
(P61) Space Group
Length = 108
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + C ++ L+++A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCGPCKMIAPILDDIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|3HHV|A Chain A, The Crystal Structure Of The Thioredoxin A2 From
Sulfolobus Solfataricus
Length = 110
Score = 37.7 bits (86), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKII---STDCIPNYPDRNLPTVLVYNN 179
VVV + + A C +L +EELA YP F K+ S D Y +LPT++ + N
Sbjct: 26 VVVDFWAEWCAPCLILAPVIEELANDYPQVAFGKLNTEESQDIAMRYGIMSLPTIMFFKN 85
Query: 180 GAVKANYVG 188
G + +G
Sbjct: 86 GELVDQILG 94
>pdb|1F6M|C Chain C, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|D Chain D, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|G Chain G, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
pdb|1F6M|H Chain H, Crystal Structure Of A Complex Between Thioredoxin
Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+
Length = 108
Score = 36.2 bits (82), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 130 DGFAE-CG---LLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYNNGA 181
D +AE CG ++ L+E+A +Y V ++ D P Y R +PT+L++ NG
Sbjct: 26 DFWAEWCGPSKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 85
Query: 182 VKANYVGLRSFGR 194
V A VG S G+
Sbjct: 86 VAATKVGALSKGQ 98
>pdb|2O8V|B Chain B, Paps Reductase In A Covalent Complex With Thioredoxin C35a
Length = 128
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 8/73 (10%)
Query: 130 DGFAE-CG---LLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYNNGA 181
D +AE CG ++ L+E+A +Y V ++ D P Y R +PT+L++ NG
Sbjct: 46 DFWAEWCGPAKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGE 105
Query: 182 VKANYVGLRSFGR 194
V A VG S G+
Sbjct: 106 VAATKVGALSKGQ 118
>pdb|1ZCP|A Chain A, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|B Chain B, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|C Chain C, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
pdb|1ZCP|D Chain D, Crystal Structure Of A Catalytic Site Mutant E. Coli Trxa
(Caca)
Length = 108
Score = 35.8 bits (81), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 48/97 (49%), Gaps = 6/97 (6%)
Query: 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD 161
++ ++ F +V +A D ++V + + A ++ L+E+A +Y V ++ D
Sbjct: 4 IIHLTDDSFDTDVLKA--DGAILVDFWAEWCACAKMIAPILDEIADEYQGKLTVAKLNID 61
Query: 162 ----CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194
P Y R +PT+L++ NG V A VG S G+
Sbjct: 62 QNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQ 98
>pdb|2I9H|A Chain A, Nmr Solution Structure Of The Reduced Form Of Thioredoxin
1 From Yeast (Trx1)
Length = 103
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN 165
+ S+F ++Q D VVV Y C ++ +E+ + +YP F K + D + +
Sbjct: 7 TASEFDSAIAQ---DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYK-LDVDELGD 62
Query: 166 YPDRN----LPTVLVYNNGAVKANYVG 188
+N +PT+L++ NG A VG
Sbjct: 63 VAQKNEVSAMPTLLLFKNGKEVAKVVG 89
>pdb|3F3Q|A Chain A, Crystal Structure Of The Oxidised Form Of Thioredoxin 1
From Saccharomyces Cerevisiae
Length = 109
Score = 35.4 bits (80), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN 165
+ S+F ++Q D VVV Y C ++ +E+ + +YP F K + D + +
Sbjct: 13 TASEFDSAIAQ---DKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYK-LDVDELGD 68
Query: 166 YPDRN----LPTVLVYNNGAVKANYVG 188
+N +PT+L++ NG A VG
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|1V98|A Chain A, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
pdb|1V98|B Chain B, Crystal Structure Analysis Of Thioredoxin From Thermus
Thermophilus
Length = 140
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 110 FVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN---- 165
F +EV+ AP +V + C L+ LEELAR + V ++ D P
Sbjct: 43 FAQEVAGAP---LTLVDFFAPWCGPCRLVSPILEELARDHAGRLKVVKVNVDEHPGLAAR 99
Query: 166 YPDRNLPTVLVYNNGAVKANYVG 188
Y R++PT++++ GA A +VG
Sbjct: 100 YGVRSVPTLVLFRRGAPVATWVG 122
>pdb|2PUK|C Chain C, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
pdb|2PUK|G Chain G, Crystal Srtucture Of The Binary Complex Between
Ferredoxin: Thioredoxin Reductase And Thioredoxin M
Length = 106
Score = 34.7 bits (78), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 135 CG---LLMQCLEELARKYPATKFVKIISTDCIP----NYPDRNLPTVLVYNNGAVKANYV 187
CG L+ ++ELA++Y V ++TD P Y R++PTVL + NG K + +
Sbjct: 30 CGPSKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESII 89
Query: 188 G 188
G
Sbjct: 90 G 90
>pdb|2E0Q|A Chain A, Crystal Structure Of K53e Thioredoxin From Sulfolobus
Tokodaii Strain7
Length = 104
Score = 33.9 bits (76), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---DCIPNYPDRNLPTVLVYNNG 180
VV + + A C +L +EELA YP F K+ S D Y +LPTV+ + +G
Sbjct: 20 VVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDG 79
>pdb|3F3R|A Chain A, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
pdb|3F3R|B Chain B, Crystal Structure Of Yeast Thioredoxin1-Glutathione Mixed
Disulfide Complex
Length = 109
Score = 32.0 bits (71), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN 165
+ S+F ++Q D VVV Y ++ +E+ + +YP F K + D + +
Sbjct: 13 TASEFDSAIAQ---DKLVVVDFYATWCGPSKMIAPMIEKFSEQYPQADFYK-LDVDELGD 68
Query: 166 YPDRN----LPTVLVYNNGAVKANYVG 188
+N +PT+L++ NG A VG
Sbjct: 69 VAQKNEVSAMPTLLLFKNGKEVAKVVG 95
>pdb|2DIY|A Chain A, The Solution Structure Of The Thioredoxin Domain Of Human
Thioredoxin-Like Protein 2
Length = 130
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Query: 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN----YPDRNLPTVLVYN 178
+VV + +C + + + ELA++ P FVK + + +P Y ++PT L +
Sbjct: 41 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVK-LEAEGVPEVSEKYEISSVPTFLFFK 99
Query: 179 N 179
N
Sbjct: 100 N 100
>pdb|2CVK|A Chain A, Crystal Structure Of Thermus Thermophilus Thioredoxin
Length = 110
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIP 164
++ +F + Q P V+V + + A C + LEE+A++Y V + D P
Sbjct: 7 VTDQNFDETLGQHP---LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 63
Query: 165 NYPDR----NLPTVLVYNNG 180
R ++PTV+++ +G
Sbjct: 64 KTAXRYRVXSIPTVILFKDG 83
>pdb|2YZU|A Chain A, Crystal Structure Of Oxidized Thioredoxin From Thermus
Thermophilus Hb8
Length = 109
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
Query: 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIP 164
++ +F + Q P V+V + + A C + LEE+A++Y V + D P
Sbjct: 6 VTDQNFDETLGQHP---LVLVDFWAEWCAPCRXIAPILEEIAKEYEGKLLVAKLDVDENP 62
Query: 165 NYPDR----NLPTVLVYNNG 180
R ++PTV+++ +G
Sbjct: 63 KTAXRYRVXSIPTVILFKDG 82
>pdb|2WZ9|A Chain A, Crystal Structure Of The Thioredoxin Domain Of Human Txnl2
Length = 153
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPN----YPDRNLPTVLVYN 178
+VV + +C + + + ELA++ P FVK + + +P Y ++PT L +
Sbjct: 35 LVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVK-LEAEGVPEVSEKYEISSVPTFLFFK 93
Query: 179 NG 180
N
Sbjct: 94 NS 95
>pdb|2VLT|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLT|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In The
Oxidized State
pdb|2VLU|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLU|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|A Chain A, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
pdb|2VLV|B Chain B, Crystal Structure Of Barley Thioredoxin H Isoform 2 In
Partially Radiation-Reduced State
Length = 122
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Query: 135 CGLLMQCLEELARKYPATKFVKIISTDCIP---NYPDRNLPTVLVYNNGAVKANYVG 188
C ++ +LA+K+P F+K+ + P + +PT L G VK VG
Sbjct: 49 CRIMAPVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVG 105
>pdb|1JAT|B Chain B, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 138
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 158 ISTDCIPNYPDR----------NLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVL 205
+S DC PNYPD NLP V G V+ ++ LR + R T E + L L
Sbjct: 61 LSIDCGPNYPDSPPKVTFISKINLPCVNP-TTGEVQTDFHTLRDWKRAYTMETLLLDL 117
>pdb|2GMI|B Chain B, Mms2UBC13~UBIQUITIN
Length = 137
Score = 28.9 bits (63), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 158 ISTDCIPNYPDR----------NLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVL 205
+S DC PNYPD NLP V G V+ ++ LR + R T E + L L
Sbjct: 60 LSIDCGPNYPDSPPKVTFISKINLPCVNP-TTGEVQTDFHTLRDWKRAYTMETLLLDL 116
>pdb|3ZZX|A Chain A, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
pdb|3ZZX|B Chain B, Crystallographic Structure Of Thioredoxin From Litopenaeus
Vannamei
Length = 105
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 109 DFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPD 168
DF +++++A + VV+ Y C ++ LEEL++ F+K+ +C D
Sbjct: 10 DFTKQLNEAGNKL-VVIDFYATWCGPCKMIAPKLEELSQSMSDVVFLKVDVDECEDIAQD 68
Query: 169 RN---LPTVLVYNNG 180
+PT L NG
Sbjct: 69 NQIACMPTFLFMKNG 83
>pdb|3QCP|A Chain A, Qsox From Trypanosoma Brucei
Length = 470
Score = 28.5 bits (62), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAEC 135
SV+ +SG DF R AP W +V+ Y DG C
Sbjct: 24 SVVDLSGDDFSRVHRVAPLCPW-IVLFYNDGCGAC 57
>pdb|4A17|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 2.
pdb|4A1A|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 3.
pdb|4A1C|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 4.
pdb|4A1E|V Chain V, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 5s Rrna, 5.8s
Rrna And Proteins Of Molecule 1
Length = 239
Score = 28.5 bits (62), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 44/108 (40%), Gaps = 16/108 (14%)
Query: 84 KKRLAEMREATKISRF--GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQ- 140
KK + E R+A K F + ++ + +R V+Q PDV V+ L++ G +
Sbjct: 57 KKIVDEKRKARKTGAFYVPAEAKVAFAIRIRGVNQLHPDVKRVLRLFRLRQLHNGAFFRV 116
Query: 141 ---CLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKAN 185
L + R P F YP RN + L+Y G K N
Sbjct: 117 NKASLNMIKRVLPFITF----------GYPTRNTISKLIYKRGFAKVN 154
>pdb|1UVZ|A Chain A, Structure Of Human Thioredoxin 2
pdb|1UVZ|B Chain B, Structure Of Human Thioredoxin 2
pdb|1UVZ|C Chain C, Structure Of Human Thioredoxin 2
pdb|1UVZ|D Chain D, Structure Of Human Thioredoxin 2
pdb|1UVZ|E Chain E, Structure Of Human Thioredoxin 2
pdb|1UVZ|F Chain F, Structure Of Human Thioredoxin 2
pdb|1W4V|A Chain A, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|B Chain B, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|C Chain C, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|D Chain D, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|E Chain E, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W4V|F Chain F, Structure Of The Oxidised Form Of Human Thioredoxin 2
pdb|1W89|A Chain A, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|B Chain B, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|C Chain C, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|D Chain D, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|E Chain E, Structure Of The Reduced Form Of Human Thioredoxin 2
pdb|1W89|F Chain F, Structure Of The Reduced Form Of Human Thioredoxin 2
Length = 119
Score = 27.7 bits (60), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
Query: 107 GSDFVREV--SQAPPDVWVVVILYKDGFAECGLLMQCLEEL-ARKYPATKFVKII---ST 160
G DF V S+ P VVV + C +L LE++ A+++ K+ T
Sbjct: 20 GPDFQDRVVNSETP----VVVDFHAQWCGPCKILGPRLEKMVAKQHGKVVMAKVDIDDHT 75
Query: 161 DCIPNYPDRNLPTVLVYNNGAVKANYVGLR 190
D Y +PTVL NG V +VG++
Sbjct: 76 DLAIEYEVSAVPTVLAMKNGDVVDKFVGIK 105
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 27.3 bits (59), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 131 GFAECGLLMQCLEELARKYPATKFVKIISTDCI 163
G E G++ +C+E ++K KFVK+ TD +
Sbjct: 14 GRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQV 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,489,990
Number of Sequences: 62578
Number of extensions: 228161
Number of successful extensions: 395
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 58
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)