Query 025454
Match_columns 252
No_of_seqs 368 out of 1931
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 06:00:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025454.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025454hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3170 Conserved phosducin-li 100.0 6.8E-63 1.5E-67 413.7 16.8 215 10-225 2-218 (240)
2 cd02988 Phd_like_VIAF Phosduci 100.0 9.3E-58 2E-62 390.1 16.6 191 16-209 1-192 (192)
3 cd02987 Phd_like_Phd Phosducin 100.0 1.8E-37 3.9E-42 261.5 16.6 135 75-209 36-175 (175)
4 PF02114 Phosducin: Phosducin; 100.0 1.9E-36 4.1E-41 270.0 18.8 157 56-214 82-243 (265)
5 KOG1672 ATP binding protein [P 100.0 1.9E-28 4.1E-33 205.4 17.1 166 74-252 34-211 (211)
6 KOG3171 Conserved phosducin-li 99.9 4.6E-26 1E-30 193.6 11.1 155 58-214 97-256 (273)
7 cd02957 Phd_like Phosducin (Ph 99.9 3.3E-25 7.1E-30 173.4 12.9 110 97-206 1-113 (113)
8 cd02989 Phd_like_TxnDC9 Phosdu 99.9 2.5E-24 5.3E-29 169.1 13.0 106 98-206 2-113 (113)
9 KOG0910 Thioredoxin-like prote 99.8 7.4E-21 1.6E-25 154.8 10.6 101 100-208 43-147 (150)
10 KOG0907 Thioredoxin [Posttrans 99.8 7.2E-20 1.6E-24 142.4 12.3 97 104-208 6-105 (106)
11 cd02954 DIM1 Dim1 family; Dim1 99.8 6.3E-20 1.4E-24 144.3 10.8 85 106-191 1-89 (114)
12 cd02985 TRX_CDSP32 TRX family, 99.8 1E-19 2.2E-24 140.2 11.4 96 106-209 2-103 (103)
13 PHA02278 thioredoxin-like prot 99.8 2.7E-19 5.9E-24 138.5 10.3 82 106-190 3-92 (103)
14 PF00085 Thioredoxin: Thioredo 99.8 2.2E-18 4.7E-23 130.1 12.2 99 102-208 1-103 (103)
15 cd03065 PDI_b_Calsequestrin_N 99.8 2.7E-18 5.9E-23 136.4 10.5 100 99-207 8-117 (120)
16 cd03006 PDI_a_EFP1_N PDIa fami 99.8 5.5E-18 1.2E-22 133.3 11.7 90 100-189 9-103 (113)
17 COG3118 Thioredoxin domain-con 99.8 2.4E-18 5.2E-23 153.7 9.7 105 101-211 24-132 (304)
18 PRK09381 trxA thioredoxin; Pro 99.8 1.7E-17 3.6E-22 128.1 12.7 100 101-208 4-107 (109)
19 KOG0908 Thioredoxin-like prote 99.8 5.7E-18 1.2E-22 147.4 10.8 100 101-208 2-105 (288)
20 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 5.3E-18 1.1E-22 129.7 9.2 97 101-204 2-103 (104)
21 cd02963 TRX_DnaJ TRX domain, D 99.7 8.9E-18 1.9E-22 131.1 10.4 100 102-207 6-110 (111)
22 cd02948 TRX_NDPK TRX domain, T 99.7 1.3E-17 2.8E-22 128.1 11.1 92 106-207 6-101 (102)
23 cd02962 TMX2 TMX2 family; comp 99.7 1.8E-17 4E-22 136.8 12.3 106 99-205 27-148 (152)
24 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 1.3E-17 2.7E-22 127.2 9.9 86 101-189 2-91 (101)
25 cd02956 ybbN ybbN protein fami 99.7 2.1E-17 4.4E-22 124.5 10.8 91 108-205 1-95 (96)
26 cd02984 TRX_PICOT TRX domain, 99.7 3.8E-17 8.2E-22 123.0 11.3 92 106-205 1-96 (97)
27 cd02986 DLP Dim1 family, Dim1- 99.7 2.6E-17 5.6E-22 129.0 9.6 77 107-184 2-82 (114)
28 cd02999 PDI_a_ERp44_like PDIa 99.7 3.1E-17 6.7E-22 125.9 9.7 89 108-204 7-99 (100)
29 PTZ00051 thioredoxin; Provisio 99.7 4.2E-17 9.2E-22 123.1 10.3 86 102-190 2-91 (98)
30 PLN00410 U5 snRNP protein, DIM 99.7 6.7E-17 1.5E-21 131.7 11.7 104 103-207 6-118 (142)
31 cd02965 HyaE HyaE family; HyaE 99.7 4.4E-17 9.5E-22 127.5 8.3 86 102-190 12-103 (111)
32 PRK10996 thioredoxin 2; Provis 99.7 2.1E-16 4.6E-21 128.3 12.6 101 99-208 34-138 (139)
33 cd03005 PDI_a_ERp46 PDIa famil 99.7 1.1E-16 2.5E-21 121.2 10.3 93 102-204 2-101 (102)
34 PTZ00062 glutaredoxin; Provisi 99.7 2.3E-16 5E-21 136.0 12.1 90 105-208 4-93 (204)
35 cd02996 PDI_a_ERp44 PDIa famil 99.7 2.9E-16 6.2E-21 121.3 11.0 86 101-189 2-98 (108)
36 TIGR01295 PedC_BrcD bacterioci 99.7 6.7E-16 1.5E-20 122.9 12.6 96 102-206 8-121 (122)
37 cd02994 PDI_a_TMX PDIa family, 99.7 5.2E-16 1.1E-20 118.0 10.7 94 101-206 2-100 (101)
38 cd03002 PDI_a_MPD1_like PDI fa 99.7 4.1E-16 8.9E-21 119.8 9.4 100 102-205 2-108 (109)
39 TIGR01068 thioredoxin thioredo 99.7 1.1E-15 2.4E-20 114.6 11.0 95 105-207 1-99 (101)
40 cd02997 PDI_a_PDIR PDIa family 99.6 1.9E-15 4.1E-20 114.7 10.3 95 101-204 1-103 (104)
41 cd02995 PDI_a_PDI_a'_C PDIa fa 99.6 1.3E-15 2.8E-20 115.4 9.3 85 102-188 2-93 (104)
42 cd02993 PDI_a_APS_reductase PD 99.6 3E-15 6.6E-20 116.1 9.5 99 101-204 2-108 (109)
43 cd03001 PDI_a_P5 PDIa family, 99.6 6E-15 1.3E-19 111.8 10.8 96 102-205 2-102 (103)
44 cd02992 PDI_a_QSOX PDIa family 99.6 4.2E-15 9.1E-20 116.7 9.9 101 100-203 1-110 (114)
45 cd02950 TxlA TRX-like protein 99.6 5.2E-15 1.1E-19 120.6 9.7 91 108-207 11-108 (142)
46 PTZ00443 Thioredoxin domain-co 99.6 1.1E-14 2.3E-19 127.4 11.9 102 100-207 30-137 (224)
47 KOG0190 Protein disulfide isom 99.6 1.6E-15 3.4E-20 144.7 7.1 110 100-217 25-141 (493)
48 cd02949 TRX_NTR TRX domain, no 99.6 3.1E-14 6.6E-19 108.0 11.0 87 111-205 6-96 (97)
49 cd02975 PfPDO_like_N Pyrococcu 99.6 1.8E-14 3.8E-19 113.0 9.8 88 110-206 15-107 (113)
50 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.8E-14 3.9E-19 109.1 8.9 96 102-205 2-105 (105)
51 cd03000 PDI_a_TMX3 PDIa family 99.6 1.9E-14 4.2E-19 110.4 9.0 90 108-208 7-103 (104)
52 TIGR01126 pdi_dom protein disu 99.6 2.6E-14 5.6E-19 107.7 9.2 95 105-208 1-101 (102)
53 cd02953 DsbDgamma DsbD gamma f 99.5 1.4E-14 3E-19 110.9 7.5 89 108-205 2-103 (104)
54 cd02952 TRP14_like Human TRX-r 99.5 2.4E-14 5.2E-19 113.6 8.7 76 106-182 8-102 (119)
55 TIGR00424 APS_reduc 5'-adenyly 99.5 5.2E-14 1.1E-18 134.4 12.3 103 100-207 351-461 (463)
56 cd02947 TRX_family TRX family; 99.5 1.6E-13 3.4E-18 100.0 11.0 88 109-205 2-92 (93)
57 cd02961 PDI_a_family Protein D 99.5 5.2E-14 1.1E-18 104.6 8.5 92 104-204 2-100 (101)
58 PLN02309 5'-adenylylsulfate re 99.5 1.1E-13 2.3E-18 132.2 10.8 104 99-207 344-455 (457)
59 KOG0190 Protein disulfide isom 99.5 1.4E-13 3E-18 131.4 9.2 106 99-210 365-474 (493)
60 TIGR01130 ER_PDI_fam protein d 99.5 3.2E-13 6.9E-18 127.5 10.9 128 76-212 320-457 (462)
61 PTZ00102 disulphide isomerase; 99.5 6E-13 1.3E-17 126.9 12.2 105 99-211 356-467 (477)
62 cd03007 PDI_a_ERp29_N PDIa fam 99.4 6E-13 1.3E-17 105.0 7.7 97 102-208 3-115 (116)
63 TIGR01130 ER_PDI_fam protein d 99.4 1.8E-12 4E-17 122.3 10.3 87 101-190 2-96 (462)
64 cd02951 SoxW SoxW family; SoxW 99.4 2.1E-12 4.6E-17 102.1 8.6 91 109-207 5-117 (125)
65 PTZ00102 disulphide isomerase; 99.4 3.8E-12 8.2E-17 121.4 11.7 99 100-208 32-137 (477)
66 TIGR00412 redox_disulf_2 small 99.3 4E-12 8.7E-17 92.8 7.4 73 124-205 2-75 (76)
67 cd02959 ERp19 Endoplasmic reti 99.3 2.3E-12 5.1E-17 101.7 6.1 72 120-191 19-98 (117)
68 cd02982 PDI_b'_family Protein 99.3 3.8E-12 8.2E-17 96.6 6.9 82 120-207 12-101 (103)
69 TIGR02187 GlrX_arch Glutaredox 99.3 1.7E-11 3.7E-16 106.2 9.9 80 122-207 21-109 (215)
70 PHA02125 thioredoxin-like prot 99.3 1.5E-11 3.3E-16 89.3 8.1 58 124-189 2-62 (75)
71 TIGR00411 redox_disulf_1 small 99.2 8.8E-11 1.9E-15 85.4 9.2 75 123-207 2-80 (82)
72 TIGR02187 GlrX_arch Glutaredox 99.2 1.3E-10 2.9E-15 100.6 10.4 77 122-207 135-214 (215)
73 PRK00293 dipZ thiol:disulfide 99.2 4.7E-11 1E-15 117.4 7.9 101 102-208 454-569 (571)
74 cd03010 TlpA_like_DsbE TlpA-li 99.2 1.2E-10 2.6E-15 92.0 7.9 70 120-190 25-121 (127)
75 TIGR02740 TraF-like TraF-like 99.1 2.6E-10 5.5E-15 102.6 9.9 82 119-207 165-262 (271)
76 cd02973 TRX_GRX_like Thioredox 99.1 1.8E-10 3.9E-15 81.1 6.6 58 124-183 3-63 (67)
77 PRK15412 thiol:disulfide inter 99.1 5E-10 1.1E-14 94.9 9.8 81 119-207 67-174 (185)
78 PRK14018 trifunctional thiored 99.1 2.7E-10 5.8E-15 110.5 9.0 83 119-207 55-171 (521)
79 TIGR02738 TrbB type-F conjugat 99.1 7.4E-10 1.6E-14 91.6 10.2 80 121-207 51-151 (153)
80 TIGR00385 dsbE periplasmic pro 99.1 6.9E-10 1.5E-14 92.9 9.6 82 119-208 62-170 (173)
81 KOG4277 Uncharacterized conser 99.1 2.1E-10 4.6E-15 103.0 6.4 65 120-184 43-114 (468)
82 PF13098 Thioredoxin_2: Thiore 99.0 3.4E-10 7.5E-15 87.2 5.0 81 119-205 4-112 (112)
83 cd03009 TryX_like_TryX_NRX Try 99.0 5.2E-10 1.1E-14 88.9 5.8 67 119-185 17-115 (131)
84 cd02966 TlpA_like_family TlpA- 99.0 2.4E-09 5.3E-14 80.6 8.1 69 120-188 19-116 (116)
85 KOG0912 Thiol-disulfide isomer 99.0 1.2E-09 2.7E-14 98.1 7.0 77 106-185 2-87 (375)
86 cd02955 SSP411 TRX domain, SSP 99.0 5.4E-09 1.2E-13 83.5 10.1 80 107-189 5-100 (124)
87 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 2.8E-09 6.1E-14 80.3 7.7 61 122-184 14-77 (89)
88 cd02964 TryX_like_family Trypa 99.0 1.5E-09 3.3E-14 86.6 6.6 68 119-186 16-116 (132)
89 PRK03147 thiol-disulfide oxido 98.9 5.8E-09 1.3E-13 86.2 9.4 83 120-208 61-171 (173)
90 PLN02919 haloacid dehalogenase 98.9 3E-09 6.5E-14 111.3 9.2 83 119-207 419-534 (1057)
91 cd03008 TryX_like_RdCVF Trypar 98.9 3.2E-09 6.9E-14 87.2 7.4 67 119-185 24-128 (146)
92 PRK11509 hydrogenase-1 operon 98.9 2.2E-08 4.8E-13 80.7 10.7 95 105-208 22-123 (132)
93 cd03012 TlpA_like_DipZ_like Tl 98.9 1.1E-08 2.5E-13 80.8 8.6 71 119-189 22-125 (126)
94 cd03011 TlpA_like_ScsD_MtbDsbE 98.9 9.6E-09 2.1E-13 80.2 7.7 70 120-190 20-113 (123)
95 cd02967 mauD Methylamine utili 98.8 7.8E-09 1.7E-13 79.7 6.8 65 120-184 21-110 (114)
96 PF13905 Thioredoxin_8: Thiore 98.8 1E-08 2.2E-13 76.7 6.7 62 120-181 1-94 (95)
97 KOG0191 Thioredoxin/protein di 98.8 6E-09 1.3E-13 97.7 5.7 82 97-180 26-111 (383)
98 COG4232 Thiol:disulfide interc 98.7 2.9E-08 6.3E-13 96.3 7.1 105 97-208 450-567 (569)
99 KOG0914 Thioredoxin-like prote 98.7 1.9E-08 4.1E-13 86.7 5.1 95 98-193 122-228 (265)
100 PRK13728 conjugal transfer pro 98.7 1.4E-07 3E-12 80.0 9.8 78 124-208 73-170 (181)
101 COG0526 TrxA Thiol-disulfide i 98.7 2E-08 4.3E-13 74.5 4.0 69 120-188 32-107 (127)
102 PF08534 Redoxin: Redoxin; In 98.7 7.5E-08 1.6E-12 77.6 7.6 83 119-205 27-146 (146)
103 KOG0191 Thioredoxin/protein di 98.7 6.1E-08 1.3E-12 90.9 8.0 80 101-182 145-230 (383)
104 cd02958 UAS UAS family; UAS is 98.6 2.1E-07 4.5E-12 72.5 8.6 82 120-207 17-109 (114)
105 TIGR02661 MauD methylamine deh 98.6 2.8E-07 6E-12 78.4 8.8 81 119-207 73-177 (189)
106 cd01659 TRX_superfamily Thiore 98.5 6E-07 1.3E-11 59.2 6.5 57 124-180 1-63 (69)
107 cd02960 AGR Anterior Gradient 98.4 6.2E-07 1.3E-11 72.2 6.9 70 120-191 23-101 (130)
108 PLN02399 phospholipid hydroper 98.4 1.8E-06 3.9E-11 76.2 10.4 41 119-159 98-140 (236)
109 PTZ00056 glutathione peroxidas 98.4 1.4E-06 3E-11 74.9 9.0 41 119-159 38-80 (199)
110 TIGR02196 GlrX_YruB Glutaredox 98.4 1E-06 2.2E-11 61.8 6.8 65 124-205 2-73 (74)
111 cd02969 PRX_like1 Peroxiredoxi 98.4 2.4E-06 5.2E-11 70.9 9.8 87 120-207 25-150 (171)
112 KOG0911 Glutaredoxin-related p 98.3 1.6E-07 3.5E-12 81.3 1.3 86 101-191 2-91 (227)
113 KOG1731 FAD-dependent sulfhydr 98.3 2.6E-07 5.7E-12 89.2 2.8 80 100-181 39-127 (606)
114 PF14595 Thioredoxin_9: Thiore 98.3 6.1E-06 1.3E-10 66.3 10.2 80 109-189 31-117 (129)
115 PLN02412 probable glutathione 98.3 4.5E-06 9.8E-11 69.6 9.5 40 120-159 29-70 (167)
116 smart00594 UAS UAS domain. 98.3 2.9E-06 6.4E-11 67.1 7.3 92 108-205 14-121 (122)
117 cd00340 GSH_Peroxidase Glutath 98.3 4.2E-06 9.2E-11 68.4 8.1 39 119-158 21-61 (152)
118 PF13899 Thioredoxin_7: Thiore 98.2 8.4E-07 1.8E-11 65.2 2.5 59 120-178 17-81 (82)
119 TIGR01626 ytfJ_HI0045 conserve 98.2 8.1E-06 1.8E-10 69.5 8.6 82 119-206 58-177 (184)
120 TIGR02200 GlrX_actino Glutared 98.2 9.6E-06 2.1E-10 57.8 7.4 55 124-184 2-64 (77)
121 TIGR02540 gpx7 putative glutat 98.1 2.4E-05 5.3E-10 63.8 9.8 83 119-207 21-151 (153)
122 PF06110 DUF953: Eukaryotic pr 98.1 1.2E-05 2.6E-10 63.8 7.5 79 107-188 5-104 (119)
123 PRK11200 grxA glutaredoxin 1; 98.1 2.2E-05 4.8E-10 57.9 7.6 70 124-207 3-81 (85)
124 PTZ00256 glutathione peroxidas 98.0 3.1E-05 6.8E-10 65.4 9.3 39 120-158 40-81 (183)
125 cd03017 PRX_BCP Peroxiredoxin 98.0 2E-05 4.3E-10 62.6 7.4 71 120-190 23-130 (140)
126 TIGR02180 GRX_euk Glutaredoxin 98.0 9.7E-06 2.1E-10 58.8 4.4 57 124-183 1-65 (84)
127 cd03014 PRX_Atyp2cys Peroxired 98.0 2.9E-05 6.3E-10 62.2 7.5 71 120-190 26-130 (143)
128 PRK00522 tpx lipid hydroperoxi 97.9 6.3E-05 1.4E-09 62.6 9.3 40 120-159 44-84 (167)
129 PF13728 TraF: F plasmid trans 97.9 4.5E-05 9.9E-10 66.4 8.7 62 120-181 120-194 (215)
130 KOG3425 Uncharacterized conser 97.9 6.5E-05 1.4E-09 59.3 8.2 73 107-179 12-104 (128)
131 PF00578 AhpC-TSA: AhpC/TSA fa 97.8 3.5E-05 7.6E-10 59.7 5.8 65 120-184 25-123 (124)
132 cd03015 PRX_Typ2cys Peroxiredo 97.8 0.00015 3.3E-09 60.4 9.5 86 120-207 29-155 (173)
133 TIGR03137 AhpC peroxiredoxin. 97.8 0.0001 2.2E-09 62.6 8.5 85 120-206 31-153 (187)
134 PF13192 Thioredoxin_3: Thiore 97.8 0.00013 2.7E-09 52.9 7.6 72 125-206 3-76 (76)
135 PHA03050 glutaredoxin; Provisi 97.7 2E-05 4.2E-10 61.5 2.9 97 108-213 3-107 (108)
136 KOG2501 Thioredoxin, nucleored 97.7 6E-05 1.3E-09 62.3 5.2 67 119-185 32-131 (157)
137 TIGR02739 TraF type-F conjugat 97.7 0.00044 9.4E-09 61.8 10.8 82 121-206 151-245 (256)
138 PRK09437 bcp thioredoxin-depen 97.7 0.00017 3.6E-09 58.7 7.3 71 120-190 30-140 (154)
139 cd02970 PRX_like2 Peroxiredoxi 97.6 0.0002 4.2E-09 57.2 7.2 39 122-160 26-66 (149)
140 PRK13703 conjugal pilus assemb 97.6 0.00058 1.3E-08 60.8 10.6 82 121-206 144-238 (248)
141 TIGR02183 GRXA Glutaredoxin, G 97.6 0.00012 2.6E-09 54.4 5.3 71 124-208 2-81 (86)
142 cd03018 PRX_AhpE_like Peroxire 97.6 0.00017 3.8E-09 57.8 6.0 70 121-190 29-134 (149)
143 PRK15000 peroxidase; Provision 97.5 0.00047 1E-08 59.3 8.7 85 119-205 33-158 (200)
144 PRK10382 alkyl hydroperoxide r 97.5 0.0012 2.7E-08 56.2 11.0 97 100-206 19-153 (187)
145 cd02971 PRX_family Peroxiredox 97.5 0.00035 7.5E-09 55.3 7.0 71 120-190 22-130 (140)
146 cd02976 NrdH NrdH-redoxin (Nrd 97.4 0.00072 1.6E-08 46.9 7.1 50 124-180 2-58 (73)
147 cd03419 GRX_GRXh_1_2_like Glut 97.4 0.00032 7E-09 50.6 5.2 55 124-183 2-64 (82)
148 cd02968 SCO SCO (an acronym fo 97.4 0.00032 7E-09 55.7 5.3 40 120-159 22-67 (142)
149 PF13848 Thioredoxin_6: Thiore 97.4 0.0041 8.8E-08 51.3 12.0 107 91-206 68-183 (184)
150 PF07449 HyaE: Hydrogenase-1 e 97.3 0.00077 1.7E-08 52.5 6.2 88 102-192 11-104 (107)
151 KOG3414 Component of the U4/U6 97.3 0.0018 3.8E-08 51.7 8.3 78 106-184 10-91 (142)
152 cd02066 GRX_family Glutaredoxi 97.2 0.0006 1.3E-08 47.0 4.1 56 124-186 2-64 (72)
153 cd02981 PDI_b_family Protein D 97.1 0.0041 8.8E-08 46.3 8.8 93 103-207 2-96 (97)
154 TIGR02189 GlrX-like_plant Glut 97.1 0.00072 1.6E-08 51.7 4.5 78 124-211 10-97 (99)
155 PF02966 DIM1: Mitosis protein 97.1 0.0038 8.3E-08 50.2 8.7 77 106-184 7-88 (133)
156 cd02991 UAS_ETEA UAS family, E 97.1 0.003 6.6E-08 49.7 8.1 81 120-208 17-112 (116)
157 TIGR03143 AhpF_homolog putativ 97.1 0.0041 8.8E-08 61.3 10.4 75 121-205 476-554 (555)
158 PRK10877 protein disulfide iso 97.0 0.0035 7.7E-08 55.1 8.8 80 119-208 106-230 (232)
159 KOG0913 Thiol-disulfide isomer 97.0 0.0002 4.3E-09 62.7 0.8 84 101-190 25-113 (248)
160 PF00462 Glutaredoxin: Glutare 97.0 0.0013 2.8E-08 45.0 4.7 53 124-183 1-60 (60)
161 PRK15317 alkyl hydroperoxide r 97.0 0.0026 5.7E-08 62.0 8.2 59 123-183 119-180 (517)
162 PRK13190 putative peroxiredoxi 96.9 0.0052 1.1E-07 52.8 8.7 85 120-206 27-151 (202)
163 cd03020 DsbA_DsbC_DsbG DsbA fa 96.8 0.0065 1.4E-07 51.6 8.2 25 120-144 77-101 (197)
164 cd03016 PRX_1cys Peroxiredoxin 96.8 0.0056 1.2E-07 52.5 7.9 85 121-207 26-152 (203)
165 PTZ00137 2-Cys peroxiredoxin; 96.8 0.015 3.2E-07 52.3 10.6 85 120-206 98-222 (261)
166 COG2143 Thioredoxin-related pr 96.8 0.0099 2.2E-07 49.3 8.6 73 119-191 41-137 (182)
167 PRK10329 glutaredoxin-like pro 96.7 0.012 2.5E-07 43.3 7.9 68 124-208 3-76 (81)
168 PRK10606 btuE putative glutath 96.7 0.0026 5.7E-08 54.1 5.0 40 119-159 24-65 (183)
169 PF11009 DUF2847: Protein of u 96.7 0.0095 2.1E-07 46.2 7.5 83 104-187 3-95 (105)
170 TIGR02190 GlrX-dom Glutaredoxi 96.7 0.0046 1E-07 44.9 5.4 54 123-183 9-68 (79)
171 PTZ00253 tryparedoxin peroxida 96.7 0.012 2.7E-07 50.2 8.9 85 120-206 36-161 (199)
172 PRK13191 putative peroxiredoxi 96.6 0.015 3.3E-07 50.6 9.4 85 120-206 33-158 (215)
173 PRK13599 putative peroxiredoxi 96.6 0.016 3.5E-07 50.4 9.4 85 120-206 28-153 (215)
174 PRK13189 peroxiredoxin; Provis 96.6 0.018 3.8E-07 50.3 9.5 85 120-206 35-160 (222)
175 cd03023 DsbA_Com1_like DsbA fa 96.6 0.0061 1.3E-07 48.5 6.0 40 120-159 5-44 (154)
176 TIGR03140 AhpF alkyl hydropero 96.5 0.009 2E-07 58.3 8.1 60 122-183 119-181 (515)
177 KOG2603 Oligosaccharyltransfer 96.2 0.026 5.7E-07 51.5 8.7 105 101-207 41-164 (331)
178 cd03027 GRX_DEP Glutaredoxin ( 96.1 0.02 4.3E-07 40.7 6.0 54 124-184 3-63 (73)
179 PF01216 Calsequestrin: Calseq 96.1 0.032 7E-07 51.7 8.8 99 99-207 33-142 (383)
180 cd02972 DsbA_family DsbA famil 96.1 0.019 4.1E-07 41.5 5.9 34 124-157 1-35 (98)
181 cd02983 P5_C P5 family, C-term 96.1 0.061 1.3E-06 43.1 9.3 99 101-207 3-113 (130)
182 cd03029 GRX_hybridPRX5 Glutare 96.1 0.021 4.6E-07 40.3 5.9 53 124-183 3-61 (72)
183 TIGR02181 GRX_bact Glutaredoxi 96.0 0.012 2.7E-07 42.2 4.4 54 124-184 1-61 (79)
184 cd03418 GRX_GRXb_1_3_like Glut 95.9 0.027 5.8E-07 39.8 6.0 54 124-184 2-63 (75)
185 KOG1752 Glutaredoxin and relat 95.7 0.029 6.3E-07 43.5 5.8 79 124-210 16-102 (104)
186 TIGR00365 monothiol glutaredox 95.6 0.056 1.2E-06 41.0 7.0 56 122-184 13-79 (97)
187 PRK11657 dsbG disulfide isomer 95.5 0.12 2.6E-06 45.9 9.7 30 119-148 116-145 (251)
188 TIGR02194 GlrX_NrdH Glutaredox 95.4 0.028 6E-07 39.9 4.4 56 125-189 2-63 (72)
189 PRK10824 glutaredoxin-4; Provi 95.3 0.029 6.3E-07 44.2 4.6 91 109-210 6-105 (115)
190 cd03028 GRX_PICOT_like Glutare 95.3 0.051 1.1E-06 40.5 5.7 55 122-183 9-74 (90)
191 PRK10638 glutaredoxin 3; Provi 95.0 0.076 1.7E-06 38.6 5.7 54 124-184 4-64 (83)
192 cd03019 DsbA_DsbA DsbA family, 94.7 0.062 1.3E-06 44.0 5.1 37 121-157 16-53 (178)
193 cd03072 PDI_b'_ERp44 PDIb' fam 94.6 0.18 3.8E-06 39.2 7.2 98 102-208 1-107 (111)
194 cd03073 PDI_b'_ERp72_ERp57 PDI 94.3 0.25 5.5E-06 38.4 7.4 94 104-207 3-109 (111)
195 PF13462 Thioredoxin_4: Thiore 94.1 0.12 2.6E-06 41.5 5.5 40 120-159 12-54 (162)
196 PRK12759 bifunctional gluaredo 93.9 0.093 2E-06 50.0 5.1 54 124-184 4-72 (410)
197 PF03190 Thioredox_DsbH: Prote 93.8 0.15 3.1E-06 42.7 5.6 78 106-186 26-119 (163)
198 cd03066 PDI_b_Calsequestrin_mi 93.8 0.71 1.5E-05 34.9 9.0 95 102-208 2-100 (102)
199 PRK10954 periplasmic protein d 93.6 0.089 1.9E-06 45.1 4.1 39 121-159 38-80 (207)
200 TIGR03143 AhpF_homolog putativ 93.6 0.27 6E-06 48.4 8.0 68 122-189 368-440 (555)
201 COG0695 GrxC Glutaredoxin and 93.1 0.042 9E-07 40.3 1.0 52 124-182 3-63 (80)
202 PF13848 Thioredoxin_6: Thiore 93.0 0.2 4.4E-06 41.0 5.2 67 137-209 7-75 (184)
203 PF05768 DUF836: Glutaredoxin- 92.7 0.44 9.6E-06 34.6 6.1 77 124-206 2-81 (81)
204 PF07912 ERp29_N: ERp29, N-ter 92.4 0.99 2.1E-05 36.0 8.0 101 102-211 6-121 (126)
205 PF00837 T4_deiodinase: Iodoth 92.3 0.92 2E-05 40.2 8.5 57 101-157 83-140 (237)
206 cd03069 PDI_b_ERp57 PDIb famil 89.6 2.6 5.6E-05 32.0 7.9 97 102-207 2-102 (104)
207 PF06053 DUF929: Domain of unk 89.1 1.7 3.7E-05 38.8 7.4 74 97-179 40-114 (249)
208 PTZ00062 glutaredoxin; Provisi 88.6 1.3 2.8E-05 38.3 6.2 67 108-184 103-180 (204)
209 cd02974 AhpF_NTD_N Alkyl hydro 87.5 3.8 8.2E-05 31.0 7.4 52 122-181 20-71 (94)
210 cd03068 PDI_b_ERp72 PDIb famil 87.2 3.7 8E-05 31.5 7.4 100 102-207 2-106 (107)
211 PHA03075 glutaredoxin-like pro 81.9 1.4 2.9E-05 34.9 2.7 29 122-150 3-31 (123)
212 cd03013 PRX5_like Peroxiredoxi 80.9 2.6 5.6E-05 34.4 4.3 39 121-159 30-73 (155)
213 PRK15317 alkyl hydroperoxide r 79.6 11 0.00025 36.6 9.0 61 121-189 19-80 (517)
214 PF01323 DSBA: DSBA-like thior 77.2 3.4 7.5E-05 34.0 4.0 36 124-159 2-37 (193)
215 cd03031 GRX_GRX_like Glutaredo 74.5 6 0.00013 32.4 4.6 47 131-184 15-72 (147)
216 COG4545 Glutaredoxin-related p 74.4 2.3 4.9E-05 31.2 1.8 55 125-183 5-76 (85)
217 TIGR03140 AhpF alkyl hydropero 73.7 22 0.00048 34.6 9.2 61 122-189 20-81 (515)
218 KOG2640 Thioredoxin [Function 72.8 0.91 2E-05 41.6 -0.7 58 121-178 77-138 (319)
219 PF14097 SpoVAE: Stage V sporu 70.1 67 0.0015 27.2 10.7 59 97-157 30-88 (180)
220 COG3634 AhpF Alkyl hydroperoxi 69.2 13 0.00028 35.3 5.9 73 108-183 105-180 (520)
221 PF10281 Ish1: Putative stress 66.9 19 0.00041 22.3 4.7 34 195-232 3-36 (38)
222 cd00570 GST_N_family Glutathio 66.5 4.2 9.1E-05 26.7 1.8 53 126-183 3-60 (71)
223 COG1651 DsbG Protein-disulfide 66.1 11 0.00024 32.6 4.8 38 121-158 85-122 (244)
224 PF13743 Thioredoxin_5: Thiore 63.9 11 0.00024 31.4 4.2 32 126-157 2-34 (176)
225 COG1225 Bcp Peroxiredoxin [Pos 62.9 13 0.00029 30.8 4.4 39 119-157 29-70 (157)
226 PF04592 SelP_N: Selenoprotein 62.6 10 0.00022 33.6 3.8 42 119-160 25-71 (238)
227 cd02977 ArsC_family Arsenate R 61.6 6.9 0.00015 29.5 2.3 30 125-159 2-31 (105)
228 cd03060 GST_N_Omega_like GST_N 61.4 32 0.00069 23.5 5.6 54 126-183 3-60 (71)
229 COG2118 DNA-binding protein [G 60.0 10 0.00023 29.8 3.0 20 75-94 2-21 (116)
230 KOG4752 Ribosomal protein L41 59.9 12 0.00026 21.0 2.4 15 80-94 3-17 (26)
231 KOG2507 Ubiquitin regulatory p 59.6 41 0.00089 32.5 7.4 81 111-191 9-99 (506)
232 cd03025 DsbA_FrnE_like DsbA fa 57.6 14 0.0003 30.4 3.7 32 124-155 3-35 (193)
233 cd03051 GST_N_GTT2_like GST_N 57.4 15 0.00032 24.9 3.3 52 126-181 3-61 (74)
234 PF01323 DSBA: DSBA-like thior 57.1 15 0.00031 30.2 3.8 33 163-205 160-192 (193)
235 PF13462 Thioredoxin_4: Thiore 55.5 15 0.00032 29.1 3.5 32 164-206 130-161 (162)
236 TIGR01617 arsC_related transcr 54.7 19 0.00041 27.8 3.8 79 125-211 2-90 (117)
237 cd03035 ArsC_Yffb Arsenate Red 54.6 11 0.00023 28.9 2.3 20 125-144 2-21 (105)
238 PRK09301 circadian clock prote 52.8 36 0.00079 26.3 4.9 86 120-214 5-95 (103)
239 COG0278 Glutaredoxin-related p 52.1 45 0.00098 25.8 5.3 57 122-184 16-83 (105)
240 cd03045 GST_N_Delta_Epsilon GS 48.0 33 0.00072 23.3 3.9 51 126-181 3-60 (74)
241 cd03059 GST_N_SspA GST_N famil 47.7 56 0.0012 22.0 5.0 48 125-175 2-53 (73)
242 cd03036 ArsC_like Arsenate Red 47.4 16 0.00035 28.0 2.3 30 125-159 2-31 (111)
243 PRK01655 spxA transcriptional 46.9 20 0.00043 28.5 2.9 31 124-159 2-32 (131)
244 cd03037 GST_N_GRX2 GST_N famil 46.4 6.8 0.00015 26.9 0.1 53 126-182 3-58 (71)
245 PF10587 EF-1_beta_acid: Eukar 46.0 26 0.00056 20.6 2.4 18 74-91 8-25 (28)
246 PF02630 SCO1-SenC: SCO1/SenC; 45.8 32 0.0007 28.5 4.1 41 119-159 51-96 (174)
247 cd03041 GST_N_2GST_N GST_N fam 43.4 7.8 0.00017 27.3 -0.0 53 125-180 3-60 (77)
248 PRK12559 transcriptional regul 39.4 30 0.00066 27.5 2.9 21 124-144 2-22 (131)
249 KOG4003 Pyrazinamidase/nicotin 39.2 15 0.00033 31.4 1.1 19 9-27 133-152 (223)
250 cd03032 ArsC_Spx Arsenate Redu 38.8 32 0.0007 26.4 2.8 31 124-159 2-32 (115)
251 KOG4277 Uncharacterized conser 38.4 79 0.0017 29.4 5.6 95 82-180 115-210 (468)
252 cd03056 GST_N_4 GST_N family, 38.3 46 0.001 22.4 3.4 53 126-183 3-62 (73)
253 cd03074 PDI_b'_Calsequestrin_C 38.3 2E+02 0.0043 22.7 10.3 103 104-207 5-118 (120)
254 cd03019 DsbA_DsbA DsbA family, 38.1 42 0.00091 27.0 3.6 20 163-184 136-155 (178)
255 PF14261 DUF4351: Domain of un 37.2 17 0.00037 25.0 0.9 29 21-69 16-44 (59)
256 TIGR02742 TrbC_Ftype type-F co 36.7 58 0.0013 26.1 4.1 20 162-181 63-82 (130)
257 PF08806 Sep15_SelM: Sep15/Sel 36.3 44 0.00095 24.3 3.0 35 170-209 41-76 (78)
258 PF11287 DUF3088: Protein of u 36.2 22 0.00048 27.9 1.5 76 132-210 24-109 (112)
259 cd03040 GST_N_mPGES2 GST_N fam 36.0 36 0.00079 23.5 2.5 48 125-177 3-54 (77)
260 KOG3431 Apoptosis-related prot 35.2 31 0.00068 27.5 2.2 19 76-94 2-20 (129)
261 cd02978 KaiB_like KaiB-like fa 34.1 69 0.0015 23.1 3.7 53 123-175 3-60 (72)
262 cd03067 PDI_b_PDIR_N PDIb fami 32.6 2.3E+02 0.0049 22.1 6.4 90 107-206 9-109 (112)
263 cd01840 SGNH_hydrolase_yrhL_li 31.8 1.9E+02 0.0041 22.8 6.4 50 107-157 66-116 (150)
264 COG4604 CeuD ABC-type enteroch 30.9 88 0.0019 27.6 4.4 50 132-185 168-217 (252)
265 PRK04239 hypothetical protein; 30.8 47 0.001 26.0 2.5 18 78-95 2-19 (110)
266 PRK13344 spxA transcriptional 30.1 51 0.0011 26.2 2.8 31 124-159 2-32 (132)
267 PRK05463 hypothetical protein; 29.5 3.2E+02 0.0069 24.7 7.8 79 137-218 42-138 (262)
268 cd03055 GST_N_Omega GST_N fami 28.9 44 0.00095 24.2 2.0 50 124-176 19-72 (89)
269 TIGR02654 circ_KaiB circadian 28.8 73 0.0016 23.8 3.2 68 121-189 3-75 (87)
270 PF04134 DUF393: Protein of un 28.6 47 0.001 25.0 2.3 54 127-181 2-61 (114)
271 cd03025 DsbA_FrnE_like DsbA fa 28.4 58 0.0013 26.6 2.9 19 163-181 162-180 (193)
272 PF06491 Disulph_isomer: Disul 28.3 3.2E+02 0.007 22.1 9.8 96 84-187 3-112 (136)
273 PF13417 GST_N_3: Glutathione 27.5 1.8E+02 0.0038 20.0 5.0 52 127-183 2-57 (75)
274 PF04909 Amidohydro_2: Amidohy 27.2 30 0.00065 29.6 1.0 49 109-159 121-172 (273)
275 PF05988 DUF899: Bacterial pro 27.1 1.1E+02 0.0025 26.6 4.5 39 119-157 67-112 (211)
276 KOG0912 Thiol-disulfide isomer 27.0 5.3E+02 0.011 24.2 10.5 146 80-237 87-257 (375)
277 PF09673 TrbC_Ftype: Type-F co 25.8 2E+02 0.0044 22.1 5.4 38 140-179 42-80 (113)
278 COG5494 Predicted thioredoxin/ 24.7 4.4E+02 0.0095 23.3 7.6 68 127-207 16-86 (265)
279 TIGR02945 SUF_assoc FeS assemb 24.6 1.2E+02 0.0027 22.3 3.9 39 121-159 39-77 (99)
280 PF06764 DUF1223: Protein of u 24.5 1.9E+02 0.0042 24.9 5.5 76 123-208 1-97 (202)
281 PF14424 Toxin-deaminase: The 24.2 1.5E+02 0.0032 23.8 4.5 26 129-157 105-130 (133)
282 cd03033 ArsC_15kD Arsenate Red 22.9 89 0.0019 24.2 2.9 21 124-144 2-22 (113)
283 PRK00964 tetrahydromethanopter 21.7 57 0.0012 28.7 1.7 81 130-212 47-134 (225)
284 cd03053 GST_N_Phi GST_N family 21.7 1.7E+02 0.0036 19.8 3.9 52 126-182 4-62 (76)
285 COG3581 Uncharacterized protei 20.7 1.8E+02 0.0038 28.0 4.7 63 105-167 54-120 (420)
286 PF10297 Hap4_Hap_bind: Minima 20.6 53 0.0011 17.1 0.7 11 24-34 3-13 (17)
No 1
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.8e-63 Score=413.74 Aligned_cols=215 Identities=48% Similarity=0.800 Sum_probs=202.3
Q ss_pred CCCCCCchhhHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCHHHHhhccCCCCCCcHHHHHHHHHHHHHH
Q 025454 10 DVEGASTQWDDIQRKLGNLPPKPPAFKPSAFEPAVDPDSVPKDKSWVDEKTEEELEELEDDPDLDDDRFLEEYRKKRLAE 89 (252)
Q Consensus 10 ~~~~~~Tew~di~r~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~led~~~~~Dd~~l~~yR~kRl~e 89 (252)
++|+++|||||||||+||||+|+|.+. +.+++++.+..+++++++|++++++||++|||+.|.+|++||++||++||+|
T Consensus 2 ~d~~~dtewnDIlRkkGiLPekep~~~-~~~~ea~~~~~~~~~~~~~edk~leeLeelEDded~dDerfLE~YR~kRl~E 80 (240)
T KOG3170|consen 2 DDESEDTEWNDILRKKGILPEKEPSPD-AKLEEALEEAIAKSHENRLEDKDLEELEELEDDEDSDDERFLEMYRIKRLAE 80 (240)
T ss_pred CCcccccchHHHHHhcCCCCCCCCCcc-hhhhHHHHHHHHHHHHhhhhcccHHHHHHhhhcccccHHHHHHHHHHHHHHH
Confidence 589999999999999999999999865 5567776677777899999999999999999998889999999999999999
Q ss_pred HHHHhhhcCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCC
Q 025454 90 MREATKISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDR 169 (252)
Q Consensus 90 l~~~~~~~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~ 169 (252)
|++.+.+++||+|++||+.+|+++|++++++.|||||+|..+.+.|+++..+|+.||.+||.+|||+|.++.|+++||.+
T Consensus 81 ~r~~~~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpNYPe~ 160 (240)
T KOG3170|consen 81 WRATAEKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPNYPES 160 (240)
T ss_pred HHHHHHHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHhcCCCCCCCCCCC-CcchHH
Q 025454 170 NLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSDPVLNDGQSGS-DPSRKT 225 (252)
Q Consensus 170 ~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~g~i~~~~~~~~-~~~~~~ 225 (252)
++|||+||..|.+.++++|+..| |+++|.++|+++|.+.|++.+++..++ ++++++
T Consensus 161 nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga~l~d~~~~D~~~~~Ed 218 (240)
T KOG3170|consen 161 NLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGAALTDGDNEDDEESRED 218 (240)
T ss_pred CCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhccccccccccCCccccHHH
Confidence 99999999999999999999999 699999999999999999999998555 444444
No 2
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=9.3e-58 Score=390.09 Aligned_cols=191 Identities=53% Similarity=0.865 Sum_probs=172.5
Q ss_pred chhhHHHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHhh
Q 025454 16 TQWDDIQRKLGNLPPKPPAFKPSAFEPAVDPDSVPKDKSWVDEKTEEELEELEDDPDLDDDRFLEEYRKKRLAEMREATK 95 (252)
Q Consensus 16 Tew~di~r~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~led~~~~~Dd~~l~~yR~kRl~el~~~~~ 95 (252)
||||||||||||||||||+++++...+. ......++.+++++++++||++++|+ ++|++||++||++||+||++.++
T Consensus 1 tew~di~r~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~~~~el~~~~d~--~~d~~~Le~yR~kRl~el~~~~~ 77 (192)
T cd02988 1 TEWNDILRKKGILPPKPPSPKEEEEEAL-ELAIQEAHENALEKKLLDELDEELDE--EEDDRFLEEYRRKRLAEMKALAE 77 (192)
T ss_pred CchhHHHHHcCCCCCCCCCCchhhHHHH-HHHHHHHHHhHhhhccHHHHHHhhcc--cccHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999988665433322 22223346789999999999999886 45556999999999999999988
Q ss_pred hcCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEE
Q 025454 96 ISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVL 175 (252)
Q Consensus 96 ~~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTll 175 (252)
+++||.|++|+.++|..+|++++++++||||||++||++|+.|+|+|.+||++|+.++|++|+++.++++|+++++|||+
T Consensus 78 ~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~~~~~i~~lPTll 157 (192)
T cd02988 78 KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCIPNYPDKNLPTIL 157 (192)
T ss_pred hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhHhhCCCCCCCEEE
Confidence 99999999999999999999887778999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCeEEEEeeccccc-CCCCCHHHHHHHHHhcC
Q 025454 176 VYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSD 209 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~g 209 (252)
+|++|+++++++|+.++ |++|+.++||++|.++|
T Consensus 158 iyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~g 192 (192)
T cd02988 158 VYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQVG 192 (192)
T ss_pred EEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhcC
Confidence 99999999999999999 78999999999999876
No 3
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=100.00 E-value=1.8e-37 Score=261.50 Aligned_cols=135 Identities=30% Similarity=0.542 Sum_probs=126.6
Q ss_pred cHHHHHHHHHHHHHHHHHHh-hhcCCCceEEcCh-hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCc
Q 025454 75 DDRFLEEYRKKRLAEMREAT-KISRFGSVMPISG-SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPAT 152 (252)
Q Consensus 75 Dd~~l~~yR~kRl~el~~~~-~~~~fG~v~eIs~-~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~v 152 (252)
+|+||++||++||+||++.. ++.+||.|++|+. ++|.+.|++++++++||||||++||++|+.|.|+|..||.+||.+
T Consensus 36 ~e~~l~~~R~~R~~el~~~~~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~v 115 (175)
T cd02987 36 KEEFLQQYREQRMQEMHAKLPFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAV 115 (175)
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCe
Confidence 47899999999999999865 6788999999988 999999998776779999999999999999999999999999999
Q ss_pred eEEEEeccC--CCCCCCCCcccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHhcC
Q 025454 153 KFVKIISTD--CIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSD 209 (252)
Q Consensus 153 kFvkI~~~~--~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~g 209 (252)
+|++|+++. ++.+|+|+++|||++|++|+++++++|+..+ |.+|+.++||++|.++|
T Consensus 116 kF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~g 175 (175)
T cd02987 116 KFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEYG 175 (175)
T ss_pred EEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhcC
Confidence 999999985 6789999999999999999999999999997 78999999999999876
No 4
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=100.00 E-value=1.9e-36 Score=270.00 Aligned_cols=157 Identities=41% Similarity=0.786 Sum_probs=124.5
Q ss_pred ccccCHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHh-hhcCCCceEEcC-hhhHHHHHHcCCCCceEEEEEEcCCCc
Q 025454 56 VDEKTEEELEELEDDPDLDDDRFLEEYRKKRLAEMREAT-KISRFGSVMPIS-GSDFVREVSQAPPDVWVVVILYKDGFA 133 (252)
Q Consensus 56 ~~~~~~~el~~led~~~~~Dd~~l~~yR~kRl~el~~~~-~~~~fG~v~eIs-~~~f~~~V~~~~~~~~VVV~fya~wc~ 133 (252)
.+.++++|++.+++| ++|++||++||++||+||++.. ..++||.|++|+ .++|++.|.+.+++++||||||.+.++
T Consensus 82 ~~~~~~~e~e~~~~d--~eDeefL~~yR~qRm~El~~~~~~~~~fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~ 159 (265)
T PF02114_consen 82 SEKMSLDELEELEDD--EEDEEFLEQYREQRMQELKQKLQKGPRFGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFP 159 (265)
T ss_dssp --SS-HHHHHHHCC------HHHHHHHHHHHHHHHHHHH-------SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSC
T ss_pred cccccHhHHhhhhcc--cccHHHHHHHHHHHHHHHHHHHHhCCcCceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCc
Confidence 345688999988765 6789999999999999999765 458899999995 689999999888889999999999999
Q ss_pred hhhhHHHHHHHHHHHCCCceEEEEeccC--CCCCCCCCcccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHhcCC
Q 025454 134 ECGLLMQCLEELARKYPATKFVKIISTD--CIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSDP 210 (252)
Q Consensus 134 ~Ck~l~~~l~~LA~ky~~vkFvkI~~~~--~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~g~ 210 (252)
.|+.|+.+|..||.+||.||||+|.+.. ++.+|++++|||||+|++|.++++++|+..+ |++|+..+||++|.++|+
T Consensus 160 ~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 160 RCEIMNSCLECLARKYPEVKFVKIRASKCPASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp CHHHHHHHHHHHHHH-TTSEEEEEEECGCCTTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHhCCceEEEEEehhccCcccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 9999999999999999999999999876 5799999999999999999999999999988 899999999999999999
Q ss_pred CCCC
Q 025454 211 VLND 214 (252)
Q Consensus 211 i~~~ 214 (252)
|+..
T Consensus 240 l~~k 243 (265)
T PF02114_consen 240 LPEK 243 (265)
T ss_dssp SS--
T ss_pred CCCc
Confidence 9765
No 5
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.96 E-value=1.9e-28 Score=205.43 Aligned_cols=166 Identities=26% Similarity=0.391 Sum_probs=137.8
Q ss_pred CcHHHHHHHHHHHHHHHHHHhh------hcCCCceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHH
Q 025454 74 DDDRFLEEYRKKRLAEMREATK------ISRFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELA 146 (252)
Q Consensus 74 ~Dd~~l~~yR~kRl~el~~~~~------~~~fG~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA 146 (252)
.|++-|+..|.+||++|++... ..+||.+.+| +..+|.+.++++. -||+|||.|....|+.|+.+|+.||
T Consensus 34 ~d~~dle~lr~qRl~~lkk~~~kr~~~~~~GhG~y~ev~~Ekdf~~~~~kS~---kVVcHFY~~~f~RCKimDkhLe~LA 110 (211)
T KOG1672|consen 34 MDEDDLEVLREQRLEQLKKEQEKRKEWLSKGHGEYEEVASEKDFFEEVKKSE---KVVCHFYRPEFFRCKIMDKHLEILA 110 (211)
T ss_pred CCchhHHHhHHHHHHHHHHHHHHHHHHHHcCCceEEEeccHHHHHHHhhcCc---eEEEEEEcCCCcceehHHHHHHHHH
Confidence 3444556669999999988654 3689999999 5899999998764 6999999999999999999999999
Q ss_pred HHCCCceEEEEeccCCC---CCCCCCcccEEEEEECCeEEEEeecccccC--CCCCHHHHHHHHHhcCCCCCCCCCCCCc
Q 025454 147 RKYPATKFVKIISTDCI---PNYPDRNLPTVLVYNNGAVKANYVGLRSFG--RRCTPEGVALVLCQSDPVLNDGQSGSDP 221 (252)
Q Consensus 147 ~ky~~vkFvkI~~~~~~---~~~~i~~lPTlliy~~G~~v~~~vG~~~~G--~~~~~e~lE~~L~~~g~i~~~~~~~~~~ 221 (252)
++|.+++|++|++..|+ .+++|+.+||+++|+||..+.+++||.++| +.|+.+.||+.|..+|+|..........
T Consensus 111 k~h~eTrFikvnae~~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S~vi~~~~~~s~~~ 190 (211)
T KOG1672|consen 111 KRHVETRFIKVNAEKAPFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKSGVIDYTGELSKPK 190 (211)
T ss_pred HhcccceEEEEecccCceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhccceecccccccCc
Confidence 99999999999999875 899999999999999999999999999996 6899999999999999988776654432
Q ss_pred chHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q 025454 222 SRKTVLEGVRKRLIEKVVAEHEDDDDGSSSD 252 (252)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (252)
... ..+.+.++.+ ..+|||+|
T Consensus 191 ~~~--------~~~~~~ir~~--~~~DSD~d 211 (211)
T KOG1672|consen 191 KVN--------TSIRRSVRSS--AESDSDSD 211 (211)
T ss_pred cch--------hhHHHHhhcC--ccccccCC
Confidence 222 3334455555 44555554
No 6
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-26 Score=193.59 Aligned_cols=155 Identities=27% Similarity=0.495 Sum_probs=138.3
Q ss_pred ccCHHHHhhccCCCCCCcHHHHHHHHHHHHHHHHHHhh-hcCCCceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchh
Q 025454 58 EKTEEELEELEDDPDLDDDRFLEEYRKKRLAEMREATK-ISRFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAEC 135 (252)
Q Consensus 58 ~~~~~el~~led~~~~~Dd~~l~~yR~kRl~el~~~~~-~~~fG~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~C 135 (252)
.++.+|...+-.+ -+|+.+|++||+|||++|++.++ .++||.|+++ ++.+|.+.|.+.-+...++||+|.+..+.|
T Consensus 97 kms~~E~~~m~~~--~~de~~L~~yr~qrm~eMrq~l~~gp~~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gc 174 (273)
T KOG3171|consen 97 KMSIQEYELMHKE--KEDENCLRKYRRQRMQEMRQKLSFGPRYGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGC 174 (273)
T ss_pred cccHHHHHHHhhh--hchHHHHHHHHHHHHHHHHHHhhcCCccceEEEeccchhHHHHHhcccceEEEEEEEecCCCchH
Confidence 4566676666544 57899999999999999988764 6999999999 789999999988677899999999999999
Q ss_pred hhHHHHHHHHHHHCCCceEEEEeccC--CCCCCCCCcccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHhcCCCC
Q 025454 136 GLLMQCLEELARKYPATKFVKIISTD--CIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQSDPVL 212 (252)
Q Consensus 136 k~l~~~l~~LA~ky~~vkFvkI~~~~--~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~g~i~ 212 (252)
.+|+.++.-||+.||-||||+|-++. +..+|...++|||+||++|+++++||.+..- |..|...+|+.||...|.++
T Consensus 175 ealn~~~~cLAAeyP~vKFckikss~~gas~~F~~n~lP~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gllp 254 (273)
T KOG3171|consen 175 EALNSSLTCLAAEYPIVKFCKIKSSNTGASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGLLP 254 (273)
T ss_pred HHHhhhHHHhhccCCceeEEEeeeccccchhhhcccCCceEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCCCc
Confidence 99999999999999999999998875 4589999999999999999999999998764 99999999999999999876
Q ss_pred CC
Q 025454 213 ND 214 (252)
Q Consensus 213 ~~ 214 (252)
-.
T Consensus 255 e~ 256 (273)
T KOG3171|consen 255 ER 256 (273)
T ss_pred cc
Confidence 54
No 7
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.93 E-value=3.3e-25 Score=173.43 Aligned_cols=110 Identities=42% Similarity=0.658 Sum_probs=102.0
Q ss_pred cCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC--CCCCCCCCcccEE
Q 025454 97 SRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD--CIPNYPDRNLPTV 174 (252)
Q Consensus 97 ~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~--~~~~~~i~~lPTl 174 (252)
.+||.|.+|+.++|.+.|.+.+.+.+|||+||++||++|+.|.|.|++||.+|++++|++||+++ ++.+|+|.++||+
T Consensus 1 ~~~g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 1 KGFGEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred CCCceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCCcCCEE
Confidence 37999999999999999988755679999999999999999999999999999999999999874 5688999999999
Q ss_pred EEEECCeEEEEeeccccc-CCCCCHHHHHHHHH
Q 025454 175 LVYNNGAVKANYVGLRSF-GRRCTPEGVALVLC 206 (252)
Q Consensus 175 liy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~ 206 (252)
++|++|+.+.+++|..++ |..++.+.|+++|.
T Consensus 81 ~~f~~G~~v~~~~G~~~~~~~~~~~~~l~~~l~ 113 (113)
T cd02957 81 LVYKNGELIDNIVGFEELGGDDFTTEDLEKFLA 113 (113)
T ss_pred EEEECCEEEEEEecHHHhCCCCCCHHHHHHHhC
Confidence 999999999999999998 88999999999873
No 8
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.92 E-value=2.5e-24 Score=169.11 Aligned_cols=106 Identities=27% Similarity=0.452 Sum_probs=98.2
Q ss_pred CCCceEEcCh-hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---CCCCCCCcccE
Q 025454 98 RFGSVMPISG-SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---IPNYPDRNLPT 173 (252)
Q Consensus 98 ~fG~v~eIs~-~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~~~~~i~~lPT 173 (252)
+||++.+|+. ++|.+.|.+. .+|||+||++||++|+.|.|.|++|+++|++++|++||.+.. +++|+|.++||
T Consensus 2 ~~g~v~~i~~~~~~~~~i~~~---~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt 78 (113)
T cd02989 2 GHGKYREVSDEKEFFEIVKSS---ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPT 78 (113)
T ss_pred CCCCeEEeCCHHHHHHHHhCC---CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCE
Confidence 6999999976 9999999754 489999999999999999999999999999999999999864 58999999999
Q ss_pred EEEEECCeEEEEeeccccc-C-CCCCHHHHHHHHH
Q 025454 174 VLVYNNGAVKANYVGLRSF-G-RRCTPEGVALVLC 206 (252)
Q Consensus 174 lliy~~G~~v~~~vG~~~~-G-~~~~~e~lE~~L~ 206 (252)
+++|++|+.+++++|+.++ | .+++.++||++|+
T Consensus 79 ~l~fk~G~~v~~~~g~~~~~~~~~~~~~~~e~~~~ 113 (113)
T cd02989 79 VILFKNGKTVDRIVGFEELGGKDDFSTETLEKRLA 113 (113)
T ss_pred EEEEECCEEEEEEECccccCCCCCCCHHHHHHHhC
Confidence 9999999999999999999 4 7999999999984
No 9
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=7.4e-21 Score=154.77 Aligned_cols=101 Identities=27% Similarity=0.344 Sum_probs=89.3
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEE
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVL 175 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTll 175 (252)
+.+...+..+|.+.|.++. +||||.|||+||+||+.|.|.|++++..|.+ ++|++||.++ ++..|+|+.+||++
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~--~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSD--VPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred ccccccCHHHHHHHHHccC--CCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEE
Confidence 3455668999999999876 8999999999999999999999999999977 9999999874 57999999999999
Q ss_pred EEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 176 VYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+|+||+.+++++|.. +.+.|+.++.+.
T Consensus 121 vfknGe~~d~~vG~~------~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 121 VFKNGEKVDRFVGAV------PKEQLRSLIKKF 147 (150)
T ss_pred EEECCEEeeeecccC------CHHHHHHHHHHH
Confidence 999999999999975 466777777653
No 10
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.2e-20 Score=142.43 Aligned_cols=97 Identities=25% Similarity=0.408 Sum_probs=79.9
Q ss_pred EcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---CCCCCCCcccEEEEEECC
Q 025454 104 PISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---IPNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 104 eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~~~~~i~~lPTlliy~~G 180 (252)
..+..++.....+. .+++|||+|||+|||||+.|.|.+.+||.+||++.|+++|.+++ +..|+|+++|||++|++|
T Consensus 6 ~~~~~~~~~~~~~~-~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g 84 (106)
T KOG0907|consen 6 TVSDLDLVLSAAEA-GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGG 84 (106)
T ss_pred ehhhHHHHHHHhhC-CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECC
Confidence 33344444444443 24899999999999999999999999999999999999999863 388999999999999999
Q ss_pred eEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 181 AVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 181 ~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+.+.+++|.. ...|+..+..+
T Consensus 85 ~~~~~~vGa~-------~~~l~~~i~~~ 105 (106)
T KOG0907|consen 85 EEVDEVVGAN-------KAELEKKIAKH 105 (106)
T ss_pred EEEEEEecCC-------HHHHHHHHHhc
Confidence 9999999974 45777777653
No 11
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.82 E-value=6.3e-20 Score=144.28 Aligned_cols=85 Identities=15% Similarity=0.131 Sum_probs=75.4
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCC---CCCCCCCcccEEEEEECCe
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDC---IPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~---~~~~~i~~lPTlliy~~G~ 181 (252)
+.++|...+... .+++|||+|||+||++|+.|.|.|++||.+|++ ++|++||+++. +..|+|+++|||++|++|+
T Consensus 1 ~~~~~~~~i~~~-~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 1 SGWAVDQAILSE-EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred CHHHHHHHHhcc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 356788888753 246999999999999999999999999999998 79999999864 5899999999999999999
Q ss_pred EEEEeecccc
Q 025454 182 VKANYVGLRS 191 (252)
Q Consensus 182 ~v~~~vG~~~ 191 (252)
.+++++|..+
T Consensus 80 ~v~~~~G~~~ 89 (114)
T cd02954 80 HMKIDLGTGN 89 (114)
T ss_pred EEEEEcCCCC
Confidence 9999999754
No 12
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.82 E-value=1e-19 Score=140.18 Aligned_cols=96 Identities=14% Similarity=0.134 Sum_probs=81.9
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC------CCCCCCCCcccEEEEEEC
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD------CIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~------~~~~~~i~~lPTlliy~~ 179 (252)
|.++|.+.|.++ ++++|||+|||+||++|+.|.|.|.+|++.|+.+.|++|+.+. +..+|+|.++||+++|++
T Consensus 2 ~~~~~~~~i~~~-~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 2 SVEELDEALKKA-KGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CHHHHHHHHHHc-CCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 467888888765 4689999999999999999999999999999889999999864 346899999999999999
Q ss_pred CeEEEEeecccccCCCCCHHHHHHHHHhcC
Q 025454 180 GAVKANYVGLRSFGRRCTPEGVALVLCQSD 209 (252)
Q Consensus 180 G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g 209 (252)
|+.+.++.|.. +..|...+...|
T Consensus 81 G~~v~~~~G~~-------~~~l~~~~~~~~ 103 (103)
T cd02985 81 GEKIHEEEGIG-------PDELIGDVLYYG 103 (103)
T ss_pred CeEEEEEeCCC-------HHHHHHHHHhcC
Confidence 99999999864 466666655443
No 13
>PHA02278 thioredoxin-like protein
Probab=99.80 E-value=2.7e-19 Score=138.47 Aligned_cols=82 Identities=15% Similarity=0.255 Sum_probs=70.7
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC-CceEEEEeccC-------CCCCCCCCcccEEEEE
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP-ATKFVKIISTD-------CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~-~vkFvkI~~~~-------~~~~~~i~~lPTlliy 177 (252)
+..+|.+.+.+ +.+|||+|||+||++|+.|.|.|++++.++. .+.|++|+.+. +..+|.|+++|||++|
T Consensus 3 ~~~~~~~~i~~---~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 3 SLVDLNTAIRQ---KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CHHHHHHHHhC---CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 45788888853 3699999999999999999999999998854 47899998763 4578999999999999
Q ss_pred ECCeEEEEeeccc
Q 025454 178 NNGAVKANYVGLR 190 (252)
Q Consensus 178 ~~G~~v~~~vG~~ 190 (252)
++|+.+++++|..
T Consensus 80 k~G~~v~~~~G~~ 92 (103)
T PHA02278 80 KDGQLVKKYEDQV 92 (103)
T ss_pred ECCEEEEEEeCCC
Confidence 9999999999953
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.78 E-value=2.2e-18 Score=130.15 Aligned_cols=99 Identities=24% Similarity=0.437 Sum_probs=89.2
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC-CceEEEEeccC---CCCCCCCCcccEEEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP-ATKFVKIISTD---CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~-~vkFvkI~~~~---~~~~~~i~~lPTlliy 177 (252)
|..+|.++|.+.+.+. +.++||.||++||++|+.+.|.|.++++.++ .+.|++||.+. +...|+|.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~--~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINES--DKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTT--SSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHcc--CCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 5678999999999873 3699999999999999999999999999999 79999999975 3589999999999999
Q ss_pred ECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 178 NNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 178 ~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
++|+.+.++.|. .+.+.|..+|.++
T Consensus 79 ~~g~~~~~~~g~------~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVKRYNGP------RNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEEEEESS------SSHHHHHHHHHHH
T ss_pred ECCcEEEEEECC------CCHHHHHHHHHcC
Confidence 999999999885 4689999999764
No 15
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.77 E-value=2.7e-18 Score=136.40 Aligned_cols=100 Identities=12% Similarity=0.105 Sum_probs=87.5
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCch--hh--hHHHHHHHHHHHC--C-CceEEEEeccC---CCCCCCC
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAE--CG--LLMQCLEELARKY--P-ATKFVKIISTD---CIPNYPD 168 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~--Ck--~l~~~l~~LA~ky--~-~vkFvkI~~~~---~~~~~~i 168 (252)
+-.|..++.++|.+.|.+++ .+||+.||++||++ |+ .|.|++.++|+++ . +++|++||+++ ++.+|+|
T Consensus 8 ~~~v~~lt~~nF~~~v~~~~--~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 8 KDRVIDLNEKNYKQVLKKYD--VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred CcceeeCChhhHHHHHHhCC--ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCC
Confidence 34688999999999999876 68999999999987 99 9999999999998 5 49999999985 4689999
Q ss_pred CcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 169 RNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 169 ~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+++|||++|++|+.+. ++|.. +.+.|..+|.+
T Consensus 86 ~~iPTl~lfk~G~~v~-~~G~~------~~~~l~~~l~~ 117 (120)
T cd03065 86 DEEDSIYVFKDDEVIE-YDGEF------AADTLVEFLLD 117 (120)
T ss_pred ccccEEEEEECCEEEE-eeCCC------CHHHHHHHHHH
Confidence 9999999999999887 88863 56888888875
No 16
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.76 E-value=5.5e-18 Score=133.28 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=77.1
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CC-CCCCCCcccEE
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CI-PNYPDRNLPTV 174 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~-~~~~i~~lPTl 174 (252)
+.|.+++..+|.+.+.-...+.+|||.|||+||++|+.|.|.|+++|++|.+ ++|++||++. ++ .+|+|.++|||
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PTl 88 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPVI 88 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCEE
Confidence 5699999999998743122346999999999999999999999999999986 8999999874 34 58999999999
Q ss_pred EEEECCeEEEEeecc
Q 025454 175 LVYNNGAVKANYVGL 189 (252)
Q Consensus 175 liy~~G~~v~~~vG~ 189 (252)
++|++|+...++.|.
T Consensus 89 ~lf~~g~~~~~y~G~ 103 (113)
T cd03006 89 HLYYRSRGPIEYKGP 103 (113)
T ss_pred EEEECCccceEEeCC
Confidence 999999988777775
No 17
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=2.4e-18 Score=153.65 Aligned_cols=105 Identities=22% Similarity=0.369 Sum_probs=96.1
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlli 176 (252)
.|.+||..+|.+.|.+++..+||||.||+|||++|+.+.|.|++|+..|.+ ++++|||++. ++..|+|+++||+++
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~a 103 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYA 103 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEE
Confidence 499999999999999999888999999999999999999999999999987 9999999985 458999999999999
Q ss_pred EECCeEEEEeecccccCCCCCHHHHHHHHHhcCCC
Q 025454 177 YNNGAVKANYVGLRSFGRRCTPEGVALVLCQSDPV 211 (252)
Q Consensus 177 y~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~i 211 (252)
|++|+.|+.|.|.. ..+.|..||.+++..
T Consensus 104 f~dGqpVdgF~G~q------Pesqlr~~ld~~~~~ 132 (304)
T COG3118 104 FKDGQPVDGFQGAQ------PESQLRQFLDKVLPA 132 (304)
T ss_pred eeCCcCccccCCCC------cHHHHHHHHHHhcCh
Confidence 99999999999875 367899999987644
No 18
>PRK09381 trxA thioredoxin; Provisional
Probab=99.75 E-value=1.7e-17 Score=128.13 Aligned_cols=100 Identities=23% Similarity=0.410 Sum_probs=87.2
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCC---CCCCCCCcccEEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDC---IPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~---~~~~~i~~lPTlli 176 (252)
.|.+++..+|.+.|.+.+ ++|||+||++||++|+.+.|.|++++.+|++ ++|+.++.+.. ...|+++++||+++
T Consensus 4 ~v~~~~~~~~~~~v~~~~--~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 81 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKAD--GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL 81 (109)
T ss_pred cceeeChhhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEE
Confidence 578899999999987653 6999999999999999999999999999965 89999998753 36799999999999
Q ss_pred EECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 177 YNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 177 y~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
|++|+.+.++.|. .+.+.|+.+|..+
T Consensus 82 ~~~G~~~~~~~G~------~~~~~l~~~i~~~ 107 (109)
T PRK09381 82 FKNGEVAATKVGA------LSKGQLKEFLDAN 107 (109)
T ss_pred EeCCeEEEEecCC------CCHHHHHHHHHHh
Confidence 9999999999886 3467888888764
No 19
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=5.7e-18 Score=147.45 Aligned_cols=100 Identities=27% Similarity=0.433 Sum_probs=87.8
Q ss_pred ceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---CCCCCCCcccEEEE
Q 025454 101 SVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---IPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~~~~~i~~lPTlli 176 (252)
.|+.| +.++|..++..++ ++.|+|.|+|.||+||+.+.|+|+.||.+||...|+|||.++| +..++|..+|||++
T Consensus 2 ~Vi~v~~d~df~~~ls~ag-~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFif 80 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAG-GKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIF 80 (288)
T ss_pred CeEEecCcHHHHHhhhccC-ceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEE
Confidence 36777 6799999998774 6899999999999999999999999999999999999999877 57899999999999
Q ss_pred EECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 177 YNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 177 y~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
|+||..++++.|.. ...||..++++
T Consensus 81 f~ng~kid~~qGAd-------~~gLe~kv~~~ 105 (288)
T KOG0908|consen 81 FRNGVKIDQIQGAD-------ASGLEEKVAKY 105 (288)
T ss_pred EecCeEeeeecCCC-------HHHHHHHHHHH
Confidence 99999999999874 45566666554
No 20
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.75 E-value=5.3e-18 Score=129.75 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=81.5
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlli 176 (252)
.|.+++..+|.+.|.+.+ ++|||.||++||++|+.|.|.|.+++.+|.+ +.|++||++. +..+|+|+++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~--~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRK--EPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCC--CeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 477899999999987654 5999999999999999999999999999865 8999999875 357899999999999
Q ss_pred EECC-eEEEEeecccccCCCCCHHHHHHH
Q 025454 177 YNNG-AVKANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 177 y~~G-~~v~~~vG~~~~G~~~~~e~lE~~ 204 (252)
|++| +.+.++.|.. .+.+.|..|
T Consensus 80 ~~~g~~~~~~~~G~~-----~~~~~l~~~ 103 (104)
T cd03004 80 YPGNASKYHSYNGWH-----RDADSILEF 103 (104)
T ss_pred EcCCCCCceEccCCC-----CCHHHHHhh
Confidence 9998 8888877752 125555544
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.75 E-value=8.9e-18 Score=131.05 Aligned_cols=100 Identities=11% Similarity=0.086 Sum_probs=84.6
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---CCCCCCCCcccEEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD---CIPNYPDRNLPTVLV 176 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~---~~~~~~i~~lPTlli 176 (252)
-+.++.++|.+.+....++++|||+||++||++|+.+.|.|.+++++++ .+.|++|+.+. +...|+|+++||+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 6 KYSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred hheeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 3456889999888755466899999999999999999999999999996 48999999764 458899999999999
Q ss_pred EECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 177 YNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 177 y~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
|++|+.+..+.|. .+.+.|..+|.+
T Consensus 86 ~~~g~~~~~~~G~------~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSS------FTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCC------CCHHHHHHHHhc
Confidence 9999999888885 346777777754
No 22
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.75 E-value=1.3e-17 Score=128.11 Aligned_cols=92 Identities=17% Similarity=0.308 Sum_probs=78.3
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc--CCCCCCCCCcccEEEEEECCe
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST--DCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~--~~~~~~~i~~lPTlliy~~G~ 181 (252)
+.++|...+.+ +++|||+|||+||++|+.+.|.|..++..|++ ++|++++.+ .++..|+|+++|||++|++|+
T Consensus 6 ~~~~~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 6 NQEEWEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred CHHHHHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 67888887753 36999999999999999999999999999963 789999887 446899999999999999999
Q ss_pred EEEEeecccccCCCCCHHHHHHHHHh
Q 025454 182 VKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 182 ~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.+.++.|. +...|..+|.+
T Consensus 83 ~~~~~~G~-------~~~~~~~~i~~ 101 (102)
T cd02948 83 LVAVIRGA-------NAPLLNKTITE 101 (102)
T ss_pred EEEEEecC-------ChHHHHHHHhh
Confidence 99999985 34666666653
No 23
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=1.8e-17 Score=136.77 Aligned_cols=106 Identities=19% Similarity=0.191 Sum_probs=88.6
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---CCCCCCCCc---
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD---CIPNYPDRN--- 170 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~---~~~~~~i~~--- 170 (252)
.+.+.+++.++|.+.+... ++++|||+||++||++|+.|.|.|++++.+|. +++|++||.++ +...|+|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~-~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERD-KRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhc-CCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCC
Confidence 4578899999999888654 34699999999999999999999999999986 49999999865 346788877
Q ss_pred ---ccEEEEEECCeEEEEeeccccc-----CCCCCHHHHHHHH
Q 025454 171 ---LPTVLVYNNGAVKANYVGLRSF-----GRRCTPEGVALVL 205 (252)
Q Consensus 171 ---lPTlliy~~G~~v~~~vG~~~~-----G~~~~~e~lE~~L 205 (252)
+||+++|++|+.+.++.|...- |..+|.+++.+..
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G~~~~~~~~~~~~~~~~~~~~~~ 148 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPYYNDSKGRAVPFTFSKENVIRHF 148 (152)
T ss_pred cCCCCEEEEEECCEEEEEEeccccCccccccccccHHHHHHhc
Confidence 9999999999999999996543 3567777776543
No 24
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.74 E-value=1.3e-17 Score=127.23 Aligned_cols=86 Identities=17% Similarity=0.283 Sum_probs=75.7
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlli 176 (252)
.|++++..+|...+.+. ++|||.||++||++|+.|.|.|.++|+++.+ ++|++||+++ +..+|+|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~---~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSG---EIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCC---CeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 47889999999988533 6899999999999999999999999999976 8999999875 357899999999999
Q ss_pred EECCeEEEEeecc
Q 025454 177 YNNGAVKANYVGL 189 (252)
Q Consensus 177 y~~G~~v~~~vG~ 189 (252)
|++|+.+.++.|.
T Consensus 79 ~~~g~~~~~~~G~ 91 (101)
T cd03003 79 FPSGMNPEKYYGD 91 (101)
T ss_pred EcCCCCcccCCCC
Confidence 9999887777664
No 25
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.74 E-value=2.1e-17 Score=124.54 Aligned_cols=91 Identities=22% Similarity=0.321 Sum_probs=77.5
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEEECCeEE
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v 183 (252)
++|.+.|.++ ++++|||+||++||++|+.+.|.|.+++..|++ +.|++||.+. +..+|+|.++||+++|++|+.+
T Consensus 1 ~~f~~~i~~~-~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 79 (96)
T cd02956 1 QNFQQVLQES-TQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQPV 79 (96)
T ss_pred CChHHHHHhc-CCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEEe
Confidence 3677888755 357999999999999999999999999999975 8899999875 3578999999999999999999
Q ss_pred EEeecccccCCCCCHHHHHHHH
Q 025454 184 ANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 184 ~~~vG~~~~G~~~~~e~lE~~L 205 (252)
.++.|. .+.+.|..+|
T Consensus 80 ~~~~g~------~~~~~l~~~l 95 (96)
T cd02956 80 DGFQGA------QPEEQLRQML 95 (96)
T ss_pred eeecCC------CCHHHHHHHh
Confidence 888885 3467777665
No 26
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.73 E-value=3.8e-17 Score=123.03 Aligned_cols=92 Identities=21% Similarity=0.398 Sum_probs=79.1
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHH-CCCceEEEEeccCC---CCCCCCCcccEEEEEECCe
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARK-YPATKFVKIISTDC---IPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~k-y~~vkFvkI~~~~~---~~~~~i~~lPTlliy~~G~ 181 (252)
|.++|.+.+..+. +++|||+||++||++|+.|.+.|.+++.+ ++.++|++|+.+.. ..+|++.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~-~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 1 SEEEFEELLKSDA-SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred CHHHHHHHHhhCC-CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 4578888888774 57999999999999999999999999999 67799999998754 4889999999999999999
Q ss_pred EEEEeecccccCCCCCHHHHHHHH
Q 025454 182 VKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 182 ~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
.+.++.|.. ...|..++
T Consensus 80 ~~~~~~g~~-------~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSGAD-------PKELAKKV 96 (97)
T ss_pred EEEEEeCCC-------HHHHHHhh
Confidence 999999863 45555543
No 27
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.72 E-value=2.6e-17 Score=129.03 Aligned_cols=77 Identities=12% Similarity=0.167 Sum_probs=70.0
Q ss_pred hhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCC---CCCCCCCcccEEEEEECCeE
Q 025454 107 GSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDC---IPNYPDRNLPTVLVYNNGAV 182 (252)
Q Consensus 107 ~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~---~~~~~i~~lPTlliy~~G~~ 182 (252)
.++|.+.|.++ .+++|||+|+|+||++|+.|+|.|.+||.+|++ +.|++||.++. ++.|+|+.+||+++|++|+-
T Consensus 2 ~~~~d~~i~~~-~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 2 KKEVDQAIKST-AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 46788888877 468999999999999999999999999999998 99999999865 48999999999999999987
Q ss_pred EE
Q 025454 183 KA 184 (252)
Q Consensus 183 v~ 184 (252)
+.
T Consensus 81 ~~ 82 (114)
T cd02986 81 MK 82 (114)
T ss_pred EE
Confidence 65
No 28
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.72 E-value=3.1e-17 Score=125.93 Aligned_cols=89 Identities=17% Similarity=0.300 Sum_probs=73.5
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc-C---CCCCCCCCcccEEEEEECCeEE
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST-D---CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~-~---~~~~~~i~~lPTlliy~~G~~v 183 (252)
..+.+.+... +|++|||+|||+||++|+.|.|.|++++++|+++.|++|+.+ . +...|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~-~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~~ 84 (100)
T cd02999 7 NIALDLMAFN-REDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-PR 84 (100)
T ss_pred hHHHHHHHhc-CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-ce
Confidence 3455666544 678999999999999999999999999999999999999876 3 3478999999999999999 77
Q ss_pred EEeecccccCCCCCHHHHHHH
Q 025454 184 ANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 184 ~~~vG~~~~G~~~~~e~lE~~ 204 (252)
.++.|.. +.+.|..|
T Consensus 85 ~~~~G~~------~~~~l~~f 99 (100)
T cd02999 85 VRYNGTR------TLDSLAAF 99 (100)
T ss_pred eEecCCC------CHHHHHhh
Confidence 8888753 44555444
No 29
>PTZ00051 thioredoxin; Provisional
Probab=99.72 E-value=4.2e-17 Score=123.12 Aligned_cols=86 Identities=23% Similarity=0.397 Sum_probs=74.1
Q ss_pred eEEcC-hhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEE
Q 025454 102 VMPIS-GSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 102 v~eIs-~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy 177 (252)
|.+|+ .++|...+. . +++|+|+||++||++|+.+.+.|..+++++++++|+.|+.+. +..+|++.++||+++|
T Consensus 2 v~~i~~~~~~~~~~~-~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 2 VHIVTSQAEFESTLS-Q--NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred eEEecCHHHHHHHHh-c--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 56674 456666554 3 369999999999999999999999999999999999999874 4589999999999999
Q ss_pred ECCeEEEEeeccc
Q 025454 178 NNGAVKANYVGLR 190 (252)
Q Consensus 178 ~~G~~v~~~vG~~ 190 (252)
++|+.+.++.|..
T Consensus 79 ~~g~~~~~~~G~~ 91 (98)
T PTZ00051 79 KNGSVVDTLLGAN 91 (98)
T ss_pred eCCeEEEEEeCCC
Confidence 9999999999963
No 30
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.72 E-value=6.7e-17 Score=131.72 Aligned_cols=104 Identities=13% Similarity=0.053 Sum_probs=82.4
Q ss_pred EEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCC---CCCCCCCcccEEE-E
Q 025454 103 MPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDC---IPNYPDRNLPTVL-V 176 (252)
Q Consensus 103 ~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~---~~~~~i~~lPTll-i 176 (252)
.+| +..+|.+.|..+ .+++|||.|||+||++|+.|.|.|.++|+++++ +.|++||.++. +..|+|++.||++ +
T Consensus 6 ~~l~s~~e~d~~I~~~-~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 6 PHLHSGWAVDQAILAE-EERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred hhhCCHHHHHHHHHhc-CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 344 678999999755 457999999999999999999999999999998 88899999864 5899999776555 9
Q ss_pred EECCe-EEEEeecccc-c-CCCCCHHHHHHHHHh
Q 025454 177 YNNGA-VKANYVGLRS-F-GRRCTPEGVALVLCQ 207 (252)
Q Consensus 177 y~~G~-~v~~~vG~~~-~-G~~~~~e~lE~~L~~ 207 (252)
|++|+ .+++..|... + +.-.+.++|...+..
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVET 118 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHH
Confidence 99999 9999998432 1 222355666655543
No 31
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.70 E-value=4.4e-17 Score=127.51 Aligned_cols=86 Identities=19% Similarity=0.249 Sum_probs=76.5
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCC--CchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDG--FAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVL 175 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~w--c~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTll 175 (252)
+-.++..+|.+.+ .+ +..+||.||++| ||+|+.|.|.|.++|++|++ ++|++||.++ ++.+|+|+++|||+
T Consensus 12 ~~~~~~~~~~~~~-~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli 88 (111)
T cd02965 12 WPRVDAATLDDWL-AA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALL 88 (111)
T ss_pred CcccccccHHHHH-hC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEE
Confidence 5578899999766 33 358999999997 99999999999999999988 8899999875 46899999999999
Q ss_pred EEECCeEEEEeeccc
Q 025454 176 VYNNGAVKANYVGLR 190 (252)
Q Consensus 176 iy~~G~~v~~~vG~~ 190 (252)
+|++|+.+++++|..
T Consensus 89 ~fkdGk~v~~~~G~~ 103 (111)
T cd02965 89 FFRDGRYVGVLAGIR 103 (111)
T ss_pred EEECCEEEEEEeCcc
Confidence 999999999999974
No 32
>PRK10996 thioredoxin 2; Provisional
Probab=99.70 E-value=2.1e-16 Score=128.29 Aligned_cols=101 Identities=20% Similarity=0.343 Sum_probs=86.9
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEE
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTV 174 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTl 174 (252)
-|.+..++..+|.+.+.+ +++|+|.||++||++|+.|.|.|..++.++.. +.|+++|.+. +...|+|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i~~---~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQD---DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHhC---CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 346778899999987753 36999999999999999999999999998864 9999999874 3589999999999
Q ss_pred EEEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 175 LVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 175 liy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
++|++|+.+.++.|. .+.+.|+.+|.+.
T Consensus 111 ii~~~G~~v~~~~G~------~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNGQVVDMLNGA------VPKAPFDSWLNEA 138 (139)
T ss_pred EEEECCEEEEEEcCC------CCHHHHHHHHHHh
Confidence 999999999999886 4578899998763
No 33
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.70 E-value=1.1e-16 Score=121.17 Aligned_cols=93 Identities=22% Similarity=0.415 Sum_probs=79.1
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC----CceEEEEeccC---CCCCCCCCcccEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP----ATKFVKIISTD---CIPNYPDRNLPTV 174 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~----~vkFvkI~~~~---~~~~~~i~~lPTl 174 (252)
+++++.++|...+.+. +|+|.||++||++|+.+.|.|.+++.++. .++|++||++. +...|+|.++||+
T Consensus 2 ~~~l~~~~f~~~~~~~----~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 77 (102)
T cd03005 2 VLELTEDNFDHHIAEG----NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTL 77 (102)
T ss_pred eeECCHHHHHHHhhcC----CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEE
Confidence 6788999999999642 49999999999999999999999999885 48999999864 4578999999999
Q ss_pred EEEECCeEEEEeecccccCCCCCHHHHHHH
Q 025454 175 LVYNNGAVKANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 175 liy~~G~~v~~~vG~~~~G~~~~~e~lE~~ 204 (252)
++|++|..+.++.|.. +.+.|..+
T Consensus 78 ~~~~~g~~~~~~~G~~------~~~~l~~~ 101 (102)
T cd03005 78 LLFKDGEKVDKYKGTR------DLDSLKEF 101 (102)
T ss_pred EEEeCCCeeeEeeCCC------CHHHHHhh
Confidence 9999999888888864 45566554
No 34
>PTZ00062 glutaredoxin; Provisional
Probab=99.69 E-value=2.3e-16 Score=135.98 Aligned_cols=90 Identities=12% Similarity=0.141 Sum_probs=78.0
Q ss_pred cChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEEEEECCeEEE
Q 025454 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 105 Is~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~v~ 184 (252)
++.++|.+.+.... ..+|++|+|+||++|+.|.|+|.+|++.||.++|++|+++ |+|.++|||++|++|++++
T Consensus 4 ~~~ee~~~~i~~~~--g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-----~~V~~vPtfv~~~~g~~i~ 76 (204)
T PTZ00062 4 IKKEEKDKLIESNT--GKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-----DANNEYGVFEFYQNSQLIN 76 (204)
T ss_pred CCHHHHHHHHhcCC--CcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-----cCcccceEEEEEECCEEEe
Confidence 46788888886432 3689999999999999999999999999999999999988 9999999999999999999
Q ss_pred EeecccccCCCCCHHHHHHHHHhc
Q 025454 185 NYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 185 ~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+++|.. +..|...+.++
T Consensus 77 r~~G~~-------~~~~~~~~~~~ 93 (204)
T PTZ00062 77 SLEGCN-------TSTLVSFIRGW 93 (204)
T ss_pred eeeCCC-------HHHHHHHHHHH
Confidence 999863 56666666654
No 35
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.69 E-value=2.9e-16 Score=121.26 Aligned_cols=86 Identities=22% Similarity=0.330 Sum_probs=72.0
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC----C---CceEEEEeccC---CCCCCCCCc
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY----P---ATKFVKIISTD---CIPNYPDRN 170 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky----~---~vkFvkI~~~~---~~~~~~i~~ 170 (252)
.|.+++.++|.+.+... .+|||+||++||++|+.+.|.|++++..+ + .++|++||++. +..+|+|++
T Consensus 2 ~v~~l~~~~f~~~i~~~---~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~ 78 (108)
T cd02996 2 EIVSLTSGNIDDILQSA---ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINK 78 (108)
T ss_pred ceEEcCHhhHHHHHhcC---CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCc
Confidence 57899999999987543 58999999999999999999999999864 3 38999999874 458899999
Q ss_pred ccEEEEEECCeEE-EEeecc
Q 025454 171 LPTVLVYNNGAVK-ANYVGL 189 (252)
Q Consensus 171 lPTlliy~~G~~v-~~~vG~ 189 (252)
+||+++|++|+.. ..+.|.
T Consensus 79 ~Ptl~~~~~g~~~~~~~~g~ 98 (108)
T cd02996 79 YPTLKLFRNGMMMKREYRGQ 98 (108)
T ss_pred CCEEEEEeCCcCcceecCCC
Confidence 9999999999843 555553
No 36
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.68 E-value=6.7e-16 Score=122.89 Aligned_cols=96 Identities=9% Similarity=0.081 Sum_probs=78.8
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-----CC---------CCC-
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-----CI---------PNY- 166 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-----~~---------~~~- 166 (252)
+..|+..+|.+.+.+. ..+||.||++|||+|+.|.|.|.+++++ ..++|+.||.+. .. ..|
T Consensus 8 ~~~it~~~~~~~i~~~---~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~ 83 (122)
T TIGR01295 8 LEVTTVVRALEALDKK---ETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFG 83 (122)
T ss_pred ceecCHHHHHHHHHcC---CcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcC
Confidence 5678999999999754 4799999999999999999999999998 446788887752 22 234
Q ss_pred ---CCCcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 167 ---PDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 167 ---~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++.++|||++|++|+.+++++|. ..+.++|+.+|.
T Consensus 84 i~~~i~~~PT~v~~k~Gk~v~~~~G~-----~~~~~~l~~~~~ 121 (122)
T TIGR01295 84 IPTSFMGTPTFVHITDGKQVSVRCGS-----STTAQELQDIAA 121 (122)
T ss_pred CcccCCCCCEEEEEeCCeEEEEEeCC-----CCCHHHHHHHhh
Confidence 56679999999999999999874 457899998875
No 37
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.67 E-value=5.2e-16 Score=118.04 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=77.5
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---CCCCCCCCcccEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD---CIPNYPDRNLPTVL 175 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~---~~~~~~i~~lPTll 175 (252)
.|.+|+.++|.+.+. . . +||.|||+||++|+.+.|.|.+++..+. .+.|+++|+++ +..+|+|.++||++
T Consensus 2 ~v~~l~~~~f~~~~~-~---~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~ 76 (101)
T cd02994 2 NVVELTDSNWTLVLE-G---E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIY 76 (101)
T ss_pred ceEEcChhhHHHHhC-C---C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEE
Confidence 478899999997662 2 2 6899999999999999999999999875 48999999865 34789999999999
Q ss_pred EEECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 176 VYNNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
+|++|+. .++.|. .+.+.|..+|.
T Consensus 77 ~~~~g~~-~~~~G~------~~~~~l~~~i~ 100 (101)
T cd02994 77 HAKDGVF-RRYQGP------RDKEDLISFIE 100 (101)
T ss_pred EeCCCCE-EEecCC------CCHHHHHHHHh
Confidence 9999984 666664 35677777764
No 38
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.66 E-value=4.1e-16 Score=119.77 Aligned_cols=100 Identities=13% Similarity=0.217 Sum_probs=78.8
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC-----CCCCCCCCcccEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD-----CIPNYPDRNLPTVL 175 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~-----~~~~~~i~~lPTll 175 (252)
|++++..+|.+.|.+.+ +++||.||++||++|+.+.|.|.++++.+.+ +.|+.++.+. +...|+|+++||++
T Consensus 2 v~~l~~~~~~~~i~~~~--~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTN--YTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCC--CeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 67899999999998654 6899999999999999999999999999875 8899998764 34789999999999
Q ss_pred EEECCeEEEEeeccccc-CCCCCHHHHHHHH
Q 025454 176 VYNNGAVKANYVGLRSF-GRRCTPEGVALVL 205 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L 205 (252)
+|.+|..+..... ..+ | ..+.+.|..|+
T Consensus 80 ~~~~~~~~~~~~~-~~~~G-~~~~~~l~~fi 108 (109)
T cd03002 80 VFRPPKKASKHAV-EDYNG-ERSAKAIVDFV 108 (109)
T ss_pred EEeCCCccccccc-ccccC-ccCHHHHHHHh
Confidence 9999974321111 122 3 34566666665
No 39
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.66 E-value=1.1e-15 Score=114.65 Aligned_cols=95 Identities=24% Similarity=0.442 Sum_probs=82.0
Q ss_pred cChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEEECC
Q 025454 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 105 Is~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy~~G 180 (252)
|+.++|.+.+.+.+ ++|+|+||++||+.|+.+.+.|..+++.+++ ++|++++.+. +...|++.++||+++|++|
T Consensus 1 i~~~~~~~~~~~~~--~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSD--KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcC--CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 46778888887643 6899999999999999999999999999985 9999999874 3478999999999999999
Q ss_pred eEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 181 AVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 181 ~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+.+.++.|.. +.+.|..+|.+
T Consensus 79 ~~~~~~~g~~------~~~~l~~~l~~ 99 (101)
T TIGR01068 79 KEVDRSVGAL------PKAALKQLINK 99 (101)
T ss_pred cEeeeecCCC------CHHHHHHHHHh
Confidence 9988888763 56888888875
No 40
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.64 E-value=1.9e-15 Score=114.68 Aligned_cols=95 Identities=20% Similarity=0.335 Sum_probs=78.4
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC---CceEEEEeccC--C---CCCCCCCccc
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP---ATKFVKIISTD--C---IPNYPDRNLP 172 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~---~vkFvkI~~~~--~---~~~~~i~~lP 172 (252)
.|.+++..+|...+.+. .+++|.||++||++|+.+.|.+..++..++ .+.|++++++. . ...|+|+++|
T Consensus 1 ~~~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~P 77 (104)
T cd02997 1 DVVHLTDEDFRKFLKKE---KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFP 77 (104)
T ss_pred CeEEechHhHHHHHhhC---CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCcccc
Confidence 36788999999888654 489999999999999999999999999875 37899998865 2 3789999999
Q ss_pred EEEEEECCeEEEEeecccccCCCCCHHHHHHH
Q 025454 173 TVLVYNNGAVKANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~ 204 (252)
|+++|++|+.+.++.|.. +.+.|..|
T Consensus 78 t~~~~~~g~~~~~~~g~~------~~~~l~~~ 103 (104)
T cd02997 78 TFKYFENGKFVEKYEGER------TAEDIIEF 103 (104)
T ss_pred EEEEEeCCCeeEEeCCCC------CHHHHHhh
Confidence 999999999888877753 35555444
No 41
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.64 E-value=1.3e-15 Score=115.41 Aligned_cols=85 Identities=26% Similarity=0.360 Sum_probs=72.7
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC---ceEEEEeccC--CCCCCCCCcccEEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA---TKFVKIISTD--CIPNYPDRNLPTVLV 176 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~---vkFvkI~~~~--~~~~~~i~~lPTlli 176 (252)
|..++.++|.+.+.+.+ ++|+|.||++||++|+.|.|.|.++++.+.+ +.|+++|++. +...+++.++||+++
T Consensus 2 v~~l~~~~f~~~i~~~~--~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~ 79 (104)
T cd02995 2 VKVVVGKNFDEVVLDSD--KDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILF 79 (104)
T ss_pred eEEEchhhhHHHHhCCC--CcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEE
Confidence 67899999999998764 6899999999999999999999999998865 8999999753 557788999999999
Q ss_pred EECCe--EEEEeec
Q 025454 177 YNNGA--VKANYVG 188 (252)
Q Consensus 177 y~~G~--~v~~~vG 188 (252)
|++|. ...++.|
T Consensus 80 ~~~~~~~~~~~~~g 93 (104)
T cd02995 80 FPAGDKSNPIKYEG 93 (104)
T ss_pred EcCCCcCCceEccC
Confidence 99997 3444444
No 42
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.61 E-value=3e-15 Score=116.10 Aligned_cols=99 Identities=17% Similarity=0.277 Sum_probs=76.9
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEeccC----CC-CCCCCCcccE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIISTD----CI-PNYPDRNLPT 173 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~~----~~-~~~~i~~lPT 173 (252)
.|.+++.++|...+.....+++|+|.||++||++|+.|.|.|.+++..|.+ +.|++|+++. .. ..|+++.+||
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pt 81 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPT 81 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCE
Confidence 588999999998886444557999999999999999999999999999964 8899998764 12 3599999999
Q ss_pred EEEEECCe-EEEEeecccccCCCCCHHHHHHH
Q 025454 174 VLVYNNGA-VKANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 174 lliy~~G~-~v~~~vG~~~~G~~~~~e~lE~~ 204 (252)
+++|.+|. ....+. |...+.+.|..|
T Consensus 82 i~~f~~~~~~~~~y~-----g~~~~~~~l~~f 108 (109)
T cd02993 82 ILFFPKNSRQPIKYP-----SEQRDVDSLLMF 108 (109)
T ss_pred EEEEcCCCCCceecc-----CCCCCHHHHHhh
Confidence 99998874 232332 333455666554
No 43
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.61 E-value=6e-15 Score=111.84 Aligned_cols=96 Identities=20% Similarity=0.286 Sum_probs=77.0
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy 177 (252)
|.+++..+|.+.+.+.. .+|+|.||++||++|+.+.|.|..+++++++ +.|++++.+. +..+|+|+++||+++|
T Consensus 2 v~~l~~~~~~~~i~~~~--~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSD--DVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCC--CcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 67899999999997654 5799999999999999999999999999865 8999999864 3489999999999999
Q ss_pred ECC-eEEEEeecccccCCCCCHHHHHHHH
Q 025454 178 NNG-AVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 178 ~~G-~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
.+| .....+.| . .+.+.|..|+
T Consensus 80 ~~~~~~~~~~~g-----~-~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKNSPQDYQG-----G-RTAKAIVSAA 102 (103)
T ss_pred CCCCcceeecCC-----C-CCHHHHHHHh
Confidence 999 33333333 2 4455565443
No 44
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.61 E-value=4.2e-15 Score=116.68 Aligned_cols=101 Identities=16% Similarity=0.228 Sum_probs=78.2
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC----CceEEEEeccC-----CCCCCCCCc
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP----ATKFVKIISTD-----CIPNYPDRN 170 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~----~vkFvkI~~~~-----~~~~~~i~~ 170 (252)
+.|++++..+|...|.++. ++|||.||++||++|+.|.|.|++++.++. .++|+++|+.. ....|++++
T Consensus 1 ~~v~~l~~~~f~~~i~~~~--~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~ 78 (114)
T cd02992 1 DPVIVLDAASFNSALLGSP--SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTG 78 (114)
T ss_pred CCeEECCHHhHHHHHhcCC--CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCC
Confidence 4588999999999998764 699999999999999999999999999764 28899998632 347899999
Q ss_pred ccEEEEEECCeEEEEeecccccCCCCCHHHHHH
Q 025454 171 LPTVLVYNNGAVKANYVGLRSFGRRCTPEGVAL 203 (252)
Q Consensus 171 lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~ 203 (252)
+||+++|++|. .....|..--|.-...+.+..
T Consensus 79 ~Pt~~lf~~~~-~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 79 YPTLRYFPPFS-KEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCEEEEECCCC-ccCCCCCcccCCccCHHHHHH
Confidence 99999999998 433334322254334444443
No 45
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.60 E-value=5.2e-15 Score=120.63 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=74.2
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC-----CCCCCCCCcccEEEEE-ECC
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD-----CIPNYPDRNLPTVLVY-NNG 180 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~-----~~~~~~i~~lPTlliy-~~G 180 (252)
.+|...+. .+++|||+||++||++|+.|.|.|.+++.+|.. +.|+.|+.+. ....|+|.++||++|| ++|
T Consensus 11 ~~~~~a~~---~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVALS---NGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHHh---CCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 44555553 346999999999999999999999999999975 7899887753 3478999999999999 489
Q ss_pred eEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 181 AVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 181 ~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+++.++.|.. ..+.|..+|.+
T Consensus 88 ~~v~~~~G~~------~~~~l~~~l~~ 108 (142)
T cd02950 88 NEEGQSIGLQ------PKQVLAQNLDA 108 (142)
T ss_pred CEEEEEeCCC------CHHHHHHHHHH
Confidence 9999999864 35667776665
No 46
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.59 E-value=1.1e-14 Score=127.41 Aligned_cols=102 Identities=15% Similarity=0.222 Sum_probs=84.5
Q ss_pred CceEEcChhhHHHHHHcCC--CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccE
Q 025454 100 GSVMPISGSDFVREVSQAP--PDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPT 173 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~--~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPT 173 (252)
..|.+++..+|.+.+.... .+.+++|.||++||++|+.|.|.|+++++.|++ +.|+++|++. +..+|+|.++||
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PT 109 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPT 109 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCE
Confidence 3589999999999886431 236899999999999999999999999999986 8899998864 458899999999
Q ss_pred EEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 174 VLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 174 lliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+++|++|+.+....|. .+.+.|..++.+
T Consensus 110 l~~f~~G~~v~~~~G~------~s~e~L~~fi~~ 137 (224)
T PTZ00443 110 LLLFDKGKMYQYEGGD------RSTEKLAAFALG 137 (224)
T ss_pred EEEEECCEEEEeeCCC------CCHHHHHHHHHH
Confidence 9999999987765553 456777776654
No 47
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.6e-15 Score=144.67 Aligned_cols=110 Identities=24% Similarity=0.361 Sum_probs=92.5
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC----CCceEEEEecc---CCCCCCCCCccc
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY----PATKFVKIIST---DCIPNYPDRNLP 172 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky----~~vkFvkI~~~---~~~~~~~i~~lP 172 (252)
..|.+++.++|...|..++ +|+|.||||||++|+.+.|.+.+.|... +.++.++||++ +++.+|.|+++|
T Consensus 25 ~~Vl~Lt~dnf~~~i~~~~---~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 25 EDVLVLTKDNFKETINGHE---FVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cceEEEecccHHHHhccCc---eEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 4699999999999998875 8999999999999999999999988764 45999999997 457999999999
Q ss_pred EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHhcCCCCCCCCC
Q 025454 173 TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQSDPVLNDGQS 217 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~i~~~~~~ 217 (252)
||.+|+||.....+.| .+.....+.|+..+.|+....+.+
T Consensus 102 TlkiFrnG~~~~~Y~G-----~r~adgIv~wl~kq~gPa~~~l~~ 141 (493)
T KOG0190|consen 102 TLKIFRNGRSAQDYNG-----PREADGIVKWLKKQSGPASKTLKT 141 (493)
T ss_pred eEEEEecCCcceeccC-----cccHHHHHHHHHhccCCCceeccc
Confidence 9999999987444444 455566677777788888777764
No 48
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.57 E-value=3.1e-14 Score=108.02 Aligned_cols=87 Identities=13% Similarity=0.202 Sum_probs=73.2
Q ss_pred HHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEe
Q 025454 111 VREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANY 186 (252)
Q Consensus 111 ~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~ 186 (252)
..++.+.+ ++|+|.||++||+.|+.+.|.++.+++++++ +.|++||.+. +...|++.++||+++|++|+.+.++
T Consensus 6 ~~~~~~~~--~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~ 83 (97)
T cd02949 6 RKLYHESD--RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEI 83 (97)
T ss_pred HHHHHhCC--CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEE
Confidence 45555544 6999999999999999999999999999975 8999999864 4578999999999999999999999
Q ss_pred ecccccCCCCCHHHHHHHH
Q 025454 187 VGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 187 vG~~~~G~~~~~e~lE~~L 205 (252)
.|.. +.+++..+|
T Consensus 84 ~g~~------~~~~~~~~l 96 (97)
T cd02949 84 SGVK------MKSEYREFI 96 (97)
T ss_pred eCCc------cHHHHHHhh
Confidence 9974 345555554
No 49
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.57 E-value=1.8e-14 Score=113.02 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=70.0
Q ss_pred HHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEE--
Q 025454 110 FVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKA-- 184 (252)
Q Consensus 110 f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~-- 184 (252)
|.+.+.+ ++.+||.||++||++|+.|.|.|++++..++.++|++|+.+. +...|+|+++||+++|++|....
T Consensus 15 ~~~~l~~---~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~~ 91 (113)
T cd02975 15 FFKEMKN---PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGGI 91 (113)
T ss_pred HHHHhCC---CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecceE
Confidence 5555543 257999999999999999999999999999889999999874 45889999999999999987665
Q ss_pred EeecccccCCCCCHHHHHHHHH
Q 025454 185 NYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 185 ~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++.|.. +..++..+|.
T Consensus 92 ~~~G~~------~~~el~~~i~ 107 (113)
T cd02975 92 RYYGLP------AGYEFASLIE 107 (113)
T ss_pred EEEecC------chHHHHHHHH
Confidence 566642 2355555554
No 50
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.56 E-value=1.8e-14 Score=109.11 Aligned_cols=96 Identities=21% Similarity=0.313 Sum_probs=76.2
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC---CceEEEEeccC----CCCCCCCCcccEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP---ATKFVKIISTD----CIPNYPDRNLPTV 174 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~---~vkFvkI~~~~----~~~~~~i~~lPTl 174 (252)
|.+++..+|...+.+.+ ++|||+||++||++|+.+.|.|..++..+. .+.|++|+... +...|+|+++||+
T Consensus 2 ~~~l~~~~~~~~~~~~~--~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~ 79 (105)
T cd02998 2 VVELTDSNFDKVVGDDK--KDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTL 79 (105)
T ss_pred eEEcchhcHHHHhcCCC--CcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEE
Confidence 67888999999775543 689999999999999999999999999986 48999999765 3588999999999
Q ss_pred EEEECCe-EEEEeecccccCCCCCHHHHHHHH
Q 025454 175 LVYNNGA-VKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 175 liy~~G~-~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
++|.+|. ....+.| ..+.+.|..||
T Consensus 80 ~~~~~~~~~~~~~~g------~~~~~~l~~~i 105 (105)
T cd02998 80 KFFPKGSTEPVKYEG------GRDLEDLVKFV 105 (105)
T ss_pred EEEeCCCCCccccCC------ccCHHHHHhhC
Confidence 9999884 3333333 24566666553
No 51
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.55 E-value=1.9e-14 Score=110.36 Aligned_cols=90 Identities=18% Similarity=0.238 Sum_probs=70.9
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC----CceEEEEeccC---CCCCCCCCcccEEEEEECC
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP----ATKFVKIISTD---CIPNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~----~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G 180 (252)
++|.+ +.+ +.+|+|+||++||++|+.+.|.|.+++..|. .+.|++++++. +...|+|+++||+++|++|
T Consensus 7 ~~~~~-~~~---~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~ 82 (104)
T cd03000 7 DSFKD-VRK---EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD 82 (104)
T ss_pred hhhhh-hcc---CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC
Confidence 55654 433 2589999999999999999999999999873 38899998764 4578999999999999887
Q ss_pred eEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 181 AVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 181 ~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
. +..+.|. .+.+.|..++.+.
T Consensus 83 ~-~~~~~G~------~~~~~l~~~~~~~ 103 (104)
T cd03000 83 L-AYNYRGP------RTKDDIVEFANRV 103 (104)
T ss_pred C-ceeecCC------CCHHHHHHHHHhh
Confidence 4 3445553 4678888888764
No 52
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.55 E-value=2.6e-14 Score=107.69 Aligned_cols=95 Identities=20% Similarity=0.276 Sum_probs=79.1
Q ss_pred cChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC---ceEEEEeccCC---CCCCCCCcccEEEEEE
Q 025454 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA---TKFVKIISTDC---IPNYPDRNLPTVLVYN 178 (252)
Q Consensus 105 Is~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~---vkFvkI~~~~~---~~~~~i~~lPTlliy~ 178 (252)
|+..+|...+. +++++||+||++||+.|+.+.+.|+.++..+.. +.|++++++.. ...|+|.++||+++|+
T Consensus 1 l~~~~~~~~~~---~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~ 77 (102)
T TIGR01126 1 LTASNFDDIVL---SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFP 77 (102)
T ss_pred CchhhHHHHhc---cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEec
Confidence 46778888886 246899999999999999999999999999874 99999998753 4789999999999999
Q ss_pred CCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 179 NGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 179 ~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+|..+..+.|. .+.+.|..+|.++
T Consensus 78 ~~~~~~~~~g~------~~~~~l~~~i~~~ 101 (102)
T TIGR01126 78 KGKKPVDYEGG------RDLEAIVEFVNEK 101 (102)
T ss_pred CCCcceeecCC------CCHHHHHHHHHhc
Confidence 99766666663 4577888888763
No 53
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=1.4e-14 Score=110.92 Aligned_cols=89 Identities=16% Similarity=0.165 Sum_probs=72.8
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHH---HHHHHHCC-CceEEEEeccC-------CCCCCCCCcccEEEE
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCL---EELARKYP-ATKFVKIISTD-------CIPNYPDRNLPTVLV 176 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l---~~LA~ky~-~vkFvkI~~~~-------~~~~~~i~~lPTlli 176 (252)
++|.+.+.+. ++|||.||++||++|+.|.+.+ .+++..+. .+.|++||.+. +..+|++.++||+++
T Consensus 2 ~~~~~~~~~~---k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQG---KPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcC---CeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 4566666433 6999999999999999999988 67888887 68999998753 237899999999999
Q ss_pred EE--CCeEEEEeecccccCCCCCHHHHHHHH
Q 025454 177 YN--NGAVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 177 y~--~G~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
|+ +|+.+.++.|.. +.++|..+|
T Consensus 79 ~~~~~g~~~~~~~G~~------~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFL------TADEFLEAL 103 (104)
T ss_pred ECCCCCCCCccccccc------CHHHHHHHh
Confidence 99 799999888863 567777766
No 54
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.54 E-value=2.4e-14 Score=113.60 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=65.8
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEc-------CCCchhhhHHHHHHHHHHHCC-CceEEEEeccC----------CCCCCC
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYK-------DGFAECGLLMQCLEELARKYP-ATKFVKIISTD----------CIPNYP 167 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya-------~wc~~Ck~l~~~l~~LA~ky~-~vkFvkI~~~~----------~~~~~~ 167 (252)
+.++|.+.|... ++++|||.||| +||++|+.+.|.|++++.+|+ .++|++|++++ ....|.
T Consensus 8 ~~~~f~~~i~~~-~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 8 GYEEFLKLLKSH-EGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred CHHHHHHHHHhc-CCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC
Confidence 467888888764 45799999999 999999999999999999999 69999999853 347889
Q ss_pred CC-cccEEEEEECCeE
Q 025454 168 DR-NLPTVLVYNNGAV 182 (252)
Q Consensus 168 i~-~lPTlliy~~G~~ 182 (252)
|. ++|||++|++|..
T Consensus 87 I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 87 LTTGVPTLLRWKTPQR 102 (119)
T ss_pred cccCCCEEEEEcCCce
Confidence 98 9999999988753
No 55
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.54 E-value=5.2e-14 Score=134.40 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=82.7
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEeccC----CC-CCCCCCccc
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIISTD----CI-PNYPDRNLP 172 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~~----~~-~~~~i~~lP 172 (252)
..|++++..+|...|.....+++|||+|||+||++|+.|.|.|+++|.+|.+ ++|++|+++. .. ..|+|.++|
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~P 430 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 430 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccc
Confidence 3689999999999986333457999999999999999999999999999964 8999998763 22 579999999
Q ss_pred EEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHh
Q 025454 173 TVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQ 207 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~ 207 (252)
||++|++|... ...+ |...+.+.|-.|+..
T Consensus 431 Tii~Fk~g~~~-----~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 431 TILFFPKHSSR-----PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred eEEEEECCCCC-----ceeCCCCCCCHHHHHHHHHh
Confidence 99999999521 1234 445677888777763
No 56
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.52 E-value=1.6e-13 Score=99.99 Aligned_cols=88 Identities=32% Similarity=0.468 Sum_probs=75.1
Q ss_pred hHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEE
Q 025454 109 DFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKAN 185 (252)
Q Consensus 109 ~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~ 185 (252)
+|...+... ++++|.||++||+.|+.+.+.|..++..++++.|+.++.+. +...|++.++||+++|++|+.+..
T Consensus 2 ~~~~~~~~~---~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~~ 78 (93)
T cd02947 2 EFEELIKSA---KPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVDR 78 (93)
T ss_pred chHHHHhcC---CcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEEE
Confidence 466667654 58999999999999999999999999998889999999875 458999999999999999999988
Q ss_pred eecccccCCCCCHHHHHHHH
Q 025454 186 YVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 186 ~vG~~~~G~~~~~e~lE~~L 205 (252)
+.|.. +.+.|..+|
T Consensus 79 ~~g~~------~~~~l~~~i 92 (93)
T cd02947 79 VVGAD------PKEELEEFL 92 (93)
T ss_pred EecCC------CHHHHHHHh
Confidence 88753 356676665
No 57
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.52 E-value=5.2e-14 Score=104.65 Aligned_cols=92 Identities=24% Similarity=0.322 Sum_probs=75.9
Q ss_pred EcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC---CCceEEEEeccC---CCCCCCCCcccEEEEE
Q 025454 104 PISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY---PATKFVKIISTD---CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 104 eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky---~~vkFvkI~~~~---~~~~~~i~~lPTlliy 177 (252)
+++..+|.+.+.+.. ++||.||++||++|+.+.+.|..+++.+ ..+.|+.++.+. +...|+|+++||+++|
T Consensus 2 ~l~~~~~~~~i~~~~---~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~ 78 (101)
T cd02961 2 ELTDDNFDELVKDSK---DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLF 78 (101)
T ss_pred cccHHHHHHHHhCCC---cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEE
Confidence 577889999998653 8999999999999999999999999998 469999999874 4589999999999999
Q ss_pred ECC-eEEEEeecccccCCCCCHHHHHHH
Q 025454 178 NNG-AVKANYVGLRSFGRRCTPEGVALV 204 (252)
Q Consensus 178 ~~G-~~v~~~vG~~~~G~~~~~e~lE~~ 204 (252)
.+| ..+.++.|. .+.+.+..|
T Consensus 79 ~~~~~~~~~~~g~------~~~~~i~~~ 100 (101)
T cd02961 79 PNGSKEPVKYEGP------RTLESLVEF 100 (101)
T ss_pred cCCCcccccCCCC------cCHHHHHhh
Confidence 988 666655554 245555544
No 58
>PLN02309 5'-adenylylsulfate reductase
Probab=99.50 E-value=1.1e-13 Score=132.19 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=84.3
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc-C---CC-CCCCCCcc
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST-D---CI-PNYPDRNL 171 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~-~---~~-~~~~i~~l 171 (252)
.+.|.+++.++|.+.+.....+++|||.||+|||++|+.|.|.|.+||.+|.. ++|++||++ . +. +.|+|.++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~ 423 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSF 423 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCcee
Confidence 34799999999999886444568999999999999999999999999999854 999999987 3 23 46999999
Q ss_pred cEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHh
Q 025454 172 PTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQ 207 (252)
Q Consensus 172 PTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~ 207 (252)
|||++|++|... ...+ |..-+.+.|-.|+..
T Consensus 424 PTil~f~~g~~~-----~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 424 PTILLFPKNSSR-----PIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eEEEEEeCCCCC-----eeecCCCCcCHHHHHHHHHH
Confidence 999999998532 2234 445667788887764
No 59
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=1.4e-13 Score=131.40 Aligned_cols=106 Identities=24% Similarity=0.286 Sum_probs=88.1
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC---ceEEEEeccC-CCCCCCCCcccEE
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA---TKFVKIISTD-CIPNYPDRNLPTV 174 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~---vkFvkI~~~~-~~~~~~i~~lPTl 174 (252)
-+.|..+.+.+|...|.+.+ +-|+|.||||||+||+.+.|++++||.+|.+ +.++|||++. -++...+.++|||
T Consensus 365 ~~pVkvvVgknfd~iv~de~--KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~~~~~~~~fPTI 442 (493)
T KOG0190|consen 365 RSPVKVVVGKNFDDIVLDEG--KDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDVPSLKVDGFPTI 442 (493)
T ss_pred cCCeEEEeecCHHHHhhccc--cceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccCccccccccceE
Confidence 36799999999999999887 4599999999999999999999999999864 8999999974 4677888899999
Q ss_pred EEEECCeEEEEeecccccCCCCCHHHHHHHHHhcCC
Q 025454 175 LVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQSDP 210 (252)
Q Consensus 175 liy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~ 210 (252)
++|+.|....- ..++..-+.++|..++..+|-
T Consensus 443 ~~~pag~k~~p----v~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 443 LFFPAGHKSNP----VIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred EEecCCCCCCC----cccCCCcchHHHHhhhccCCC
Confidence 99999874322 223223457899999998886
No 60
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.46 E-value=3.2e-13 Score=127.50 Aligned_cols=128 Identities=22% Similarity=0.304 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh--hcCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--
Q 025454 76 DRFLEEYRKKRLAEMREATK--ISRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-- 151 (252)
Q Consensus 76 d~~l~~yR~kRl~el~~~~~--~~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-- 151 (252)
..|++.+..-+++...+... ....|.|..++..+|.+.|.+.+ +.|||.||++||++|+.|.|.+.+++..+.+
T Consensus 320 ~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~--~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~ 397 (462)
T TIGR01130 320 EAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDET--KDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAE 397 (462)
T ss_pred HHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCC--CeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCC
Confidence 35777777666654433221 12357899999999999997654 7899999999999999999999999998874
Q ss_pred --ceEEEEeccC--CCCCCCCCcccEEEEEECCeEE--EEeecccccCCCCCHHHHHHHHHhcCCCC
Q 025454 152 --TKFVKIISTD--CIPNYPDRNLPTVLVYNNGAVK--ANYVGLRSFGRRCTPEGVALVLCQSDPVL 212 (252)
Q Consensus 152 --vkFvkI~~~~--~~~~~~i~~lPTlliy~~G~~v--~~~vG~~~~G~~~~~e~lE~~L~~~g~i~ 212 (252)
++|+++|++. +.. |++.++||+++|.+|..+ ..+.| ..+.+.|..+|.+.+-.+
T Consensus 398 ~~i~~~~id~~~n~~~~-~~i~~~Pt~~~~~~~~~~~~~~~~g------~~~~~~l~~~l~~~~~~~ 457 (462)
T TIGR01130 398 SDVVIAKMDATANDVPP-FEVEGFPTIKFVPAGKKSEPVPYDG------DRTLEDFSKFIAKHATFP 457 (462)
T ss_pred CcEEEEEEECCCCccCC-CCccccCEEEEEeCCCCcCceEecC------cCCHHHHHHHHHhcCCCC
Confidence 7899999863 344 999999999999999764 33444 346788999998876433
No 61
>PTZ00102 disulphide isomerase; Provisional
Probab=99.45 E-value=6e-13 Score=126.92 Aligned_cols=105 Identities=23% Similarity=0.282 Sum_probs=88.4
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC---ceEEEEeccC---CCCCCCCCccc
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA---TKFVKIISTD---CIPNYPDRNLP 172 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~---vkFvkI~~~~---~~~~~~i~~lP 172 (252)
-+.|..++..+|.+.|.+.+ ++|+|.|||+||++|+.|.|.|+++|..+.+ +.|++++++. ....|+++++|
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~--k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~P 433 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSD--KDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFP 433 (477)
T ss_pred CCCeEEecccchHHHHhcCC--CCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccC
Confidence 56799999999999987664 6899999999999999999999999998864 8899999864 34789999999
Q ss_pred EEEEEECCeEE-EEeecccccCCCCCHHHHHHHHHhcCCC
Q 025454 173 TVLVYNNGAVK-ANYVGLRSFGRRCTPEGVALVLCQSDPV 211 (252)
Q Consensus 173 Tlliy~~G~~v-~~~vG~~~~G~~~~~e~lE~~L~~~g~i 211 (252)
|+++|++|..+ .++.|. .+.+.+..+|.++...
T Consensus 434 t~~~~~~~~~~~~~~~G~------~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 434 TILFVKAGERTPIPYEGE------RTVEGFKEFVNKHATN 467 (477)
T ss_pred eEEEEECCCcceeEecCc------CCHHHHHHHHHHcCCC
Confidence 99999998765 355553 4678999999987643
No 62
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.41 E-value=6e-13 Score=105.05 Aligned_cols=97 Identities=9% Similarity=0.127 Sum_probs=73.3
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEc--CCCc---hhhhHHHHHHHHHHHCCCceEEEEecc--------CCCCCCCC
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYK--DGFA---ECGLLMQCLEELARKYPATKFVKIIST--------DCIPNYPD 168 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya--~wc~---~Ck~l~~~l~~LA~ky~~vkFvkI~~~--------~~~~~~~i 168 (252)
++.++..+|.+.|.+. ..|+|.||| |||+ +|+.|.|.+...+. .+.+++|+++ ++..+|+|
T Consensus 3 ~v~L~~~nF~~~v~~~---~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I 76 (116)
T cd03007 3 CVDLDTVTFYKVIPKF---KYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKL 76 (116)
T ss_pred eeECChhhHHHHHhcC---CcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCC
Confidence 6789999999999765 489999999 8898 67777666655443 3889999983 35689999
Q ss_pred C--cccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHhc
Q 025454 169 R--NLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQS 208 (252)
Q Consensus 169 ~--~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~ 208 (252)
+ ++|||++|++|..-. ...+ |...+.+.|-.|+.+.
T Consensus 77 ~~~gyPTl~lF~~g~~~~----~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 77 DKESYPVIYLFHGGDFEN----PVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CcCCCCEEEEEeCCCcCC----CccCCCCcccHHHHHHHHHhc
Confidence 9 999999999995211 1234 4335678887777664
No 63
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.38 E-value=1.8e-12 Score=122.33 Aligned_cols=87 Identities=24% Similarity=0.408 Sum_probs=74.9
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC----CCceEEEEeccC---CCCCCCCCcccE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY----PATKFVKIISTD---CIPNYPDRNLPT 173 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky----~~vkFvkI~~~~---~~~~~~i~~lPT 173 (252)
.|..++..+|...+.+. .+++|.|||+||++|+.+.|.+.++|..+ +.+.|++|+++. +...|+|.++||
T Consensus 2 ~v~~l~~~~~~~~i~~~---~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSH---EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CceECCHHHHHHHHhcC---CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccE
Confidence 47789999999988654 48999999999999999999999988765 348999999875 458999999999
Q ss_pred EEEEECCeE-EEEeeccc
Q 025454 174 VLVYNNGAV-KANYVGLR 190 (252)
Q Consensus 174 lliy~~G~~-v~~~vG~~ 190 (252)
+++|++|.. +..+.|..
T Consensus 79 ~~~~~~g~~~~~~~~g~~ 96 (462)
T TIGR01130 79 LKIFRNGEDSVSDYNGPR 96 (462)
T ss_pred EEEEeCCccceeEecCCC
Confidence 999999988 77777753
No 64
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.37 E-value=2.1e-12 Score=102.06 Aligned_cols=91 Identities=18% Similarity=0.180 Sum_probs=68.4
Q ss_pred hHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHH---HHHHHCC-CceEEEEeccC----------------CCCCCCC
Q 025454 109 DFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLE---ELARKYP-ATKFVKIISTD----------------CIPNYPD 168 (252)
Q Consensus 109 ~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~---~LA~ky~-~vkFvkI~~~~----------------~~~~~~i 168 (252)
++.....+.+ ++|+|.||++||++|+.|.+.+. .+...+. .+.|++|+.+. +...|+|
T Consensus 5 ~~~~a~~~~~--k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v 82 (125)
T cd02951 5 DLAEAAADGK--KPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYRV 82 (125)
T ss_pred HHHHHHHcCC--CcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcCC
Confidence 3444444331 58999999999999999999874 5655554 47788887653 2468999
Q ss_pred CcccEEEEEEC--CeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 169 RNLPTVLVYNN--GAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 169 ~~lPTlliy~~--G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.++||+++|.+ |+++.+++|.. +.+.+..+|.+
T Consensus 83 ~~~Pt~~~~~~~gg~~~~~~~G~~------~~~~~~~~l~~ 117 (125)
T cd02951 83 RFTPTVIFLDPEGGKEIARLPGYL------PPDEFLAYLEY 117 (125)
T ss_pred ccccEEEEEcCCCCceeEEecCCC------CHHHHHHHHHH
Confidence 99999999997 59999999863 45667666654
No 65
>PTZ00102 disulphide isomerase; Provisional
Probab=99.37 E-value=3.8e-12 Score=121.44 Aligned_cols=99 Identities=20% Similarity=0.307 Sum_probs=82.4
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC----CCceEEEEeccC---CCCCCCCCccc
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY----PATKFVKIISTD---CIPNYPDRNLP 172 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky----~~vkFvkI~~~~---~~~~~~i~~lP 172 (252)
..|..++..+|...+.+. ..++|.||++||++|+.+.|.+.+++..+ +.+.|++||++. +..+|+|.++|
T Consensus 32 ~~v~~l~~~~f~~~i~~~---~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~P 108 (477)
T PTZ00102 32 EHVTVLTDSTFDKFITEN---EIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYP 108 (477)
T ss_pred CCcEEcchhhHHHHHhcC---CcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCccc
Confidence 468889999999988754 48999999999999999999999988664 459999999864 45899999999
Q ss_pred EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 173 TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
|+++|++|..+ ++.|. .+.+.|..||.+.
T Consensus 109 t~~~~~~g~~~-~y~g~------~~~~~l~~~l~~~ 137 (477)
T PTZ00102 109 TIKFFNKGNPV-NYSGG------RTADGIVSWIKKL 137 (477)
T ss_pred EEEEEECCceE-EecCC------CCHHHHHHHHHHh
Confidence 99999999876 66654 3567777777763
No 66
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.33 E-value=4e-12 Score=92.79 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=59.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCCCCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHH
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVA 202 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE 202 (252)
.|.||++||++|+.+.|.+.+++++++. +.|++|+..+.+..|++.++|||++ ||+.+ +.|.. -+.+.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~~~a~~~~v~~vPti~i--~G~~~--~~G~~-----~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDMNEILEAGVTATPGVAV--DGELV--IMGKI-----PSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHcCCCcCCEEEE--CCEEE--EEecc-----CCHHHHH
Confidence 4789999999999999999999999975 8999998444467799999999999 99887 66642 2345666
Q ss_pred HHH
Q 025454 203 LVL 205 (252)
Q Consensus 203 ~~L 205 (252)
.+|
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 554
No 67
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.32 E-value=2.3e-12 Score=101.71 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=57.9
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHC-CCceEEEEeccCC----CCCCCCCc--ccEEEEEE-CCeEEEEeecccc
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKY-PATKFVKIISTDC----IPNYPDRN--LPTVLVYN-NGAVKANYVGLRS 191 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky-~~vkFvkI~~~~~----~~~~~i~~--lPTlliy~-~G~~v~~~vG~~~ 191 (252)
+++|+|.|||+||++|+.|.|.+.+++..+ ....|+.|+.+.. ...|.+.+ +||+++|. +|+++.++++...
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~~ 98 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKKG 98 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCCC
Confidence 479999999999999999999999987754 3357777766422 36788876 99999995 9999997776543
No 68
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.32 E-value=3.8e-12 Score=96.64 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=69.2
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCC--cccEEEEEEC--CeEEEEeecccc
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDR--NLPTVLVYNN--GAVKANYVGLRS 191 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~--~lPTlliy~~--G~~v~~~vG~~~ 191 (252)
++++++.||++||++|+.+.|.|.++|++|.+ ++|+.||+++ ....|++. ++|||++|++ |......
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~----- 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMP----- 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCC-----
Confidence 36899999999999999999999999999976 9999999986 56889999 9999999999 6544322
Q ss_pred cCCCCCHHHHHHHHHh
Q 025454 192 FGRRCTPEGVALVLCQ 207 (252)
Q Consensus 192 ~G~~~~~e~lE~~L~~ 207 (252)
+..++.+.|..|+.+
T Consensus 87 -~~~~~~~~l~~fi~~ 101 (103)
T cd02982 87 -EEELTAESLEEFVED 101 (103)
T ss_pred -ccccCHHHHHHHHHh
Confidence 223578999999875
No 69
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.29 E-value=1.7e-11 Score=106.24 Aligned_cols=80 Identities=21% Similarity=0.335 Sum_probs=62.5
Q ss_pred eEEEEEEc---CCCchhhhHHHHHHHHHHHCCCce--EEEEeccC---CCCCCCCCcccEEEEEECCeEEE-Eeeccccc
Q 025454 122 WVVVILYK---DGFAECGLLMQCLEELARKYPATK--FVKIISTD---CIPNYPDRNLPTVLVYNNGAVKA-NYVGLRSF 192 (252)
Q Consensus 122 ~VVV~fya---~wc~~Ck~l~~~l~~LA~ky~~vk--FvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~-~~vG~~~~ 192 (252)
..|+.|++ +||++|+.|.|.|++++..|+.+. |++++.+. ++..|+|.++|||++|++|+.+. +++|...
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G~~~- 99 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTGIPA- 99 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEeecCC-
Confidence 34555777 999999999999999999998755 66666533 46899999999999999999985 8888642
Q ss_pred CCCCCHHHHHHHHHh
Q 025454 193 GRRCTPEGVALVLCQ 207 (252)
Q Consensus 193 G~~~~~e~lE~~L~~ 207 (252)
.+.+..+|..
T Consensus 100 -----~~~l~~~i~~ 109 (215)
T TIGR02187 100 -----GYEFAALIED 109 (215)
T ss_pred -----HHHHHHHHHH
Confidence 3555555543
No 70
>PHA02125 thioredoxin-like protein
Probab=99.29 E-value=1.5e-11 Score=89.29 Aligned_cols=58 Identities=17% Similarity=0.368 Sum_probs=50.6
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEeecc
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANYVGL 189 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~vG~ 189 (252)
|+.||++||++|+.+.|.|..++ ++|++|+.+. +...|+|.++||++ +|+.++++.|+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~ 62 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGV 62 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCC
Confidence 78999999999999999998764 5789998764 45889999999998 79999999886
No 71
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.22 E-value=8.8e-11 Score=85.42 Aligned_cols=75 Identities=17% Similarity=0.283 Sum_probs=60.4
Q ss_pred EEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEeecccccCCCCCH
Q 025454 123 VVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTP 198 (252)
Q Consensus 123 VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~ 198 (252)
.|..||++||++|+.+.|.|+++++.|+. +.|++||.+. ...+|+++++||+++ +|+. ++.|. .+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~--~~~G~------~~~ 71 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV--EFIGA------PTK 71 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE--EEecC------CCH
Confidence 46789999999999999999999999864 8999999764 347899999999986 8863 56664 246
Q ss_pred HHHHHHHHh
Q 025454 199 EGVALVLCQ 207 (252)
Q Consensus 199 e~lE~~L~~ 207 (252)
+.+..+|..
T Consensus 72 ~~l~~~l~~ 80 (82)
T TIGR00411 72 EELVEAIKK 80 (82)
T ss_pred HHHHHHHHh
Confidence 777777654
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.19 E-value=1.3e-10 Score=100.65 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=63.4
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEeecccccCCCCCH
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTP 198 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~ 198 (252)
.+|+.||++||++|+.+.+.+..++..++.++|.+||.+. +...|+|.++||+++|++|.. ++|.. +.
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~~---~~G~~------~~ 205 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVEE---FVGAY------PE 205 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCEE---EECCC------CH
Confidence 3445599999999999999999999999999999999864 458899999999999998864 66653 35
Q ss_pred HHHHHHHHh
Q 025454 199 EGVALVLCQ 207 (252)
Q Consensus 199 e~lE~~L~~ 207 (252)
++|..+|.+
T Consensus 206 ~~l~~~l~~ 214 (215)
T TIGR02187 206 EQFLEYILS 214 (215)
T ss_pred HHHHHHHHh
Confidence 677766654
No 73
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.18 E-value=4.7e-11 Score=117.43 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=80.6
Q ss_pred eEEc-ChhhHHHHHHcCC-CCceEEEEEEcCCCchhhhHHHHH---HHHHHHCCCceEEEEeccCC-------CCCCCCC
Q 025454 102 VMPI-SGSDFVREVSQAP-PDVWVVVILYKDGFAECGLLMQCL---EELARKYPATKFVKIISTDC-------IPNYPDR 169 (252)
Q Consensus 102 v~eI-s~~~f~~~V~~~~-~~~~VVV~fya~wc~~Ck~l~~~l---~~LA~ky~~vkFvkI~~~~~-------~~~~~i~ 169 (252)
...+ +.++|.+.+.++. ++++|+|+|||+||++|+.|.+.. .++.+.+.++.|+++|.++. .++|++.
T Consensus 454 ~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~v~ 533 (571)
T PRK00293 454 FQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYNVL 533 (571)
T ss_pred ceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcCCC
Confidence 4455 5688888886542 357999999999999999999875 67888888899999998642 3689999
Q ss_pred cccEEEEEE-CCeEE--EEeecccccCCCCCHHHHHHHHHhc
Q 025454 170 NLPTVLVYN-NGAVK--ANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 170 ~lPTlliy~-~G~~v--~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
++||+++|. +|+.+ .+++|. .+.+++..+|.+.
T Consensus 534 g~Pt~~~~~~~G~~i~~~r~~G~------~~~~~f~~~L~~~ 569 (571)
T PRK00293 534 GLPTILFFDAQGQEIPDARVTGF------MDAAAFAAHLRQL 569 (571)
T ss_pred CCCEEEEECCCCCCcccccccCC------CCHHHHHHHHHHh
Confidence 999999996 79884 677775 3578888888764
No 74
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.16 E-value=1.2e-10 Score=91.97 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=57.6
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc--------------------------CCCCCCCCCccc-
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST--------------------------DCIPNYPDRNLP- 172 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~--------------------------~~~~~~~i~~lP- 172 (252)
+++|||+||++||++|+.+.|.|.++++++. ++|+.|..+ .+...|++.++|
T Consensus 25 gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~-~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~~~P~ 103 (127)
T cd03010 25 GKPYLLNVWASWCAPCREEHPVLMALARQGR-VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVYGVPE 103 (127)
T ss_pred CCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC-cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCCCCCe
Confidence 5799999999999999999999999998884 777777531 112468999999
Q ss_pred EEEEEECCeEEEEeeccc
Q 025454 173 TVLVYNNGAVKANYVGLR 190 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~ 190 (252)
++++.++|+++.++.|..
T Consensus 104 ~~~ld~~G~v~~~~~G~~ 121 (127)
T cd03010 104 TFLIDGDGIIRYKHVGPL 121 (127)
T ss_pred EEEECCCceEEEEEeccC
Confidence 666667999999999864
No 75
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.13 E-value=2.6e-10 Score=102.56 Aligned_cols=82 Identities=10% Similarity=0.152 Sum_probs=61.9
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC--------------CCCCCCCCcccEEEEEEC-CeEE
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD--------------CIPNYPDRNLPTVLVYNN-GAVK 183 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~--------------~~~~~~i~~lPTlliy~~-G~~v 183 (252)
+++++||+||++||++|+.+.|.|..++.+|. +.++.|+.+. ....|+|.++||++++.. |..+
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v 243 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQF 243 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEE
Confidence 35799999999999999999999999999996 4554444321 236899999999999986 5555
Q ss_pred EE-eecccccCCCCCHHHHHHHHHh
Q 025454 184 AN-YVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 184 ~~-~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.. ..|+ ++.++|+..+..
T Consensus 244 ~~v~~G~------~s~~eL~~~i~~ 262 (271)
T TIGR02740 244 TPIGFGV------MSADELVDRILL 262 (271)
T ss_pred EEEEeCC------CCHHHHHHHHHH
Confidence 43 3464 456777666654
No 76
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.12 E-value=1.8e-10 Score=81.13 Aligned_cols=58 Identities=17% Similarity=0.288 Sum_probs=50.6
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v 183 (252)
|+.||++||++|+.+.+.|++++..++.+.|..+|.++ +...|++.++||+++ +|+.+
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i--~~~~~ 63 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI--NGKVE 63 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE--CCEEE
Confidence 67899999999999999999999999999999998764 457899999999866 67544
No 77
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.10 E-value=5e-10 Score=94.86 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=61.3
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC--------------------------CCCCCCCCccc
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD--------------------------CIPNYPDRNLP 172 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~--------------------------~~~~~~i~~lP 172 (252)
++++|||+||++||++|+...|.|.+++.+ +++|+.|+.++ ....|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 457999999999999999999999999764 57788776421 01268999999
Q ss_pred E-EEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 173 T-VLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 173 T-lliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+ +++-++|+++.+++|.. +.+.++..+..
T Consensus 145 ~t~vid~~G~i~~~~~G~~------~~~~l~~~i~~ 174 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAGDL------NPRVWESEIKP 174 (185)
T ss_pred eEEEECCCceEEEEEecCC------CHHHHHHHHHH
Confidence 5 55557999999999853 45566555543
No 78
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.10 E-value=2.7e-10 Score=110.47 Aligned_cols=83 Identities=11% Similarity=0.096 Sum_probs=67.2
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEecc-------------------------------CCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIIST-------------------------------DCIPN 165 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~-------------------------------~~~~~ 165 (252)
++++|||+|||+||++|+.+.|.|.+|+++|. ++.|+.|... .+...
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 45799999999999999999999999999986 5777766420 12257
Q ss_pred CCCCcccEEE-EEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 166 YPDRNLPTVL-VYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 166 ~~i~~lPTll-iy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
|+|+++||++ |.++|+++..++|.. +.++|..+|..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G~~------~~eeL~a~Ie~ 171 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKGSI------SEAQALALIRN 171 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeCCC------CHHHHHHHHHH
Confidence 9999999995 457999999999963 56788887773
No 79
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.09 E-value=7.4e-10 Score=91.56 Aligned_cols=80 Identities=11% Similarity=0.189 Sum_probs=59.2
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---------------C-CCC---CCCcccEEEEEE-CC
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---------------I-PNY---PDRNLPTVLVYN-NG 180 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---------------~-~~~---~i~~lPTlliy~-~G 180 (252)
.++||+|||+||++|+...|.|.+++++|. +.|+-|+.+.- . ..| ++.++||.+++. +|
T Consensus 51 ~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G 129 (153)
T TIGR02738 51 DYALVFFYQSTCPYCHQFAPVLKRFSQQFG-LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNT 129 (153)
T ss_pred CCEEEEEECCCChhHHHHHHHHHHHHHHcC-CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCC
Confidence 478999999999999999999999999994 56665544321 1 224 788999999985 45
Q ss_pred e-EEEEeecccccCCCCCHHHHHHHHHh
Q 025454 181 A-VKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 181 ~-~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
. .+....|. .+.+.++..+.+
T Consensus 130 ~~i~~~~~G~------~s~~~l~~~I~~ 151 (153)
T TIGR02738 130 RKAYPVLQGA------VDEAELANRMDE 151 (153)
T ss_pred CEEEEEeecc------cCHHHHHHHHHH
Confidence 4 56667775 456777776654
No 80
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.08 E-value=6.9e-10 Score=92.92 Aligned_cols=82 Identities=18% Similarity=0.109 Sum_probs=63.0
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc--------------------------CCCCCCCCCccc
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST--------------------------DCIPNYPDRNLP 172 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~--------------------------~~~~~~~i~~lP 172 (252)
++++|||+||++||++|+.+.|.+.+++++ ++.++.|+.+ .....|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 347999999999999999999999999875 3566665431 122568999999
Q ss_pred -EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 173 -TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 173 -Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
|+++.++|+++.+++|. .+.++++.+|.++
T Consensus 140 ~~~~id~~G~i~~~~~G~------~~~~~l~~~l~~~ 170 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAGP------LNNEVWTEGFLPA 170 (173)
T ss_pred eEEEEcCCceEEEEEecc------CCHHHHHHHHHHH
Confidence 55555799999999985 3567777777653
No 81
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.07 E-value=2.1e-10 Score=102.96 Aligned_cols=65 Identities=18% Similarity=0.211 Sum_probs=56.0
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC----ceEEEEeccC---CCCCCCCCcccEEEEEECCeEEE
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA----TKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~----vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~ 184 (252)
+...+|.||||||++|+.+.|+|.++.....+ +|+.|++++. ++.+|+|+++||+++|++|..++
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~d 114 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAID 114 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeee
Confidence 34789999999999999999999998766543 8999999985 35899999999999999987654
No 82
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.02 E-value=3.4e-10 Score=87.17 Aligned_cols=81 Identities=20% Similarity=0.219 Sum_probs=57.8
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHH---HHHCC-CceEEEEeccC-----------------------CCCCCCCCcc
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEEL---ARKYP-ATKFVKIISTD-----------------------CIPNYPDRNL 171 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~L---A~ky~-~vkFvkI~~~~-----------------------~~~~~~i~~l 171 (252)
+++++||.|+++||+.|+.+.+.+..+ ...+. .+.++.++... +...|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 457999999999999999999998864 33332 36666665431 2367999999
Q ss_pred cEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHH
Q 025454 172 PTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 172 PTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
||++++. +|+.+.++.|.. +.++|..+|
T Consensus 84 Pt~~~~d~~G~~v~~~~G~~------~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPGYL------SPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEESS--------HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecCCC------CHHHHHhhC
Confidence 9999995 799999999974 567777765
No 83
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.01 E-value=5.2e-10 Score=88.86 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=52.8
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC----CceEEEEeccC---------------------------CCCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP----ATKFVKIISTD---------------------------CIPNYP 167 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~----~vkFvkI~~~~---------------------------~~~~~~ 167 (252)
++++|||+||++||++|+.+.|.|.++..++. +++++-|..+. +...|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 34789999999999999999999999887763 45566554321 124799
Q ss_pred CCcccEEEEEE-CCeEEEE
Q 025454 168 DRNLPTVLVYN-NGAVKAN 185 (252)
Q Consensus 168 i~~lPTlliy~-~G~~v~~ 185 (252)
+.++||++++. +|+++.+
T Consensus 97 v~~~P~~~lid~~G~i~~~ 115 (131)
T cd03009 97 IEGIPTLIILDADGEVVTT 115 (131)
T ss_pred CCCCCEEEEECCCCCEEcc
Confidence 99999999996 8988765
No 84
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.98 E-value=2.4e-09 Score=80.61 Aligned_cols=69 Identities=29% Similarity=0.448 Sum_probs=59.9
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHC--CCceEEEEeccC--------------------------CCCCCCCCcc
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKY--PATKFVKIISTD--------------------------CIPNYPDRNL 171 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky--~~vkFvkI~~~~--------------------------~~~~~~i~~l 171 (252)
++++||.||++||+.|+...+.|.++..++ ++++|+.|..+. ....|++.++
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRGL 98 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCcc
Confidence 469999999999999999999999999999 679999987654 2478999999
Q ss_pred cEEEEEE-CCeEEEEeec
Q 025454 172 PTVLVYN-NGAVKANYVG 188 (252)
Q Consensus 172 PTlliy~-~G~~v~~~vG 188 (252)
|+++++. +|+++.++.|
T Consensus 99 P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 99 PTTFLIDRDGRIRARHVG 116 (116)
T ss_pred ceEEEECCCCcEEEEecC
Confidence 9999985 7999887765
No 85
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.97 E-value=1.2e-09 Score=98.10 Aligned_cols=77 Identities=22% Similarity=0.314 Sum_probs=63.8
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHH----HCCC--ceEEEEecc---CCCCCCCCCcccEEEE
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELAR----KYPA--TKFVKIIST---DCIPNYPDRNLPTVLV 176 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~----ky~~--vkFvkI~~~---~~~~~~~i~~lPTlli 176 (252)
+..++...+..+ ..|+|.|||+||+.++.+.|+|++.|. +||+ +.+.+||++ .++.+|.|..+||+.+
T Consensus 2 t~~N~~~il~s~---elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKv 78 (375)
T KOG0912|consen 2 TSENIDSILDSN---ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKV 78 (375)
T ss_pred ccccHHHhhccc---eEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeee
Confidence 345555666554 499999999999999999999999886 4675 778888885 4679999999999999
Q ss_pred EECCeEEEE
Q 025454 177 YNNGAVKAN 185 (252)
Q Consensus 177 y~~G~~v~~ 185 (252)
|+||.+..+
T Consensus 79 frnG~~~~r 87 (375)
T KOG0912|consen 79 FRNGEMMKR 87 (375)
T ss_pred eeccchhhh
Confidence 999998763
No 86
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.97 E-value=5.4e-09 Score=83.51 Aligned_cols=80 Identities=10% Similarity=-0.011 Sum_probs=58.8
Q ss_pred hhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHH-HH--HHHHH-CCCceEEEEeccCCCC-----------CCCCCcc
Q 025454 107 GSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQC-LE--ELARK-YPATKFVKIISTDCIP-----------NYPDRNL 171 (252)
Q Consensus 107 ~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~-l~--~LA~k-y~~vkFvkI~~~~~~~-----------~~~i~~l 171 (252)
.+.+..+..+ +++|+|+||++||+.|+.|.+. |. ++++. +.+..++++|.++... .|++.++
T Consensus 5 ~eal~~Ak~~---~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~ 81 (124)
T cd02955 5 EEAFEKARRE---DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGW 81 (124)
T ss_pred HHHHHHHHHc---CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCC
Confidence 4445444443 3699999999999999999863 32 45554 3567888998875331 3689999
Q ss_pred cEEEEEE-CCeEEEEeecc
Q 025454 172 PTVLVYN-NGAVKANYVGL 189 (252)
Q Consensus 172 PTlliy~-~G~~v~~~vG~ 189 (252)
||++++. +|+++....++
T Consensus 82 Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 82 PLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred CEEEEECCCCCEEeeeeec
Confidence 9999995 69999887665
No 87
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.96 E-value=2.8e-09 Score=80.26 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=54.1
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---CCCCCCCcccEEEEEECCeEEE
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---IPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~~~~~i~~lPTlliy~~G~~v~ 184 (252)
.-|..|+++||+.|..+.+.+++|+..+|.++|..++.++. +.+|+|.++|||++ ||+.+.
T Consensus 14 v~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~~~ 77 (89)
T cd03026 14 INFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGELFG 77 (89)
T ss_pred EEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEEEE
Confidence 45777889999999999999999999999999999998654 58999999999975 898766
No 88
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.95 E-value=1.5e-09 Score=86.61 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=52.6
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC----CceEEEEeccC----------------------------CCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP----ATKFVKIISTD----------------------------CIPNY 166 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~----~vkFvkI~~~~----------------------------~~~~~ 166 (252)
+|++|||+||++||++|+.+.|.|.+++.+|. ++.++-|+.+. +...|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 45799999999999999999999999988765 35555554321 12459
Q ss_pred CCCcccEEEEEE-CCeEEEEe
Q 025454 167 PDRNLPTVLVYN-NGAVKANY 186 (252)
Q Consensus 167 ~i~~lPTlliy~-~G~~v~~~ 186 (252)
++.++||++++. +|+++.+.
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~ 116 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTN 116 (132)
T ss_pred CCCCCCEEEEECCCCCEEchh
Confidence 999999999996 78877644
No 89
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.93 E-value=5.8e-09 Score=86.24 Aligned_cols=83 Identities=22% Similarity=0.274 Sum_probs=67.7
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEeccC-------------------------CCCCCCCCccc
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIISTD-------------------------CIPNYPDRNLP 172 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~~-------------------------~~~~~~i~~lP 172 (252)
+++++|.||++||+.|+...+.|.+++++|++ ++|+.|..+. ....|++..+|
T Consensus 61 ~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~P 140 (173)
T PRK03147 61 GKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGPLP 140 (173)
T ss_pred CCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCCcC
Confidence 46899999999999999999999999999975 7888886431 13679999999
Q ss_pred EEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 173 TVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 173 Tlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+++++. +|+++..+.|. .+.+++..+|...
T Consensus 141 ~~~lid~~g~i~~~~~g~------~~~~~l~~~l~~~ 171 (173)
T PRK03147 141 TTFLIDKDGKVVKVITGE------MTEEQLEEYLEKI 171 (173)
T ss_pred eEEEECCCCcEEEEEeCC------CCHHHHHHHHHHh
Confidence 877775 79988887775 3578888888754
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.92 E-value=3e-09 Score=111.27 Aligned_cols=83 Identities=18% Similarity=0.173 Sum_probs=65.5
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEe-----cc-------------------------CCCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKII-----ST-------------------------DCIPNY 166 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~-----~~-------------------------~~~~~~ 166 (252)
++++|||+|||+||++|+...|.|.+|+++|++ +.|+.|. .. .....|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 468999999999999999999999999999976 5666663 10 012578
Q ss_pred CCCcccEEEEE-ECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 167 PDRNLPTVLVY-NNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 167 ~i~~lPTlliy-~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
++.++||+++| ++|+++.++.|.. ..+.|+.+|..
T Consensus 499 ~V~~iPt~ilid~~G~iv~~~~G~~------~~~~l~~~l~~ 534 (1057)
T PLN02919 499 GVSSWPTFAVVSPNGKLIAQLSGEG------HRKDLDDLVEA 534 (1057)
T ss_pred CCCccceEEEECCCCeEEEEEeccc------CHHHHHHHHHH
Confidence 99999999999 7999999998853 34555555544
No 91
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.92 E-value=3.2e-09 Score=87.17 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=52.0
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC---------CceEEEEeccC----------------------------
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP---------ATKFVKIISTD---------------------------- 161 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~---------~vkFvkI~~~~---------------------------- 161 (252)
++++|+|+|||+||++|+...|.|.++..++. ++.++-|+.+.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 45799999999999999999999999776442 36667664321
Q ss_pred CCCCCCCCcccEEEEEE-CCeEEEE
Q 025454 162 CIPNYPDRNLPTVLVYN-NGAVKAN 185 (252)
Q Consensus 162 ~~~~~~i~~lPTlliy~-~G~~v~~ 185 (252)
+...|++.++||++++. +|+++.+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~ 128 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAA 128 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEee
Confidence 11468899999999986 7888764
No 92
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.88 E-value=2.2e-08 Score=80.74 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=73.2
Q ss_pred cChhhHHHHHHcCCCCceEEEEEEcC--CCchhhhHHHHHHHHHHHCC-C-ceEEEEeccC---CCCCCCCCcccEEEEE
Q 025454 105 ISGSDFVREVSQAPPDVWVVVILYKD--GFAECGLLMQCLEELARKYP-A-TKFVKIISTD---CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 105 Is~~~f~~~V~~~~~~~~VVV~fya~--wc~~Ck~l~~~l~~LA~ky~-~-vkFvkI~~~~---~~~~~~i~~lPTlliy 177 (252)
++..++...+...+ ..||.|-.+ -++.+.-+.-+|.+|+++|+ . ++|++||.+. +..+|+|+++|||++|
T Consensus 22 ~~~~~~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~F 98 (132)
T PRK11509 22 VSESRLDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVF 98 (132)
T ss_pred cccccHHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEE
Confidence 33445555554433 455555432 57889999999999999998 3 8999999875 4589999999999999
Q ss_pred ECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 178 NNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 178 ~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+||+.+++++|+.+ .+++..+|.+.
T Consensus 99 kdGk~v~~i~G~~~------k~~l~~~I~~~ 123 (132)
T PRK11509 99 TGGNYRGVLNGIHP------WAELINLMRGL 123 (132)
T ss_pred ECCEEEEEEeCcCC------HHHHHHHHHHH
Confidence 99999999999753 57777777754
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.87 E-value=1.1e-08 Score=80.81 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=58.1
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc-----C-------------------------CCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST-----D-------------------------CIPNY 166 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~-----~-------------------------~~~~~ 166 (252)
++++|||.||+.||++|....|.|.++.++|.+ +.++-|... . +...|
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~~ 101 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRAY 101 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHHh
Confidence 347999999999999999999999999999974 777776431 0 01358
Q ss_pred CCCcccEEEEE-ECCeEEEEeecc
Q 025454 167 PDRNLPTVLVY-NNGAVKANYVGL 189 (252)
Q Consensus 167 ~i~~lPTlliy-~~G~~v~~~vG~ 189 (252)
++.++|+.+++ ++|+++..++|.
T Consensus 102 ~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 102 GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred CCCcCCeEEEECCCCcEEEEEecC
Confidence 99999999999 589999998874
No 94
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.86 E-value=9.6e-09 Score=80.25 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=53.1
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc------------------------CCCCCCCCCcccEEE
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST------------------------DCIPNYPDRNLPTVL 175 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~------------------------~~~~~~~i~~lPTll 175 (252)
++++||.||++||++|+.+.|.|..++.++. +-.+.++.. .+...|++.++||++
T Consensus 20 ~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~~ 98 (123)
T cd03011 20 GKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAIV 98 (123)
T ss_pred CCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEEE
Confidence 3689999999999999999999999988743 211221111 133679999999999
Q ss_pred EEECCeEEEEeeccc
Q 025454 176 VYNNGAVKANYVGLR 190 (252)
Q Consensus 176 iy~~G~~v~~~vG~~ 190 (252)
++.+|.++..+.|+.
T Consensus 99 vid~~gi~~~~~g~~ 113 (123)
T cd03011 99 IVDPGGIVFVTTGVT 113 (123)
T ss_pred EEcCCCeEEEEeccC
Confidence 997655888888864
No 95
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.84 E-value=7.8e-09 Score=79.68 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=47.8
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEecc---C---C-----------------CCCCCCCcccEEE
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIIST---D---C-----------------IPNYPDRNLPTVL 175 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~---~---~-----------------~~~~~i~~lPTll 175 (252)
+++|||+||++||++|+.+.|.|.++++++.. +.++.+... . . ...|++.++|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 57999999999999999999999999988854 677755211 0 0 1356677777777
Q ss_pred EEE-CCeEEE
Q 025454 176 VYN-NGAVKA 184 (252)
Q Consensus 176 iy~-~G~~v~ 184 (252)
++. +|+++.
T Consensus 101 vid~~G~v~~ 110 (114)
T cd02967 101 LLDEAGVIAA 110 (114)
T ss_pred EECCCCeEEe
Confidence 765 576654
No 96
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.83 E-value=1e-08 Score=76.65 Aligned_cols=62 Identities=21% Similarity=0.379 Sum_probs=49.5
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCC---CceEEEEeccC----------------------------CCCCCCC
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYP---ATKFVKIISTD----------------------------CIPNYPD 168 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~---~vkFvkI~~~~----------------------------~~~~~~i 168 (252)
|++++|.||++||++|+...|.|.++.++|+ .+.|+-|..+. +...|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4799999999999999999999999999999 58888885431 1147899
Q ss_pred CcccEEEEEEC-Ce
Q 025454 169 RNLPTVLVYNN-GA 181 (252)
Q Consensus 169 ~~lPTlliy~~-G~ 181 (252)
.++|+++++.. |+
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 99999998864 54
No 97
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6e-09 Score=97.70 Aligned_cols=82 Identities=18% Similarity=0.234 Sum_probs=68.7
Q ss_pred cCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCccc
Q 025454 97 SRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLP 172 (252)
Q Consensus 97 ~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lP 172 (252)
...|....++...|...+.... ..++|+||+|||++|+.+.|.+.+++..+.+ +++..|+++. +...|+|.++|
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~--~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 26 LASGVVSELTLDSFFDFLLKDD--SPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred ccccchhhhhccccHHHhhccC--CceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCc
Confidence 3455666666666766666544 5899999999999999999999999999887 8888898864 45899999999
Q ss_pred EEEEEECC
Q 025454 173 TVLVYNNG 180 (252)
Q Consensus 173 Tlliy~~G 180 (252)
|+.+|..|
T Consensus 104 tl~~f~~~ 111 (383)
T KOG0191|consen 104 TLKVFRPG 111 (383)
T ss_pred EEEEEcCC
Confidence 99999999
No 98
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.70 E-value=2.9e-08 Score=96.29 Aligned_cols=105 Identities=16% Similarity=0.192 Sum_probs=82.9
Q ss_pred cCCCce-EEcChh-hHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHH---HHHHHCCCceEEEEeccCC-------CC
Q 025454 97 SRFGSV-MPISGS-DFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLE---ELARKYPATKFVKIISTDC-------IP 164 (252)
Q Consensus 97 ~~fG~v-~eIs~~-~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~---~LA~ky~~vkFvkI~~~~~-------~~ 164 (252)
..++.. +.++.. +..+.+.++ ++++|+|+|||+||-.||.+.+..= +.+.+.+++.+.++|.+.- -+
T Consensus 450 ~~~~~~~q~~s~~~~L~~~la~~-~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk 528 (569)
T COG4232 450 VSHGEFWQPISPLAELDQALAEA-KAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLK 528 (569)
T ss_pred CccchhhhccCCHHHHHHHHHhC-CCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHH
Confidence 345665 667665 777777766 4479999999999999999998753 4567788999999998642 37
Q ss_pred CCCCCcccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 165 NYPDRNLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 165 ~~~i~~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
+|++-++|++++|. +|+....+.|+ ++.+.++.+|.+.
T Consensus 529 ~~~~~G~P~~~ff~~~g~e~~~l~gf------~~a~~~~~~l~~~ 567 (569)
T COG4232 529 RLGVFGVPTYLFFGPQGSEPEILTGF------LTADAFLEHLERA 567 (569)
T ss_pred HcCCCCCCEEEEECCCCCcCcCCcce------ecHHHHHHHHHHh
Confidence 89999999999999 78877777776 5678888888764
No 99
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.9e-08 Score=86.70 Aligned_cols=95 Identities=17% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCceEEcC-hhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc---CCCCCCCC---
Q 025454 98 RFGSVMPIS-GSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST---DCIPNYPD--- 168 (252)
Q Consensus 98 ~fG~v~eIs-~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~---~~~~~~~i--- 168 (252)
+-|.+.-.+ .+.+..++.. .+.+..+|.||+.|.+.|+...|++.+|+.+|.. .+|.+||.. +.+.+|+|
T Consensus 122 gpe~ikyf~~~q~~deel~r-nk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s 200 (265)
T KOG0914|consen 122 GPETIKYFTNMQLEDEELDR-NKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLS 200 (265)
T ss_pred CchheeeecchhhHHHHhcc-CCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccC
Confidence 455677774 4555555554 4668889999999999999999999999999964 999999975 44567766
Q ss_pred ---CcccEEEEEECCeEEEEeecccccC
Q 025454 169 ---RNLPTVLVYNNGAVKANYVGLRSFG 193 (252)
Q Consensus 169 ---~~lPTlliy~~G~~v~~~vG~~~~G 193 (252)
+.+||+++|.+|+.+.+.--+..-|
T Consensus 201 ~~srQLPT~ilFq~gkE~~RrP~vd~~g 228 (265)
T KOG0914|consen 201 PGSRQLPTYILFQKGKEVSRRPDVDVKG 228 (265)
T ss_pred cccccCCeEEEEccchhhhcCccccccC
Confidence 5799999999999998876554333
No 100
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.68 E-value=1.4e-07 Score=80.04 Aligned_cols=78 Identities=17% Similarity=0.217 Sum_probs=59.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC----------------CCCCCCC--CcccEEEEE-ECCeEE-
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD----------------CIPNYPD--RNLPTVLVY-NNGAVK- 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~----------------~~~~~~i--~~lPTlliy-~~G~~v- 183 (252)
||.||++||++|+...|.|.+++++|. +.++-|..+. ....|++ .++||.+++ ++|+.+
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 677999999999999999999999995 6776665431 1135774 699988888 789886
Q ss_pred EEeecccccCCCCCHHHHHHHHHhc
Q 025454 184 ANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 184 ~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
..++|.. +.++|+..+.+.
T Consensus 152 ~~~~G~~------~~~~L~~~I~~l 170 (181)
T PRK13728 152 PLLQGAT------DAAGFMARMDTV 170 (181)
T ss_pred EEEECCC------CHHHHHHHHHHH
Confidence 5788864 466777766654
No 101
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.67 E-value=2e-08 Score=74.52 Aligned_cols=69 Identities=26% Similarity=0.401 Sum_probs=59.2
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEecc----CCCCCCC--CCcccEEEEEECCeEEEEeec
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIIST----DCIPNYP--DRNLPTVLVYNNGAVKANYVG 188 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~----~~~~~~~--i~~lPTlliy~~G~~v~~~vG 188 (252)
+.+++|+||++||++|+.+.|.+.++++.++. +.|+.++.. .....|+ +..+|+++++.+|..+..+.+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEVDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchhhhhhh
Confidence 46899999999999999999999999999985 999999885 2346788 899999999999987665554
No 102
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.67 E-value=7.5e-08 Score=77.57 Aligned_cols=83 Identities=25% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCceEEEEEEcC-CCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------CCCCCCCC--
Q 025454 119 PDVWVVVILYKD-GFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------CIPNYPDR-- 169 (252)
Q Consensus 119 ~~~~VVV~fya~-wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------~~~~~~i~-- 169 (252)
+|+++||+||+. ||++|+.-.|.|.+|+++|. ++.|+-|.... +...|++.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 457899999999 99999999999999998864 48888774321 11468877
Q ss_pred -------cccEE-EEEECCeEEEEeecccccCCCCCHHHHHHHH
Q 025454 170 -------NLPTV-LVYNNGAVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 170 -------~lPTl-liy~~G~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
.+|++ +|-++|+++....|... + +..+++.+|
T Consensus 107 ~~~~~~~~~P~~~lId~~G~V~~~~~g~~~-~---~~~~~~~~l 146 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGKVVYRHVGPDP-D---EESDLEAVL 146 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSBEEEEEESSBT-T---SHHSHHHHH
T ss_pred cccccCCeecEEEEEECCCEEEEEEeCCCC-C---CCCChhhcC
Confidence 99975 55678999999998753 1 466666655
No 103
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=6.1e-08 Score=90.92 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=70.1
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC---CceEEEEecc---CCCCCCCCCcccEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP---ATKFVKIIST---DCIPNYPDRNLPTV 174 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~---~vkFvkI~~~---~~~~~~~i~~lPTl 174 (252)
.|.+++..+|...+.+.. ...+|.||+|||++|+.|.|.+.+++..+. .+++.+++++ .....+.++++||+
T Consensus 145 ~v~~l~~~~~~~~~~~~~--~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~ 222 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSD--ADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTL 222 (383)
T ss_pred ceEEccccchhhhhhccC--cceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceE
Confidence 499999999999888765 468899999999999999999999998774 4888888876 34588999999999
Q ss_pred EEEECCeE
Q 025454 175 LVYNNGAV 182 (252)
Q Consensus 175 liy~~G~~ 182 (252)
++|++|..
T Consensus 223 ~~f~~~~~ 230 (383)
T KOG0191|consen 223 KLFPPGEE 230 (383)
T ss_pred EEecCCCc
Confidence 99999987
No 104
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.62 E-value=2.1e-07 Score=72.49 Aligned_cols=82 Identities=17% Similarity=0.260 Sum_probs=61.0
Q ss_pred CceEEEEEEcCCCchhhhHHH-HHH--HHHHHCC-CceEEEEeccC-----CCCCCCCCcccEEEEEE--CCeEEEEeec
Q 025454 120 DVWVVVILYKDGFAECGLLMQ-CLE--ELARKYP-ATKFVKIISTD-----CIPNYPDRNLPTVLVYN--NGAVKANYVG 188 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~-~l~--~LA~ky~-~vkFvkI~~~~-----~~~~~~i~~lPTlliy~--~G~~v~~~vG 188 (252)
+++++|+|+++||+.|+.|.. .|. .+.+... ..-+++++.+. ....|++.++||++++. +|+++.++.|
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G 96 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSG 96 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcC
Confidence 479999999999999999975 342 2333222 34566666653 35789999999999996 6999999998
Q ss_pred ccccCCCCCHHHHHHHHHh
Q 025454 189 LRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 189 ~~~~G~~~~~e~lE~~L~~ 207 (252)
. .+++++...|.+
T Consensus 97 ~------~~~~~f~~~L~~ 109 (114)
T cd02958 97 N------ITPEDLLSQLIE 109 (114)
T ss_pred C------CCHHHHHHHHHH
Confidence 6 457777777665
No 105
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.57 E-value=2.8e-07 Score=78.43 Aligned_cols=81 Identities=20% Similarity=0.302 Sum_probs=58.8
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc-----------------------CCCCCCCCCcccEEE
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST-----------------------DCIPNYPDRNLPTVL 175 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~-----------------------~~~~~~~i~~lPTll 175 (252)
+++++||.||++||++|+.+.|.+.++.+++ ++.++-|..+ +....|++..+|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4578999999999999999999999998765 4455544311 122578999999766
Q ss_pred EE-ECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 176 VY-NNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 176 iy-~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
++ ++|+++.+ |. .-+.+.++.+|..
T Consensus 152 lID~~G~I~~~--g~-----~~~~~~le~ll~~ 177 (189)
T TIGR02661 152 LLDQDGKIRAK--GL-----TNTREHLESLLEA 177 (189)
T ss_pred EECCCCeEEEc--cC-----CCCHHHHHHHHHH
Confidence 54 68988764 32 1246778888874
No 106
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.47 E-value=6e-07 Score=59.23 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=49.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCC------CCCCCCcccEEEEEECC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCI------PNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~------~~~~i~~lPTlliy~~G 180 (252)
|+.||++||+.|+.+.+.+.+++...+++.|+.++.+... ..+++..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999999666677999999887543 37899999999999988
No 107
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.43 E-value=6.2e-07 Score=72.22 Aligned_cols=70 Identities=14% Similarity=0.245 Sum_probs=47.3
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHH---HHHHCCCceEE--EEeccCC---CCCCCCCcccEEEEE-ECCeEEEEeeccc
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEE---LARKYPATKFV--KIISTDC---IPNYPDRNLPTVLVY-NNGAVKANYVGLR 190 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~---LA~ky~~vkFv--kI~~~~~---~~~~~i~~lPTlliy-~~G~~v~~~vG~~ 190 (252)
+++|+|.||++||++|+.|...+-. +++.. .-.|+ +++.+.. ....+ ..+||++|| .+|+++.+++|-.
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l-~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~vi~~i~Gy~ 100 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLA-QEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLTVRADITGRY 100 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHH-HhCeEEEEEEeccCCCCcCccC-cccCeEEEECCCCCCcccccccc
Confidence 4799999999999999999976421 22211 11344 5554311 11233 689999999 5799999998864
Q ss_pred c
Q 025454 191 S 191 (252)
Q Consensus 191 ~ 191 (252)
+
T Consensus 101 ~ 101 (130)
T cd02960 101 S 101 (130)
T ss_pred c
Confidence 3
No 108
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.43 E-value=1.8e-06 Score=76.23 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=36.1
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEec
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIS 159 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~ 159 (252)
+|++|||.||++||++|+...|.|.+|.++|.+ +.++-|+.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~ 140 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPC 140 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEec
Confidence 347999999999999999999999999999964 78887764
No 109
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.41 E-value=1.4e-06 Score=74.94 Aligned_cols=41 Identities=2% Similarity=0.009 Sum_probs=36.0
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEec
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIS 159 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~ 159 (252)
+|++|||+|||+||++|+...|.|.+|.++|.+ +.|+-|+.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~ 80 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPT 80 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecc
Confidence 357999999999999999999999999999964 78888853
No 110
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.41 E-value=1e-06 Score=61.76 Aligned_cols=65 Identities=18% Similarity=0.289 Sum_probs=48.7
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEEEEeecccccCCCC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRC 196 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~ 196 (252)
|..|+++||++|+.+.+.|.. .++.|..++.+.. ...+++.++|||+++ |+. ++|+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~---~~g~------- 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI---IVGF------- 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE---EeeC-------
Confidence 567999999999999988876 3578888877542 245899999999985 654 5553
Q ss_pred CHHHHHHHH
Q 025454 197 TPEGVALVL 205 (252)
Q Consensus 197 ~~e~lE~~L 205 (252)
+.+.|..+|
T Consensus 65 ~~~~i~~~i 73 (74)
T TIGR02196 65 DPEKLDQLL 73 (74)
T ss_pred CHHHHHHHh
Confidence 456777665
No 111
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.39 E-value=2.4e-06 Score=70.94 Aligned_cols=87 Identities=18% Similarity=0.225 Sum_probs=62.6
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccCC--------------------------------CCC
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTDC--------------------------------IPN 165 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~~--------------------------------~~~ 165 (252)
+++|||.||++||+.|....+.|.+|..+|+ ++.|+-|..+.. ...
T Consensus 25 ~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~ 104 (171)
T cd02969 25 GKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAKA 104 (171)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHHH
Confidence 4689999999999999999999999999997 488888854210 136
Q ss_pred CCCCcccEEEEEE-CCeEEEEeecccc-c-C--CCCCHHHHHHHHHh
Q 025454 166 YPDRNLPTVLVYN-NGAVKANYVGLRS-F-G--RRCTPEGVALVLCQ 207 (252)
Q Consensus 166 ~~i~~lPTlliy~-~G~~v~~~vG~~~-~-G--~~~~~e~lE~~L~~ 207 (252)
|++..+|+++|+. +|+++.... ... . + ...+...+...|..
T Consensus 105 ~~v~~~P~~~lid~~G~v~~~~~-~~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 105 YGAACTPDFFLFDPDGKLVYRGR-IDDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred cCCCcCCcEEEECCCCeEEEeec-ccCCcccccccccHHHHHHHHHH
Confidence 8899999988884 788775421 111 1 1 23455666666654
No 112
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=1.6e-07 Score=81.27 Aligned_cols=86 Identities=15% Similarity=0.175 Sum_probs=73.5
Q ss_pred ceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEE
Q 025454 101 SVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLV 176 (252)
Q Consensus 101 ~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlli 176 (252)
.|..| ..++| ..+ +++.+|+|||++||.+|+.|..++..+++..+.+.|++++++. +...+.+.++|++++
T Consensus 2 ~v~~i~~~~~f---~~~--~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~ 76 (227)
T KOG0911|consen 2 TVQFIVFQEQF---LDQ--KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVF 76 (227)
T ss_pred CceeehhHHHH---HHh--ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeee
Confidence 35666 45677 333 4578999999999999999999999999999899999999875 458899999999999
Q ss_pred EECCeEEEEeecccc
Q 025454 177 YNNGAVKANYVGLRS 191 (252)
Q Consensus 177 y~~G~~v~~~vG~~~ 191 (252)
+.+|+.+.++.|...
T Consensus 77 ~~~~~~v~~l~~~~~ 91 (227)
T KOG0911|consen 77 FFLGEKVDRLSGADP 91 (227)
T ss_pred eecchhhhhhhccCc
Confidence 999999999998764
No 113
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=2.6e-07 Score=89.22 Aligned_cols=80 Identities=11% Similarity=0.229 Sum_probs=66.5
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC---CC-ceEEEEeccC-----CCCCCCCCc
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY---PA-TKFVKIISTD-----CIPNYPDRN 170 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky---~~-vkFvkI~~~~-----~~~~~~i~~ 170 (252)
-.|.+++.++|...|.... +.-+|.||++|||+|+.+.|.|.++|+.. +. +++..||+.+ +...|+|+.
T Consensus 39 D~ii~Ld~~tf~~~v~~~~--~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSR--KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCeEEeehhhhHHHhcccc--hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 3699999999999998765 45789999999999999999999999854 33 6777777642 358999999
Q ss_pred ccEEEEEECCe
Q 025454 171 LPTVLVYNNGA 181 (252)
Q Consensus 171 lPTlliy~~G~ 181 (252)
+|||..|.-+-
T Consensus 117 ~Ptlryf~~~~ 127 (606)
T KOG1731|consen 117 YPTLRYFPPDS 127 (606)
T ss_pred CceeeecCCcc
Confidence 99999997653
No 114
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.32 E-value=6.1e-06 Score=66.32 Aligned_cols=80 Identities=11% Similarity=0.282 Sum_probs=48.0
Q ss_pred hHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---CCC---CCCCCCcccEEEEEE-CCe
Q 025454 109 DFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---DCI---PNYPDRNLPTVLVYN-NGA 181 (252)
Q Consensus 109 ~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---~~~---~~~~i~~lPTlliy~-~G~ 181 (252)
+....+..-.+ ..-++-|..+|||.|+..-|.|.++|+..|.+.+--+..+ +.. ...+.+++|||+++. +|+
T Consensus 31 ~~~~~l~~~~~-~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 31 EQIEKLKSIQK-PYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHT--S--EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHhcCC-CcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 33444444432 4678889999999999999999999999998655444322 222 226789999999995 589
Q ss_pred EEEEeecc
Q 025454 182 VKANYVGL 189 (252)
Q Consensus 182 ~v~~~vG~ 189 (252)
.++++...
T Consensus 110 ~lg~wger 117 (129)
T PF14595_consen 110 ELGRWGER 117 (129)
T ss_dssp EEEEEESS
T ss_pred EeEEEcCC
Confidence 98888654
No 115
>PLN02412 probable glutathione peroxidase
Probab=98.31 E-value=4.5e-06 Score=69.58 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=34.9
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEec
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIS 159 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~ 159 (252)
+++|||+||++||++|+.-.|.|.++.++|.+ +.++-|++
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 46899999999999999999999999999974 77777753
No 116
>smart00594 UAS UAS domain.
Probab=98.27 E-value=2.9e-06 Score=67.12 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=57.5
Q ss_pred hhHHHHHHcCC-CCceEEEEEEcCCCchhhhHHHH-HH--HHHHHCC-CceEEEEeccC-----CCCCCCCCcccEEEEE
Q 025454 108 SDFVREVSQAP-PDVWVVVILYKDGFAECGLLMQC-LE--ELARKYP-ATKFVKIISTD-----CIPNYPDRNLPTVLVY 177 (252)
Q Consensus 108 ~~f~~~V~~~~-~~~~VVV~fya~wc~~Ck~l~~~-l~--~LA~ky~-~vkFvkI~~~~-----~~~~~~i~~lPTlliy 177 (252)
..|.+++..+. .+++++|+|+++||+.|+.|... |. .+.+... +.-+..++.+. +...|++.++|+++++
T Consensus 14 gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l 93 (122)
T smart00594 14 GSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIV 93 (122)
T ss_pred CCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEE
Confidence 34444444332 24799999999999999999864 22 1222222 24455566542 4588999999999999
Q ss_pred E-CC-e----EEEEeecccccCCCCCHHHHHHHH
Q 025454 178 N-NG-A----VKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 178 ~-~G-~----~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
. +| . ++.++.| ..++++|...|
T Consensus 94 ~~~~g~~~~~~~~~~~G------~~~~~~l~~~l 121 (122)
T smart00594 94 DPRTGQRVIEWVGVVEG------EISPEELMTFL 121 (122)
T ss_pred ecCCCceeEEEeccccC------CCCHHHHHHhh
Confidence 4 44 2 3444444 34567776655
No 117
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.26 E-value=4.2e-06 Score=68.36 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEe
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKII 158 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~ 158 (252)
+|++|||.||++||+ |+.-.|.|.+|.++|.. +.|+-|.
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~ 61 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFP 61 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEec
Confidence 357999999999999 99999999999999964 7777774
No 118
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.20 E-value=8.4e-07 Score=65.16 Aligned_cols=59 Identities=19% Similarity=0.167 Sum_probs=42.0
Q ss_pred CceEEEEEEcCCCchhhhHHHHH---HHHHH-HCCCceEEEEeccCCC--CCCCCCcccEEEEEE
Q 025454 120 DVWVVVILYKDGFAECGLLMQCL---EELAR-KYPATKFVKIISTDCI--PNYPDRNLPTVLVYN 178 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l---~~LA~-ky~~vkFvkI~~~~~~--~~~~i~~lPTlliy~ 178 (252)
+++|+|.|+++||+.|+.|...+ ..+.+ --.+..+++++.+.-. ..+...++||++|+.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 37999999999999999999877 33443 2245788888876321 111125699999974
No 119
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.19 E-value=8.1e-06 Score=69.50 Aligned_cols=82 Identities=11% Similarity=0.096 Sum_probs=57.3
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHH-CCC-----ceEEEEe-----------------------------cc-CC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARK-YPA-----TKFVKII-----------------------------ST-DC 162 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~k-y~~-----vkFvkI~-----------------------------~~-~~ 162 (252)
+|+.+||+|||.||++|+.-.|.+..|+.+ +|- +..+.++ .+ ..
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 468999999999999999999999999864 332 1222221 11 01
Q ss_pred CCCCCCCcccEE--EEEECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 163 IPNYPDRNLPTV--LVYNNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 163 ~~~~~i~~lPTl--liy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
...|++.++|+. +|=++|+++..+.|. ++.++++.++.
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~~~~G~------l~~ee~e~~~~ 177 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKFVKEGA------LSDSDIQTVIS 177 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEEEEeCC------CCHHHHHHHHH
Confidence 247889999744 555789999999996 34566665443
No 120
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.16 E-value=9.6e-06 Score=57.77 Aligned_cols=55 Identities=18% Similarity=0.313 Sum_probs=39.7
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---CC-----CCCCCcccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---IP-----NYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~~-----~~~i~~lPTlliy~~G~~v~ 184 (252)
|+.||++||++|+.+.+.|.++. +.|-.++.++- .. ++++.++|+| ++.+|..+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~-----~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l~ 64 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG-----AAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFLT 64 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC-----CceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEec
Confidence 56799999999999999998764 34445555422 12 2589999997 578886543
No 121
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.12 E-value=2.4e-05 Score=63.85 Aligned_cols=83 Identities=16% Similarity=0.128 Sum_probs=60.0
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEecc-------C----C---C-C----CCCC---------
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIIST-------D----C---I-P----NYPD--------- 168 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~-------~----~---~-~----~~~i--------- 168 (252)
+|++|||.||++||++|+.-.|.|.++.++|. ++.|+-|++. + . + . .|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~~~ 100 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKILGS 100 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecCCC
Confidence 35789999999999999999999999999996 4788877631 0 0 0 1 1222
Q ss_pred -------------Cccc-----EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 169 -------------RNLP-----TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 169 -------------~~lP-----Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.++| |++|=++|+++..+.|. .+.++|+..|.+
T Consensus 101 ~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~------~~~~~l~~~i~~ 151 (153)
T TIGR02540 101 EAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPE------EPVEEIRPEITA 151 (153)
T ss_pred CCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCC------CCHHHHHHHHHH
Confidence 1367 57777889999888775 346677766653
No 122
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.11 E-value=1.2e-05 Score=63.76 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=53.1
Q ss_pred hhhHHHHHHc-CCCCceEEEEEEc-------CCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC--------C----CCC
Q 025454 107 GSDFVREVSQ-APPDVWVVVILYK-------DGFAECGLLMQCLEELARKYPA-TKFVKIISTD--------C----IPN 165 (252)
Q Consensus 107 ~~~f~~~V~~-~~~~~~VVV~fya-------~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~--------~----~~~ 165 (252)
-++|.+.|.. ..++.+++|.|++ +|||.|....|++...-...|. ..|+.+.+.. . .+.
T Consensus 5 y~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 5 YDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcce
Confidence 3567777765 2244788999985 5999999999999998777764 8888886521 1 247
Q ss_pred CCCCcccEEEEEECCeEEEEeec
Q 025454 166 YPDRNLPTVLVYNNGAVKANYVG 188 (252)
Q Consensus 166 ~~i~~lPTlliy~~G~~v~~~vG 188 (252)
+.++++|||+-|..| .++++
T Consensus 85 ~~l~~IPTLi~~~~~---~rL~e 104 (119)
T PF06110_consen 85 LKLKGIPTLIRWETG---ERLVE 104 (119)
T ss_dssp C---SSSEEEECTSS----EEEH
T ss_pred eeeeecceEEEECCC---Cccch
Confidence 999999999999887 44544
No 123
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.05 E-value=2.2e-05 Score=57.93 Aligned_cols=70 Identities=14% Similarity=0.157 Sum_probs=52.7
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-------CC--CCCCCCcccEEEEEECCeEEEEeecccccCC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-------CI--PNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-------~~--~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~ 194 (252)
|+.|+.+||+.|+.....|++|+.++.++.|..++... +. ..++...+|+++ .+|+.++ |+
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~ig---g~----- 72 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHIG---GC----- 72 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEEc---CH-----
Confidence 67899999999999999999999988888888887653 21 234568999975 5887653 32
Q ss_pred CCCHHHHHHHHHh
Q 025454 195 RCTPEGVALVLCQ 207 (252)
Q Consensus 195 ~~~~e~lE~~L~~ 207 (252)
++|..++..
T Consensus 73 ----~~~~~~~~~ 81 (85)
T PRK11200 73 ----TDFEAYVKE 81 (85)
T ss_pred ----HHHHHHHHH
Confidence 556666654
No 124
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.04 E-value=3.1e-05 Score=65.40 Aligned_cols=39 Identities=13% Similarity=0.069 Sum_probs=32.0
Q ss_pred Cce-EEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEe
Q 025454 120 DVW-VVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKII 158 (252)
Q Consensus 120 ~~~-VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~ 158 (252)
|++ ||+.+||+||++|+.-.|.|.++.++|.+ +.|+-|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 344 44566999999999999999999999864 7888875
No 125
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.02 E-value=2e-05 Score=62.62 Aligned_cols=71 Identities=13% Similarity=0.222 Sum_probs=55.5
Q ss_pred CceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------CCCCCCCCcc-
Q 025454 120 DVWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------CIPNYPDRNL- 171 (252)
Q Consensus 120 ~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------~~~~~~i~~l- 171 (252)
|+++||.|| +.||+.|....+.|.++..++. ++.|+-|..+. ....|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 102 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGEK 102 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCcccc
Confidence 468999999 5899999999999999998875 47777774321 1246788877
Q ss_pred --------cEEEEEE-CCeEEEEeeccc
Q 025454 172 --------PTVLVYN-NGAVKANYVGLR 190 (252)
Q Consensus 172 --------PTlliy~-~G~~v~~~vG~~ 190 (252)
|+.+++. +|+++..+.|..
T Consensus 103 ~~~~~~~~p~~~lid~~G~v~~~~~g~~ 130 (140)
T cd03017 103 KKKYMGIERSTFLIDPDGKIVKVWRKVK 130 (140)
T ss_pred ccccCCcceeEEEECCCCEEEEEEecCC
Confidence 8888885 699999998874
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.98 E-value=9.7e-06 Score=58.81 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=43.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC--------CCCCCCCCcccEEEEEECCeEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD--------CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~--------~~~~~~i~~lPTlliy~~G~~v 183 (252)
|+.|+++||++|+.+.+.|.++.-. +...++.|+... +...+++.++|++ |.+|+.+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~~i 65 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGKFI 65 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5789999999999999999998722 236777776542 2355788999997 5688764
No 127
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=97.97 E-value=2.9e-05 Score=62.23 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=54.7
Q ss_pred CceEEEEEEcCC-CchhhhHHHHHHHHHHHCCCceEEEEeccCC--------------------------CCCCCCCc--
Q 025454 120 DVWVVVILYKDG-FAECGLLMQCLEELARKYPATKFVKIISTDC--------------------------IPNYPDRN-- 170 (252)
Q Consensus 120 ~~~VVV~fya~w-c~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~--------------------------~~~~~i~~-- 170 (252)
|++|||.||+.| |++|+.-.+.|.++.++|+++.|+-|..+.. ...|++..
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv~~~~ 105 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGVLIKD 105 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCCeecc
Confidence 468999999998 6999999999999999999999998865310 02344432
Q ss_pred ----ccEEEEE-ECCeEEEEeeccc
Q 025454 171 ----LPTVLVY-NNGAVKANYVGLR 190 (252)
Q Consensus 171 ----lPTlliy-~~G~~v~~~vG~~ 190 (252)
.|+.+++ .+|.++...+|..
T Consensus 106 ~~~~~~~~~iid~~G~I~~~~~~~~ 130 (143)
T cd03014 106 LGLLARAVFVIDENGKVIYVELVPE 130 (143)
T ss_pred CCccceEEEEEcCCCeEEEEEECCC
Confidence 5776766 4899999888763
No 128
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.94 E-value=6.3e-05 Score=62.65 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=35.6
Q ss_pred CceEEEEEEcCC-CchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 120 DVWVVVILYKDG-FAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 120 ~~~VVV~fya~w-c~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
|++|||+||+.| |++|..-.+.|.+++.++.++.++-|..
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~ 84 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISA 84 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 468999999999 9999999999999999987788887743
No 129
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.94 E-value=4.5e-05 Score=66.42 Aligned_cols=62 Identities=15% Similarity=0.224 Sum_probs=49.5
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEecc------------CCCCCCCCCcccEEEEEECCe
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIIST------------DCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~------------~~~~~~~i~~lPTlliy~~G~ 181 (252)
+.+-++.||.+.|+.|+.+.|+|..++.+|.= |..+.+|.. ..++.|+|..+|++++..-+.
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 35889999999999999999999999999942 555555532 123679999999998887644
No 130
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=6.5e-05 Score=59.28 Aligned_cols=73 Identities=14% Similarity=0.218 Sum_probs=56.8
Q ss_pred hhhHHHHHHcCCCCceEEEEEEc--------CCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCCC----------CCCC
Q 025454 107 GSDFVREVSQAPPDVWVVVILYK--------DGFAECGLLMQCLEELARKYPA-TKFVKIISTDCI----------PNYP 167 (252)
Q Consensus 107 ~~~f~~~V~~~~~~~~VVV~fya--------~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~~----------~~~~ 167 (252)
.+.|.+.+.+..+++.++|.|++ +|||.|.+..|.+...-+..|. ++|+.+.+.+-+ ..++
T Consensus 12 ~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 12 YESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCC
Confidence 36677777666566679999985 6999999999999998887776 999999765321 3334
Q ss_pred C-CcccEEEEEEC
Q 025454 168 D-RNLPTVLVYNN 179 (252)
Q Consensus 168 i-~~lPTlliy~~ 179 (252)
+ .++|||+=|.+
T Consensus 92 ~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 92 ILTAVPTLLRWKR 104 (128)
T ss_pred ceeecceeeEEcC
Confidence 4 89999999986
No 131
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.85 E-value=3.5e-05 Score=59.72 Aligned_cols=65 Identities=22% Similarity=0.353 Sum_probs=50.7
Q ss_pred CceEEEEEEcC-CCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------CCCCCCCC---
Q 025454 120 DVWVVVILYKD-GFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------CIPNYPDR--- 169 (252)
Q Consensus 120 ~~~VVV~fya~-wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------~~~~~~i~--- 169 (252)
++++||.||+. ||+.|+...+.|.++..+|+ ++.|+-|..+. ....|++.
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 104 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIEDEK 104 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEETT
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcccc
Confidence 47999999999 99999999999999999887 68888885431 11457777
Q ss_pred ---cccEEEEEEC-CeEEE
Q 025454 170 ---NLPTVLVYNN-GAVKA 184 (252)
Q Consensus 170 ---~lPTlliy~~-G~~v~ 184 (252)
.+|+++|+.. |.++.
T Consensus 105 ~~~~~p~~~lid~~g~I~~ 123 (124)
T PF00578_consen 105 DTLALPAVFLIDPDGKIRY 123 (124)
T ss_dssp TSEESEEEEEEETTSBEEE
T ss_pred CCceEeEEEEECCCCEEEe
Confidence 8888877754 55543
No 132
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.82 E-value=0.00015 Score=60.40 Aligned_cols=86 Identities=16% Similarity=0.267 Sum_probs=60.1
Q ss_pred CceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC-------------------C------------CCC
Q 025454 120 DVWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD-------------------C------------IPN 165 (252)
Q Consensus 120 ~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~-------------------~------------~~~ 165 (252)
|++|||.|| +.||+.|....+.|.+++.+|. ++.++-|..+. . ...
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~~ 108 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISRD 108 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHHH
Confidence 468999999 8999999999999999999885 37776663211 0 135
Q ss_pred CCCC------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 166 YPDR------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 166 ~~i~------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
|++. .+|+.+|+. +|.++..+++....+. ..+++...|..
T Consensus 109 ~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~--~~~~il~~l~~ 155 (173)
T cd03015 109 YGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGR--SVDETLRVLDA 155 (173)
T ss_pred hCCccccCCceeeEEEEECCCCeEEEEEecCCCCCC--CHHHHHHHHHH
Confidence 6665 567777665 7999988887644432 34555555543
No 133
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.82 E-value=0.0001 Score=62.59 Aligned_cols=85 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred CceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC----------------------------CCCCCCC
Q 025454 120 DVWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD----------------------------CIPNYPD 168 (252)
Q Consensus 120 ~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~----------------------------~~~~~~i 168 (252)
|++|||.|| +.||+.|..-.+.|.++..+|. ++.++-|..+. +...|++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~gv 110 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFGV 110 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhCC
Confidence 468999999 9999999999999999888874 46666654221 1135666
Q ss_pred C------cccEEEEE-ECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 169 R------NLPTVLVY-NNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 169 ~------~lPTlliy-~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
. ..|+.+|+ .+|.++..+++....+. ..+++...|.
T Consensus 111 ~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~--~~~~ll~~l~ 153 (187)
T TIGR03137 111 LIEEAGLADRGTFVIDPEGVIQAVEITDNGIGR--DASELLRKIK 153 (187)
T ss_pred cccCCCceeeEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH
Confidence 5 35866666 68999988775433332 4566655553
No 134
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.79 E-value=0.00013 Score=52.95 Aligned_cols=72 Identities=28% Similarity=0.411 Sum_probs=51.0
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC--CCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHH
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC--IPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVA 202 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~--~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE 202 (252)
|.+++++|+.|..+.+.+.+++..+. +++--++..+. +.+|++.++||+++ ||+.+ +.| ..-+.+.|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~~~~~~~~~ygv~~vPalvI--ng~~~--~~G-----~~p~~~el~ 72 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG-IEVEIIDIEDFEEIEKYGVMSVPALVI--NGKVV--FVG-----RVPSKEELK 72 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT-EEEEEEETTTHHHHHHTT-SSSSEEEE--TTEEE--EES-----S--HHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEccCHHHHHHcCCCCCCEEEE--CCEEE--EEe-----cCCCHHHHH
Confidence 44478889999999999999999995 66544454322 38899999999954 88754 444 234567787
Q ss_pred HHHH
Q 025454 203 LVLC 206 (252)
Q Consensus 203 ~~L~ 206 (252)
.+|.
T Consensus 73 ~~l~ 76 (76)
T PF13192_consen 73 ELLE 76 (76)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7763
No 135
>PHA03050 glutaredoxin; Provisional
Probab=97.75 E-value=2e-05 Score=61.48 Aligned_cols=97 Identities=15% Similarity=0.136 Sum_probs=61.7
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc--------CCCCCCCCCcccEEEEEEC
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST--------DCIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~--------~~~~~~~i~~lPTlliy~~ 179 (252)
.+|++.+.+.+ -|+.|..+|||.|+.....|..+.-.++....+.|+.. .+.+..+.+++|++ |.+
T Consensus 3 ~~~v~~~i~~~----~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~ 76 (108)
T PHA03050 3 EEFVQQRLANN----KVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFG 76 (108)
T ss_pred HHHHHHHhccC----CEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EEC
Confidence 35666666553 36778899999999999999888765655555555431 12234567899998 567
Q ss_pred CeEEEEeecccccCCCCCHHHHHHHHHhcCCCCC
Q 025454 180 GAVKANYVGLRSFGRRCTPEGVALVLCQSDPVLN 213 (252)
Q Consensus 180 G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~i~~ 213 (252)
|+.++ |+.++-.--....|...|...|++.+
T Consensus 77 g~~iG---G~ddl~~l~~~g~L~~~l~~~~~~~~ 107 (108)
T PHA03050 77 KTSIG---GYSDLLEIDNMDALGDILSSIGVLRT 107 (108)
T ss_pred CEEEe---ChHHHHHHHHcCCHHHHHHHcccccc
Confidence 87664 33332000112357778888887654
No 136
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.71 E-value=6e-05 Score=62.35 Aligned_cols=67 Identities=13% Similarity=0.225 Sum_probs=48.3
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHH----HCCC--ceEEEEecc--------------------------CCCCCC
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELAR----KYPA--TKFVKIIST--------------------------DCIPNY 166 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~----ky~~--vkFvkI~~~--------------------------~~~~~~ 166 (252)
+|+.|.++|.|.||++|+.+.|+|.++-. ..+. |-|+.-|.+ ++..+|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 45799999999999999999998877543 4444 555544332 122489
Q ss_pred CCCcccEEEEEE-CCeEEEE
Q 025454 167 PDRNLPTVLVYN-NGAVKAN 185 (252)
Q Consensus 167 ~i~~lPTlliy~-~G~~v~~ 185 (252)
.|.++|++.+.+ +|..|..
T Consensus 112 ~v~~iP~l~i~~~dG~~v~~ 131 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVTE 131 (157)
T ss_pred ccCcCceeEEecCCCCEehH
Confidence 999999988765 5876643
No 137
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.68 E-value=0.00044 Score=61.85 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=58.4
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC------------CCCCCCCCcccEEEEEECCeEEEEee
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD------------CIPNYPDRNLPTVLVYNNGAVKANYV 187 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~------------~~~~~~i~~lPTlliy~~G~~v~~~v 187 (252)
.+-+++||...|+.|+.+.|++..++.+|.= |..+.+|..- .+.++++..+|++++..-......-+
T Consensus 151 ~~gL~fFy~~~C~~C~~~apil~~fa~~ygi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv 230 (256)
T TIGR02739 151 SYGLFFFYRGKSPISQKMAPVIQAFAKEYGISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPL 230 (256)
T ss_pred ceeEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEE
Confidence 4889999999999999999999999999973 6677776542 12588999999887776542222222
Q ss_pred cccccCCCCCHHHHHHHHH
Q 025454 188 GLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 188 G~~~~G~~~~~e~lE~~L~ 206 (252)
|. | -++.++|..-+.
T Consensus 231 ~~---G-~iS~deL~~Ri~ 245 (256)
T TIGR02739 231 AY---G-FISQDELKERIL 245 (256)
T ss_pred ee---c-cCCHHHHHHHHH
Confidence 22 2 356677755443
No 138
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.66 E-value=0.00017 Score=58.69 Aligned_cols=71 Identities=10% Similarity=0.158 Sum_probs=51.3
Q ss_pred CceEEEEEEcC-CCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------CCCCCCCCcc-
Q 025454 120 DVWVVVILYKD-GFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------CIPNYPDRNL- 171 (252)
Q Consensus 120 ~~~VVV~fya~-wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------~~~~~~i~~l- 171 (252)
++++||+||+. ||+.|....+.|.++.+++. ++.|+-|..+. +...|++...
T Consensus 30 gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~~ 109 (154)
T PRK09437 30 GQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVWGEK 109 (154)
T ss_pred CCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCCccc
Confidence 46899999975 78889999999999988874 47788774321 1135666543
Q ss_pred -----------cEEEEE-ECCeEEEEeeccc
Q 025454 172 -----------PTVLVY-NNGAVKANYVGLR 190 (252)
Q Consensus 172 -----------PTlliy-~~G~~v~~~vG~~ 190 (252)
|+.+++ ++|.++..+.|+.
T Consensus 110 ~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~ 140 (154)
T PRK09437 110 KFMGKTYDGIHRISFLIDADGKIEHVFDKFK 140 (154)
T ss_pred ccccccccCcceEEEEECCCCEEEEEEcCCC
Confidence 555555 5899999998864
No 139
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=97.63 E-value=0.0002 Score=57.19 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHC--CCceEEEEecc
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKY--PATKFVKIIST 160 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky--~~vkFvkI~~~ 160 (252)
.||+.|++.||+.|+.-.+.|.++..++ .++.++-|..+
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~ 66 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE 66 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC
Confidence 4455556999999999999999999988 45888888543
No 140
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.62 E-value=0.00058 Score=60.77 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=59.4
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCC------------CCCCCCCcccEEEEEECCeEEEEee
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDC------------IPNYPDRNLPTVLVYNNGAVKANYV 187 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~------------~~~~~i~~lPTlliy~~G~~v~~~v 187 (252)
.+-+++||...|+.|+.+.|+|..++.+|.= |..+.+|..-. ..+++|..+|++++..-......-+
T Consensus 144 ~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv 223 (248)
T PRK13703 144 HYGLMFFYRGQDPIDGQLAQVINDFRDTYGLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPL 223 (248)
T ss_pred cceEEEEECCCCchhHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEE
Confidence 4889999999999999999999999999974 77777775321 2479999999988886543222222
Q ss_pred cccccCCCCCHHHHHHHHH
Q 025454 188 GLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 188 G~~~~G~~~~~e~lE~~L~ 206 (252)
|. | -++.++|..-+.
T Consensus 224 ~~---G-~iS~deL~~Ri~ 238 (248)
T PRK13703 224 SY---G-FITQDDLAKRFL 238 (248)
T ss_pred ee---c-cCCHHHHHHHHH
Confidence 22 2 356777755444
No 141
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.61 E-value=0.00012 Score=54.36 Aligned_cols=71 Identities=20% Similarity=0.195 Sum_probs=51.6
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-------CCCCC--CCCcccEEEEEECCeEEEEeecccccCC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-------CIPNY--PDRNLPTVLVYNNGAVKANYVGLRSFGR 194 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-------~~~~~--~i~~lPTlliy~~G~~v~~~vG~~~~G~ 194 (252)
|+.|+.+|||.|+.+...|.++...++++.|..++... +...+ +..++|+++ .+|+.++ |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~ig---G------ 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKHVG---G------ 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEEec---C------
Confidence 56788999999999999999998888888888877642 11222 357899984 5776532 3
Q ss_pred CCCHHHHHHHHHhc
Q 025454 195 RCTPEGVALVLCQS 208 (252)
Q Consensus 195 ~~~~e~lE~~L~~~ 208 (252)
.++|..++.+.
T Consensus 71 ---~~dl~~~~~~~ 81 (86)
T TIGR02183 71 ---CTDFEQLVKEN 81 (86)
T ss_pred ---HHHHHHHHHhc
Confidence 36677776653
No 142
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=97.56 E-value=0.00017 Score=57.83 Aligned_cols=70 Identities=14% Similarity=0.208 Sum_probs=50.4
Q ss_pred ceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC--------------------------CCCCCCCC--
Q 025454 121 VWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD--------------------------CIPNYPDR-- 169 (252)
Q Consensus 121 ~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~--------------------------~~~~~~i~-- 169 (252)
+++||.|| +.||+.|....|.|.+++.+|. ++.|+-|..+. +...|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~~~ 108 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVFDE 108 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCccc
Confidence 57888887 9999999999999999999886 47887774321 01235554
Q ss_pred --ccc--EEEEE-ECCeEEEEeeccc
Q 025454 170 --NLP--TVLVY-NNGAVKANYVGLR 190 (252)
Q Consensus 170 --~lP--Tlliy-~~G~~v~~~vG~~ 190 (252)
++| +.+++ ++|+++..+.|..
T Consensus 109 ~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 109 DLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cCCCccceEEEECCCCEEEEEEecCC
Confidence 333 55555 5899999888764
No 143
>PRK15000 peroxidase; Provisional
Probab=97.54 E-value=0.00047 Score=59.31 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=63.0
Q ss_pred CCceEEEEEEc-CCCchhhhHHHHHHHHHHHCC--CceEEEEeccC-------------------------------CCC
Q 025454 119 PDVWVVVILYK-DGFAECGLLMQCLEELARKYP--ATKFVKIISTD-------------------------------CIP 164 (252)
Q Consensus 119 ~~~~VVV~fya-~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~-------------------------------~~~ 164 (252)
+|++|||+||+ .||+.|..-.+.|.+++.+|. +++++-|..+. +..
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 35799999999 599999999999999999885 47777664320 013
Q ss_pred CCCCC------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHH
Q 025454 165 NYPDR------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 165 ~~~i~------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
.|++. .+|+.+|+. +|.++...+|....|. ..+++-++|
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr--~~~eilr~l 158 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGR--NIDEMLRMV 158 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCC--CHHHHHHHH
Confidence 47776 689877776 8999999888766664 455555555
No 144
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=97.52 E-value=0.0012 Score=56.21 Aligned_cols=97 Identities=15% Similarity=0.277 Sum_probs=67.7
Q ss_pred CceEEcChhhHHHHHHcCCCCceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---------------
Q 025454 100 GSVMPISGSDFVREVSQAPPDVWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD--------------- 161 (252)
Q Consensus 100 G~v~eIs~~~f~~~V~~~~~~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~--------------- 161 (252)
|....++-.+| +|++|||.|| +.||+.|..-.+.|.++..+|. ++.++-|..+.
T Consensus 19 g~~~~v~L~d~--------~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~ 90 (187)
T PRK10382 19 GEFIEVTEKDT--------EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIA 90 (187)
T ss_pred CcceEEEHHHh--------CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhcccc
Confidence 56666665555 3468999999 9999999999999999998884 46666663221
Q ss_pred -------------CCCCCCC----Ccc--cEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 162 -------------CIPNYPD----RNL--PTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 162 -------------~~~~~~i----~~l--PTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
....|++ .++ |+.+|.. +|.++...+.....|. +.+++-..|.
T Consensus 91 ~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~--~~~eil~~l~ 153 (187)
T PRK10382 91 KIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGR--DASDLLRKIK 153 (187)
T ss_pred CCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH
Confidence 1145666 356 8777775 8999888775543343 5666666664
No 145
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=97.51 E-value=0.00035 Score=55.32 Aligned_cols=71 Identities=17% Similarity=0.289 Sum_probs=52.2
Q ss_pred CceEEEEEE-cCCCchhhhHHHHHHHHHHHC--CCceEEEEeccC----------C---------------CCCCCCCcc
Q 025454 120 DVWVVVILY-KDGFAECGLLMQCLEELARKY--PATKFVKIISTD----------C---------------IPNYPDRNL 171 (252)
Q Consensus 120 ~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky--~~vkFvkI~~~~----------~---------------~~~~~i~~l 171 (252)
++++||.|| +.||+.|....+.|.++..+| .++.|+-|..+. . ...|++...
T Consensus 22 gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~~ 101 (140)
T cd02971 22 GKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLIE 101 (140)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCccc
Confidence 468999999 789999999999999999987 458888875421 1 134555555
Q ss_pred c---------EEEEEE-CCeEEEEeeccc
Q 025454 172 P---------TVLVYN-NGAVKANYVGLR 190 (252)
Q Consensus 172 P---------Tlliy~-~G~~v~~~vG~~ 190 (252)
| ++++.. +|+++.+..|..
T Consensus 102 ~~~~~~~~~p~~~lid~~g~i~~~~~~~~ 130 (140)
T cd02971 102 KSAGGGLAARATFIIDPDGKIRYVEVEPL 130 (140)
T ss_pred cccccCceeEEEEEECCCCcEEEEEecCC
Confidence 5 555554 699988888764
No 146
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.43 E-value=0.00072 Score=46.95 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=35.6
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC---C----CCCCCCcccEEEEEECC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC---I----PNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~---~----~~~~i~~lPTlliy~~G 180 (252)
|+.|+++||++|+.+...|... ++.|..++.+.. . ...+...+|+|++ +|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC
Confidence 5778999999999998888763 456666665421 1 2237889999976 55
No 147
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.42 E-value=0.00032 Score=50.60 Aligned_cols=55 Identities=24% Similarity=0.277 Sum_probs=41.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC--------CCCCCCCcccEEEEEECCeEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC--------IPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~--------~~~~~i~~lPTlliy~~G~~v 183 (252)
|+.|+++|||.|+.+.+.|.++... ..++.++.... ...++..++|++ |.+|+.+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~i 64 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGVK---PAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKFI 64 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCCC---cEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEEE
Confidence 5778999999999999999998764 45666665432 134577889996 6788764
No 148
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.37 E-value=0.00032 Score=55.72 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=34.7
Q ss_pred CceEEEEEEcCCCch-hhhHHHHHHHHHHHCCC-----ceEEEEec
Q 025454 120 DVWVVVILYKDGFAE-CGLLMQCLEELARKYPA-----TKFVKIIS 159 (252)
Q Consensus 120 ~~~VVV~fya~wc~~-Ck~l~~~l~~LA~ky~~-----vkFvkI~~ 159 (252)
++++||.||++||++ |....+.|.++..+|.. +.|+-|..
T Consensus 22 gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 22 GKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 469999999999998 99999999999998854 77777754
No 149
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=97.36 E-value=0.0041 Score=51.28 Aligned_cols=107 Identities=19% Similarity=0.341 Sum_probs=80.6
Q ss_pred HHHhhhcCCCceEEcChhhHHHHHHcCCCCce-EEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCC
Q 025454 91 REATKISRFGSVMPISGSDFVREVSQAPPDVW-VVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPN 165 (252)
Q Consensus 91 ~~~~~~~~fG~v~eIs~~~f~~~V~~~~~~~~-VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~ 165 (252)
++=....++..|.++|..++....... .+ +++.|+.........+...|..+|+++.+ +.|+.++++. ....
T Consensus 68 ~~fI~~~~~P~v~~~t~~n~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~ 144 (184)
T PF13848_consen 68 KKFIKKNSFPLVPELTPENFEKLFSSP---KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKY 144 (184)
T ss_dssp HHHHHHHSSTSCEEESTTHHHHHHSTS---SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHH
T ss_pred HHHHHHhccccccccchhhHHHHhcCC---CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHH
Confidence 333455678889999999988877643 34 67777777788899999999999999987 8999999884 3467
Q ss_pred CCCC--cccEEEEEE--CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 166 YPDR--NLPTVLVYN--NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 166 ~~i~--~lPTlliy~--~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
|++. .+|+++++. .++ ..+. . -..++.+.|..||.
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~--~~~~-~---~~~~~~~~i~~Fl~ 183 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGK--YYYL-P---EGEITPESIEKFLN 183 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSE--EEE------SSCGCHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCc--EEcC-C---CCCCCHHHHHHHhc
Confidence 8887 899999998 343 2221 1 12578899999885
No 150
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.28 E-value=0.00077 Score=52.49 Aligned_cols=88 Identities=15% Similarity=0.259 Sum_probs=62.7
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcC--CCchhhhHHHHHHHHHHHCCCceEEEEecc----CCCCCCCCCcccEEE
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKD--GFAECGLLMQCLEELARKYPATKFVKIIST----DCIPNYPDRNLPTVL 175 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~--wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~----~~~~~~~i~~lPTll 175 (252)
...++.+++...+...+ ..|+.|..+ -|+.|.-+.=+|-+|.+.|++.-...+... .+...|++..+|+|+
T Consensus 11 ~~~vd~~~ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLv 87 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALV 87 (107)
T ss_dssp EEEE-CCCHHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEE
T ss_pred CeeechhhHHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEE
Confidence 56677777777776543 455555443 256677777799999999998444433221 345899999999999
Q ss_pred EEECCeEEEEeeccccc
Q 025454 176 VYNNGAVKANYVGLRSF 192 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~ 192 (252)
+|++|+.++.+.|+.++
T Consensus 88 f~R~g~~lG~i~gi~dW 104 (107)
T PF07449_consen 88 FFRDGRYLGAIEGIRDW 104 (107)
T ss_dssp EEETTEEEEEEESSSTH
T ss_pred EEECCEEEEEecCeecc
Confidence 99999999999998753
No 151
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.28 E-value=0.0018 Score=51.71 Aligned_cols=78 Identities=17% Similarity=0.192 Sum_probs=60.5
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC---CCCCCCCCcccEEEEEECCe
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD---CIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~ 181 (252)
|..+..++|... ..+.|||.|...|-+.|-.|...|.++|....+ +..+-++.++ ..+-|.+...||+++|.|++
T Consensus 10 s~~~VdqaI~~t-~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~k 88 (142)
T KOG3414|consen 10 SGWEVDQAILST-EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNK 88 (142)
T ss_pred cHHHHHHHHhcc-cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCc
Confidence 455666677655 357999999999999999999999999988765 3334445443 45789999999999999887
Q ss_pred EEE
Q 025454 182 VKA 184 (252)
Q Consensus 182 ~v~ 184 (252)
-+.
T Consensus 89 Hmk 91 (142)
T KOG3414|consen 89 HMK 91 (142)
T ss_pred eEE
Confidence 654
No 152
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.16 E-value=0.0006 Score=47.03 Aligned_cols=56 Identities=23% Similarity=0.287 Sum_probs=39.9
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEEEEe
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVKANY 186 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v~~~ 186 (252)
|+.|+++||+.|+.+.+.|..+. +.|..++.... ....+...+|++ |.+|+.++.+
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-----i~~~~~di~~~~~~~~~l~~~~~~~~~P~~--~~~~~~igg~ 64 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-----IEFEEIDILEDGELREELKELSGWPTVPQI--FINGEFIGGY 64 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CcEEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEecH
Confidence 56788999999999999988765 56666665432 123466788877 4588776543
No 153
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.14 E-value=0.0041 Score=46.28 Aligned_cols=93 Identities=13% Similarity=0.130 Sum_probs=63.5
Q ss_pred EEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC-CceEEEEeccCCCCCCCCCcccEEEEEECCe
Q 025454 103 MPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP-ATKFVKIISTDCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 103 ~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~-~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~ 181 (252)
.+|+..+..+.+.... ..+||-|+.++++ .+...|.++|..+. .+.|..+...+..+.+.+. .|++++|+.+.
T Consensus 2 ~~i~s~~~l~~~~~~~--~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~-~~~i~l~~~~~ 75 (97)
T cd02981 2 KELTSKEELEKFLDKD--DVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVK-PGSVVLFKPFE 75 (97)
T ss_pred eecCCHHHHHHHhccC--CeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCC-CCceEEeCCcc
Confidence 4565555444443332 4778888888876 56778999999996 5999888876666667664 59999998762
Q ss_pred EEEEeeccccc-CCCCCHHHHHHHHHh
Q 025454 182 VKANYVGLRSF-GRRCTPEGVALVLCQ 207 (252)
Q Consensus 182 ~v~~~vG~~~~-G~~~~~e~lE~~L~~ 207 (252)
. +...+ | .++.+.|..|+..
T Consensus 76 ~-----~~~~y~g-~~~~~~l~~fi~~ 96 (97)
T cd02981 76 E-----EPVEYDG-EFTEESLVEFIKD 96 (97)
T ss_pred c-----CCccCCC-CCCHHHHHHHHHh
Confidence 1 11223 3 3457889888864
No 154
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.12 E-value=0.00072 Score=51.67 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=47.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC----------CCCCCCCcccEEEEEECCeEEEEeecccccC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC----------IPNYPDRNLPTVLVYNNGAVKANYVGLRSFG 193 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~----------~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G 193 (252)
|+-|..+|||.|+.+...|.++. +.|..++.+.. ....+..++|.+ |.+|+.++ |+.++-
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~-----i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~iG---G~ddl~ 79 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG-----VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLVG---GLENVM 79 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-----CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEEc---CHHHHH
Confidence 66788999999999999887763 33334443321 122367899997 67886654 433320
Q ss_pred CCCCHHHHHHHHHhcCCC
Q 025454 194 RRCTPEGVALVLCQSDPV 211 (252)
Q Consensus 194 ~~~~~e~lE~~L~~~g~i 211 (252)
.-.....|..+|.+.|++
T Consensus 80 ~l~~~G~L~~~l~~~~~~ 97 (99)
T TIGR02189 80 ALHISGSLVPMLKQAGAL 97 (99)
T ss_pred HHHHcCCHHHHHHHhCcc
Confidence 001123466677766654
No 155
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=97.11 E-value=0.0038 Score=50.15 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=57.4
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccCCC---CCCCCCccc-EEEEEECC
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTDCI---PNYPDRNLP-TVLVYNNG 180 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~~~---~~~~i~~lP-Tlliy~~G 180 (252)
++-+..++|... .++.||+.|..+|-+.|..|..+|.++|.+-.. ..++-++.++.+ .-|.+. -| |+++|.++
T Consensus 7 s~~~VDqAI~~e-~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 7 SGWHVDQAILSE-EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp SHHHHHHHHHH--SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred ccchHHHHHhcc-CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 455666777665 468999999999999999999999999998776 566677877654 557787 67 67777687
Q ss_pred eEEE
Q 025454 181 AVKA 184 (252)
Q Consensus 181 ~~v~ 184 (252)
+-+.
T Consensus 85 khm~ 88 (133)
T PF02966_consen 85 KHMM 88 (133)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 7553
No 156
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.11 E-value=0.003 Score=49.72 Aligned_cols=81 Identities=16% Similarity=0.139 Sum_probs=56.5
Q ss_pred CceEEEEEEcC----CCchhhhHH--HHHHHHHHHCCCceEEEEeccC-----CCCCCCCCcccEEEEE---E-CCeEEE
Q 025454 120 DVWVVVILYKD----GFAECGLLM--QCLEELARKYPATKFVKIISTD-----CIPNYPDRNLPTVLVY---N-NGAVKA 184 (252)
Q Consensus 120 ~~~VVV~fya~----wc~~Ck~l~--~~l~~LA~ky~~vkFvkI~~~~-----~~~~~~i~~lPTlliy---~-~G~~v~ 184 (252)
.++++|+||++ ||..|+.+- |.+.++-.. +.-+...|++. ++..+++.++|++.++ . +.+++.
T Consensus 17 ~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~ 94 (116)
T cd02991 17 LRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVG 94 (116)
T ss_pred CCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEEE
Confidence 47999999999 888886543 333333332 24555556642 4578999999999998 2 345688
Q ss_pred EeecccccCCCCCHHHHHHHHHhc
Q 025454 185 NYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 185 ~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
++.|. .++++|...|...
T Consensus 95 ~i~G~------~~~~~ll~~L~~~ 112 (116)
T cd02991 95 RLEGL------IQPEDLINRLTFI 112 (116)
T ss_pred EEeCC------CCHHHHHHHHHHH
Confidence 88886 5688888888754
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.06 E-value=0.0041 Score=61.29 Aligned_cols=75 Identities=17% Similarity=0.154 Sum_probs=58.0
Q ss_pred ceEEE-EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEeecccccCCCC
Q 025454 121 VWVVV-ILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRC 196 (252)
Q Consensus 121 ~~VVV-~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~ 196 (252)
+++-| -|++++|+.|..+...+.++|...|++..-.|+..+ +..+|+|.++|++++ ||+.+ +.|. .
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~~--~~G~------~ 545 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQV--YFGK------K 545 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCEEE--EeeC------C
Confidence 45545 557999999999999999999999998888888764 457999999999887 77654 2342 2
Q ss_pred CHHHHHHHH
Q 025454 197 TPEGVALVL 205 (252)
Q Consensus 197 ~~e~lE~~L 205 (252)
+.+++-.+|
T Consensus 546 ~~~~~~~~~ 554 (555)
T TIGR03143 546 TIEEMLELI 554 (555)
T ss_pred CHHHHHHhh
Confidence 566666554
No 158
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.04 E-value=0.0035 Score=55.13 Aligned_cols=80 Identities=13% Similarity=0.262 Sum_probs=55.1
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec-----------------------------------cCC-
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS-----------------------------------TDC- 162 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~-----------------------------------~~~- 162 (252)
.++.+|+.|..+.||.|+.+.+.+..+...--.+.|+-... ..|
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c~ 185 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASCD 185 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccccc
Confidence 45688999999999999999999988754211222221100 001
Q ss_pred ---------CCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 163 ---------IPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 163 ---------~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
..+++|+++|||+ |.||+.+ .|. .+.+.|+.+|.+.
T Consensus 186 ~~v~~~~~la~~lgi~gTPtiv-~~~G~~~---~G~------~~~~~L~~~l~~~ 230 (232)
T PRK10877 186 VDIADHYALGVQFGVQGTPAIV-LSNGTLV---PGY------QGPKEMKAFLDEH 230 (232)
T ss_pred chHHHhHHHHHHcCCccccEEE-EcCCeEe---eCC------CCHHHHHHHHHHc
Confidence 1478999999999 7899876 454 3578898888753
No 159
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.03 E-value=0.0002 Score=62.68 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=68.8
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---CCCCCCCCcccEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD---CIPNYPDRNLPTVL 175 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~---~~~~~~i~~lPTll 175 (252)
.++.|+.+++...++.+ -++.|++|||+.|+-+.++|..+|.--- +++..+|+.+. +.-+|-+..+|||-
T Consensus 25 ~~~~~~eenw~~~l~ge-----wmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIY 99 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTGE-----WMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIY 99 (248)
T ss_pred eeEEecccchhhhhchH-----HHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEE
Confidence 68889999999888654 4789999999999999999999987433 48999998764 45789999999999
Q ss_pred EEECCeEEEEeeccc
Q 025454 176 VYNNGAVKANYVGLR 190 (252)
Q Consensus 176 iy~~G~~v~~~vG~~ 190 (252)
=.++|.. .|+.|.+
T Consensus 100 HvkDGeF-rrysgaR 113 (248)
T KOG0913|consen 100 HVKDGEF-RRYSGAR 113 (248)
T ss_pred Eeecccc-ccccCcc
Confidence 9999964 4555554
No 160
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.03 E-value=0.0013 Score=45.01 Aligned_cols=53 Identities=21% Similarity=0.301 Sum_probs=39.3
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v 183 (252)
|+.|..+||+.|+.....|+.. ++.|-.++.+.. ....+..++|++++ +|+.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCEEC
Confidence 5778999999999999888543 367777766532 12338899999987 88754
No 161
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.99 E-value=0.0026 Score=61.98 Aligned_cols=59 Identities=19% Similarity=0.127 Sum_probs=51.5
Q ss_pred EEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEE
Q 025454 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 123 VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v 183 (252)
-|.-|++++|+.|......+.++|...|.+.+-.|+... +..+|++.++|++++ ||+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~ 180 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGEEF 180 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCcEE
Confidence 477899999999999999999999999999999998764 568999999999965 67544
No 162
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.93 E-value=0.0052 Score=52.80 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=57.6
Q ss_pred CceEEE-EEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------------CCCCC
Q 025454 120 DVWVVV-ILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------------CIPNY 166 (252)
Q Consensus 120 ~~~VVV-~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------------~~~~~ 166 (252)
|++||| .|++.||+.|..-.+.|.++..+|. +++++-|..+. ....|
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~y 106 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREY 106 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHc
Confidence 457766 6889999999999999999888875 46666663321 11356
Q ss_pred CCC------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 167 PDR------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 167 ~i~------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++. .+|+++|+. +|.++...+.....|. +.+++.+.|.
T Consensus 107 gv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr--~~~ellr~l~ 151 (202)
T PRK13190 107 NLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGR--NIDEIIRITK 151 (202)
T ss_pred CCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH
Confidence 663 589888885 7888776655443343 4566666554
No 163
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.80 E-value=0.0065 Score=51.63 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.2
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHH
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEE 144 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~ 144 (252)
++..|+.|+.+.|++|+.+.+.+..
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh
Confidence 3578999999999999999998876
No 164
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=96.80 E-value=0.0056 Score=52.54 Aligned_cols=85 Identities=12% Similarity=0.121 Sum_probs=57.6
Q ss_pred ceE-EEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------------CCCCCC
Q 025454 121 VWV-VVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------------CIPNYP 167 (252)
Q Consensus 121 ~~V-VV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------------~~~~~~ 167 (252)
++| |+.|++.||+.|..-.+.|.+++.+|. +++++-|..+. +...|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 455 557889999999999999999999885 47777764321 013566
Q ss_pred CC----ccc----EEEEE-ECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 168 DR----NLP----TVLVY-NNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 168 i~----~lP----Tlliy-~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+. +.| +.+|+ .+|+++..+++....|. +.+++..+|..
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr--~~~ell~~l~~ 152 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGR--NFDEILRVVDA 152 (203)
T ss_pred CccccCCCCceeeEEEEECCCCeEEEEEecCCCCCC--CHHHHHHHHHH
Confidence 54 233 44444 68999988887655454 35666666644
No 165
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=96.78 E-value=0.015 Score=52.28 Aligned_cols=85 Identities=14% Similarity=0.175 Sum_probs=59.9
Q ss_pred CceEEEEEE-cCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC-------------------------------CCCC
Q 025454 120 DVWVVVILY-KDGFAECGLLMQCLEELARKYP--ATKFVKIISTD-------------------------------CIPN 165 (252)
Q Consensus 120 ~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~-------------------------------~~~~ 165 (252)
+++||+.|| +.||+.|..-.+.|.++..+|. +++++-|..+. ++..
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 468899888 8999999999999999988884 46666553221 1146
Q ss_pred CCCC-----cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 166 YPDR-----NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 166 ~~i~-----~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
|++. .+|+.+|.. +|.++...+.....|. +.+++-..|.
T Consensus 178 yGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr--~v~eiLr~l~ 222 (261)
T PTZ00137 178 FGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGR--SVDETLRLFD 222 (261)
T ss_pred cCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCC--CHHHHHHHHH
Confidence 7764 589888886 8999888764443343 5566666553
No 166
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.0099 Score=49.31 Aligned_cols=73 Identities=14% Similarity=0.281 Sum_probs=53.4
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHH---HHHHC-CCceEEEEecc-------------------CCCCCCCCCcccEEE
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEE---LARKY-PATKFVKIIST-------------------DCIPNYPDRNLPTVL 175 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~---LA~ky-~~vkFvkI~~~-------------------~~~~~~~i~~lPTll 175 (252)
.+++.++.|-++.|+.|..|...+-. |..-+ ++.-++.++++ ++++.|.+++.|||+
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 46899999999999999999866533 22222 22445554332 345789999999999
Q ss_pred EEEC-CeEEEEeecccc
Q 025454 176 VYNN-GAVKANYVGLRS 191 (252)
Q Consensus 176 iy~~-G~~v~~~vG~~~ 191 (252)
+|.. |+.+..+-|..+
T Consensus 121 Ffdk~Gk~Il~lPGY~p 137 (182)
T COG2143 121 FFDKTGKTILELPGYMP 137 (182)
T ss_pred EEcCCCCEEEecCCCCC
Confidence 9975 899999988643
No 167
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.71 E-value=0.012 Score=43.34 Aligned_cols=68 Identities=16% Similarity=0.273 Sum_probs=47.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCC------CCCCCCcccEEEEEECCeEEEEeecccccCCCCC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCI------PNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCT 197 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~------~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~ 197 (252)
|..|..+||+.|+.+...|.+ .++.|-.++.+.-. ...+...+|++++ +|. .+.|| .
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf-------~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGF-------R 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecC-------C
Confidence 556788999999999988855 35778777765321 2357789999965 453 34554 4
Q ss_pred HHHHHHHHHhc
Q 025454 198 PEGVALVLCQS 208 (252)
Q Consensus 198 ~e~lE~~L~~~ 208 (252)
.+.|..+...+
T Consensus 66 ~~~l~~~~~~~ 76 (81)
T PRK10329 66 PDMINRLHPAP 76 (81)
T ss_pred HHHHHHHHHhh
Confidence 67777766543
No 168
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.70 E-value=0.0026 Score=54.06 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=33.3
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEec
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIIS 159 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~ 159 (252)
+|++|||.|+|+||+.|+. .+.|++|.++|. ++.++-+.+
T Consensus 24 ~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~ 65 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPC 65 (183)
T ss_pred CCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeec
Confidence 3578999999999999975 678999999996 477777765
No 169
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=96.68 E-value=0.0095 Score=46.24 Aligned_cols=83 Identities=11% Similarity=0.174 Sum_probs=57.4
Q ss_pred Ec-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEecc-------CCCCCCCCCc-ccE
Q 025454 104 PI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIIST-------DCIPNYPDRN-LPT 173 (252)
Q Consensus 104 eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~-------~~~~~~~i~~-lPT 173 (252)
.| +.+++.+.+.+ +..++|+|+=.+..||-+......|++.....++ +.++.++.- .+++.|+|.- =|-
T Consensus 3 ~L~t~eql~~i~~~-S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 3 PLTTEEQLEEILEE-SKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp E--SHHHHHHHHHH----SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred ccCCHHHHHHHHHh-cccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 45 44666666655 3557888888999999999999999999999887 888888753 3457888864 799
Q ss_pred EEEEECCeEEEEee
Q 025454 174 VLVYNNGAVKANYV 187 (252)
Q Consensus 174 lliy~~G~~v~~~v 187 (252)
+|+++||+.+..-.
T Consensus 82 ~ili~~g~~v~~aS 95 (105)
T PF11009_consen 82 VILIKNGKVVWHAS 95 (105)
T ss_dssp EEEEETTEEEEEEE
T ss_pred EEEEECCEEEEECc
Confidence 99999999997654
No 170
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.66 E-value=0.0046 Score=44.88 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=39.1
Q ss_pred EEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC------CCCCCCCcccEEEEEECCeEE
Q 025454 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC------IPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 123 VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~------~~~~~i~~lPTlliy~~G~~v 183 (252)
-|+.|+.+||+.|+.....|... ++.|..++.+.- ....+...+|.++ .+|+.+
T Consensus 9 ~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~~i 68 (79)
T TIGR02190 9 SVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGKLI 68 (79)
T ss_pred CEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCEEE
Confidence 47788999999999999988753 466666665421 2345778999985 488764
No 171
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=96.65 E-value=0.012 Score=50.18 Aligned_cols=85 Identities=16% Similarity=0.256 Sum_probs=58.3
Q ss_pred CceEEEEEEc-CCCchhhhHHHHHHHHHHHCC--CceEEEEeccC-------------------------------CCCC
Q 025454 120 DVWVVVILYK-DGFAECGLLMQCLEELARKYP--ATKFVKIISTD-------------------------------CIPN 165 (252)
Q Consensus 120 ~~~VVV~fya-~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~-------------------------------~~~~ 165 (252)
|+++||.||. .||+.|....+.|.+++.+|. +++++-|..+. +...
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4689999995 889999998899999999886 47777774321 0134
Q ss_pred CCCC------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 166 YPDR------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 166 ~~i~------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
|++. .+|+.+|+. +|.++..+++....|. ..+++-..|.
T Consensus 116 ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r--~~~e~l~~l~ 161 (199)
T PTZ00253 116 YGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGR--NVEEVLRLLE 161 (199)
T ss_pred cCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCC--CHHHHHHHHH
Confidence 6653 357777665 7888888877655554 3344444443
No 172
>PRK13191 putative peroxiredoxin; Provisional
Probab=96.64 E-value=0.015 Score=50.56 Aligned_cols=85 Identities=12% Similarity=0.166 Sum_probs=59.2
Q ss_pred CceEEE-EEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------------CCCCC
Q 025454 120 DVWVVV-ILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------------CIPNY 166 (252)
Q Consensus 120 ~~~VVV-~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------------~~~~~ 166 (252)
|+|||| .|+++||+.|..-.+.|.+++.+|. +++++-|..+. +...|
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~y 112 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRL 112 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHc
Confidence 456665 7789999999999999999999884 57777664321 01245
Q ss_pred CCC-------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 167 PDR-------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 167 ~i~-------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++- .+|+.+|+. +|.+...+++....|. ..+++-+.|.
T Consensus 113 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr--~~~eilr~l~ 158 (215)
T PRK13191 113 GMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGR--NIDEILRAIR 158 (215)
T ss_pred CCcccccCCceeEEEEEECCCCEEEEEEecCCCCCC--CHHHHHHHHH
Confidence 542 478777774 8998888887655564 4566666554
No 173
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.60 E-value=0.016 Score=50.37 Aligned_cols=85 Identities=12% Similarity=0.178 Sum_probs=58.6
Q ss_pred CceE-EEEEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------------CCCCC
Q 025454 120 DVWV-VVILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------------CIPNY 166 (252)
Q Consensus 120 ~~~V-VV~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------------~~~~~ 166 (252)
|+++ |+.|++.||+.|..-.+.|.+++.+|. +++++-|..+. .+..|
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~y 107 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQL 107 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHc
Confidence 3565 578899999999999999999999884 57777664321 11346
Q ss_pred CC-------CcccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 167 PD-------RNLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 167 ~i-------~~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++ ..+|+++|+- +|+++..++.....|. ..+++..+|.
T Consensus 108 g~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr--~~~eilr~l~ 153 (215)
T PRK13599 108 GMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGR--NVDEILRALK 153 (215)
T ss_pred CCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCC--CHHHHHHHHH
Confidence 65 3679888885 7988887764433353 4556656554
No 174
>PRK13189 peroxiredoxin; Provisional
Probab=96.58 E-value=0.018 Score=50.34 Aligned_cols=85 Identities=12% Similarity=0.190 Sum_probs=57.3
Q ss_pred CceEEE-EEEcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC------------------------------CCCCC
Q 025454 120 DVWVVV-ILYKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD------------------------------CIPNY 166 (252)
Q Consensus 120 ~~~VVV-~fya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~------------------------------~~~~~ 166 (252)
|+|||| .|+++||+.|..-.+.|.+++.+|. +++++-|..+. +...|
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~y 114 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKKL 114 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHHh
Confidence 466665 6679999999999999999988884 46666653220 01356
Q ss_pred CCC-------cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 167 PDR-------NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 167 ~i~-------~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
++. .+|+.+|+. +|.++..+++....|. +.+++..+|.
T Consensus 115 gv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr--~~~eilr~l~ 160 (222)
T PRK13189 115 GMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGR--NMDEILRLVK 160 (222)
T ss_pred CCCccccCCCceeEEEEECCCCeEEEEEecCCCCCC--CHHHHHHHHH
Confidence 653 568777775 8988888776554454 3455666664
No 175
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=96.56 E-value=0.0061 Score=48.48 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=34.4
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
...+|+.|+.++||+|+.+.+.+..+...++++.++....
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 3588999999999999999999999998998877766543
No 176
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.54 E-value=0.009 Score=58.27 Aligned_cols=60 Identities=17% Similarity=0.158 Sum_probs=51.6
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEE
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v 183 (252)
.-|--|+++.|+.|......+.+++..+|.+.+-.|+... ...+|++.++|++++ ||+.+
T Consensus 119 ~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~~ 181 (515)
T TIGR03140 119 LHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGEEF 181 (515)
T ss_pred eEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCcEE
Confidence 3477899999999999999999999999999988888764 568999999999976 66544
No 177
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.026 Score=51.52 Aligned_cols=105 Identities=13% Similarity=0.174 Sum_probs=77.9
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcC----CCchhhhHHHHHHHHHHHCC----C-----ceEEEEeccCCC---C
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKD----GFAECGLLMQCLEELARKYP----A-----TKFVKIISTDCI---P 164 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~----wc~~Ck~l~~~l~~LA~ky~----~-----vkFvkI~~~~~~---~ 164 (252)
.|+.++++.|...++..+.+..+||.|.|. .|.-|+.....+..+|..+. . +-|+.||.++.+ +
T Consensus 41 ~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~Fq 120 (331)
T KOG2603|consen 41 GVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQVFQ 120 (331)
T ss_pred CeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHHHH
Confidence 589999999999999877778889999875 59999999999999998642 2 458899988765 7
Q ss_pred CCCCCcccEEEEEEC--CeEEEEeecccccC-CCCCHHHHHHHHHh
Q 025454 165 NYPDRNLPTVLVYNN--GAVKANYVGLRSFG-RRCTPEGVALVLCQ 207 (252)
Q Consensus 165 ~~~i~~lPTlliy~~--G~~v~~~vG~~~~G-~~~~~e~lE~~L~~ 207 (252)
.+++.++|+|.+|.- |... ..+....+ -.+..+.+..|..+
T Consensus 121 ~l~ln~~P~l~~f~P~~~n~~--~s~~~d~~~~g~~Ae~iaqfv~~ 164 (331)
T KOG2603|consen 121 QLNLNNVPHLVLFSPAKGNKK--RSDQMDQQDLGFEAEQIAQFVAD 164 (331)
T ss_pred HhcccCCCeEEEeCCCccccc--cCccchhhhcchhHHHHHHHHHH
Confidence 899999999999943 3333 11111111 11236777777765
No 178
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.13 E-value=0.02 Score=40.67 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=38.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-------CCCCCCCCcccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-------CIPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-------~~~~~~i~~lPTlliy~~G~~v~ 184 (252)
|+.|+.+||+.|+.....|++. ++.|..++... +.+..+-..+|++ |.||+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v--~i~~~~iG 63 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQI--FFNEKLVG 63 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5677889999999999888863 46666666543 2233456788987 56787655
No 179
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=96.13 E-value=0.032 Score=51.75 Aligned_cols=99 Identities=14% Similarity=0.145 Sum_probs=64.2
Q ss_pred CCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhh-----HHHHHHHHHHHC---CCceEEEEeccC---CCCCCC
Q 025454 99 FGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGL-----LMQCLEELARKY---PATKFVKIISTD---CIPNYP 167 (252)
Q Consensus 99 fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~-----l~~~l~~LA~ky---~~vkFvkI~~~~---~~~~~~ 167 (252)
.-.|..++..||.+.+.+.. .++|+||.|--..-.. |..++-+||++- .++.|..||+.+ ++++++
T Consensus 33 kDRVi~LneKNfk~~lKkyd---~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLg 109 (383)
T PF01216_consen 33 KDRVIDLNEKNFKRALKKYD---VLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLG 109 (383)
T ss_dssp S--CEEE-TTTHHHHHHH-S---EEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT
T ss_pred ccceEEcchhHHHHHHHhhc---EEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcC
Confidence 34699999999999998875 7788888876433222 233334455543 459999999974 569999
Q ss_pred CCcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 168 DRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 168 i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
+.-.+++.+|++|+.+.-. | .++++.|-.||..
T Consensus 110 v~E~~SiyVfkd~~~IEyd-G------~~saDtLVeFl~d 142 (383)
T PF01216_consen 110 VEEEGSIYVFKDGEVIEYD-G------ERSADTLVEFLLD 142 (383)
T ss_dssp --STTEEEEEETTEEEEE--S--------SHHHHHHHHHH
T ss_pred ccccCcEEEEECCcEEEec-C------ccCHHHHHHHHHH
Confidence 9999999999999987533 4 3567777666654
No 180
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=96.08 E-value=0.019 Score=41.46 Aligned_cols=34 Identities=21% Similarity=0.193 Sum_probs=27.7
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPA-TKFVKI 157 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI 157 (252)
|+.|+.+.|+.|..+.+.+.++...++. ++|...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~ 35 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYR 35 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEe
Confidence 4689999999999999999999766554 666655
No 181
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.07 E-value=0.061 Score=43.09 Aligned_cols=99 Identities=11% Similarity=0.233 Sum_probs=68.7
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCC---C-chh-hhHHHHHHHHHHHCCC--ceEEEEeccC---CCCCCCCC-
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDG---F-AEC-GLLMQCLEELARKYPA--TKFVKIISTD---CIPNYPDR- 169 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~w---c-~~C-k~l~~~l~~LA~ky~~--vkFvkI~~~~---~~~~~~i~- 169 (252)
.|.+|+.+++....-..+ .++||-|. |. | ..+ ..+...|.++|++|.+ +.|+.+++++ ..+.|++.
T Consensus 3 ~~~~l~~~~~~~~~C~~~--~~C~i~~l-~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 3 EIIELTSEDVFEETCEEK--QLCIIAFL-PHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred ceEEecCHHHHHhhccCC--CeEEEEEc-CccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 578888777766544332 46666663 32 2 222 4677889999999975 7999999875 45788885
Q ss_pred -cccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 170 -NLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 170 -~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.+|+++++..... ++.- +...++.+.|..|+..
T Consensus 80 ~~~P~v~i~~~~~~--KY~~---~~~~~t~e~i~~Fv~~ 113 (130)
T cd02983 80 FGYPAMVAINFRKM--KFAT---LKGSFSEDGINEFLRE 113 (130)
T ss_pred cCCCEEEEEecccC--cccc---ccCccCHHHHHHHHHH
Confidence 5999999987543 2211 2235889999999987
No 182
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.06 E-value=0.021 Score=40.34 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=37.9
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCC------CCCCCCcccEEEEEECCeEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCI------PNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~------~~~~i~~lPTlliy~~G~~v 183 (252)
|+.|..+||+.|......|... ++.|..++.+.-. ...+...+|.+ |.+|+.+
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~i 61 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGELI 61 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEEE
Confidence 5678899999999999888753 4566666654321 22477899997 6778754
No 183
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.98 E-value=0.012 Score=42.21 Aligned_cols=54 Identities=17% Similarity=0.184 Sum_probs=36.4
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v~ 184 (252)
|+.|+.+||+.|+.....|.++. +.|-.++.+.. ....+..++|++ |.+|+.++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~-----i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~~ig 61 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG-----VTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDVHVG 61 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC-----CCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCEEEc
Confidence 35678899999999999998643 44444444321 233467889997 56787553
No 184
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.93 E-value=0.027 Score=39.75 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=37.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCC-cccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDR-NLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~-~lPTlliy~~G~~v~ 184 (252)
|+.|+.+||+.|+.....|.++ ++.|..++.+.. ...++.. .+|++ |.+|+.++
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g~~ig 63 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGDVHIG 63 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECCEEEe
Confidence 5678889999999999888764 456666655432 1234555 89976 57787654
No 185
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.029 Score=43.46 Aligned_cols=79 Identities=18% Similarity=0.188 Sum_probs=46.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCC--------CCCCCCcccEEEEEECCeEEEEeecccccCCC
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCI--------PNYPDRNLPTVLVYNNGAVKANYVGLRSFGRR 195 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~--------~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~ 195 (252)
||-|..+||+.|+.+...|.. .-+..+++.+|...-. +--+-+.+|.+ |.+|+.++...-+..+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~v--FI~Gk~iGG~~dl~~l--- 87 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNV--FIGGKFIGGASDLMAL--- 87 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEE--EECCEEEcCHHHHHHH---
Confidence 566889999999998888877 2233567777654211 22344588886 4578776432222111
Q ss_pred CCHHHHHHHHHhcCC
Q 025454 196 CTPEGVALVLCQSDP 210 (252)
Q Consensus 196 ~~~e~lE~~L~~~g~ 210 (252)
-....|..+|.+.|+
T Consensus 88 h~~G~L~~~l~~~~~ 102 (104)
T KOG1752|consen 88 HKSGELVPLLKEAGA 102 (104)
T ss_pred HHcCCHHHHHHHhhc
Confidence 011345556665554
No 186
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=95.65 E-value=0.056 Score=41.02 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=37.4
Q ss_pred eEEEEEE----cCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEEE
Q 025454 122 WVVVILY----KDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 122 ~VVV~fy----a~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v~ 184 (252)
.|||+-. ++|||.|+.....|..+- +.|..++...- ....+...+|.+ |.+|+.++
T Consensus 13 ~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~-----i~~~~~di~~~~~~~~~l~~~tg~~tvP~v--fi~g~~iG 79 (97)
T TIGR00365 13 PVVLYMKGTPQFPQCGFSARAVQILKACG-----VPFAYVNVLEDPEIRQGIKEYSNWPTIPQL--YVKGEFVG 79 (97)
T ss_pred CEEEEEccCCCCCCCchHHHHHHHHHHcC-----CCEEEEECCCCHHHHHHHHHHhCCCCCCEE--EECCEEEe
Confidence 4666654 389999999998887753 55666665321 133456689987 56787654
No 187
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=95.50 E-value=0.12 Score=45.94 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.8
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHHH
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELARK 148 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~k 148 (252)
.++.+|+.|..+.||.|+.+.+.+..+...
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 346789999999999999999988776543
No 188
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.41 E-value=0.028 Score=39.87 Aligned_cols=56 Identities=20% Similarity=0.432 Sum_probs=37.1
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC------CCCCCCCcccEEEEEECCeEEEEeecc
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC------IPNYPDRNLPTVLVYNNGAVKANYVGL 189 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~------~~~~~i~~lPTlliy~~G~~v~~~vG~ 189 (252)
..|..++|+.|+.....|.+. ++.|-.++...- ....+...+|++++ +|.. .+.|+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~--~~~G~ 63 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL--SWSGF 63 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc--EEecc
Confidence 457789999999999888753 466666665422 12347789999755 4532 34554
No 189
>PRK10824 glutaredoxin-4; Provisional
Probab=95.34 E-value=0.029 Score=44.24 Aligned_cols=91 Identities=7% Similarity=0.109 Sum_probs=48.7
Q ss_pred hHHHHHHcCCCCceEEEEEEc----CCCchhhhHHHHHHHHHHHCCCceEEEEeccC-----CCCCCCCCcccEEEEEEC
Q 025454 109 DFVREVSQAPPDVWVVVILYK----DGFAECGLLMQCLEELARKYPATKFVKIISTD-----CIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 109 ~f~~~V~~~~~~~~VVV~fya----~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-----~~~~~~i~~lPTlliy~~ 179 (252)
++++.+.+.. .|||+-.. ||||.|+.....|..+...| ..+.|+.+. +...-+-..+|. ||.+
T Consensus 6 ~~v~~~I~~~---~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~---~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~ 77 (115)
T PRK10824 6 EKIQRQIAEN---PILLYMKGSPKLPSCGFSAQAVQALSACGERF---AYVDILQNPDIRAELPKYANWPTFPQ--LWVD 77 (115)
T ss_pred HHHHHHHhcC---CEEEEECCCCCCCCCchHHHHHHHHHHcCCCc---eEEEecCCHHHHHHHHHHhCCCCCCe--EEEC
Confidence 4444444443 46665443 69999999999998874333 223333221 112224456776 4668
Q ss_pred CeEEEEeecccccCCCCCHHHHHHHHHhcCC
Q 025454 180 GAVKANYVGLRSFGRRCTPEGVALVLCQSDP 210 (252)
Q Consensus 180 G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~ 210 (252)
|+.++..--+..+ .....|..+|...|+
T Consensus 78 G~~IGG~ddl~~l---~~~G~L~~lL~~~~~ 105 (115)
T PRK10824 78 GELVGGCDIVIEM---YQRGELQQLIKETAA 105 (115)
T ss_pred CEEEcChHHHHHH---HHCCCHHHHHHHHHh
Confidence 8877533222211 112346666666665
No 190
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.31 E-value=0.051 Score=40.47 Aligned_cols=55 Identities=18% Similarity=0.160 Sum_probs=37.0
Q ss_pred eEEEEEEc----CCCchhhhHHHHHHHHHHHCCCceEEEEeccC-------CCCCCCCCcccEEEEEECCeEE
Q 025454 122 WVVVILYK----DGFAECGLLMQCLEELARKYPATKFVKIISTD-------CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 122 ~VVV~fya----~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-------~~~~~~i~~lPTlliy~~G~~v 183 (252)
+|||+-.. +||+.|+.....|..+. +.|..++... +....+-..+|++ |.+|+.+
T Consensus 9 ~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~-----i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~g~~i 74 (90)
T cd03028 9 PVVLFMKGTPEEPRCGFSRKVVQILNQLG-----VDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVNGELV 74 (90)
T ss_pred CEEEEEcCCCCCCCCcHHHHHHHHHHHcC-----CCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EECCEEE
Confidence 46665443 79999999998887764 4555555422 2234567789997 5688764
No 191
>PRK10638 glutaredoxin 3; Provisional
Probab=94.95 E-value=0.076 Score=38.65 Aligned_cols=54 Identities=17% Similarity=0.158 Sum_probs=37.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlliy~~G~~v~ 184 (252)
|+.|..+||+.|+.....|+.. ++.|..++.+.- ....+...+|++ |.+|+.++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i--~~~g~~ig 64 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQI--FIDAQHIG 64 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEE--EECCEEEe
Confidence 5567789999999999888864 355555655321 234466789987 45787654
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=94.68 E-value=0.062 Score=44.02 Aligned_cols=37 Identities=27% Similarity=0.398 Sum_probs=32.0
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEE
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKI 157 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI 157 (252)
...|+.|+...||+|+.+.+.+..+..++++ +.|..+
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~ 53 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKV 53 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEc
Confidence 5789999999999999999999999999975 665544
No 193
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=94.58 E-value=0.18 Score=39.22 Aligned_cols=98 Identities=10% Similarity=0.088 Sum_probs=67.5
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHH---CCC-ceEEEEeccC---CCCCCCCCc--cc
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARK---YPA-TKFVKIISTD---CIPNYPDRN--LP 172 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~k---y~~-vkFvkI~~~~---~~~~~~i~~--lP 172 (252)
|++++.+++..... .+ .+..+.|+ .-..-..+...+..+|++ |.+ +.|+.+|++. ....|+++. +|
T Consensus 1 ~~e~t~e~~~~~~~-~~--~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTE-EG--LPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhc-CC--CCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 56788888865443 32 44555555 333457788999999999 977 9999999875 357788886 99
Q ss_pred EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 173 TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
++.+...... ..+.. +...++.+.|..|+...
T Consensus 76 ~i~i~~~~~~-~Ky~~---~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 76 VIAIDSFRHM-YLFPD---FEDVYVPGKLKQFVLDL 107 (111)
T ss_pred EEEEEcchhc-CcCCC---CccccCHHHHHHHHHHH
Confidence 9988876321 12211 12357889999988763
No 194
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=94.27 E-value=0.25 Score=38.41 Aligned_cols=94 Identities=14% Similarity=0.189 Sum_probs=61.4
Q ss_pred EcChhhHHHHHHcCCCCceEEEEE---EcCCCchhhhHHHHHHHHHHHCC--CceEEEEeccC---CCCCCCCCc----c
Q 025454 104 PISGSDFVREVSQAPPDVWVVVIL---YKDGFAECGLLMQCLEELARKYP--ATKFVKIISTD---CIPNYPDRN----L 171 (252)
Q Consensus 104 eIs~~~f~~~V~~~~~~~~VVV~f---ya~wc~~Ck~l~~~l~~LA~ky~--~vkFvkI~~~~---~~~~~~i~~----l 171 (252)
+++.+++.... ..+ .+++.+ |+..-..-..+...+..+|++|. .+.|+-+|+++ ..+.|++.. +
T Consensus 3 ~~~~en~~~~~-~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFT-KKP---LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhc-cCC---eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 45666666553 222 344432 22333445678899999999998 49999999874 346788874 9
Q ss_pred cEEEEEECCeEEEEeecccccCCCC-CHHHHHHHHHh
Q 025454 172 PTVLVYNNGAVKANYVGLRSFGRRC-TPEGVALVLCQ 207 (252)
Q Consensus 172 PTlliy~~G~~v~~~vG~~~~G~~~-~~e~lE~~L~~ 207 (252)
|++.++.... .++. +-..+ +.+.|..|+..
T Consensus 79 P~~~i~~~~~--~KY~----~~~~~~t~e~i~~F~~~ 109 (111)
T cd03073 79 PVVAIRTAKG--KKYV----MEEEFSDVDALEEFLED 109 (111)
T ss_pred CEEEEEeCCC--CccC----CCcccCCHHHHHHHHHH
Confidence 9999977432 2222 11245 88999988875
No 195
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=94.05 E-value=0.12 Score=41.52 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=32.7
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHC--CC-ceEEEEec
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKY--PA-TKFVKIIS 159 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky--~~-vkFvkI~~ 159 (252)
..++|+.|+...||+|+.+.+.+..+.++| ++ ++|+-...
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 357899999999999999999999999998 44 77776644
No 196
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=93.89 E-value=0.093 Score=50.01 Aligned_cols=54 Identities=20% Similarity=0.226 Sum_probs=39.4
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCC---------------CCCCCCcccEEEEEECCeEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCI---------------PNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~---------------~~~~i~~lPTlliy~~G~~v~ 184 (252)
|+-|..+|||.|+.....|.+. ++.|..|+.++-. ...+.+++|++++ +|+.++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ig 72 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVHIG 72 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEEEe
Confidence 6778899999999999888774 4777777765322 1146789999866 776543
No 197
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=93.84 E-value=0.15 Score=42.73 Aligned_cols=78 Identities=9% Similarity=0.045 Sum_probs=40.8
Q ss_pred ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHH-HHHH--HHHHCC-CceEEEEeccCCC---CCC--------CCCc
Q 025454 106 SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQ-CLEE--LARKYP-ATKFVKIISTDCI---PNY--------PDRN 170 (252)
Q Consensus 106 s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~-~l~~--LA~ky~-~vkFvkI~~~~~~---~~~--------~i~~ 170 (252)
+.+.|..+-.+. ++|+|+++.+||.-|+.|.. .|.. +|.-.. ..--|+||.++-+ ..| +.-+
T Consensus 26 ~~ea~~~Ak~e~---KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gG 102 (163)
T PF03190_consen 26 GEEALEKAKKEN---KPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGG 102 (163)
T ss_dssp SHHHHHHHHHHT-----EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---
T ss_pred CHHHHHHHHhcC---CcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCC
Confidence 455666665543 69999999999999999985 3322 232211 1223455666432 233 6779
Q ss_pred ccEEEEEE-CCeEEEEe
Q 025454 171 LPTVLVYN-NGAVKANY 186 (252)
Q Consensus 171 lPTlliy~-~G~~v~~~ 186 (252)
.|+.++.- +|+++...
T Consensus 103 wPl~vfltPdg~p~~~~ 119 (163)
T PF03190_consen 103 WPLTVFLTPDGKPFFGG 119 (163)
T ss_dssp SSEEEEE-TTS-EEEEE
T ss_pred CCceEEECCCCCeeeee
Confidence 99777764 68887543
No 198
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=93.81 E-value=0.71 Score=34.92 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=61.1
Q ss_pred eEEc-ChhhHHHHHH-cCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC-CCceEEEEeccCCCCCCCCCcccEEEEEE
Q 025454 102 VMPI-SGSDFVREVS-QAPPDVWVVVILYKDGFAECGLLMQCLEELARKY-PATKFVKIISTDCIPNYPDRNLPTVLVYN 178 (252)
Q Consensus 102 v~eI-s~~~f~~~V~-~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky-~~vkFvkI~~~~~~~~~~i~~lPTlliy~ 178 (252)
+..| +.+++...+. ... .+||=|+..--. .+...|.++|..+ ..+.|.-.....+.+.+++. .|++++|+
T Consensus 2 v~~i~~~~~~e~~~~~~~~---~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~-~~~i~l~~ 74 (102)
T cd03066 2 VEIINSERELQAFENIEDD---IKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLK-MNEVDFYE 74 (102)
T ss_pred ceEcCCHHHHHHHhcccCC---eEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCC-CCcEEEeC
Confidence 4567 4555666664 332 444444444322 3566788999998 66999776666666667664 79999998
Q ss_pred CCeEEEEeeccccc-CCCCCHHHHHHHHHhc
Q 025454 179 NGAVKANYVGLRSF-GRRCTPEGVALVLCQS 208 (252)
Q Consensus 179 ~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~~ 208 (252)
+... +...+ |..++.+.|..|+...
T Consensus 75 ~~~e-----~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 75 PFME-----EPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCCC-----CCcccCCCCCCHHHHHHHHHHh
Confidence 7321 11234 4467889999998754
No 199
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.63 E-value=0.089 Score=45.15 Aligned_cols=39 Identities=18% Similarity=0.219 Sum_probs=33.2
Q ss_pred ceEEEEEEcCCCchhhhHHHHH---HHHHHHCCC-ceEEEEec
Q 025454 121 VWVVVILYKDGFAECGLLMQCL---EELARKYPA-TKFVKIIS 159 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l---~~LA~ky~~-vkFvkI~~ 159 (252)
.+.||.|+.-.||+|..+.+.+ ..+.+.+++ ++|+++..
T Consensus 38 ~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 4679999999999999999977 788889984 88887754
No 200
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=93.60 E-value=0.27 Score=48.45 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=52.0
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---CCCCCCCCCcccEEEEEE-CCeEE-EEeecc
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---DCIPNYPDRNLPTVLVYN-NGAVK-ANYVGL 189 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---~~~~~~~i~~lPTlliy~-~G~~v-~~~vG~ 189 (252)
.+++.|+.+.|..|..+...|++++.--+.+++...+.. ...++|++..+|+|.++. +|+.. -+|.|+
T Consensus 368 v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 368 VTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred EEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEec
Confidence 345566677899999999999999988788888766642 356899999999999995 66433 355554
No 201
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=93.09 E-value=0.042 Score=40.28 Aligned_cols=52 Identities=21% Similarity=0.356 Sum_probs=35.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC--------C-CCCCCCcccEEEEEECCeE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC--------I-PNYPDRNLPTVLVYNNGAV 182 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~--------~-~~~~i~~lPTlliy~~G~~ 182 (252)
|+-|..++||.|+.....|.+. ++.|..|+.+.- + ...+.+++|+|++ +|+.
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i--~~~~ 63 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI--GGKH 63 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE--CCEE
Confidence 5667889999999999888843 355555544321 2 2337899999765 5543
No 202
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=93.01 E-value=0.2 Score=41.04 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHCC-CceEEEEeccCCCCCCCCCcccEEEEEECCeE-EEEeecccccCCCCCHHHHHHHHHhcC
Q 025454 137 LLMQCLEELARKYP-ATKFVKIISTDCIPNYPDRNLPTVLVYNNGAV-KANYVGLRSFGRRCTPEGVALVLCQSD 209 (252)
Q Consensus 137 ~l~~~l~~LA~ky~-~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~-v~~~vG~~~~G~~~~~e~lE~~L~~~g 209 (252)
.+...|.++|+.+. .+.|+.+...++.+.+++.. |++++|+.+.. ...+. |..++.+.|..|+..+.
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~-----~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE-PTIVVYKKFDEKPVVYD-----GDKFTPEELKKFIKKNS 75 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS-SEEEEEECTTTSEEEES-----SSTTSHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC-CcEEEeccCCCCceecc-----cccCCHHHHHHHHHHhc
Confidence 34567889999998 59999998777777899988 99999998533 22233 33478899999998753
No 203
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=92.70 E-value=0.44 Score=34.63 Aligned_cols=77 Identities=18% Similarity=0.261 Sum_probs=50.0
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHH
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEG 200 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~ 200 (252)
|+.|..+.|+-|..+...|..++..++ +.+-.||... +..+|+. .+|.+.+=..+.... ...+...++.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~~-~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~----~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEFP-FELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKE----QEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTST-CEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCT----SEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhcC-ceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccc----cceeCCCCCHHH
Confidence 678899999999999999999877766 6666777653 3478885 799865522111000 000134678899
Q ss_pred HHHHHH
Q 025454 201 VALVLC 206 (252)
Q Consensus 201 lE~~L~ 206 (252)
|..+|.
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 988874
No 204
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=92.39 E-value=0.99 Score=36.04 Aligned_cols=101 Identities=12% Similarity=0.214 Sum_probs=64.4
Q ss_pred eEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHH-HHC---CCceEEEEecc--------CCCCCCCC-
Q 025454 102 VMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELA-RKY---PATKFVKIIST--------DCIPNYPD- 168 (252)
Q Consensus 102 v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA-~ky---~~vkFvkI~~~--------~~~~~~~i- 168 (252)
.+.++.-+|...|... +.++|.|=. --|--.-...|.++| +.. +++-++.|... +++++|++
T Consensus 6 ~v~LD~~tFdKvi~kf---~~~LVKFD~--ayPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ 80 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKF---KYVLVKFDV--AYPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID 80 (126)
T ss_dssp SEEESTTHHHHHGGGS---SEEEEEEEE--SS--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S
T ss_pred eeeccceehhheeccC---ceEEEEEec--cCCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC
Confidence 4678888999999876 589999943 223344466777777 433 45777777543 24578888
Q ss_pred -CcccEEEEEECC-eEEEEeecccccCCCCCHHHHHHHHHhcCCC
Q 025454 169 -RNLPTVLVYNNG-AVKANYVGLRSFGRRCTPEGVALVLCQSDPV 211 (252)
Q Consensus 169 -~~lPTlliy~~G-~~v~~~vG~~~~G~~~~~e~lE~~L~~~g~i 211 (252)
.++|.+++|..| +..-++ .....++.+.|..|+.++..+
T Consensus 81 ke~fPv~~LF~~~~~~pv~~----p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 81 KEDFPVIYLFVGDKEEPVRY----PFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp CCC-SEEEEEESSTTSEEEE-----TCS-S-HHHHHHHHHHTSS-
T ss_pred cccCCEEEEecCCCCCCccC----CccCCccHHHHHHHHHhCCCe
Confidence 789999999954 222222 112468899999999987443
No 205
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.25 E-value=0.92 Score=40.16 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=44.8
Q ss_pred ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEE
Q 025454 101 SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKI 157 (252)
Q Consensus 101 ~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI 157 (252)
.|+.+++........=...++|+||.|.+=.||+=..--+.|.+|+++|.+ +.|+-|
T Consensus 83 ~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~V 140 (237)
T PF00837_consen 83 PVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIV 140 (237)
T ss_pred ceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehh
Confidence 477787666444443333457999999999999999999999999999998 678766
No 206
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=89.61 E-value=2.6 Score=31.97 Aligned_cols=97 Identities=12% Similarity=0.188 Sum_probs=58.7
Q ss_pred eEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC-CCceEEEEeccCCCCCCCCCcccEEEEEEC
Q 025454 102 VMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY-PATKFVKIISTDCIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 102 v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky-~~vkFvkI~~~~~~~~~~i~~lPTlliy~~ 179 (252)
+.+| +.++....+... ..+||=|+..--. .+...|.++|..+ .+..|.-.........|++ .|++++|+-
T Consensus 2 ~~~i~s~~~l~~f~~~~---~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~--~~~ivl~~p 73 (104)
T cd03069 2 SVELRTEAEFEKFLSDD---DASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY--GEGVVLFRP 73 (104)
T ss_pred ccccCCHHHHHHHhccC---CcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC--CCceEEEec
Confidence 3455 445555555433 3455555554332 4677888999999 5699987776666778887 789999953
Q ss_pred CeEEEEe-eccccc-CCCCCHHHHHHHHHh
Q 025454 180 GAVKANY-VGLRSF-GRRCTPEGVALVLCQ 207 (252)
Q Consensus 180 G~~v~~~-vG~~~~-G~~~~~e~lE~~L~~ 207 (252)
......+ -+...+ | .++.+.|..|+..
T Consensus 74 ~~~~~k~de~~~~y~g-~~~~~~l~~fi~~ 102 (104)
T cd03069 74 PRLSNKFEDSSVKFDG-DLDSSKIKKFIRE 102 (104)
T ss_pred hhhhcccCcccccccC-cCCHHHHHHHHHh
Confidence 2100000 111223 3 3568899999875
No 207
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=89.12 E-value=1.7 Score=38.80 Aligned_cols=74 Identities=19% Similarity=0.195 Sum_probs=48.2
Q ss_pred cCCC-ceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEE
Q 025454 97 SRFG-SVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVL 175 (252)
Q Consensus 97 ~~fG-~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTll 175 (252)
..+| ....++..++. +.|++.|+...+.|||.|...+=.|-....+|..+.+.-..++ .... -.++|||+
T Consensus 40 v~~~~~~~kvsn~d~~------~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~-~~d~--~pn~Ptl~ 110 (249)
T PF06053_consen 40 VPIGSNFFKVSNQDLA------PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSD-PYDN--YPNTPTLI 110 (249)
T ss_pred cCCCcceeeecCcccC------CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecC-cccC--CCCCCeEE
Confidence 3466 66666654422 3568999999999999999988777777778887633222222 1111 24689988
Q ss_pred EEEC
Q 025454 176 VYNN 179 (252)
Q Consensus 176 iy~~ 179 (252)
+..-
T Consensus 111 F~~~ 114 (249)
T PF06053_consen 111 FNNY 114 (249)
T ss_pred EecC
Confidence 7543
No 208
>PTZ00062 glutaredoxin; Provisional
Probab=88.60 E-value=1.3 Score=38.31 Aligned_cols=67 Identities=9% Similarity=0.048 Sum_probs=40.3
Q ss_pred hhHHHHHHcCCCCceEEEEEE----cCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCCCCcccEEEE
Q 025454 108 SDFVREVSQAPPDVWVVVILY----KDGFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYPDRNLPTVLV 176 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fy----a~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~i~~lPTlli 176 (252)
.++++.+.++. +|||.-. .|+|+.|+.+...|..+ ++.|..+|..+- .+..+...+|.+
T Consensus 103 ~~~v~~li~~~---~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqV-- 172 (204)
T PTZ00062 103 VEKIERLIRNH---KILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQL-- 172 (204)
T ss_pred HHHHHHHHhcC---CEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeE--
Confidence 34455555443 4666544 27999999999888864 356666665421 122344567765
Q ss_pred EECCeEEE
Q 025454 177 YNNGAVKA 184 (252)
Q Consensus 177 y~~G~~v~ 184 (252)
|.+|+.++
T Consensus 173 fI~G~~IG 180 (204)
T PTZ00062 173 YVNGELIG 180 (204)
T ss_pred EECCEEEc
Confidence 56787654
No 209
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.50 E-value=3.8 Score=30.97 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=38.1
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEEEEECCe
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~ 181 (252)
+|.++++.+.-..|..+...++.+|.--+.+++...+... ..|++.+..+|+
T Consensus 20 pV~l~~f~~~~~~~~e~~~ll~e~a~lSdkI~~~~~~~~~--------~~P~~~i~~~~~ 71 (94)
T cd02974 20 PVELVASLDDSEKSAELLELLEEIASLSDKITLEEDNDDE--------RKPSFSINRPGE 71 (94)
T ss_pred CEEEEEEeCCCcchHHHHHHHHHHHHhCCceEEEEecCCC--------CCCEEEEecCCC
Confidence 5666666544499999999999999988877764332211 479999998883
No 210
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=87.20 E-value=3.7 Score=31.52 Aligned_cols=100 Identities=7% Similarity=0.094 Sum_probs=58.4
Q ss_pred eEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC-CCceEEEEeccCCCCCCCCCcccEEEEEEC
Q 025454 102 VMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY-PATKFVKIISTDCIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 102 v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky-~~vkFvkI~~~~~~~~~~i~~lPTlliy~~ 179 (252)
+.+| +.+++...+.... ..+||=|+..--+ .+...+.++|..+ ....|.-.....+..++++. .|++++|+-
T Consensus 2 v~~i~s~~ele~f~~~~~--~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~-~~~vvl~rp 75 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGD--DVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVS-PGQLVVFQP 75 (107)
T ss_pred ceEcCCHHHHHHHHhcCC--CEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCC-CCceEEECc
Confidence 4566 4455655554431 2455555544322 4567788999998 56999777666666777764 678888865
Q ss_pred CeEEEEe-eccccc-CCCCCH-HHHHHHHHh
Q 025454 180 GAVKANY-VGLRSF-GRRCTP-EGVALVLCQ 207 (252)
Q Consensus 180 G~~v~~~-vG~~~~-G~~~~~-e~lE~~L~~ 207 (252)
-.+...+ -+...+ |...+. ++|..||..
T Consensus 76 ~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 76 EKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 4443222 112223 442344 448888864
No 211
>PHA03075 glutaredoxin-like protein; Provisional
Probab=81.90 E-value=1.4 Score=34.88 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=27.1
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCC
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYP 150 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~ 150 (252)
.+++.|..|-|+.|+..+.+|..|..+|.
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 58999999999999999999999999986
No 212
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=80.91 E-value=2.6 Score=34.45 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=28.3
Q ss_pred ceEEEEEE-cCCCchhhhH-HHHHHHHHHHCC--Cc-eEEEEec
Q 025454 121 VWVVVILY-KDGFAECGLL-MQCLEELARKYP--AT-KFVKIIS 159 (252)
Q Consensus 121 ~~VVV~fy-a~wc~~Ck~l-~~~l~~LA~ky~--~v-kFvkI~~ 159 (252)
++||+.|| +.||+.|..- .+.|.....+|. ++ .++-|..
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~ 73 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSV 73 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEEC
Confidence 45666665 7899999997 888888888874 35 3665543
No 213
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=79.59 E-value=11 Score=36.65 Aligned_cols=61 Identities=15% Similarity=0.126 Sum_probs=44.9
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEEEEECCeEE-EEeecc
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVK-ANYVGL 189 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~v-~~~vG~ 189 (252)
.+|.+++|.+.|..|..+...|++|++--+.+++...+.. ...|+|.+..+|+-. -+|.|+
T Consensus 19 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~--------~~~p~~~~~~~~~~~~i~f~g~ 80 (517)
T PRK15317 19 RPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD--------VRKPSFSITRPGEDTGVRFAGI 80 (517)
T ss_pred CCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC--------CCCCEEEEEcCCccceEEEEec
Confidence 3677888888999999999999999998888776442211 248999999887553 344443
No 214
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=77.22 E-value=3.4 Score=33.99 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=31.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
|..||..-||.|-...+.|.++.+.|+++++.....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~ 37 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPF 37 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecc
Confidence 678899999999999999999999998877766543
No 215
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=74.50 E-value=6 Score=32.42 Aligned_cols=47 Identities=21% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCchhhhHHHHHHHHHHHCCCceEEEEeccCC-------CCCCC----CCcccEEEEEECCeEEE
Q 025454 131 GFAECGLLMQCLEELARKYPATKFVKIISTDC-------IPNYP----DRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 131 wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~-------~~~~~----i~~lPTlliy~~G~~v~ 184 (252)
+|+.|+.+...|+.+ .+.|-.+|.+.- ...++ -..+|.++ .+|+.++
T Consensus 15 t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVF--I~G~~IG 72 (147)
T cd03031 15 TFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVF--VDGRYLG 72 (147)
T ss_pred cChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEE--ECCEEEe
Confidence 899999999988775 377777776431 12222 25788765 5676654
No 216
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.36 E-value=2.3 Score=31.16 Aligned_cols=55 Identities=22% Similarity=0.375 Sum_probs=35.5
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc-----------------CCCCCCCCCcccEEEEEECCeEE
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIIST-----------------DCIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~-----------------~~~~~~~i~~lPTlliy~~G~~v 183 (252)
+.|++.-||.|.-.-..|+++-- +..||.|-.. +-++.++--++|++++ .+|+.|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v---~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~vV 76 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV---DYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGKVV 76 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC---CceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCcEE
Confidence 67999999999876655555443 3445555221 1235666778999887 566655
No 217
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=73.74 E-value=22 Score=34.64 Aligned_cols=61 Identities=16% Similarity=0.278 Sum_probs=44.3
Q ss_pred eEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEEEEECCeEE-EEeecc
Q 025454 122 WVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVK-ANYVGL 189 (252)
Q Consensus 122 ~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~v-~~~vG~ 189 (252)
+|.++++.+.|..|..+...|+++++--+.+++...+.. ....|+|.++.+|+-. -+|.|+
T Consensus 20 ~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~-------~~~~p~~~~~~~~~~~~i~f~g~ 81 (515)
T TIGR03140 20 PVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTAD-------TLRKPSFTILRDGADTGIRFAGI 81 (515)
T ss_pred CEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCC-------cCCCCeEEEecCCcccceEEEec
Confidence 577777766899999999999999998887777433321 2356999999888643 345553
No 218
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=72.77 E-value=0.91 Score=41.64 Aligned_cols=58 Identities=10% Similarity=0.185 Sum_probs=45.3
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec-c---CCCCCCCCCcccEEEEEE
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS-T---DCIPNYPDRNLPTVLVYN 178 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~-~---~~~~~~~i~~lPTlliy~ 178 (252)
-+|-+.||+.||+..+...|.+.-....|+.+.-.-++- . ....+|++.+.|++++-.
T Consensus 77 ~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n 138 (319)
T KOG2640|consen 77 DYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLN 138 (319)
T ss_pred CcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeec
Confidence 478999999999999999999999999998644333322 1 234889999999988754
No 219
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=70.06 E-value=67 Score=27.19 Aligned_cols=59 Identities=32% Similarity=0.450 Sum_probs=40.8
Q ss_pred cCCCceEEcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEE
Q 025454 97 SRFGSVMPISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKI 157 (252)
Q Consensus 97 ~~fG~v~eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI 157 (252)
...|+...++.++.++.|.+++.+ ||||.|-.....-=-.=...|..++ .||++..+-+
T Consensus 30 ~S~GNPT~lsG~elV~lIk~a~~D-PV~VMfDD~G~~g~G~GE~Al~~v~-~h~~IeVLG~ 88 (180)
T PF14097_consen 30 QSAGNPTPLSGEELVELIKQAPHD-PVLVMFDDKGFIGEGPGEQALEYVA-NHPDIEVLGA 88 (180)
T ss_pred ccCCCCCcCCHHHHHHHHHhCCCC-CEEEEEeCCCCCCCCccHHHHHHHH-cCCCceEEEE
Confidence 457899999999999999998654 9999996544332222234555544 5777666544
No 220
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.17 E-value=13 Score=35.35 Aligned_cols=73 Identities=18% Similarity=0.225 Sum_probs=55.6
Q ss_pred hhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---CCCCCCCCCcccEEEEEECCeEE
Q 025454 108 SDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---DCIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 108 ~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---~~~~~~~i~~lPTlliy~~G~~v 183 (252)
++..+.|..- .+.+-+=-+++-.|..|--+-+.|+-++--.|.++-+.|+.. +-.+.-+|.++||+ |.||+..
T Consensus 105 q~vieqik~i-~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtv--flnGe~f 180 (520)
T COG3634 105 QDVIEQIKAI-DGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTV--FLNGEEF 180 (520)
T ss_pred HHHHHHHHhc-CCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceE--EEcchhh
Confidence 3444445443 244666777888999999999999999999999999999874 33566789999996 5688654
No 221
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=66.86 E-value=19 Score=22.26 Aligned_cols=34 Identities=12% Similarity=0.097 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCCCCCCCCCCCcchHHHHHHHHH
Q 025454 195 RCTPEGVALVLCQSDPVLNDGQSGSDPSRKTVLEGVRK 232 (252)
Q Consensus 195 ~~~~e~lE~~L~~~g~i~~~~~~~~~~~~~~~~~~~~~ 232 (252)
..+.++|..+|..+|+..+... .+|++.+..+++
T Consensus 3 tWs~~~L~~wL~~~gi~~~~~~----~~rd~Ll~~~k~ 36 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPKSA----KTRDELLKLAKK 36 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCCCC----CCHHHHHHHHHH
Confidence 3577999999999998877654 458888887764
No 222
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=66.46 E-value=4.2 Score=26.67 Aligned_cols=53 Identities=19% Similarity=0.173 Sum_probs=32.1
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-----CCCCCCCCcccEEEEEECCeEE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-----CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-----~~~~~~i~~lPTlliy~~G~~v 183 (252)
.|+.++|+.|..+.-.|....-. .....++... ..+..+-..+|++.. +|..+
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~--~~~~~ 60 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGLP---YELVPVDLGEGEQEEFLALNPLGKVPVLED--GGLVL 60 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEeCCCCCCCHHHHhcCCCCCCCEEEE--CCEEE
Confidence 46778999999888777665322 2333443322 123467778998764 45443
No 223
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=66.08 E-value=11 Score=32.62 Aligned_cols=38 Identities=13% Similarity=0.014 Sum_probs=31.5
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEe
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKII 158 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~ 158 (252)
...++.|+...|++|+.+.+.+.+....++.++|+..+
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~ 122 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLRE 122 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEE
Confidence 57888999999999999999998877778777666553
No 224
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=63.93 E-value=11 Score=31.44 Aligned_cols=32 Identities=19% Similarity=0.189 Sum_probs=25.0
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPA-TKFVKI 157 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI 157 (252)
+|..|.|+.|-.+.|.|.+|...|+. +.|--|
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 68999999999999999999999997 554444
No 225
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=62.89 E-value=13 Score=30.82 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=29.7
Q ss_pred CCceEEEEEE-cCCCchhhhHHHHHHHHHHHCCC--ceEEEE
Q 025454 119 PDVWVVVILY-KDGFAECGLLMQCLEELARKYPA--TKFVKI 157 (252)
Q Consensus 119 ~~~~VVV~fy-a~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI 157 (252)
.|++||++|| ..+++.|..-.-.|+.+..+|.. +..+-|
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GI 70 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGI 70 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3468999999 57889999888888888777654 555555
No 226
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=62.62 E-value=10 Score=33.62 Aligned_cols=42 Identities=21% Similarity=0.195 Sum_probs=34.0
Q ss_pred CCceEEEEEEcCCCchhhhHHHHHHHHHH-----HCCCceEEEEecc
Q 025454 119 PDVWVVVILYKDGFAECGLLMQCLEELAR-----KYPATKFVKIIST 160 (252)
Q Consensus 119 ~~~~VVV~fya~wc~~Ck~l~~~l~~LA~-----ky~~vkFvkI~~~ 160 (252)
.|..+||-|-..+|..|..-...|+.|.. -|++|.|+-|+..
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 55677888888899999998888888774 4678999999764
No 227
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=61.55 E-value=6.9 Score=29.51 Aligned_cols=30 Identities=17% Similarity=0.077 Sum_probs=21.3
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
..|+.++|+.|+.....|... ++.|-.++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi 31 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDY 31 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEee
Confidence 467899999999988777663 344444544
No 228
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=61.40 E-value=32 Score=23.54 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=32.3
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC----CCCCCCCCcccEEEEEECCeEE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~----~~~~~~i~~lPTlliy~~G~~v 183 (252)
.|+.+||+.|..+.-.|....- ...++.++... .....+...+|+|.. .+|..+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~-~~g~~l 60 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL-GNGTVI 60 (71)
T ss_pred EEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE-CCCcEE
Confidence 4567899999988766654332 24455554322 223446678999953 346543
No 229
>COG2118 DNA-binding protein [General function prediction only]
Probab=59.99 E-value=10 Score=29.75 Aligned_cols=20 Identities=45% Similarity=0.738 Sum_probs=16.9
Q ss_pred cHHHHHHHHHHHHHHHHHHh
Q 025454 75 DDRFLEEYRKKRLAEMREAT 94 (252)
Q Consensus 75 Dd~~l~~yR~kRl~el~~~~ 94 (252)
||+.|++.|+++|+||++.+
T Consensus 2 dd~eLEeIRrrkl~eLQrq~ 21 (116)
T COG2118 2 DDEELEEIRRRKLAELQRQA 21 (116)
T ss_pred ChHHHHHHHHHHHHHHHHhh
Confidence 44589999999999999854
No 230
>KOG4752 consensus Ribosomal protein L41 [Translation, ribosomal structure and biogenesis]
Probab=59.87 E-value=12 Score=21.03 Aligned_cols=15 Identities=27% Similarity=0.645 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHh
Q 025454 80 EEYRKKRLAEMREAT 94 (252)
Q Consensus 80 ~~yR~kRl~el~~~~ 94 (252)
+.||++||..|+...
T Consensus 3 ~kwrkkrmrrlkrkr 17 (26)
T KOG4752|consen 3 AKWRKKRMRRLKRKR 17 (26)
T ss_pred hHHHHHHHHHHHHHH
Confidence 589999999997643
No 231
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=59.59 E-value=41 Score=32.47 Aligned_cols=81 Identities=14% Similarity=0.141 Sum_probs=49.7
Q ss_pred HHHHHcCCCCceEEEEEEcCCCchhhhHH--HHHHHHHHHCCC--ceEEEEecc-----CCCCCCCCCcccEEEEE-ECC
Q 025454 111 VREVSQAPPDVWVVVILYKDGFAECGLLM--QCLEELARKYPA--TKFVKIIST-----DCIPNYPDRNLPTVLVY-NNG 180 (252)
Q Consensus 111 ~~~V~~~~~~~~VVV~fya~wc~~Ck~l~--~~l~~LA~ky~~--vkFvkI~~~-----~~~~~~~i~~lPTlliy-~~G 180 (252)
-.+|..+...+-|+|.|-+-.-.....|+ -.....-...-. +.-++|.+. ....-|++..+|+++++ ..|
T Consensus 9 peAIa~aK~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sG 88 (506)
T KOG2507|consen 9 PEAIAEAKGKKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSG 88 (506)
T ss_pred HHHHHHhhcCCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCC
Confidence 34444443445677777777777777777 222222222222 344455543 23467999999988776 569
Q ss_pred eEEEEeecccc
Q 025454 181 AVKANYVGLRS 191 (252)
Q Consensus 181 ~~v~~~vG~~~ 191 (252)
..+..+.|+..
T Consensus 89 tpLevitg~v~ 99 (506)
T KOG2507|consen 89 TPLEVITGFVT 99 (506)
T ss_pred ceeEEeecccc
Confidence 99999998853
No 232
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=57.64 E-value=14 Score=30.42 Aligned_cols=32 Identities=16% Similarity=0.137 Sum_probs=26.8
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCC-CceEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYP-ATKFV 155 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~-~vkFv 155 (252)
|..|+.+.||.|-...+.|.+++++|+ ++.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEE
Confidence 567889999999999999999999994 34443
No 233
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=57.44 E-value=15 Score=24.92 Aligned_cols=52 Identities=12% Similarity=0.182 Sum_probs=31.0
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc-------CCCCCCCCCcccEEEEEECCe
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIIST-------DCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~-------~~~~~~~i~~lPTlliy~~G~ 181 (252)
.|+.++|+.|+.+.-.|....-. .....++.. ...+..+-..+|+|.+ .+|.
T Consensus 3 Ly~~~~s~~~~~~~~~L~~~~l~---~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~-~~~~ 61 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAEKGID---VPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL-DDGT 61 (74)
T ss_pred EEeCCCCcchHHHHHHHHHcCCC---ceEEEeecccCccCCHHHHhhCCCCCCCEEEe-CCCC
Confidence 46678899999988777665332 233344321 1123346678999975 2443
No 234
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=57.14 E-value=15 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHH
Q 025454 163 IPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVL 205 (252)
Q Consensus 163 ~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L 205 (252)
...+++.++||+++ ||+ ..+.|.. ..+.|+..|
T Consensus 160 a~~~gv~GvP~~vv--~g~--~~~~G~~------~~~~l~~~l 192 (193)
T PF01323_consen 160 ARQLGVFGVPTFVV--NGK--YRFFGAD------RLDELEDAL 192 (193)
T ss_dssp HHHTTCSSSSEEEE--TTT--EEEESCS------SHHHHHHHH
T ss_pred HHHcCCcccCEEEE--CCE--EEEECCC------CHHHHHHHh
Confidence 46789999999999 887 4556653 356676665
No 235
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=55.49 E-value=15 Score=29.11 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=23.7
Q ss_pred CCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 164 PNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 164 ~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
.+++|.++|||+| ||+.+ .| ..+.++|..+|.
T Consensus 130 ~~~~i~~tPt~~i--nG~~~---~~------~~~~~~l~~~Id 161 (162)
T PF13462_consen 130 RQLGITGTPTFFI--NGKYV---VG------PYTIEELKELID 161 (162)
T ss_dssp HHHT-SSSSEEEE--TTCEE---ET------TTSHHHHHHHHH
T ss_pred HHcCCccccEEEE--CCEEe---CC------CCCHHHHHHHHc
Confidence 6788999999999 99875 33 356788887775
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=54.72 E-value=19 Score=27.81 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=41.5
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC----------CCCCCCCcccEEEEEECCeEEEEeecccccCC
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC----------IPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~----------~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~ 194 (252)
..|+.++|+.|+.....|.+- ++.|..++..+- ....+. -+.-++=++|.....+ ++..--.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~l~~~~~~--~~~~lin~~~~~~k~l-~~~~~~~ 73 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----GIEYQFIDIGEDGPTREELLDILSLLED--GIDPLLNTRGQSYRAL-NTSNTFL 73 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCceEEEecCCChhhHHHHHHHHHHcCC--CHHHheeCCCcchhhC-Cchhhcc
Confidence 357889999999988777762 455655654321 122221 1222333444443322 1110002
Q ss_pred CCCHHHHHHHHHhcCCC
Q 025454 195 RCTPEGVALVLCQSDPV 211 (252)
Q Consensus 195 ~~~~e~lE~~L~~~g~i 211 (252)
.++.+++-.+|.++..+
T Consensus 74 ~ls~~e~~~~i~~~p~L 90 (117)
T TIGR01617 74 DLSDKEALELLAEDPAL 90 (117)
T ss_pred cCCHHHHHHHHHhCcce
Confidence 56777777777766544
No 237
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=54.56 E-value=11 Score=28.91 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=16.2
Q ss_pred EEEEcCCCchhhhHHHHHHH
Q 025454 125 VILYKDGFAECGLLMQCLEE 144 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~ 144 (252)
..|+.|+|+.|+.....|..
T Consensus 2 ~iy~~~~C~~crka~~~L~~ 21 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA 21 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH
Confidence 46788999999998776655
No 238
>PRK09301 circadian clock protein KaiB; Provisional
Probab=52.84 E-value=36 Score=26.30 Aligned_cols=86 Identities=9% Similarity=-0.006 Sum_probs=58.9
Q ss_pred CceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc---CCCCCCCCCcccEEEEEECCeEEEEeecccccCC
Q 025454 120 DVWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST---DCIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGR 194 (252)
Q Consensus 120 ~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~---~~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~ 194 (252)
+.+++=.|.+...+.++..-..+.++.+.+.. ..+=-||.. ..++.+.|-.+|||+= ..=..+.+++|-
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK-~~P~P~rriiGD----- 78 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAK-ILPPPVRKIIGD----- 78 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhh-cCCCCcceeecc-----
Confidence 35777778888888888888888888776643 222223433 4568999999999653 335677888873
Q ss_pred CCCHHHHHHHHHhcCCCCCC
Q 025454 195 RCTPEGVALVLCQSDPVLND 214 (252)
Q Consensus 195 ~~~~e~lE~~L~~~g~i~~~ 214 (252)
..+.+++|...+.....
T Consensus 79 ---lsd~~kVL~~L~l~~~~ 95 (103)
T PRK09301 79 ---LSDREKVLIGLDLLYEE 95 (103)
T ss_pred ---cccHHHHHHhcCCCchh
Confidence 35677888877654433
No 239
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=52.15 E-value=45 Score=25.77 Aligned_cols=57 Identities=21% Similarity=0.252 Sum_probs=32.7
Q ss_pred eEEEEEE----cCCCchhhhHHHHHHHHHHHCCCceEEEEec--c-CC---CCCCCCCcccEE-EEEECCeEEE
Q 025454 122 WVVVILY----KDGFAECGLLMQCLEELARKYPATKFVKIIS--T-DC---IPNYPDRNLPTV-LVYNNGAVKA 184 (252)
Q Consensus 122 ~VVV~fy----a~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~--~-~~---~~~~~i~~lPTl-liy~~G~~v~ 184 (252)
+||++.- .|.|+.+...-++|..+.. +.|..+|. + ++ .+.| +++||| -+|.+|+.|+
T Consensus 16 ~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~----v~~~~vnVL~d~eiR~~lk~~--s~WPT~PQLyi~GEfvG 83 (105)
T COG0278 16 PVVLFMKGTPEFPQCGFSAQAVQILSACGV----VDFAYVDVLQDPEIRQGLKEY--SNWPTFPQLYVNGEFVG 83 (105)
T ss_pred ceEEEecCCCCCCCCCccHHHHHHHHHcCC----cceeEEeeccCHHHHhccHhh--cCCCCCceeeECCEEec
Confidence 4665542 3556666555555544332 66666654 2 22 3444 467876 5899998775
No 240
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=47.98 E-value=33 Score=23.34 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=30.7
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc-------CCCCCCCCCcccEEEEEECCe
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIIST-------DCIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~-------~~~~~~~i~~lPTlliy~~G~ 181 (252)
.|+.++|+.|+...-.|..+.-. ...+.++.. ......+...+|+|.. +|.
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~gi~---~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~ 60 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKALGLE---LNLKEVNLMKGEHLKPEFLKLNPQHTVPTLVD--NGF 60 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHcCCC---CEEEEecCccCCcCCHHHHhhCcCCCCCEEEE--CCE
Confidence 56788999999877666654333 333444421 1224456668999963 454
No 241
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=47.71 E-value=56 Score=22.04 Aligned_cols=48 Identities=10% Similarity=0.061 Sum_probs=28.1
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC----CCCCCCCcccEEE
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC----IPNYPDRNLPTVL 175 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~----~~~~~i~~lPTll 175 (252)
..|+.++|+.|+.+.-.+....-.| .+..++.... .+-.+...+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi~~---~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGVSV---EIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCCcc---EEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 3466789999999877765543322 3333332221 1334567899774
No 242
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=47.37 E-value=16 Score=28.03 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=21.7
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
..|+.++|+.|+.....|+.. ++.|-.++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi 31 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDI 31 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecc
Confidence 457789999999988777662 455666654
No 243
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=46.91 E-value=20 Score=28.52 Aligned_cols=31 Identities=19% Similarity=0.214 Sum_probs=21.4
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
|..|+.++|+.|+.....|... ++.|-.++.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi 32 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNI 32 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeec
Confidence 4567789999999988776553 344555543
No 244
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=46.41 E-value=6.8 Score=26.94 Aligned_cols=53 Identities=9% Similarity=0.070 Sum_probs=27.9
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---CCCCCCCCcccEEEEEECCeE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---CIPNYPDRNLPTVLVYNNGAV 182 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~~~~~~i~~lPTlliy~~G~~ 182 (252)
.++.++|+.|+.+.-.|....-. ...+.++... ..+..+-..+|+|.. .+|..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl~---~~~~~~~~~~~~~~~~~~~~~~vP~L~~-~~~~~ 58 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNIP---VEQIILQNDDEATPIRMIGAKQVPILEK-DDGSF 58 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCCC---eEEEECCCCchHHHHHhcCCCccCEEEe-CCCeE
Confidence 35568899999887666554322 2222333221 012223457898743 33543
No 245
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=45.99 E-value=26 Score=20.63 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=14.4
Q ss_pred CcHHHHHHHHHHHHHHHH
Q 025454 74 DDDRFLEEYRKKRLAEMR 91 (252)
Q Consensus 74 ~Dd~~l~~yR~kRl~el~ 91 (252)
++|..-+..|++|+++..
T Consensus 8 eed~ea~r~reeRla~y~ 25 (28)
T PF10587_consen 8 EEDEEAERIREERLAAYA 25 (28)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 456788999999998764
No 246
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=45.80 E-value=32 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=27.4
Q ss_pred CCceEEEEEEcCCC-chhhhHHHHHHHHHHHC----CCceEEEEec
Q 025454 119 PDVWVVVILYKDGF-AECGLLMQCLEELARKY----PATKFVKIIS 159 (252)
Q Consensus 119 ~~~~VVV~fya~wc-~~Ck~l~~~l~~LA~ky----~~vkFvkI~~ 159 (252)
+|+++||.|.=..| ..|-.+...|.++.++. ..+.|+-|..
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISv 96 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISV 96 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEe
Confidence 45799998877777 57888777777765543 3466666644
No 247
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=43.43 E-value=7.8 Score=27.35 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=28.7
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC-----CCCCCCCCcccEEEEEECC
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD-----CIPNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~-----~~~~~~i~~lPTlliy~~G 180 (252)
..++.++|+.|+...-.|..+.-.| .++.+.... ....-+-..+|+|+.-.+|
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~gi~y---~~~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~ 60 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTELELDV---ILYPCPKGSPKRDKFLEKGGKVQVPYLVDPNTG 60 (77)
T ss_pred eEecCCCCchHHHHHHHHHHcCCcE---EEEECCCChHHHHHHHHhCCCCcccEEEeCCCC
Confidence 3455689999999877766553222 223332211 1122255789998542234
No 248
>PRK12559 transcriptional regulator Spx; Provisional
Probab=39.37 E-value=30 Score=27.52 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=16.6
Q ss_pred EEEEEcCCCchhhhHHHHHHH
Q 025454 124 VVILYKDGFAECGLLMQCLEE 144 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~ 144 (252)
|..|+.++|+.|+.....|..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE 22 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH
Confidence 456788999999997766655
No 249
>KOG4003 consensus Pyrazinamidase/nicotinamidase PNC1 [Defense mechanisms]
Probab=39.18 E-value=15 Score=31.44 Aligned_cols=19 Identities=21% Similarity=0.192 Sum_probs=16.4
Q ss_pred cCCCCC-CchhhHHHHHcCC
Q 025454 9 KDVEGA-STQWDDIQRKLGN 27 (252)
Q Consensus 9 ~~~~~~-~Tew~di~r~~g~ 27 (252)
.|.-|. +|+.|++|||+||
T Consensus 133 ~D~~GR~kt~L~~~L~k~~I 152 (223)
T KOG4003|consen 133 HDIWGRHKTDLNKYLEKHHI 152 (223)
T ss_pred hhhcccchhhHHHHHHHcCC
Confidence 456677 9999999999999
No 250
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=38.83 E-value=32 Score=26.43 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=21.2
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
|..|+.++|+.|+.....|+.. ++.|..++.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi 32 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNL 32 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEec
Confidence 3456789999999988777663 344444544
No 251
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=38.42 E-value=79 Score=29.40 Aligned_cols=95 Identities=16% Similarity=0.197 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhhhcCCCceE-EcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc
Q 025454 82 YRKKRLAEMREATKISRFGSVM-PISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST 160 (252)
Q Consensus 82 yR~kRl~el~~~~~~~~fG~v~-eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~ 160 (252)
||.-|-++---..+.+.-|.++ .|+..+..-+-.++ ...+..|+|.....| +....+...+.++.-+.|.....+
T Consensus 115 YRG~R~Kd~iieFAhR~a~aiI~pi~enQ~~fehlq~-Rhq~ffVf~Gtge~P---L~d~fidAASe~~~~a~FfSasee 190 (468)
T KOG4277|consen 115 YRGGREKDAIIEFAHRCAAAIIEPINENQIEFEHLQA-RHQPFFVFFGTGEGP---LFDAFIDAASEKFSVARFFSASEE 190 (468)
T ss_pred cCCCccHHHHHHHHHhcccceeeecChhHHHHHHHhh-ccCceEEEEeCCCCc---HHHHHHHHhhhheeeeeeeccccc
Confidence 4444433332223333344444 45543333333333 224677777543322 344444555566666777766555
Q ss_pred CCCCCCCCCcccEEEEEECC
Q 025454 161 DCIPNYPDRNLPTVLVYNNG 180 (252)
Q Consensus 161 ~~~~~~~i~~lPTlliy~~G 180 (252)
-.++.-..+-.|.+++|++-
T Consensus 191 VaPe~~~~kempaV~VFKDe 210 (468)
T KOG4277|consen 191 VAPEENDAKEMPAVAVFKDE 210 (468)
T ss_pred cCCcccchhhccceEEEccc
Confidence 55666667789999999986
No 252
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=38.34 E-value=46 Score=22.37 Aligned_cols=53 Identities=15% Similarity=0.154 Sum_probs=30.9
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC---C----CCCCCCCcccEEEEEECCeEE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD---C----IPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~---~----~~~~~i~~lPTlliy~~G~~v 183 (252)
.|+.+.|+.|..+.-.|....-. ..+..++... . ....+-..+|+|.. +|..+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~--~~~~i 62 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGIP---YEWVEVDILKGETRTPEFLALNPNGEVPVLEL--DGRVL 62 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCCC---cEEEEecCCCcccCCHHHHHhCCCCCCCEEEE--CCEEE
Confidence 46678999999887666554322 3344444211 1 12345568999974 46543
No 253
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=38.30 E-value=2e+02 Score=22.68 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=62.6
Q ss_pred EcChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHC---CCceEEEEeccCCC-------CCCCCCc-cc
Q 025454 104 PISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKY---PATKFVKIISTDCI-------PNYPDRN-LP 172 (252)
Q Consensus 104 eIs~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky---~~vkFvkI~~~~~~-------~~~~i~~-lP 172 (252)
.++.+++.+.-...- +...+|-|-.+.-+.-..+-+.+.++|+.+ |++.|+-|+.++.+ +.|+|.- =|
T Consensus 5 kl~~~~m~e~wedd~-~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~P 83 (120)
T cd03074 5 KLKPENMFETWEDDL-DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRP 83 (120)
T ss_pred hccHHHHHHhhhccc-CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCC
Confidence 344555555544332 246788999999999999999999999987 55999999988753 4455431 25
Q ss_pred EEEEEECCeEEEEeecccccCCCCCHHHHHHHHHh
Q 025454 173 TVLVYNNGAVKANYVGLRSFGRRCTPEGVALVLCQ 207 (252)
Q Consensus 173 Tlliy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~~ 207 (252)
.+-+..=...-....-+..--...+.+.|+.|+..
T Consensus 84 qIGVV~vtdadSvW~~m~~~~d~~t~~~Le~Wied 118 (120)
T cd03074 84 QIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIED 118 (120)
T ss_pred ceeeEecccccceeEecccccccCcHHHHHHHHHh
Confidence 44433211111111111000123678889988865
No 254
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=38.08 E-value=42 Score=26.98 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=16.0
Q ss_pred CCCCCCCcccEEEEEECCeEEE
Q 025454 163 IPNYPDRNLPTVLVYNNGAVKA 184 (252)
Q Consensus 163 ~~~~~i~~lPTlliy~~G~~v~ 184 (252)
...++|.++|||+| ||+.+-
T Consensus 136 ~~~~gi~gTPt~iI--nG~~~~ 155 (178)
T cd03019 136 AKKYKITGVPAFVV--NGKYVV 155 (178)
T ss_pred HHHcCCCCCCeEEE--CCEEEE
Confidence 46789999999998 887543
No 255
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=37.20 E-value=17 Score=25.04 Aligned_cols=29 Identities=31% Similarity=0.684 Sum_probs=18.6
Q ss_pred HHHHcCCCCCCCCCCCCCCCCCCCCCCCCCCccccccccCHHHHhhccC
Q 025454 21 IQRKLGNLPPKPPAFKPSAFEPAVDPDSVPKDKSWVDEKTEEELEELED 69 (252)
Q Consensus 21 i~r~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~led 69 (252)
+.||+|.+||-- ...++..+.+.|+.|-+
T Consensus 16 L~rrFG~lp~~~--------------------~~~I~~l~~eqLE~l~e 44 (59)
T PF14261_consen 16 LTRRFGELPPEI--------------------QERIQQLSLEQLEALAE 44 (59)
T ss_pred HHHHcCCCCHHH--------------------HHHHHcCCHHHHHHHHH
Confidence 468899987721 23455667777777654
No 256
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=36.75 E-value=58 Score=26.12 Aligned_cols=20 Identities=15% Similarity=0.381 Sum_probs=17.4
Q ss_pred CCCCCCCCcccEEEEEECCe
Q 025454 162 CIPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 162 ~~~~~~i~~lPTlliy~~G~ 181 (252)
+-.+|+|..+|+|++.+++.
T Consensus 63 lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 63 WFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred HHhhcCceEcCEEEEECCCC
Confidence 34899999999999999874
No 257
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=36.34 E-value=44 Score=24.33 Aligned_cols=35 Identities=9% Similarity=0.280 Sum_probs=22.0
Q ss_pred cccEEEEEE-CCeEEEEeecccccCCCCCHHHHHHHHHhcC
Q 025454 170 NLPTVLVYN-NGAVKANYVGLRSFGRRCTPEGVALVLCQSD 209 (252)
Q Consensus 170 ~lPTlliy~-~G~~v~~~vG~~~~G~~~~~e~lE~~L~~~g 209 (252)
.-|+|++|. +|+.+.++ .+. .++.+.++.+|.+.|
T Consensus 41 ~~P~L~l~d~~g~~~E~i-~i~----~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERI-NIE----KWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEE-E-S----SSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEE-Ecc----cCCHHHHHHHHHHhC
Confidence 358999987 58877764 343 468899999999876
No 258
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=36.22 E-value=22 Score=27.89 Aligned_cols=76 Identities=17% Similarity=0.254 Sum_probs=40.7
Q ss_pred CchhhhHHHHHHHHHHHCCCceEEEEeccC----CCCCCC--CCcccEEEEEECCeEEEEeeccccc-CCCC--CHHHHH
Q 025454 132 FAECGLLMQCLEELARKYPATKFVKIISTD----CIPNYP--DRNLPTVLVYNNGAVKANYVGLRSF-GRRC--TPEGVA 202 (252)
Q Consensus 132 c~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~----~~~~~~--i~~lPTlliy~~G~~v~~~vG~~~~-G~~~--~~e~lE 202 (252)
|++|..|...|...-.--..+.+.+|+... .+...+ =+++|+|++=. |.....- .... |.+| +...|.
T Consensus 24 Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~-~~~~~~~--~~~~~~~rfi~d~~~I~ 100 (112)
T PF11287_consen 24 CPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD-GAPSPDD--AGSHGGRRFIDDPRRIL 100 (112)
T ss_pred CCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC-CCCCccc--ccccCCeEEeCCHHHHH
Confidence 999999988776533333347777886542 222222 25799887743 3321110 1222 2332 456677
Q ss_pred HHHH-hcCC
Q 025454 203 LVLC-QSDP 210 (252)
Q Consensus 203 ~~L~-~~g~ 210 (252)
.+|. ++|.
T Consensus 101 ~~La~r~g~ 109 (112)
T PF11287_consen 101 RYLAERHGF 109 (112)
T ss_pred HHHHHHcCC
Confidence 7775 4553
No 259
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=36.03 E-value=36 Score=23.52 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=28.0
Q ss_pred EEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC----CCCCCCCcccEEEEE
Q 025454 125 VILYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC----IPNYPDRNLPTVLVY 177 (252)
Q Consensus 125 V~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~----~~~~~i~~lPTlliy 177 (252)
..|+.+.|+.|+.+.-.|.... +.|-.++.+.. ...-+-..+|+|..=
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~~g-----i~y~~~~~~~~~~~~~~~~~~~~vP~l~~~ 54 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDYHG-----IPYEVVEVNPVSRKEIKWSSYKKVPILRVE 54 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHHCC-----CceEEEECCchhHHHHHHhCCCccCEEEEC
Confidence 4567789999999887666543 33333322210 112344679988753
No 260
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=35.21 E-value=31 Score=27.47 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 025454 76 DRFLEEYRKKRLAEMREAT 94 (252)
Q Consensus 76 d~~l~~yR~kRl~el~~~~ 94 (252)
|.+|+..|++||++|+...
T Consensus 2 D~eL~AiR~qRlaqlqa~~ 20 (129)
T KOG3431|consen 2 DPELQAIRAQRLAQLQANS 20 (129)
T ss_pred chHHHHHHHHHHHHhhhhc
Confidence 3589999999999998764
No 261
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=34.09 E-value=69 Score=23.07 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=35.9
Q ss_pred EEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc---CCCCCCCCCcccEEE
Q 025454 123 VVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST---DCIPNYPDRNLPTVL 175 (252)
Q Consensus 123 VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~---~~~~~~~i~~lPTll 175 (252)
++..|-+...+.++..-..+.++.+.+.. ..+=-||.. .+++.+.|-.+|||+
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLv 60 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLV 60 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhh
Confidence 34444444458888888888888887753 333344543 466899999999975
No 262
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=32.59 E-value=2.3e+02 Score=22.13 Aligned_cols=90 Identities=20% Similarity=0.230 Sum_probs=55.3
Q ss_pred hhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCCC-ceEEEEeccC-----CCCCCCCC----ccc-EEE
Q 025454 107 GSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYPA-TKFVKIISTD-----CIPNYPDR----NLP-TVL 175 (252)
Q Consensus 107 ~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~-vkFvkI~~~~-----~~~~~~i~----~lP-Tll 175 (252)
-.+|...+.... -|+|.|..+.-..-..|. .|..+|+...+ -..+.||+.+ +..++.+. --| +|.
T Consensus 9 ~KdfKKLLRTr~---NVLvLy~ks~k~a~~~Lk-~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRN---NVLVLYSKSAKSAEALLK-LLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcC---cEEEEEecchhhHHHHHH-HHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 467777775442 477777665544444443 77888887655 4566676643 45667666 455 566
Q ss_pred EEECCeEEEEeecccccCCCCCHHHHHHHHH
Q 025454 176 VYNNGAVKANYVGLRSFGRRCTPEGVALVLC 206 (252)
Q Consensus 176 iy~~G~~v~~~vG~~~~G~~~~~e~lE~~L~ 206 (252)
=|++|.--..+ ...++..++-.||.
T Consensus 85 HYKdG~fHkdY------dR~~t~kSmv~Flr 109 (112)
T cd03067 85 HYKDGDFHTEY------NRQLTFKSMVAFLR 109 (112)
T ss_pred cccCCCccccc------cchhhHHHHHHHhh
Confidence 79999754433 23456666666664
No 263
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=31.76 E-value=1.9e+02 Score=22.81 Aligned_cols=50 Identities=16% Similarity=0.047 Sum_probs=31.1
Q ss_pred hhhHHHHHHcCCCCceE-EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEE
Q 025454 107 GSDFVREVSQAPPDVWV-VVILYKDGFAECGLLMQCLEELARKYPATKFVKI 157 (252)
Q Consensus 107 ~~~f~~~V~~~~~~~~V-VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI 157 (252)
.+++.+.+...+++..| +|..+.+ -..-..++..+.++|++|+++.|+-.
T Consensus 66 ~~nl~~ii~~~~~~~~ivlv~~~~~-~~~~~~~n~~~~~~a~~~~~v~~id~ 116 (150)
T cd01840 66 KDQLDELLDALGPDRQVYLVNPHVP-RPWEPDVNAYLLDAAKKYKNVTIIDW 116 (150)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCC-cchHHHHHHHHHHHHHHCCCcEEecH
Confidence 46777777665543333 3333311 11235778889999999998888664
No 264
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.86 E-value=88 Score=27.62 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=35.9
Q ss_pred CchhhhHHHHHHHHHHHCCCceEEEEeccCCCCCCCCCcccEEEEEECCeEEEE
Q 025454 132 FAECGLLMQCLEELARKYPATKFVKIISTDCIPNYPDRNLPTVLVYNNGAVKAN 185 (252)
Q Consensus 132 c~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~~v~~ 185 (252)
-.+|..|...|+++|.++..+-.+.+.-=..+..|.. .++.+++|+.+.+
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD----~IVAlK~G~vv~~ 217 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSD----HIVALKNGKVVKQ 217 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhh----heeeecCCEEEec
Confidence 5789999999999999998865554432222333433 5788999999874
No 265
>PRK04239 hypothetical protein; Provisional
Probab=30.81 E-value=47 Score=26.00 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 025454 78 FLEEYRKKRLAEMREATK 95 (252)
Q Consensus 78 ~l~~yR~kRl~el~~~~~ 95 (252)
.|++.|++||+||++...
T Consensus 2 ELe~IR~~rl~eLq~q~~ 19 (110)
T PRK04239 2 ELEEIRRRKLEELQKQAQ 19 (110)
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 378999999999987653
No 266
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=30.08 E-value=51 Score=26.23 Aligned_cols=31 Identities=10% Similarity=0.098 Sum_probs=20.1
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
|..|+.++|+.|+.....|.. . ++.|-.++.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~---~--~i~~~~~d~ 32 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA---H--QLSYKEQNL 32 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH---c--CCCeEEEEC
Confidence 345678999999997755544 2 344555544
No 267
>PRK05463 hypothetical protein; Provisional
Probab=29.54 E-value=3.2e+02 Score=24.70 Aligned_cols=79 Identities=13% Similarity=0.178 Sum_probs=49.4
Q ss_pred hHHHHHHHHHHHCCC-ceEEEE-ecc-----CCCCCCCCCc-ccEEEEEECCeEEEEeeccccc----------CCCCCH
Q 025454 137 LLMQCLEELARKYPA-TKFVKI-IST-----DCIPNYPDRN-LPTVLVYNNGAVKANYVGLRSF----------GRRCTP 198 (252)
Q Consensus 137 ~l~~~l~~LA~ky~~-vkFvkI-~~~-----~~~~~~~i~~-lPTlliy~~G~~v~~~vG~~~~----------G~~~~~ 198 (252)
.+..-|..++++.|. .-++-+ ... .+.....|+. +|..-+|++|+++....-+.++ |=.||
T Consensus 42 ~~A~DF~~FC~rNpkpCPLL~v~~~G~~~~~~la~~~DIRTD~P~Y~vy~~G~l~~e~~di~~~w~dD~V~FliGCSFS- 120 (262)
T PRK05463 42 DWAYDFLLFCQRNPKPCPLLDVTEPGSPELPLLGPDADIRTDVPRYRVYRDGELVEEVTDITDLWRDDLVTFLIGCSFS- 120 (262)
T ss_pred HHHHHHHHHHhhCCCCCCceeecCCCCCcccccCCCcccccCCCceEEEECCEEeeecCchHHhCccCeEEEEeecCCc-
Confidence 345566667777665 444433 111 1234566654 8999999999999876555442 33444
Q ss_pred HHHHHHHHhcCCCCCCCCCC
Q 025454 199 EGVALVLCQSDPVLNDGQSG 218 (252)
Q Consensus 199 e~lE~~L~~~g~i~~~~~~~ 218 (252)
+|..|.+.|+-...++.+
T Consensus 121 --FE~AL~~aGip~Rhi~~g 138 (262)
T PRK05463 121 --FEHALLEAGIPVRHIEEG 138 (262)
T ss_pred --HHHHHHHCCCCcccccCC
Confidence 788999988766655543
No 268
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=28.95 E-value=44 Score=24.20 Aligned_cols=50 Identities=10% Similarity=0.097 Sum_probs=29.5
Q ss_pred EEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccC----CCCCCCCCcccEEEE
Q 025454 124 VVILYKDGFAECGLLMQCLEELARKYPATKFVKIISTD----CIPNYPDRNLPTVLV 176 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~----~~~~~~i~~lPTlli 176 (252)
+..++.+.|+.|+.+.-.|....- ...++.++... .....+...+|+|..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 344567889999987765554322 24445554322 223345678999874
No 269
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=28.84 E-value=73 Score=23.83 Aligned_cols=68 Identities=9% Similarity=-0.026 Sum_probs=46.7
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCC--ceEEEEecc---CCCCCCCCCcccEEEEEECCeEEEEeecc
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPA--TKFVKIIST---DCIPNYPDRNLPTVLVYNNGAVKANYVGL 189 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~--vkFvkI~~~---~~~~~~~i~~lPTlliy~~G~~v~~~vG~ 189 (252)
++++=.|.+...+.++..-..+.++.+.+.. ..+=-||.. ..++.+.|-.+|||+=- .=..+.+++|-
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~-~P~P~rriiGd 75 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKI-LPPPVRKIIGD 75 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhc-CCCCcceeecc
Confidence 4677777788888888888888888776643 222223433 45689999999996542 34567777773
No 270
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=28.63 E-value=47 Score=25.02 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=34.8
Q ss_pred EEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---CCCCCCCC--CcccEEEE-EECCe
Q 025454 127 LYKDGFAECGLLMQCLEELARKYPATKFVKIIST---DCIPNYPD--RNLPTVLV-YNNGA 181 (252)
Q Consensus 127 fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---~~~~~~~i--~~lPTlli-y~~G~ 181 (252)
||-.+|+.|......+..+ .....+.|+-+... .+...+++ ..+-+.+. ..+|+
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~ 61 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDGE 61 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCCC
Confidence 7899999999999888777 23455888887322 22233443 34554444 46776
No 271
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=28.40 E-value=58 Score=26.62 Aligned_cols=19 Identities=11% Similarity=0.258 Sum_probs=16.5
Q ss_pred CCCCCCCcccEEEEEECCe
Q 025454 163 IPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 163 ~~~~~i~~lPTlliy~~G~ 181 (252)
+..++|.++|||+|+.++.
T Consensus 162 a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 162 ARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHcCCCccCEEEEEeCCe
Confidence 4578999999999998876
No 272
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=28.32 E-value=3.2e+02 Score=22.13 Aligned_cols=96 Identities=14% Similarity=0.237 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhcCCCceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchh-hhHHHHHHHHHH--HCCCceEEEEec
Q 025454 84 KKRLAEMREATKISRFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAEC-GLLMQCLEELAR--KYPATKFVKIIS 159 (252)
Q Consensus 84 ~kRl~el~~~~~~~~fG~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~C-k~l~~~l~~LA~--ky~~vkFvkI~~ 159 (252)
+.-++.|++.....+ +.++ |.++....+.+. +|+..||- .+-|+=- ...+|....... +-| -.++.|=+
T Consensus 3 ~~lV~pmR~ELt~~G---f~eL~T~e~Vd~~~~~~-~GTtlVvV--NSVCGCAag~ARPa~~~al~~~kkP-D~lvTVFA 75 (136)
T PF06491_consen 3 EELVQPMREELTRAG---FEELTTAEEVDEALKNK-EGTTLVVV--NSVCGCAAGNARPAAAMALQNDKKP-DHLVTVFA 75 (136)
T ss_dssp HHHCHHHHHHHHTTT----EE--SHHHHHHHHHH---SEEEEEE--E-SSHHHHHTHHHHHHHHHHHSS---SEEEEEET
T ss_pred HHHHHHHHHHHHHcC---ccccCCHHHHHHHHhCC-CCcEEEEE--eccccccccccCHHHHHHHhCCCCC-CceEEecc
Confidence 333455666555543 4566 666666666634 34333322 3445422 223444433222 223 45555533
Q ss_pred c------C----CCCCCCCCcccEEEEEECCeEEEEee
Q 025454 160 T------D----CIPNYPDRNLPTVLVYNNGAVKANYV 187 (252)
Q Consensus 160 ~------~----~~~~~~i~~lPTlliy~~G~~v~~~v 187 (252)
. . -...|+- +=|++.+||+|++|.-+-
T Consensus 76 GqDkEAt~~aR~yf~~~pP-SSPS~ALfKdGelvh~ie 112 (136)
T PF06491_consen 76 GQDKEATAKAREYFEPYPP-SSPSIALFKDGELVHFIE 112 (136)
T ss_dssp TTSHHHHHHHHHTSTTS----SSEEEEEETTEEEEEE-
T ss_pred CCCHHHHHHHHHhcCCCCC-CCchheeeeCCEEEEEee
Confidence 2 1 1244543 569999999999997553
No 273
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=27.54 E-value=1.8e+02 Score=19.98 Aligned_cols=52 Identities=17% Similarity=0.204 Sum_probs=32.6
Q ss_pred EEcCCCchhhhHHHHHHHHHHHCCCceEEEEeccCC----CCCCCCCcccEEEEEECCeEE
Q 025454 127 LYKDGFAECGLLMQCLEELARKYPATKFVKIISTDC----IPNYPDRNLPTVLVYNNGAVK 183 (252)
Q Consensus 127 fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~~~----~~~~~i~~lPTlliy~~G~~v 183 (252)
++.++|+.|+.+.-.+....- ...++.++..+- ....+-..+|+|. .+|..+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l 57 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL 57 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCEEE
Confidence 567899999998765544332 245555554321 2334667899997 667754
No 274
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=27.25 E-value=30 Score=29.58 Aligned_cols=49 Identities=12% Similarity=0.043 Sum_probs=29.0
Q ss_pred hHHHHHHcCCCCceEEEEEE---cCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 109 DFVREVSQAPPDVWVVVILY---KDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 109 ~f~~~V~~~~~~~~VVV~fy---a~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
.+.+.+.+.+ .+|++|.. .+.+.........+..++.+||+++|+-...
T Consensus 121 ~~~~~~~~~~--~pv~~H~g~~~~~~~~~~~~~~~~~~~~~~~~P~l~ii~~H~ 172 (273)
T PF04909_consen 121 PIFEAAEELG--LPVLIHTGMTGFPDAPSDPADPEELEELLERFPDLRIILAHL 172 (273)
T ss_dssp HHHHHHHHHT---EEEEEESHTHHHHHHHHHHHHHHHTTHHHHSTTSEEEESGG
T ss_pred HHHHHHHhhc--cceeeeccccchhhhhHHHHHHHHHHHHHHHhcCCeEEEecC
Confidence 4556666554 67777732 1112222334455778899999999986643
No 275
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=27.15 E-value=1.1e+02 Score=26.61 Aligned_cols=39 Identities=15% Similarity=0.290 Sum_probs=28.7
Q ss_pred CCceEEEEEE-----cCCCchhhhHHHHH-HHHHHHC-CCceEEEE
Q 025454 119 PDVWVVVILY-----KDGFAECGLLMQCL-EELARKY-PATKFVKI 157 (252)
Q Consensus 119 ~~~~VVV~fy-----a~wc~~Ck~l~~~l-~~LA~ky-~~vkFvkI 157 (252)
+...+|-||. ...|+.|-.+...+ ..++.-. .++.|+-|
T Consensus 67 r~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~v 112 (211)
T PF05988_consen 67 RRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVV 112 (211)
T ss_pred CceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEE
Confidence 4468888886 67899999999988 5554433 34778776
No 276
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=26.96 E-value=5.3e+02 Score=24.16 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHH-hhhcCCCceEEc-ChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHHHHHHHHHHHCC-CceEEE
Q 025454 80 EEYRKKRLAEMREA-TKISRFGSVMPI-SGSDFVREVSQAPPDVWVVVILYKDGFAECGLLMQCLEELARKYP-ATKFVK 156 (252)
Q Consensus 80 ~~yR~kRl~el~~~-~~~~~fG~v~eI-s~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~-~vkFvk 156 (252)
.+||.+|-.+--.. -.+..--.+.++ +..++....... + ..||..|-....+.-..+. ++|.-+. ++.|+.
T Consensus 87 rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~-K-~~vIgyF~~kdspey~~~~----kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 87 REYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPS-K-RTVIGYFPSKDSPEYDNLR----KVASLLRDDCVFLV 160 (375)
T ss_pred hhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccc-c-ceEEEEeccCCCchHHHHH----HHHHHHhhccEEEe
Confidence 47888886554222 122212235555 345555544422 2 4678888767777765544 4455443 366654
Q ss_pred EeccCCCCCCCCCcccEEEEEECCeEEEEeeccccc-CCCCCHHHHHHHHHh-cCCCCCCCCC-----------------
Q 025454 157 IISTDCIPNYPDRNLPTVLVYNNGAVKANYVGLRSF-GRRCTPEGVALVLCQ-SDPVLNDGQS----------------- 217 (252)
Q Consensus 157 I~~~~~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~-G~~~~~e~lE~~L~~-~g~i~~~~~~----------------- 217 (252)
--.+.. ....-.+.| +++.+|.....-. .| |.-.+.+.|..|+.. +-++...++=
T Consensus 161 ~~gD~~-~~~~~~~~~--~~~f~pd~~~~~~---~f~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflILf 234 (375)
T KOG0912|consen 161 GFGDLL-KPHEPPGKN--ILVFDPDHSEPNH---EFLGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLILF 234 (375)
T ss_pred eccccc-cCCCCCCCc--eEEeCCCcCCcCc---ccccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEEEE
Confidence 433322 111112222 4444444333211 34 655667777777764 5555544442
Q ss_pred ---CCCcchHHHHHHHHHHHHHH
Q 025454 218 ---GSDPSRKTVLEGVRKRLIEK 237 (252)
Q Consensus 218 ---~~~~~~~~~~~~~~~~~~~~ 237 (252)
++.++.+....+++|.+.+-
T Consensus 235 ~~kdD~~s~k~F~~aI~ReL~~e 257 (375)
T KOG0912|consen 235 RKKDDKESEKIFKNAIARELDDE 257 (375)
T ss_pred ecCCcccHHHHHHHHHHHHhhhh
Confidence 33356666677776666543
No 277
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.84 E-value=2e+02 Score=22.12 Aligned_cols=38 Identities=18% Similarity=0.286 Sum_probs=23.5
Q ss_pred HHHHHHHHHCCCceEEEEecc-CCCCCCCCCcccEEEEEEC
Q 025454 140 QCLEELARKYPATKFVKIIST-DCIPNYPDRNLPTVLVYNN 179 (252)
Q Consensus 140 ~~l~~LA~ky~~vkFvkI~~~-~~~~~~~i~~lPTlliy~~ 179 (252)
..+.+|..+-+.. ..|..+ .+-.+|+|..+||+++-++
T Consensus 42 ~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 42 KAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 3344444444333 223333 3348999999999999888
No 278
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=24.68 E-value=4.4e+02 Score=23.31 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=40.1
Q ss_pred EEcCCCchhhhHHHHHHHHHHH--CCCceEEEEeccC-CCCCCCCCcccEEEEEECCeEEEEeecccccCCCCCHHHHHH
Q 025454 127 LYKDGFAECGLLMQCLEELARK--YPATKFVKIISTD-CIPNYPDRNLPTVLVYNNGAVKANYVGLRSFGRRCTPEGVAL 203 (252)
Q Consensus 127 fya~wc~~Ck~l~~~l~~LA~k--y~~vkFvkI~~~~-~~~~~~i~~lPTlliy~~G~~v~~~vG~~~~G~~~~~e~lE~ 203 (252)
|....|..|-.+-..| ..+ .+.|||+.....- ..-+-.|-++|.+ |.+|+++. ++-..+++++.
T Consensus 16 ~~HktC~ssy~Lf~~L---~nkgll~~Vkii~a~~p~f~~~~~~V~SvP~V--f~DGel~~--------~dpVdp~~ies 82 (265)
T COG5494 16 FTHKTCVSSYMLFEYL---ENKGLLGKVKIIDAELPPFLAFEKGVISVPSV--FIDGELVY--------ADPVDPEEIES 82 (265)
T ss_pred EEecchHHHHHHHHHH---HhcCCCCCceEEEcCCChHHHhhcceeecceE--EEcCeEEE--------cCCCCHHHHHH
Confidence 3345677777655444 433 4567775443321 1122246678874 67898874 23456788998
Q ss_pred HHHh
Q 025454 204 VLCQ 207 (252)
Q Consensus 204 ~L~~ 207 (252)
.|..
T Consensus 83 ~~~G 86 (265)
T COG5494 83 ILSG 86 (265)
T ss_pred HHcC
Confidence 8874
No 279
>TIGR02945 SUF_assoc FeS assembly SUF system protein. Members of this family belong to the broader Pfam family pfam01883, or Domain of Unknown Function DUF59. Many members of DUF59 are candidate ring hydroxylating complex subunits. However, members of the narrower family defined here all are found in genomes that carry the FeS assembly SUF system. For 70 % of these species, the member of this protein family is found as part of the SUF locus, usually immediately downstream of the sufS gene.
Probab=24.61 E-value=1.2e+02 Score=22.34 Aligned_cols=39 Identities=18% Similarity=0.135 Sum_probs=29.6
Q ss_pred ceEEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEec
Q 025454 121 VWVVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIS 159 (252)
Q Consensus 121 ~~VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~ 159 (252)
..+.+.+-.++|+....+...+.......++++=+.|..
T Consensus 39 v~i~l~l~~p~~~~~~~l~~~i~~al~~l~gv~~v~v~i 77 (99)
T TIGR02945 39 VDIQMTLTAPNCPVAGSMPGEVENAVRAVPGVGSVTVEL 77 (99)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 567777878999999988888887767777766555543
No 280
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=24.51 E-value=1.9e+02 Score=24.86 Aligned_cols=76 Identities=22% Similarity=0.246 Sum_probs=44.2
Q ss_pred EEEEEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---------CC------------CCCCCCCcccEEEEEECCe
Q 025454 123 VVVILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---------DC------------IPNYPDRNLPTVLVYNNGA 181 (252)
Q Consensus 123 VVV~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---------~~------------~~~~~i~~lPTlliy~~G~ 181 (252)
||=.|.+.+|..|=--+..|.+|+.+ ++|--+....+ .. ...++.+++=|=-++.||.
T Consensus 1 vVELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~ 79 (202)
T PF06764_consen 1 VVELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGR 79 (202)
T ss_dssp EEEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTT
T ss_pred CeeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCe
Confidence 34467788999999999999999999 46544444322 11 1356677776777778885
Q ss_pred EEEEeecccccCCCCCHHHHHHHHHhc
Q 025454 182 VKANYVGLRSFGRRCTPEGVALVLCQS 208 (252)
Q Consensus 182 ~v~~~vG~~~~G~~~~~e~lE~~L~~~ 208 (252)
.- .+|. ....|...|.+.
T Consensus 80 ~~--~~g~-------~~~~~~~ai~~~ 97 (202)
T PF06764_consen 80 EH--RVGS-------DRAAVEAAIQAA 97 (202)
T ss_dssp EE--EETT--------HHHHHHHHHHH
T ss_pred ee--eecc-------CHHHHHHHHHHh
Confidence 43 4443 356677777654
No 281
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=24.23 E-value=1.5e+02 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=20.1
Q ss_pred cCCCchhhhHHHHHHHHHHHCCCceEEEE
Q 025454 129 KDGFAECGLLMQCLEELARKYPATKFVKI 157 (252)
Q Consensus 129 a~wc~~Ck~l~~~l~~LA~ky~~vkFvkI 157 (252)
-+-|..|. +++.++..+||++++-.+
T Consensus 105 ~~pC~SC~---~vi~qF~~~~pni~~~v~ 130 (133)
T PF14424_consen 105 LPPCESCS---NVIEQFKKDFPNIKVNVV 130 (133)
T ss_pred CCcChhHH---HHHHHHHHHCCCcEEEEe
Confidence 35577776 488999999999887654
No 282
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=22.93 E-value=89 Score=24.16 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=15.6
Q ss_pred EEEEEcCCCchhhhHHHHHHH
Q 025454 124 VVILYKDGFAECGLLMQCLEE 144 (252)
Q Consensus 124 VV~fya~wc~~Ck~l~~~l~~ 144 (252)
|..|+.|.|+.|+.....|++
T Consensus 2 i~iy~~p~C~~crkA~~~L~~ 22 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEA 22 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 346778999999987765554
No 283
>PRK00964 tetrahydromethanopterin S-methyltransferase subunit A; Provisional
Probab=21.72 E-value=57 Score=28.68 Aligned_cols=81 Identities=15% Similarity=0.160 Sum_probs=55.0
Q ss_pred CCCchhhhHHHHHHHHHHH---CCCceEEEEeccCCCCCCCCCcccEEEEEECCe-EEEEeecccc---cCCCCCHHHHH
Q 025454 130 DGFAECGLLMQCLEELARK---YPATKFVKIISTDCIPNYPDRNLPTVLVYNNGA-VKANYVGLRS---FGRRCTPEGVA 202 (252)
Q Consensus 130 ~wc~~Ck~l~~~l~~LA~k---y~~vkFvkI~~~~~~~~~~i~~lPTlliy~~G~-~v~~~vG~~~---~G~~~~~e~lE 202 (252)
.=|++|+.-+==++++-.. .|+++|+-+-..+..-.+ .+---+-+|+||- .-++++|... |-.+++.+.++
T Consensus 47 Ai~G~~~TENlGIEKvI~NvisNpNIRflilcG~Ev~GH~--tGqsl~aL~~NGvd~~grIiGa~GaiPfleNi~~~aV~ 124 (225)
T PRK00964 47 AISGPCHTENLGIEKVIANVISNPNIRFLILCGSEVQGHI--TGQSLKALHENGVDDDGRIIGAKGAIPFLENVPDEAVE 124 (225)
T ss_pred eeecccccccccHHHHHHHHhcCCCceEEEEecCccCCcc--ccHHHHHHHHcCCCCCCCCccCCCCCchhhcCCHHHHH
Confidence 3478998887777777654 478999988666543222 2222345677776 5677777653 34688999999
Q ss_pred HHHHhcCCCC
Q 025454 203 LVLCQSDPVL 212 (252)
Q Consensus 203 ~~L~~~g~i~ 212 (252)
+|..|.-.|.
T Consensus 125 rFq~qVeivd 134 (225)
T PRK00964 125 RFQEQIEIVD 134 (225)
T ss_pred HHHhheEEEe
Confidence 9999985444
No 284
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=21.70 E-value=1.7e+02 Score=19.84 Aligned_cols=52 Identities=15% Similarity=0.171 Sum_probs=29.3
Q ss_pred EEEcCCCchhhhHHHHHHHHHHHCCCceEEEEecc---C----CCCCCCCCcccEEEEEECCeE
Q 025454 126 ILYKDGFAECGLLMQCLEELARKYPATKFVKIIST---D----CIPNYPDRNLPTVLVYNNGAV 182 (252)
Q Consensus 126 ~fya~wc~~Ck~l~~~l~~LA~ky~~vkFvkI~~~---~----~~~~~~i~~lPTlliy~~G~~ 182 (252)
.|+.+.|+.|+.+.-.+..+.-. ..+..++.. . ..+..+-..+|++. .+|..
T Consensus 4 Ly~~~~s~~s~~v~~~l~~~~i~---~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~--~~g~~ 62 (76)
T cd03053 4 LYGAAMSTCVRRVLLCLEEKGVD---YELVPVDLTKGEHKSPEHLARNPFGQIPALE--DGDLK 62 (76)
T ss_pred EEeCCCChhHHHHHHHHHHcCCC---cEEEEeCccccccCCHHHHhhCCCCCCCEEE--ECCEE
Confidence 34456699998877666554322 344444321 1 12345677899885 35643
No 285
>COG3581 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.66 E-value=1.8e+02 Score=27.99 Aligned_cols=63 Identities=8% Similarity=0.106 Sum_probs=40.0
Q ss_pred cChhhHHHHHHcCCCCceEEEEEEcCCCchhhhHH--HHHHHHHH--HCCCceEEEEeccCCCCCCC
Q 025454 105 ISGSDFVREVSQAPPDVWVVVILYKDGFAECGLLM--QCLEELAR--KYPATKFVKIISTDCIPNYP 167 (252)
Q Consensus 105 Is~~~f~~~V~~~~~~~~VVV~fya~wc~~Ck~l~--~~l~~LA~--ky~~vkFvkI~~~~~~~~~~ 167 (252)
++-.++.+.+.+...+.--+..|-...||+|+.=+ ..+..+.. -|++|+|+.++++....+.+
T Consensus 54 ltiG~lid~~~~g~~d~~n~~vlmt~TgGpCRfgnYi~~~rkaLk~aG~~~V~visLn~e~~~k~~G 120 (420)
T COG3581 54 LTIGQLIDAIESGEYDIENDAVLMTQTGGPCRFGNYIELLRKALKDAGFRDVPVISLNSENLEKEPG 120 (420)
T ss_pred hhHHHHHHHHHhCCccccccEEEEecCCCCcchhhHHHHHHHHHHHcCCCCCcEEEeeccccccCCC
Confidence 35557888887654433334445556999999855 33444333 36789999999776655444
No 286
>PF10297 Hap4_Hap_bind: Minimal binding motif of Hap4 for binding to Hap2/3/5 ; InterPro: IPR018287 This entry represents an essential domain of the transcription activator Hap4 that allows it to associate with Hap2, Hap3 and Hap5 to form the Hap complex [, ]. In Saccharomyces cerevisiae (Baker's yeast), the haem-activated protein complex Hap2/3/4/5 plays a major role in the transcription of genes involved in respiration []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.57 E-value=53 Score=17.06 Aligned_cols=11 Identities=45% Similarity=0.703 Sum_probs=7.9
Q ss_pred HcCCCCCCCCC
Q 025454 24 KLGNLPPKPPA 34 (252)
Q Consensus 24 ~~g~~p~~~~~ 34 (252)
|.-.|||+|++
T Consensus 3 k~WvlPprpkp 13 (17)
T PF10297_consen 3 KNWVLPPRPKP 13 (17)
T ss_pred cccccCCCCCC
Confidence 34579998865
Done!