BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025457
(252 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|F Chain F, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1HH4|D Chain D, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|E Chain E, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 204
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
Q +++E E DKDDESLR++KE LLG V + + P V + L + S P ++
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
L+ K S F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G+
Sbjct: 90 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P+AE Y P + P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 202
>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 219
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/172 (40%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
Q +++E E DKDDESLR++KE LLG V + V L+L T P ++ L+
Sbjct: 47 QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 106
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
K S F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++
Sbjct: 107 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 165
Query: 196 PQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
P+AE Y P + P G ARGSY+ KS+F DDD +L + I KEW
Sbjct: 166 PRAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 217
>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 204
Score = 117 bits (293), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/171 (39%), Positives = 93/171 (54%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSV 136
Q +++E E DKDDESLR++KE LLG V + V L+L T P +
Sbjct: 32 QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91
Query: 137 PENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
+ K F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P
Sbjct: 92 GDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGP 151
Query: 197 QAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+AE Y P + P G ARGSY+ KS+F DDD +L + I KEW
Sbjct: 152 RAEEYEFLTPMEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 202
>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
pdb|1FST|B Chain B, Crystal Structure Of Truncated Human Rhogdi Triple Mutant
Length = 182
Score = 117 bits (292), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 98/174 (56%), Gaps = 6/174 (3%)
Query: 77 QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
Q +++E E DKDDESLR++KE LLG V + + P V + L + S P ++
Sbjct: 10 QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
L+ K S F LKEG Y ++ SF+V IVSG+KY ++ G+ +D+T M+G+
Sbjct: 68 LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P+AE Y P + P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 180
>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex
Length = 180
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 95/174 (54%), Gaps = 4/174 (2%)
Query: 76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
PQ +LKE E DKDDESL ++K+ LLG D V + P V + L + S P I +
Sbjct: 7 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 64
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
+ + K LKEGS Y ++ F+V +IVSGLKY ++TG+KVD M+G+
Sbjct: 65 DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 124
Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P+ E Y P + P G ARG+Y KS F DDD + +L + I KEW
Sbjct: 125 YGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEW 178
>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple
Mutant
Length = 139
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D+T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + F I K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNFTIKKDW 137
>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant
pdb|2JHW|B Chain B, Crystal Structure Of Rhogdi E155a, E157a Mutant
Length = 138
Score = 97.8 bits (242), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant
pdb|2JHZ|B Chain B, Crystal Structure Of Rhogdi E155s, E157s Mutant
Length = 138
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y+ P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant
pdb|1FT3|B Chain B, Crystal Structure Of Truncated Rhogdi K141a Mutant
Length = 139
Score = 97.4 bits (241), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D+T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137
>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20
Structures
pdb|1GDF|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets
An N-Terminal Inhibitory Peptide To Gtpases, Nmr,
Minimized Average Structure
Length = 145
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 43 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSY+ KS+F DDD +L + I KEW
Sbjct: 103 MEEAPKGMLARGSYNIKSRFTDDDRTDHLSWEWNLTIKKEW 143
>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|B Chain B, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|C Chain C, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
pdb|2JHT|D Chain D, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant
Length = 138
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 62/101 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++TG+ +D+T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHX|B Chain B, Crystal Structure Of Rhogdi E155h, E157h Mutant
pdb|2JHY|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant
Length = 138
Score = 97.1 bits (240), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y + SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 137
>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|B Chain B, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|C Chain C, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
pdb|1QVY|D Chain D, Crystal Structure Of Rhogdi K(199,200)r Double Mutant
Length = 139
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 61/101 (60%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+AE Y P
Sbjct: 37 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I ++W
Sbjct: 97 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIRRDW 137
>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant
Length = 138
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
pdb|1KMT|B Chain B, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant
Length = 141
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+A Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 99 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139
>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHU|B Chain B, Crystal Structure Of Rhogdi E154a,E155a Mutant
pdb|2JHV|A Chain A, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|B Chain B, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|C Chain C, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|D Chain D, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|E Chain E, Crystal Structure Of Rhogdi E154a,e155a Mutant
pdb|2JHV|F Chain F, Crystal Structure Of Rhogdi E154a,e155a Mutant
Length = 138
Score = 95.1 bits (235), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+K+D T M+G++ P+A Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant
Length = 138
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 38 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 98 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 138
>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
pdb|2BXW|B Chain B, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant
Length = 141
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 60/101 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG+KY ++ G+ +D T M+G++ P+AE Y P
Sbjct: 39 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 99 VEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 139
>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|B Chain B, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
pdb|1RHO|C Chain C, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor
Length = 145
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 59/101 (58%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
F LKEG Y ++ SF+V IVSG KY ++ G+K+D T +G++ P+AE Y P
Sbjct: 44 FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEW 247
+ P G ARGSYS KS+F DDD +L + I K+W
Sbjct: 104 VEEAPKGXLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW 144
>pdb|11AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine
pdb|11AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine
pdb|12AS|A Chain A, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine And Amp
pdb|12AS|B Chain B, Asparagine Synthetase Mutant C51a, C315a Complexed With L-
Asparagine And Amp
Length = 330
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 91 ESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD 131
SL +WK Q LG DF S GE L +K L RPD
Sbjct: 71 HSLAKWKRQTLGQHDF-SAGEGLYTHMKAL--------RPD 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.128 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,766,366
Number of Sequences: 62578
Number of extensions: 325338
Number of successful extensions: 546
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 26
length of query: 252
length of database: 14,973,337
effective HSP length: 97
effective length of query: 155
effective length of database: 8,903,271
effective search space: 1380007005
effective search space used: 1380007005
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 50 (23.9 bits)