Query 025457
Match_columns 252
No_of_seqs 138 out of 280
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/025457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3205 Rho GDP-dissociation i 100.0 8.8E-84 1.9E-88 559.3 22.2 198 49-248 1-200 (200)
2 PF02115 Rho_GDI: RHO protein 100.0 1.9E-78 4.1E-83 531.9 16.6 190 55-246 10-200 (200)
3 PF02221 E1_DerP2_DerF2: ML do 96.0 0.42 9.1E-06 37.9 13.8 93 146-243 25-134 (134)
4 cd00917 PG-PI_TP The phosphati 91.7 2.2 4.8E-05 34.5 9.6 82 149-234 24-115 (122)
5 smart00737 ML Domain involved 88.5 4.9 0.00011 31.6 8.9 82 149-234 21-111 (118)
6 cd00258 GM2-AP GM2 activator p 85.5 13 0.00028 32.7 10.5 39 204-244 122-160 (162)
7 PF11797 DUF3324: Protein of u 82.5 16 0.00035 30.3 9.5 84 156-245 43-131 (140)
8 cd00912 ML The ML (MD-2-relate 71.7 44 0.00096 26.7 9.0 87 146-234 23-120 (127)
9 PF15432 Sec-ASP3: Accessory S 61.9 23 0.0005 29.8 5.6 76 149-244 50-125 (128)
10 PF04234 CopC: CopC domain; I 60.2 54 0.0012 25.3 7.2 29 215-244 69-97 (97)
11 KOG4680 Uncharacterized conser 59.7 1.2E+02 0.0026 26.5 10.8 80 158-244 59-145 (153)
12 cd00915 MD-1_MD-2 MD-1 and MD- 54.1 1.3E+02 0.0029 25.3 9.3 83 146-234 28-123 (130)
13 PF14524 Wzt_C: Wzt C-terminal 49.7 1.2E+02 0.0026 23.4 9.9 97 113-228 9-109 (142)
14 PF00379 Chitin_bind_4: Insect 44.8 46 0.00099 23.0 4.1 29 207-240 18-46 (52)
15 PF05351 GMP_PDE_delta: GMP-PD 39.7 57 0.0012 28.5 4.7 78 155-233 63-147 (157)
16 COG2372 CopC Uncharacterized p 39.1 93 0.002 26.4 5.7 76 159-245 51-126 (127)
17 TIGR03711 acc_sec_asp3 accesso 38.4 83 0.0018 26.9 5.4 53 149-209 61-113 (135)
18 PHA00407 phage lambda Rz1-like 37.6 13 0.00029 29.3 0.5 12 92-103 27-38 (84)
19 PF15043 CNRIP1: CB1 cannabino 31.9 2.2E+02 0.0047 25.2 7.0 50 115-164 5-55 (161)
20 PF02114 Phosducin: Phosducin; 31.1 49 0.0011 30.7 3.2 52 48-99 52-109 (265)
21 cd00916 Npc2_like Niemann-Pick 29.1 3.1E+02 0.0067 22.1 8.8 84 145-234 22-116 (123)
22 smart00700 JHBP Juvenile hormo 27.2 4.2E+02 0.0091 23.1 9.0 10 91-100 21-30 (225)
23 PF13752 DUF4165: Domain of un 25.3 1.1E+02 0.0024 25.9 4.0 30 215-244 91-120 (124)
24 PF04787 Pox_H7: Late protein 25.3 58 0.0013 28.3 2.4 25 216-240 29-54 (147)
25 PF06155 DUF971: Protein of un 24.6 17 0.00037 27.7 -0.9 37 202-239 50-87 (89)
26 PF02494 HYR: HYR domain; Int 23.6 2.2E+02 0.0047 20.8 5.0 26 209-234 48-73 (81)
27 COG2967 ApaG Uncharacterized p 23.3 1.2E+02 0.0025 25.9 3.7 31 199-234 79-110 (126)
28 PF10651 DUF2479: Domain of un 22.4 92 0.002 26.4 3.1 42 200-247 83-127 (170)
29 TIGR03593 yidC_nterm membrane 20.8 6.3E+02 0.014 23.7 8.6 11 90-100 96-106 (366)
30 PF11687 DUF3284: Domain of un 20.7 3E+02 0.0066 22.2 5.7 61 169-242 40-101 (120)
31 PF12119 DUF3581: Protein of u 20.4 2.9E+02 0.0062 25.6 5.9 28 110-137 144-173 (218)
No 1
>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]
Probab=100.00 E-value=8.8e-84 Score=559.34 Aligned_cols=198 Identities=57% Similarity=0.920 Sum_probs=191.8
Q ss_pred cccccccCCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 025457 49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128 (252)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~eg 128 (252)
++|+++.|+.+.++++|++.+.+|++||||||+||+++|+|||||||||++|||.++ .+++|++|+|+|.+|+|+|+|
T Consensus 1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~ 78 (200)
T KOG3205|consen 1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG 78 (200)
T ss_pred CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence 468889999999999888888999999999999999999999999999999999987 688999999999999999999
Q ss_pred CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCC
Q 025457 129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206 (252)
Q Consensus 129 r~~i~l~L~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp 206 (252)
||||+|+|++++.+ ++++|+||||+.|+|+|+|+|||||||||||+|+|||+||+|||+.+|||||+|++++|+|.+|
T Consensus 79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p 158 (200)
T KOG3205|consen 79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP 158 (200)
T ss_pred CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence 99999999998777 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeccCC
Q 025457 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL 248 (252)
Q Consensus 207 ~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~ 248 (252)
+|||||||||||+|+|+|+|+|||++|||+|+|+|+|+|+|.
T Consensus 159 ~eeAPsGmlaRG~Ys~~skF~DDDk~~hLe~~w~~~I~K~W~ 200 (200)
T KOG3205|consen 159 EEEAPSGMLARGSYSAKSKFTDDDKTCHLEWNWTFDIKKEWK 200 (200)
T ss_pred cccCCccceeecceeeeeEEecCCCceEEEEEEEEEEeeccC
Confidence 999999999999999999999999999999999999999995
No 2
>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them. The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....
Probab=100.00 E-value=1.9e-78 Score=531.87 Aligned_cols=190 Identities=47% Similarity=0.797 Sum_probs=152.1
Q ss_pred cCCCCCCCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEE
Q 025457 55 ENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134 (252)
Q Consensus 55 ~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr~~i~l 134 (252)
+.+.+.+++++++.+.+|++|++|||+||++||++|||||||||||||.++ .++++++|+|+|++|+|+|+|||||+|
T Consensus 10 ~~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~l 87 (200)
T PF02115_consen 10 QEEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVL 87 (200)
T ss_dssp TCCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEE
T ss_pred ccccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeee
Confidence 334455667777777899999999999999999999999999999999887 577899999999999999999999999
Q ss_pred eCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCce
Q 025457 135 SVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSG 213 (252)
Q Consensus 135 ~L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSG 213 (252)
+|+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+|++++.|||||+|++++|+|+||+|+||||
T Consensus 88 dl~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG 167 (200)
T PF02115_consen 88 DLTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSG 167 (200)
T ss_dssp ETTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BS
T ss_pred eccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCc
Confidence 9998743 489999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeeeeEEEEeCCCceEEEEEEeEEEecc
Q 025457 214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIGKE 246 (252)
Q Consensus 214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~Kd 246 (252)
|||||+|+|+|+|+|||+++||+|+|+|+|+|+
T Consensus 168 ~laRG~Y~aks~f~DdD~~~~l~~~w~feI~Kd 200 (200)
T PF02115_consen 168 MLARGSYTAKSKFVDDDKNVHLEWEWSFEIKKD 200 (200)
T ss_dssp TTT-EEEEEEEEEEETTSSECEEEEEEEEEESS
T ss_pred eeEeeeeeEEEEEEeCCCcEEEEEEEEEEEecC
Confidence 999999999999999999999999999999996
No 3
>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products. It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....
Probab=96.02 E-value=0.42 Score=37.86 Aligned_cols=93 Identities=22% Similarity=0.325 Sum_probs=63.7
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-eEeccc----c-ccccc---cC---CC-CC---CeeeeCC-CC
Q 025457 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG-LKVDST----K-MMLGT---FS---PQ-AE---PYTQELP-ED 208 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G-I~Vdk~----e-~MiGS---Y~---P~-~e---~Y~~~fp-~E 208 (252)
+-.++-|..++|.+.|.+.+...++++..-.++-.| ++|--. . ..-.. .. |- +. .|++.++ +.
T Consensus 25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~ 104 (134)
T PF02221_consen 25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK 104 (134)
T ss_dssp SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence 456889999999999999999999998877777777 876544 1 22221 11 22 11 2344443 34
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEE
Q 025457 209 TTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDI 243 (252)
Q Consensus 209 eAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI 243 (252)
..|. |+|+++.+++|+++...+=++-.++|
T Consensus 105 ~~p~-----~~~~i~~~l~d~~~~~i~C~~~~v~I 134 (134)
T PF02221_consen 105 IYPP-----GKYTIQWKLTDQDGEEIACFEFPVKI 134 (134)
T ss_dssp TSSS-----EEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred ceee-----EEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence 4444 59999999999998766655555554
No 4
>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure. These proteins belong to the ML domain family.
Probab=91.75 E-value=2.2 Score=34.46 Aligned_cols=82 Identities=17% Similarity=0.163 Sum_probs=55.4
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc-c---c---cccCCCC-CC--eeeeCCCCCCCceeeeee
Q 025457 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM-M---L---GTFSPQA-EP--YTQELPEDTTPSGFFARG 218 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~-M---i---GSY~P~~-e~--Y~~~fp~EeAPSGmLaRG 218 (252)
++.|...+|.+.|....++-+|++-.=.++-.||++-.... . + |--=|=. -. |.++ -+-| +++-.|
T Consensus 24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g 99 (122)
T cd00917 24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG 99 (122)
T ss_pred cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence 78899999999999999888887776678888988764433 1 1 2111221 12 3332 2334 455568
Q ss_pred eeeeeEEEEeCCCceE
Q 025457 219 SYSAKSKFVDDDNKCY 234 (252)
Q Consensus 219 ~Y~akSkFvDDDk~~h 234 (252)
+|.++.++.|+|+...
T Consensus 100 ~y~v~~~l~d~~~~~i 115 (122)
T cd00917 100 KYTVSARAYTKDDEEI 115 (122)
T ss_pred eEEEEEEEECCCCCEE
Confidence 9999999999777654
No 5
>smart00737 ML Domain involved in innate immunity and lipid metabolism. ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.
Probab=88.55 E-value=4.9 Score=31.58 Aligned_cols=82 Identities=23% Similarity=0.388 Sum_probs=50.1
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecc---eEeccccc----cccccCCCC--CCeeeeCCCCCCCceeeeeee
Q 025457 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG---LKVDSTKM----MLGTFSPQA--EPYTQELPEDTTPSGFFARGS 219 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~G---I~Vdk~e~----MiGSY~P~~--e~Y~~~fp~EeAPSGmLaRG~ 219 (252)
++-|...+|.+.|...+++-+ | ++.+..+.| |++-.... .+|..=|-. +.|.|.+.- ..|+ .+-+|+
T Consensus 21 ~~~g~~~~i~i~f~~~~~~~~-~-~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~ 96 (118)
T smart00737 21 PVRGKTLTISISFTLNEDISK-L-KVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK 96 (118)
T ss_pred CCCCCEEEEEEEEEEcccceE-E-EEEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence 378999999999999888755 5 455554444 55543222 124334432 233333221 1232 555789
Q ss_pred eeeeEEEEeCCCceE
Q 025457 220 YSAKSKFVDDDNKCY 234 (252)
Q Consensus 220 Y~akSkFvDDDk~~h 234 (252)
|+++..++|+|+...
T Consensus 97 ~~v~~~l~d~~~~~i 111 (118)
T smart00737 97 YTVKWELTDEDGEEL 111 (118)
T ss_pred EEEEEEEEcCCCCEE
Confidence 999999999887754
No 6
>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides. GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.
Probab=85.54 E-value=13 Score=32.72 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=27.7
Q ss_pred eCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457 204 ELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIG 244 (252)
Q Consensus 204 ~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 244 (252)
..|.=+-| .||.+|+|.++... +.+++..-=++-+|.++
T Consensus 122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~~l~C~~~~~sL~ 160 (162)
T cd00258 122 TLPNVDLP-SWLTNGNYRITGIL-MADGKELGCGKFTFSLE 160 (162)
T ss_pred ecccccCC-CccCCCcEEEEEEE-CCCCCEEEEEEEEEEEe
Confidence 45545567 49999999999966 77776655556666654
No 7
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=82.51 E-value=16 Score=30.34 Aligned_cols=84 Identities=17% Similarity=0.213 Sum_probs=57.4
Q ss_pred EEEEEEEEee---eeeecceeEEEEEecce--EeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025457 156 SLQFSFQVRN---NIVSGLKYTNTVWKTGL--KVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDD 230 (252)
Q Consensus 156 ~iki~FkVq~---eIVsGLkY~q~VkK~GI--~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDD 230 (252)
+-.|..+++| .+++.|+..-.|++.|= .+-+.+..-.+.||++. +.|..++..- -|.=|+|+++.+...++
T Consensus 43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~ 118 (140)
T PF11797_consen 43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK 118 (140)
T ss_pred eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence 4444455544 48899999999988883 55666666679999875 4445555321 56669999999999988
Q ss_pred CceEEEEEEeEEEec
Q 025457 231 NKCYLEINYTFDIGK 245 (252)
Q Consensus 231 k~~hL~~eWsfeI~K 245 (252)
+ .| .|+=.|.|+.
T Consensus 119 ~-~W-~f~k~F~It~ 131 (140)
T PF11797_consen 119 K-TW-TFTKDFTITA 131 (140)
T ss_pred c-EE-EEEEEEEECH
Confidence 7 22 4444677764
No 8
>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi. These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.
Probab=71.73 E-value=44 Score=26.71 Aligned_cols=87 Identities=20% Similarity=0.243 Sum_probs=57.8
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc---ccc----c--cccCCCC--CCeeeeCCCCCCCcee
Q 025457 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST---KMM----L--GTFSPQA--EPYTQELPEDTTPSGF 214 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~---e~M----i--GSY~P~~--e~Y~~~fp~EeAPSGm 214 (252)
+=.++-|..++|.+.|..+.++ ..|+-.=.++..||++-.. .-. + +..=|-. +.|+|..... -|+=+
T Consensus 23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~~-v~~~~ 100 (127)
T cd00912 23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTVN-VPEFT 100 (127)
T ss_pred CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEEe-cCccc
Confidence 5568899999999999887775 5556666777789886542 211 1 3444543 3555554322 33335
Q ss_pred eeeeeeeeeEEEEeCCCceE
Q 025457 215 FARGSYSAKSKFVDDDNKCY 234 (252)
Q Consensus 215 LaRG~Y~akSkFvDDDk~~h 234 (252)
+.++.|.++..-+|+|+...
T Consensus 101 ~P~~~~~v~~~l~~~~~~~v 120 (127)
T cd00912 101 IPTIEYQVVLEDVTDKGEVL 120 (127)
T ss_pred CCCeeEEEEEEEEcCCCCEE
Confidence 67789999999999887754
No 9
>PF15432 Sec-ASP3: Accessory Sec secretory system ASP3
Probab=61.94 E-value=23 Score=29.77 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=54.4
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEe
Q 025457 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVD 228 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvD 228 (252)
||.|.+|+|++.+.+.. .+--|++.+.- |+..+.|+..-=+...-+|+.|.+. |+-+..-+.
T Consensus 50 Lk~G~~Y~l~~~~~~~P---~~svylki~F~-----dr~~e~i~~~i~k~~~~~F~yP~~a----------ysY~I~Lin 111 (128)
T PF15432_consen 50 LKRGHTYQLKFNIDVVP---ENSVYLKIIFF-----DRQGEEIEEQIIKNDSFEFTYPEEA----------YSYTISLIN 111 (128)
T ss_pred ecCCCEEEEEEEEEEcc---CCeEEEEEEEE-----ccCCCEeeEEEEecCceEEeCCCCc----------eEEEEEEee
Confidence 89999999999999974 46667877766 8888888888777777788888764 344444455
Q ss_pred CCCceEEEEEEeEEEe
Q 025457 229 DDNKCYLEINYTFDIG 244 (252)
Q Consensus 229 DDk~~hL~~eWsfeI~ 244 (252)
- |..+|.|. .|.|.
T Consensus 112 a-G~~~l~F~-~i~I~ 125 (128)
T PF15432_consen 112 A-GCQSLTFH-SIEIS 125 (128)
T ss_pred C-CCCeeEEe-EEEEE
Confidence 4 44444554 55554
No 10
>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule. Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.
Probab=60.17 E-value=54 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.413 Sum_probs=23.9
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457 215 FARGSYSAKSKFVDDDNKCYLEINYTFDIG 244 (252)
Q Consensus 215 LaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 244 (252)
|+-|.|++.-+.+-.||+.- +=.|+|.|+
T Consensus 69 l~~G~YtV~wrvvs~DGH~~-~G~~~F~V~ 97 (97)
T PF04234_consen 69 LPPGTYTVSWRVVSADGHPV-SGSFSFTVK 97 (97)
T ss_dssp --SEEEEEEEEEEETTSCEE-EEEEEEEE-
T ss_pred CCCceEEEEEEEEecCCCCc-CCEEEEEEC
Confidence 77799999999999999987 888898874
No 11
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=59.71 E-value=1.2e+02 Score=26.49 Aligned_cols=80 Identities=31% Similarity=0.370 Sum_probs=53.4
Q ss_pred EEEEEEeeeeeecceeEEEEEecceEeccccccccccC--CC-CC----CeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025457 158 QFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS--PQ-AE----PYTQELPEDTTPSGFFARGSYSAKSKFVDDD 230 (252)
Q Consensus 158 ki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~--P~-~e----~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDD 230 (252)
++.=.|-. -|++=+|+-.|+=.||+|-+...-|=.-. |- .- .++...|+.+.| |+|.++.+-+|.+
T Consensus 59 ~i~~ntg~-tIs~Gk~VIeV~y~gi~ihsethDLCdetsCPVepG~f~~~hsq~LPg~tPP------G~Y~lkm~~~d~~ 131 (153)
T KOG4680|consen 59 SISGNTGE-TISEGKYVIEVSYGGIRIHSETHDLCDETSCPVEPGDFLVAHSQVLPGYTPP------GSYVLKMTAYDAK 131 (153)
T ss_pred EEeccccc-EeeCCeEEEEEEEeeEEEeeccccccccccCCcCcCceeeeeeEeccCcCCC------ceEEEEEEeecCC
Confidence 33344443 36677888888888999876655543322 11 11 245667777666 7999999999999
Q ss_pred CceEEEEEEeEEEe
Q 025457 231 NKCYLEINYTFDIG 244 (252)
Q Consensus 231 k~~hL~~eWsfeI~ 244 (252)
|...-=+..+|.|.
T Consensus 132 ~~~LTCisfsf~i~ 145 (153)
T KOG4680|consen 132 GKELTCISFSFDIG 145 (153)
T ss_pred CCEEEEEEEEEEee
Confidence 88765566677765
No 12
>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors. MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.
Probab=54.13 E-value=1.3e+02 Score=25.33 Aligned_cols=83 Identities=13% Similarity=0.249 Sum_probs=58.4
Q ss_pred eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccc---c----ccCCCC--CCe--e--eeCCCCCCCc
Q 025457 146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML---G----TFSPQA--EPY--T--QELPEDTTPS 212 (252)
Q Consensus 146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~Mi---G----SY~P~~--e~Y--~--~~fp~EeAPS 212 (252)
+=.++-|..+.|.+.|.-..+ +.-|+-.=...=.||++=...+.+ | ++=|.. +.| . +.+|...=|.
T Consensus 28 pC~l~rg~n~~I~~~f~~~~d-~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~CP~~kGet~~Y~~p~slpi~~yP~ 106 (130)
T cd00915 28 PCSTLKGTNGFIRIKFILRRD-IKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFCGALKGETVYYVGPFSFKGILIPQ 106 (130)
T ss_pred cccceeCCcEEEEEEEEECcc-cceeEEEEEEEECCccCCCCCcccccCCCcccccCCccCCceEEEeeeecccccccCC
Confidence 445788999999999988654 778887777788895554333332 2 666754 444 4 4566555554
Q ss_pred eeeeeeeeeeeEEEEeCCCceE
Q 025457 213 GFFARGSYSAKSKFVDDDNKCY 234 (252)
Q Consensus 213 GmLaRG~Y~akSkFvDDDk~~h 234 (252)
|+|.++-..+|+++...
T Consensus 107 -----~~y~V~weL~d~~~~~l 123 (130)
T cd00915 107 -----GQYRCVAELIVENRETV 123 (130)
T ss_pred -----ccEEEEEEEECCCCCEE
Confidence 69999999999877654
No 13
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=49.73 E-value=1.2e+02 Score=23.43 Aligned_cols=97 Identities=20% Similarity=0.262 Sum_probs=52.5
Q ss_pred CCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEE-EecceEeccc-ccc
Q 025457 113 LEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV-WKTGLKVDST-KMM 190 (252)
Q Consensus 113 ~~p~V~I~~L~l~~egr~~i~l~L~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~V-kK~GI~Vdk~-e~M 190 (252)
.+.++.|.++.|.-.+..+ . .. +.-|..++++|+|++.+. +.++..-=.+ ...|+.|-.. ..+
T Consensus 9 g~~~~~I~~v~i~~~~g~~--~----------~~--~~~ge~~~i~i~~~~~~~-i~~~~~~~~i~~~~g~~v~~~~t~~ 73 (142)
T PF14524_consen 9 GNGEARITSVRILDSDGEP--T----------SS--FESGEPIRIRIDYEVNED-IDDPVFGFAIRDSDGQRVFGTNTYD 73 (142)
T ss_dssp --SSEEEEEEEEEETTEES-------------SS--EETTSEEEEEEEEEESS--EEEEEEEEEEEETT--EEEEEEHHH
T ss_pred CCCCEEEEEEEEEeCCCCE--e----------eE--EeCCCEEEEEEEEEECCC-CCccEEEEEEEcCCCCEEEEECccc
Confidence 3567889998887743221 0 11 667889999999999544 5555543333 4556665332 333
Q ss_pred ccccCCC--CCCeeeeCCCCCCCceeeeeeeeeeeEEEEe
Q 025457 191 LGTFSPQ--AEPYTQELPEDTTPSGFFARGSYSAKSKFVD 228 (252)
Q Consensus 191 iGSY~P~--~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvD 228 (252)
.+...+. ...|++.+ +-|.= |.-|.|.+..-+.+
T Consensus 74 ~~~~~~~~~~g~~~~~~---~i~~~-L~~G~Y~i~v~l~~ 109 (142)
T PF14524_consen 74 SGFPIPLSEGGTYEVTF---TIPKP-LNPGEYSISVGLGD 109 (142)
T ss_dssp HT--EEE-TT-EEEEEE---EEE---B-SEEEEEEEEEEE
T ss_pred cCccccccCCCEEEEEE---EEcCc-cCCCeEEEEEEEEe
Confidence 3422222 44455443 23444 88899999999943
No 14
>PF00379 Chitin_bind_4: Insect cuticle protein; InterPro: IPR000618 Insect cuticle is composed of proteins and chitin. The cuticular proteins seem to be specific to the type of cuticle (flexible or stiff) that occur at stages of the insect development. The proteins found in the flexible cuticle of larva and pupa of different insects share a conserved C-terminal section [] such a region is also found in the soft endocuticle of adults insects [] as well as in other cuticular proteins including in arachnids []. In addition, cuticular proteins share hydrophobic regions dominated by tetrapeptide repeats (A-A-P-A/V), which are presumed to be functionally important [, ]. Many insect cuticle proteins also include a 35-36 amino acid motif known as the R and R consensus. An extended form of this motif has been shown [] to bind chitin. It has no sequence similiarity to the cysteine-containing chitin-binding domain of chitinases and some peritrophic membrane proteins, suggesting that arthropods have two distinct classes of chitin-binding proteins, those with the chitin-binding domains found in lectins, chitinases and peritrophic membranes (cysCBD), and those with the type of chitin-binding domains found in cuticular proteins (non-cysCBD) []. The cuticle protein signature has been found in locust cuticle proteins 7 (LM-7), 8 (LM-8), 19 (LM-19) and endocuticle structural glycoprotein ABD-4; Hyalophora cecropia (Cecropia moth) cuticle proteins 12 and 66; Drosophila melanogaster (Fruit fly) larval cuticles proteins I, II, III and IV (LCP1 to LCP4); drosophila pupal cuticle proteins PCP, EDG-78E and EDG-84E; Manduca sexta (Tobacco hawkmoth) cuticle protein LCP-14; Tenebrio molitor (Yellow mealworm) cuticle proteins ACP-20, A1A, A2B and A3A; and Araneus diadematus (Spider) cuticle proteins ACP 11.9, ACP 12.4, ACP 12.6, ACP 15.5 and ACP 15.7.; GO: 0042302 structural constituent of cuticle
Probab=44.77 E-value=46 Score=22.99 Aligned_cols=29 Identities=34% Similarity=0.655 Sum_probs=22.1
Q ss_pred CCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEe
Q 025457 207 EDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYT 240 (252)
Q Consensus 207 ~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWs 240 (252)
.++...+--.||+|. |+|+|++.+ ++.|.
T Consensus 18 ~~~~~~~~~v~GsY~----y~~pdG~~~-~V~Y~ 46 (52)
T PF00379_consen 18 PETEDEGGVVRGSYS----YIDPDGQTR-TVTYV 46 (52)
T ss_pred cccCCCCCEEEEEEE----EECCCCCEE-EEEEE
Confidence 345556677889997 899999988 77774
No 15
>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3.1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.
Probab=39.69 E-value=57 Score=28.52 Aligned_cols=78 Identities=18% Similarity=0.309 Sum_probs=55.4
Q ss_pred EEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeee--eeeEEEE
Q 025457 155 YSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSY--SAKSKFV 227 (252)
Q Consensus 155 Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLaRG~Y--~akSkFv 227 (252)
-.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++.. ..|.+| .+.-|.-|+ .|.| ..-|.|.
T Consensus 63 V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et~sdSfyf 141 (157)
T PF05351_consen 63 VGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYETKSDSFYF 141 (157)
T ss_dssp EEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTEEEEEEEE
T ss_pred heEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcceEEEEEE
Confidence 3457899998899999999999999999999888888888898752 455665 334454444 3767 4667788
Q ss_pred eCCCce
Q 025457 228 DDDNKC 233 (252)
Q Consensus 228 DDDk~~ 233 (252)
+||+-+
T Consensus 142 v~~~Li 147 (157)
T PF05351_consen 142 VDDKLI 147 (157)
T ss_dssp ETTEEE
T ss_pred eCCEEE
Confidence 877644
No 16
>COG2372 CopC Uncharacterized protein, homolog of Cu resistance protein CopC [General function prediction only]
Probab=39.14 E-value=93 Score=26.43 Aligned_cols=76 Identities=14% Similarity=0.228 Sum_probs=52.4
Q ss_pred EEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEE
Q 025457 159 FSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEIN 238 (252)
Q Consensus 159 i~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~e 238 (252)
+.| +..|-.|+-+++.+.-.|-.|.....++..-.- ..++.. +.--|.+|.|.+-=+++-.||+.- +=.
T Consensus 51 L~F--se~ve~~fs~~~l~~~d~~~v~t~~~~~~~~~~--~~l~v~------l~~~L~aG~Y~v~WrvvS~DGH~v-~G~ 119 (127)
T COG2372 51 LEF--SEGVEPGFSGAKLTGPDGEEVATAGTKLDEQNH--TQLEVP------LPQPLKAGVYTVDWRVVSSDGHVV-KGS 119 (127)
T ss_pred Eec--CCccCCCcceeEEECCCCCccccCcccccccCC--cEEEec------CcccCCCCcEEEEEEEEecCCcEe-ccE
Confidence 455 234556778888888888777766655543210 113322 233588999999999999999987 888
Q ss_pred EeEEEec
Q 025457 239 YTFDIGK 245 (252)
Q Consensus 239 WsfeI~K 245 (252)
++|.|++
T Consensus 120 ~sFsV~~ 126 (127)
T COG2372 120 ISFSVGA 126 (127)
T ss_pred EEEEecC
Confidence 8998864
No 17
>TIGR03711 acc_sec_asp3 accessory Sec system protein Asp3. This protein is designated Asp3 because, along with SecY2, SecA2, and other proteins it is part of the accessory Sec system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=38.40 E-value=83 Score=26.89 Aligned_cols=53 Identities=21% Similarity=0.336 Sum_probs=39.8
Q ss_pred eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCC
Q 025457 149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDT 209 (252)
Q Consensus 149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~Ee 209 (252)
||.|.+|+|.+.+.+.. .|--|++.+.= |+..+-|++.-=+...-+|..|.+.
T Consensus 61 Lk~g~~Y~i~~n~~~~P---~~s~~~ki~F~-----dr~~~ei~~~i~~~~~~~F~yP~~a 113 (135)
T TIGR03711 61 LKRGQTYKLSLNADASP---EGSVYLKITFF-----DRQGEEIGTEIEKDDSIIFIYPDEA 113 (135)
T ss_pred EcCCCEEEEEEeeeeCC---CceEEEEEEEe-----ccCCceeceEEEecCceEEECCCcc
Confidence 99999999999998864 46667766643 6777777777777777777777654
No 18
>PHA00407 phage lambda Rz1-like protein
Probab=37.61 E-value=13 Score=29.27 Aligned_cols=12 Identities=58% Similarity=1.204 Sum_probs=10.2
Q ss_pred hHHHHHHHhcCC
Q 025457 92 SLRRWKEQLLGS 103 (252)
Q Consensus 92 SL~kwKesLLG~ 103 (252)
-|+|||++|+|.
T Consensus 27 tl~rwkaaLIGl 38 (84)
T PHA00407 27 TLRRWKAALIGL 38 (84)
T ss_pred hhHHHHHHHHHH
Confidence 589999999774
No 19
>PF15043 CNRIP1: CB1 cannabinoid receptor-interacting protein 1
Probab=31.93 E-value=2.2e+02 Score=25.21 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=32.1
Q ss_pred CcEEEEEEEEEcC-CCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEe
Q 025457 115 PEVKILSLAIKTP-SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVR 164 (252)
Q Consensus 115 p~V~I~~L~l~~e-gr~~i~l~L~~~~~~k~~~F~IKEGs~Y~iki~FkVq 164 (252)
|...-.+|.|..+ +..|+-+-+.+.-=-+...++|-=|++|+|.|.|+=-
T Consensus 5 ~~~f~vslslk~~pn~~PVffKvDG~RF~q~RTiKl~tdskYkv~V~~kP~ 55 (161)
T PF15043_consen 5 PGLFRVSLSLKIQPNDGPVFFKVDGQRFGQNRTIKLLTDSKYKVDVTIKPP 55 (161)
T ss_pred CceEEEEEEEEeCCCCCcEEEEecccccCCceEEEEecCCEEEEEEEEcCC
Confidence 4344445555544 3345777775331125678888899999999999864
No 20
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=31.11 E-value=49 Score=30.67 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=20.8
Q ss_pred CcccccccCCCCC---CCccccccccCccCCcccCHHHHHhcC---CcchhHHHHHHH
Q 025457 48 GMSRQMSENSISV---TEDEEDDEDRKIELGPQYTLKEQFEKD---KDDESLRRWKEQ 99 (252)
Q Consensus 48 ~~~~~~~~~~~~~---~~~~~~~~~~~yk~~~~ksl~E~~~lD---~eDESL~kwKes 99 (252)
.+.++++-++-.. +.+..+..+..=++..+.|++|+-.++ .||+-|++|+++
T Consensus 52 ~li~k~s~t~~s~l~e~~~~~~~k~~~e~~~~~~~~~e~e~~~~d~eDeefL~~yR~q 109 (265)
T PF02114_consen 52 RLIKKLSSTCRSHLDEEEEKQDQKDSEEKLSEKMSLDELEELEDDEEDEEFLEQYREQ 109 (265)
T ss_dssp S-S-SS-----------SSSS--GGGSS----SS-HHHHHHHCC----HHHHHHHHHH
T ss_pred HHHhhccccccccccccccccchhhhhhhhcccccHhHHhhhhcccccHHHHHHHHHH
Confidence 4566666644321 222122222233456678999887764 345789999987
No 21
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=29.07 E-value=3.1e+02 Score=22.14 Aligned_cols=84 Identities=27% Similarity=0.293 Sum_probs=55.4
Q ss_pred ceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc----cc--cccccCCCC--CC--eeeeCCCC-CCCce
Q 025457 145 SWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST----KM--MLGTFSPQA--EP--YTQELPED-TTPSG 213 (252)
Q Consensus 145 ~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~----e~--MiGSY~P~~--e~--Y~~~fp~E-eAPSG 213 (252)
.|=+|+-|...+|.|.|.-+.+ +..|+-.=...-.||++-=. .. -+|.-=|=. +. |.+.+|.. ..|
T Consensus 22 ~PC~l~rG~~~~~~i~F~~~~~-~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~~G~~~~y~~~~~v~~~~P-- 98 (123)
T cd00916 22 LPCKLKRGSTAKVSIDFTPNFD-STSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLSAGEDVTYTLSLPVLAPYP-- 98 (123)
T ss_pred CCCEEECCCEEEEEEEEEcCcc-cceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCcCCcEEEEEEeeeccccCC--
Confidence 5778999999999999976655 57777766667778775421 10 112333322 23 55656643 345
Q ss_pred eeeeeeeeeeEEEEeCCCceE
Q 025457 214 FFARGSYSAKSKFVDDDNKCY 234 (252)
Q Consensus 214 mLaRG~Y~akSkFvDDDk~~h 234 (252)
.++|.++-..+|+++...
T Consensus 99 ---~i~~~v~~~L~d~~~~~~ 116 (123)
T cd00916 99 ---GISVTVEWELTDDDGQVL 116 (123)
T ss_pred ---CeEEEEEEEEEcCCCCEE
Confidence 467999999999877754
No 22
>smart00700 JHBP Juvenile hormone binding protein domains in insects. The juvenile hormone exerts pleiotropic functions during insect life cycles and its binding proteins regulate these functions.
Probab=27.24 E-value=4.2e+02 Score=23.06 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=6.4
Q ss_pred hhHHHHHHHh
Q 025457 91 ESLRRWKEQL 100 (252)
Q Consensus 91 ESL~kwKesL 100 (252)
++++.+..+|
T Consensus 21 ~~~~~~~~~~ 30 (225)
T smart00700 21 DAIEALLPQL 30 (225)
T ss_pred HHHHHHHHHH
Confidence 4566677766
No 23
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=25.33 E-value=1.1e+02 Score=25.90 Aligned_cols=30 Identities=27% Similarity=0.579 Sum_probs=27.5
Q ss_pred eeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457 215 FARGSYSAKSKFVDDDNKCYLEINYTFDIG 244 (252)
Q Consensus 215 LaRG~Y~akSkFvDDDk~~hL~~eWsfeI~ 244 (252)
|.-|.|++++-..|-++.+--++.|.|-|-
T Consensus 91 l~dG~ytvk~eiL~s~g~vV~t~s~~~~ID 120 (124)
T PF13752_consen 91 LGDGTYTVKSEILDSQGTVVQTYSYPFTID 120 (124)
T ss_pred CCCCcEEEEEEeeccCCCEEEeeeEeEEEe
Confidence 477999999999999999999999999884
No 24
>PF04787 Pox_H7: Late protein H7; InterPro: IPR006872 This is a family of poxvirus late H7 proteins.
Probab=25.32 E-value=58 Score=28.33 Aligned_cols=25 Identities=20% Similarity=0.537 Sum_probs=22.4
Q ss_pred eeeeeeeeEEE-EeCCCceEEEEEEe
Q 025457 216 ARGSYSAKSKF-VDDDNKCYLEINYT 240 (252)
Q Consensus 216 aRG~Y~akSkF-vDDDk~~hL~~eWs 240 (252)
.||.++....| +|+||+..++|+|.
T Consensus 29 L~~~~P~~tifsid~~g~f~iDF~Yd 54 (147)
T PF04787_consen 29 LLNKHPNDTIFSIDEDGKFFIDFEYD 54 (147)
T ss_pred HhcCCCcceeeeEcCCCCEEEEeeeC
Confidence 47899999999 99999999999983
No 25
>PF06155 DUF971: Protein of unknown function (DUF971); InterPro: IPR010376 This domain is found in gamma-butyrobetaine dioxygenase and trimethyllysine dioxygenase proteins.; PDB: 2L6N_A 3LUU_A 2L6P_A 3MS5_A 3O2G_A 3N6W_A.
Probab=24.60 E-value=17 Score=27.70 Aligned_cols=37 Identities=22% Similarity=0.529 Sum_probs=27.6
Q ss_pred eeeCCCCCCCceeeeeeeeeeeEEEEeCCCc-eEEEEEE
Q 025457 202 TQELPEDTTPSGFFARGSYSAKSKFVDDDNK-CYLEINY 239 (252)
Q Consensus 202 ~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~-~hL~~eW 239 (252)
....|.+-.|..+-.-|.|.+...|-|+... +| +|+|
T Consensus 50 ~~~~~~~v~~~~i~~~G~y~l~i~WsDGH~sgiY-~~~~ 87 (89)
T PF06155_consen 50 TADIPPDVRPKSIEPVGNYALRITWSDGHDSGIY-PWEW 87 (89)
T ss_dssp --GCGTTTTEEEEEEETTTEEEEEETTSB---EE-EHHH
T ss_pred ccccCCCceEeEEEECCCCEEEEEECCCCceeEe-cHHH
Confidence 4567889999999888999999999877665 55 6655
No 26
>PF02494 HYR: HYR domain; InterPro: IPR003410 This domain is known as the HYR (Hyalin Repeat) domain, after the protein hyalin that is composed exclusively of this repeat. This domain probably corresponds to a new superfamily in the immunoglobulin fold. The function of this domain is uncertain it may be involved in cell adhesion. In the Sushi repeat-containing protein (SrpX), this domain is found between two sushi repeats.
Probab=23.59 E-value=2.2e+02 Score=20.82 Aligned_cols=26 Identities=15% Similarity=0.286 Sum_probs=22.4
Q ss_pred CCCceeeeeeeeeeeEEEEeCCCceE
Q 025457 209 TTPSGFFARGSYSAKSKFVDDDNKCY 234 (252)
Q Consensus 209 eAPSGmLaRG~Y~akSkFvDDDk~~h 234 (252)
..|+++|.-|.|.++-..+|.-|+.=
T Consensus 48 ~~~g~~f~~G~t~V~ytA~D~~GN~a 73 (81)
T PF02494_consen 48 HPPGDLFPVGTTTVTYTATDAAGNSA 73 (81)
T ss_pred CCCCceEeeceEEEEEEEEECCCCEE
Confidence 45677999999999999999988765
No 27
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=23.33 E-value=1.2e+02 Score=25.90 Aligned_cols=31 Identities=32% Similarity=0.576 Sum_probs=23.2
Q ss_pred CCeeeeCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 025457 199 EPYTQELP-EDTTPSGFFARGSYSAKSKFVDDDNKCY 234 (252)
Q Consensus 199 e~Y~~~fp-~EeAPSGmLaRG~Y~akSkFvDDDk~~h 234 (252)
+.|+|+.- +=.+|+|. .||+|.+ +|+||..+
T Consensus 79 ~~y~YtSg~~l~Tp~G~-M~GhY~M----~~e~G~~F 110 (126)
T COG2967 79 EEYQYTSGCPLDTPSGT-MQGHYEM----IDEDGETF 110 (126)
T ss_pred CceEEcCCcCccCCcce-EEEEEEE----ecCCCcEE
Confidence 45777765 56889996 4899985 67888776
No 28
>PF10651 DUF2479: Domain of unknown function (DUF2479); InterPro: IPR018913 This domain is found in phage from a number of different bacteria including (Listeria phage A118 (Bacteriophage A118)). It is thought to be a putative long tail fibre protein.; PDB: 4DIV_L 3UH8_A.
Probab=22.37 E-value=92 Score=26.44 Aligned_cols=42 Identities=21% Similarity=0.358 Sum_probs=25.6
Q ss_pred CeeeeCCCCCCCceeee-eeeeeeeEEEEe--CCCceEEEEEEeEEEeccC
Q 025457 200 PYTQELPEDTTPSGFFA-RGSYSAKSKFVD--DDNKCYLEINYTFDIGKEW 247 (252)
Q Consensus 200 ~Y~~~fp~EeAPSGmLa-RG~Y~akSkFvD--DDk~~hL~~eWsfeI~KdW 247 (252)
...|++|.+ +|+ -|.|.|...|.. ++..++ +-+.+|.|.++=
T Consensus 83 ~i~y~lp~~-----~l~~~G~v~a~~~i~~~~~~~~~~-t~~F~F~V~~s~ 127 (170)
T PF10651_consen 83 IIQYTLPDE-----FLKHVGKVKAQLFIYYNGDGQSIS-TANFTFEVEDSL 127 (170)
T ss_dssp EEEEE--TT-----TTHSSEEEEEEEEEEEESSSEEEE----EEEEEE--T
T ss_pred EEEEEECHH-----HhccCcEEEEEEEEEECCCCCEEE-EeeEEEEEeccc
Confidence 356666655 443 599999988888 555555 888999998864
No 29
>TIGR03593 yidC_nterm membrane protein insertase, YidC/Oxa1 family, N-terminal domain. Essentially all bacteria have a member of the YidC family, whose C-terminal domain is modeled by TIGR03592. The two copies are found in endospore-forming bacteria such as Bacillus subtilis appear redundant during vegetative growth, although the member designated spoIIIJ (stage III sporulation protein J) has a distinct role in spore formation. YidC, its mitochondrial homolog Oxa1, and its chloroplast homolog direct insertion into the bacterial/organellar inner (or only) membrane. This model describes an N-terminal sequence region, including a large periplasmic domain lacking in YidC members from Gram-positive species. The multifunctional YidC protein acts both with and independently of the Sec system.
Probab=20.81 E-value=6.3e+02 Score=23.68 Aligned_cols=11 Identities=36% Similarity=0.673 Sum_probs=5.7
Q ss_pred chhHHHHHHHh
Q 025457 90 DESLRRWKEQL 100 (252)
Q Consensus 90 DESL~kwKesL 100 (252)
+=.|.+||+.+
T Consensus 96 ~~~Lk~y~~~~ 106 (366)
T TIGR03593 96 SLELKKYKETL 106 (366)
T ss_pred eeccccCcccc
Confidence 33455555554
No 30
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=20.70 E-value=3e+02 Score=22.18 Aligned_cols=61 Identities=13% Similarity=0.327 Sum_probs=40.0
Q ss_pred ecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCc-eEEEEEEeEE
Q 025457 169 SGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNK-CYLEINYTFD 242 (252)
Q Consensus 169 sGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~-~hL~~eWsfe 242 (252)
.|++|.....+.+ ....-|-.|.| ...|.+.| .-+||++.++=.+.+-|.. |-+.++-.++
T Consensus 40 ~G~~Y~K~~~~~~----~~~v~It~~~~-~~~Y~~~~--------~s~~~~~~i~Y~i~~~~~~~~~v~y~E~~~ 101 (120)
T PF11687_consen 40 KGFSYQKKFKNKR----EAKVKITEYEP-NKRYAATF--------SSSRGTFTISYEIEPLDDGSIEVTYEEEYE 101 (120)
T ss_pred CCcEEEEEcCCCC----EEEEEEEEEcC-CCEEEEEE--------EecCCCEEEEEEEEECCCCcEEEEEEEEEc
Confidence 8888888887754 23333667776 34565554 3467888888888876665 6665555444
No 31
>PF12119 DUF3581: Protein of unknown function (DUF3581); InterPro: IPR021974 This family consists of uncharacterised bacterial proteins.
Probab=20.40 E-value=2.9e+02 Score=25.57 Aligned_cols=28 Identities=14% Similarity=0.049 Sum_probs=19.7
Q ss_pred CCCCCCcEEEEEEEEEcCC--CCCeEEeCC
Q 025457 110 GESLEPEVKILSLAIKTPS--RPDIVLSVP 137 (252)
Q Consensus 110 ~~~~~p~V~I~~L~l~~eg--r~~i~l~L~ 137 (252)
-.|..|-|+-.+|++...- .....+.|.
T Consensus 144 iNp~RPLViYESMs~~l~~Ld~~~~~l~l~ 173 (218)
T PF12119_consen 144 INPARPLVIYESMSFELDRLDFTSPELELA 173 (218)
T ss_pred ecCCCceEEeEeeEEEecccCCCCCeeEec
Confidence 3577888988999999883 334455554
Done!