Query         025457
Match_columns 252
No_of_seqs    138 out of 280
Neff          4.2 
Searched_HMMs 29240
Date          Mon Mar 25 10:44:32 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025457hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 1doa_B RHO GDI 1, protein (GDP 100.0 1.3E-80 4.3E-85  550.0  18.7  187   61-249    31-219 (219)
  2 1ds6_B RHO GDP-dissociation in 100.0 5.4E-80 1.9E-84  533.0  16.7  177   70-248     1-179 (180)
  3 1kmt_A RHO GDP-dissociation in 100.0 9.9E-63 3.4E-67  411.3  15.1  137  112-248     2-140 (141)
  4 2ag4_A GM2-AP, ganglioside GM2  90.0     3.2 0.00011   34.3  10.6   40  203-244   123-162 (164)
  5 2r5o_A Putative ATP binding co  81.8      20 0.00067   29.5  11.3  107  113-240    44-160 (188)
  6 1nep_A EPV20, BNPC2, epididyma  79.3      21 0.00071   28.0  10.4   95  144-244    25-129 (130)
  7 3t5g_B Retinal ROD rhodopsin-s  78.2       4 0.00014   34.3   5.9   85  154-240    60-149 (152)
  8 1xwv_A DER F II; beta sheets,   73.3      31  0.0011   27.0  10.4   95  144-245    24-129 (129)
  9 2oxg_Z SOXZ protein; immunoglo  65.6      43  0.0015   25.9   8.9   79  150-243    15-107 (108)
 10 4goj_C Protein UNC-119 homolog  48.0     8.3 0.00028   34.5   2.2  126  115-241    84-236 (240)
 11 1xvs_A Protein APAG; MCSG APC2  41.5      73  0.0025   25.4   6.6   57  172-234    42-110 (126)
 12 1lyq_A PCOC copper resistance   39.9      61  0.0021   24.6   5.7   30  214-244    75-104 (104)
 13 3nkg_A Uncharacterized protein  35.6      15 0.00052   31.3   1.8   60  130-199     5-68  (174)
 14 1v8h_A Sulfur oxidation protei  31.9 1.7E+02  0.0058   22.3   7.9   75  151-240    15-103 (107)
 15 2bn8_A CEDA, cell division act  21.0      66  0.0023   24.3   2.8   38  185-222    13-52  (87)
 16 2trc_P Phosducin, MEKA, PP33;   20.8      73  0.0025   26.6   3.4   27   74-100    55-84  (217)
 17 2c9r_A COPC, copper resistance  20.3   1E+02  0.0036   23.2   3.9   30  214-244    73-102 (102)
 18 1r17_A Fibrinogen-binding prot  20.1 3.4E+02   0.012   24.4   8.0  107  115-246    26-141 (343)

No 1  
>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*
Probab=100.00  E-value=1.3e-80  Score=550.05  Aligned_cols=187  Identities=38%  Similarity=0.647  Sum_probs=175.7

Q ss_pred             CCccccccccCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 025457           61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN  139 (252)
Q Consensus        61 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr~-~i~l~L~~~  139 (252)
                      .|+++++.+.+|++|++|||+||++|||+|||||||||||||.++  .+.++++|+|+|++|+|+|+||| +|+|+|+++
T Consensus        31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~  108 (219)
T 1doa_B           31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD  108 (219)
T ss_dssp             SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred             ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence            445556777889999999999999999999999999999999876  46788999999999999999995 599999876


Q ss_pred             CC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeee
Q 025457          140 GR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG  218 (252)
Q Consensus       140 ~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG  218 (252)
                      .. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus       109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG  188 (219)
T 1doa_B          109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG  188 (219)
T ss_dssp             CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred             hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence            44 39999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEEEeCCCceEEEEEEeEEEeccCCC
Q 025457          219 SYSAKSKFVDDDNKCYLEINYTFDIGKEWLQ  249 (252)
Q Consensus       219 ~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~~  249 (252)
                      +|+|+|+|+|||+++||+|+|+|+|+|+|.+
T Consensus       189 ~Y~akSkF~DDD~~~hL~~eWsfeI~KdW~~  219 (219)
T 1doa_B          189 SYNIKSRFTDDDRTDHLSWEWNLTIKKEWKD  219 (219)
T ss_dssp             EEEEEEEEECTTCCCCEEEEEEEEEESSTTC
T ss_pred             eeeeeEEEEeCCCceEEEEEEEEEEecCCCC
Confidence            9999999999999999999999999999953


No 2  
>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A
Probab=100.00  E-value=5.4e-80  Score=533.03  Aligned_cols=177  Identities=38%  Similarity=0.614  Sum_probs=169.8

Q ss_pred             cCccCCcccCHHHHHhcCCcchhHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 025457           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF  147 (252)
Q Consensus        70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~p~V~I~~L~l~~egr-~~i~l~L~~~~~-~k~~~F  147 (252)
                      ++|++|++|||+||++|||||||||||||||||.++  ++++|++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            369999999999999999999999999999999876  5778899999999999999999 889999988733 388999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025457          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFV  227 (252)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFv  227 (252)
                      +|||||.|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~  158 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCceEEEEEEeEEEeccCC
Q 025457          228 DDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       228 DDDk~~hL~~eWsfeI~KdW~  248 (252)
                      |||+++||+|+|+|+|+|+|.
T Consensus       159 DDD~~~hl~~~wsfeI~KdW~  179 (180)
T 1ds6_B          159 DDDKQDHLSWEWNLSIKKEWG  179 (180)
T ss_dssp             CTTCCCCEEEEEEEEEESSCC
T ss_pred             cCCCceEEEEEEEEEEeeCCC
Confidence            999999999999999999995


No 3  
>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A
Probab=100.00  E-value=9.9e-63  Score=411.27  Aligned_cols=137  Identities=36%  Similarity=0.680  Sum_probs=130.6

Q ss_pred             CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 025457          112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM  189 (252)
Q Consensus       112 ~~~p~V~I~~L~l~~egr~-~i~l~L~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~  189 (252)
                      |++|+|+|++|+|+++||| ||+++|+++.. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~   81 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   81 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence            4678999999999999976 69999987633 499999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEeccCC
Q 025457          190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIGKEWL  248 (252)
Q Consensus       190 MiGSY~P~~e~Y~~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~KdW~  248 (252)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+|+|||+++||+|+|+|+|+|+|.
T Consensus        82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~~hl~~~w~feI~KdW~  140 (141)
T 1kmt_A           82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDWK  140 (141)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCCCSEEEEEEEEEESCC-
T ss_pred             eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCcEEEEEEEeEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999995


No 4  
>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*
Probab=89.98  E-value=3.2  Score=34.25  Aligned_cols=40  Identities=20%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             eeCCCCCCCceeeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          203 QELPEDTTPSGFFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       203 ~~fp~EeAPSGmLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                      +.+|..+.|+ +|..|.|+++..+.|+ ++...=++-.|.|+
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~~-~~~l~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSSS-GKRLGCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEecC-CCEEEEEEEEEEEE
Confidence            6677778998 9999999999999884 44443555555553


No 5  
>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}
Probab=81.82  E-value=20  Score=29.45  Aligned_cols=107  Identities=11%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             CCCcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEe-cceEeccccccc
Q 025457          113 LEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK-TGLKVDSTKMML  191 (252)
Q Consensus       113 ~~p~V~I~~L~l~~egr~~i~l~L~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK-~GI~Vdk~e~Mi  191 (252)
                      .+..+.|.++.|.-.+..++  .            ++.-|..++|+|.|++..+ +..+.+-=.++. .|..|--...+.
T Consensus        44 Gsg~a~I~~v~l~d~~G~~~--~------------~~~~Ge~v~l~i~~~~~~~-i~~~v~G~~Ik~~~G~~I~g~nT~~  108 (188)
T 2r5o_A           44 GQGGAKIIDYHIQSAGVDFP--P------------SLTGNQQTDFLMKVVFEYD-FDCVVPGILIKTLDGLFLYGTNSFL  108 (188)
T ss_dssp             CCCSEEEEEEEEEETTEESC--S------------SEETTCEEEEEEEEEESSC-EEEEEEEEEEEETTCCEEEEEEHHH
T ss_pred             CCCcEEEEEEEEEECCCCEe--e------------EEeCCCEEEEEEEEEECCc-CCccEEEEEEECCCCCEEEecCccc
Confidence            34678899988875532221  1            1567888999999999754 345544334443 487775554333


Q ss_pred             cccCC-----CCCC-e--eeeCCCCCCCceeeeeeeeeeeEEEEeCC-CceEEEEEEe
Q 025457          192 GTFSP-----QAEP-Y--TQELPEDTTPSGFFARGSYSAKSKFVDDD-NKCYLEINYT  240 (252)
Q Consensus       192 GSY~P-----~~e~-Y--~~~fp~EeAPSGmLaRG~Y~akSkFvDDD-k~~hL~~eWs  240 (252)
                      -...+     ++.. +  .|.|+   .   .|.-|.|.+..-+.+.+ ...+..+.|.
T Consensus       109 ~~~~~~~~~~~~G~~~~v~f~f~---l---~L~~G~Y~lsv~i~~~~~~~~~~~~d~~  160 (188)
T 2r5o_A          109 ASEGRENISVSRGDVRVFKFSLP---V---DLNSGDYLLSFGISAGNPQTDMTPLDRR  160 (188)
T ss_dssp             HTTTCCCEEECTTCEEEEEEEEE---C---CBCSEEEEEEEEEEEEETTTEEEEEEEE
T ss_pred             ccccccccccCCCCEEEEEEEEe---c---ccCCCeEEEEEEEecCCcCCCcEEEEEE
Confidence            21222     2222 2  34444   2   48889999999998876 4455444554


No 6  
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=79.30  E-value=21  Score=27.96  Aligned_cols=95  Identities=19%  Similarity=0.258  Sum_probs=63.5

Q ss_pred             CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEec--ccc-cc--ccccCCCC--CC--eeeeCCC-CCCCce
Q 025457          144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVD--STK-MM--LGTFSPQA--EP--YTQELPE-DTTPSG  213 (252)
Q Consensus       144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vd--k~e-~M--iGSY~P~~--e~--Y~~~fp~-EeAPSG  213 (252)
                      ..|=.|+-|..++|.|.|.-+.+ +++|+-.=.++=.||++-  -.. --  -|..=|=.  +.  |.+.+|. ...|. 
T Consensus        25 ~~PC~l~rG~~~~i~i~f~~~~~-~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~P~-  102 (130)
T 1nep_A           25 TQPCKLHRGQSYSVNVTFTSNTQ-SQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPS-  102 (130)
T ss_dssp             SSSEEEETTCEEEEEEEEEESSC-BSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCS-
T ss_pred             CCCCEEEcCCeEEEEEEEEcccc-cceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccCCC-
Confidence            45778999999999999999887 577777666667888773  111 11  13333422  33  4555552 23554 


Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                          ++|.++-..+|+++....=|.-.++|+
T Consensus       103 ----~~~~v~~~L~d~~~~~l~C~~~~~~I~  129 (130)
T 1nep_A          103 ----IKVVVEWELTDDKNQRFFCWQIPIEVE  129 (130)
T ss_dssp             ----SEEEEEEEEECTTSCEEEEEEEEEEEE
T ss_pred             ----ccEEEEEEEEcCCCCEEEEEEEeEEEE
Confidence                679999999999998665566666664


No 7  
>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*
Probab=78.25  E-value=4  Score=34.29  Aligned_cols=85  Identities=16%  Similarity=0.211  Sum_probs=64.0

Q ss_pred             eEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCCCC--CCCceeeeeeeeeeeEEEEe
Q 025457          154 RYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELPED--TTPSGFFARGSYSAKSKFVD  228 (252)
Q Consensus       154 ~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp~E--eAPSGmLaRG~Y~akSkFvD  228 (252)
                      .-.-+|.|.| .++|.++|-+|.++=+|-.+..-..-.|=-.|++..   ..+.+|++  --|.. +.-|.-.+.++|+|
T Consensus        60 ~V~~~i~Fs~-~epi~nFRmierhyf~~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~-~lsGnv~IeT~f~d  137 (152)
T 3t5g_B           60 AVSRELNFSS-TEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPAS-VLTGNVIIETKFFD  137 (152)
T ss_dssp             EEEEEEEEEE-SSCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHH-HHTTTEEEEEEEEE
T ss_pred             hheEEEEEec-cccccccEEEEEEEEcCceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCHh-HcCCcEEEEEEEec
Confidence            3455888999 789999999999999999988888888888898753   35555533  23322 23599999999999


Q ss_pred             CCCceEEEEEEe
Q 025457          229 DDNKCYLEINYT  240 (252)
Q Consensus       229 DDk~~hL~~eWs  240 (252)
                      +|.-+.-+--+-
T Consensus       138 ~d~li~~s~vRi  149 (152)
T 3t5g_B          138 DDLLVSTSRVRL  149 (152)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCEEEEEeEEEE
Confidence            998776554433


No 8  
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=73.33  E-value=31  Score=26.96  Aligned_cols=95  Identities=17%  Similarity=0.219  Sum_probs=63.7

Q ss_pred             CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc--cccccccC--CCC--CCe--eeeCCC-CCCCcee
Q 025457          144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST--KMMLGTFS--PQA--EPY--TQELPE-DTTPSGF  214 (252)
Q Consensus       144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~--e~MiGSY~--P~~--e~Y--~~~fp~-EeAPSGm  214 (252)
                      ..|=.|+-|..++|.|.|.-+.+ ++.|+-.=.++=.|+.+-=.  ..-.=++.  |=.  +.|  .+.+|. ...|.  
T Consensus        24 ~~pC~l~rG~~~~i~~~f~~~~~-~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~v~~~~P~--  100 (129)
T 1xwv_A           24 SDPCIIHRGKPFTLEALFDANQN-TKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPK--  100 (129)
T ss_dssp             TSCEEEETTSEEEEEEEEECCSC-BSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEECCTTSCC--
T ss_pred             CCCCEEeCCCeEEEEEEEECCCc-cceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeEecccCCC--
Confidence            45788999999999999998877 78999888888889887311  00000111  221  234  444653 33554  


Q ss_pred             eeeee-eeeeEEEEeCCCceEEEE-EEeEEEec
Q 025457          215 FARGS-YSAKSKFVDDDNKCYLEI-NYTFDIGK  245 (252)
Q Consensus       215 LaRG~-Y~akSkFvDDDk~~hL~~-eWsfeI~K  245 (252)
                         ++ |.++-..+||++ ...=| .-.++|++
T Consensus       101 ---v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~  129 (129)
T 1xwv_A          101 ---SENVVVTVKLVGDNG-VLACAIATHAKIRD  129 (129)
T ss_dssp             ---BSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred             ---CceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence               67 999999999988 55555 66666653


No 9  
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z 2oxh_Z*
Probab=65.61  E-value=43  Score=25.88  Aligned_cols=79  Identities=20%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             ccCCeEEEEEEEEEeeeeeecce-----------eEEEEEecceEeccccccccccCCC--CCCe-eeeCCCCCCCceee
Q 025457          150 KEGSRYSLQFSFQVRNNIVSGLK-----------YTNTVWKTGLKVDSTKMMLGTFSPQ--AEPY-TQELPEDTTPSGFF  215 (252)
Q Consensus       150 KEGs~Y~iki~FkVq~eIVsGLk-----------Y~q~VkK~GI~Vdk~e~MiGSY~P~--~e~Y-~~~fp~EeAPSGmL  215 (252)
                      +-|...++++  .|.|---+||+           |+|.+.   +..+-...+=-..+|.  .+|| .|.|....+     
T Consensus        15 ~~g~~~~vk~--~I~HPMetGl~~d~~g~~IPa~~I~~v~---~~~ng~~v~~~~~~~~iS~NP~~~F~~~~~~~-----   84 (108)
T 2oxg_Z           15 KAGETVTVKA--LISHKMESGQRKDADGKLIPRSIINRFT---CELNGVNVVDVAIDPAVSTNPYFEFDAKVDAA-----   84 (108)
T ss_dssp             CTTEEEEEEE--EECCCCBCSCCBCTTSCBCCCBCEEEEE---EEETTEEEEEEEECTTBCSSCEEEEEEEECSS-----
T ss_pred             cCCCCEEEEE--EeECCCccccccCcCCCccchHheEEEE---EEECCEEEEEEEeCCccccCCeEEEEEecCCC-----
Confidence            4566665554  79998889966           777764   2223333333344454  3677 777665433     


Q ss_pred             eeeeeeeeEEEEeCCCceEEEEEEeEEE
Q 025457          216 ARGSYSAKSKFVDDDNKCYLEINYTFDI  243 (252)
Q Consensus       216 aRG~Y~akSkFvDDDk~~hL~~eWsfeI  243 (252)
                        |  ..+...+|++|..+ +-++.+.+
T Consensus        85 --g--~l~v~~~Dn~G~~~-~~~~~i~v  107 (108)
T 2oxg_Z           85 --G--EFKFTWYDDDGSVY-EDVKPIAV  107 (108)
T ss_dssp             --E--EEEEEEEETTSCEE-EEEEEEEE
T ss_pred             --c--EEEEEEEECCCCEE-EEEEEEEe
Confidence              4  56789999999988 55554443


No 10 
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=47.96  E-value=8.3  Score=34.51  Aligned_cols=126  Identities=13%  Similarity=0.270  Sum_probs=76.7

Q ss_pred             CcEEEEEEEEEcCCCCCeEEeCCCCCCCC-----CceEEeccC--CeEEEE------------EEEEEeeeeeecceeEE
Q 025457          115 PEVKILSLAIKTPSRPDIVLSVPENGRPK-----GSWFTLKEG--SRYSLQ------------FSFQVRNNIVSGLKYTN  175 (252)
Q Consensus       115 p~V~I~~L~l~~egr~~i~l~L~~~~~~k-----~~~F~IKEG--s~Y~ik------------i~FkVq~eIVsGLkY~q  175 (252)
                      -++.+.+|.|-=-.-..+-+.+..+....     ...+---.|  ++|++.            |.|.|-.++|.+||-+|
T Consensus        84 y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiE  163 (240)
T 4goj_C           84 YKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIE  163 (240)
T ss_dssp             TCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEE
T ss_pred             cCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeee
Confidence            36777888776544444445443221100     001111133  457765            99999888999999999


Q ss_pred             EEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeeeeee--EEEEeCCC-ceEEEEEEeE
Q 025457          176 TVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSYSAK--SKFVDDDN-KCYLEINYTF  241 (252)
Q Consensus       176 ~VkK~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLaRG~Y~ak--SkFvDDDk-~~hL~~eWsf  241 (252)
                      .++=+|..+..-..-.|=-.|++..   ..|.+|  .+..|.-|+. |.|-.+  |.|.+||+ ..|=.-+|+|
T Consensus       164 RhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~Et~sdSFYFvddkLvMHNKAdY~Y  236 (240)
T 4goj_C          164 RHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPYETQSDSFYFVDDRLVMHNKADYSY  236 (240)
T ss_dssp             EEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STTCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             hhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCCceeeeeeEEECCEEEEcchhhccc
Confidence            9999999999999999988899753   456666  3344555555 888444  44445444 3344455554


No 11 
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=41.48  E-value=73  Score=25.43  Aligned_cols=57  Identities=19%  Similarity=0.323  Sum_probs=36.3

Q ss_pred             eeEEEEEecceEecc--------ccccccccC---CCCCCeeeeCC-CCCCCceeeeeeeeeeeEEEEeCCCceE
Q 025457          172 KYTNTVWKTGLKVDS--------TKMMLGTFS---PQAEPYTQELP-EDTTPSGFFARGSYSAKSKFVDDDNKCY  234 (252)
Q Consensus       172 kY~q~VkK~GI~Vdk--------~e~MiGSY~---P~~e~Y~~~fp-~EeAPSGmLaRG~Y~akSkFvDDDk~~h  234 (252)
                      .=+|...|+=+--|.        -+-.+|.++   |.. .|+|..- .=.+|.| .++|+|..    +++||..+
T Consensus        42 ~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe-~f~YtSg~~L~tp~G-~M~G~y~m----~~~~G~~F  110 (126)
T 1xvs_A           42 QTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAND-EYTYSSGTALDTPVG-VMQGQYLM----IDEQGESF  110 (126)
T ss_dssp             SCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTC-EEEEEEEEEESSSEE-EEEEEEEE----ECTTSCEE
T ss_pred             CCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCC-ceEEeCCcCcCCCcE-EEEEEEEE----EECCCCEE
Confidence            445666666543342        244577776   544 6766654 3467999 67899996    57888754


No 12 
>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A
Probab=39.85  E-value=61  Score=24.64  Aligned_cols=30  Identities=27%  Similarity=0.403  Sum_probs=26.0

Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                      -|.-|.|++.=+.+-.|++.- +=.|+|.|+
T Consensus        75 ~L~~G~YtV~WrvvS~DGH~~-~G~~~FtV~  104 (104)
T 1lyq_A           75 PLPAGTYRVDWRAVSSDTHPI-TGNYTFTVK  104 (104)
T ss_dssp             CCCSEEEEEEEEECCTTSCCE-EEEEEEEEC
T ss_pred             CCCCceEEEEEEEEecCCCcc-CCEEEEEEC
Confidence            477899999999999999987 778888774


No 13 
>3nkg_A Uncharacterized protein GEBA250068378; GEBA target, BATA-fold, structural genomics, PSI-2, protein initiative; 2.00A {Sulfurospirillum deleyianum}
Probab=35.61  E-value=15  Score=31.32  Aligned_cols=60  Identities=22%  Similarity=0.367  Sum_probs=40.7

Q ss_pred             CCeEEe--CCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccc--cCCCCC
Q 025457          130 PDIVLS--VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT--FSPQAE  199 (252)
Q Consensus       130 ~~i~l~--L~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGS--Y~P~~e  199 (252)
                      .+|.+|  |++.++.-...|.|.|--.|.+.+.|.|+...=-|          |.--++--.++|+  |.|...
T Consensus         5 ~pi~~pidlsqagsv~e~e~~i~e~~~y~l~l~F~v~dr~~~~----------~~d~~r~~~flg~~~y~~~~~   68 (174)
T 3nkg_A            5 NPISIPIDLSQAGSVVEKEVKIEESWSYHLILQFAVHDRKEDG----------GLDGKRVWKFLGFNSYDPRDG   68 (174)
T ss_dssp             CCEEEEECTTSTTEEEEEEEEECSSEEEEEEEEECCCCTTTSS----------SHHHHHHHHHHCSCEECTTTC
T ss_pred             CceeeecChhhCcceeeeeeecccceeeeEEEEEEEccCcccc----------cccHHHHHHhhCCcccCcccc
Confidence            455555  55667767789999999999999999997642211          2323344557776  777654


No 14 
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation, unknown function, structural genomics; 1.20A {Thermus thermophilus HB8} SCOP: b.1.18.19
Probab=31.94  E-value=1.7e+02  Score=22.35  Aligned_cols=75  Identities=21%  Similarity=0.320  Sum_probs=45.4

Q ss_pred             cCCeEEEEEEEEEeeeeeecce-----------eEEEEEecceEeccccccccccCCC--CCCe-eeeCCCCCCCceeee
Q 025457          151 EGSRYSLQFSFQVRNNIVSGLK-----------YTNTVWKTGLKVDSTKMMLGTFSPQ--AEPY-TQELPEDTTPSGFFA  216 (252)
Q Consensus       151 EGs~Y~iki~FkVq~eIVsGLk-----------Y~q~VkK~GI~Vdk~e~MiGSY~P~--~e~Y-~~~fp~EeAPSGmLa  216 (252)
                      -|...+++  ..|.|---+||+           |+|.+.   +..+-...+=-+.+|.  .+|| .|.|....+      
T Consensus        15 ~g~~~~vk--~~I~HPmetGl~~D~~g~~iPa~~I~~v~---~~~ng~~v~~~~~~~~iS~nP~~~F~~~~~~~------   83 (107)
T 1v8h_A           15 AGEEFRLQ--VVAQHPNEPGTRRDAEGKLIPAKYINLVE---VYFEGEKVAEARPGPSTSANPLYAFKFKAEKA------   83 (107)
T ss_dssp             TTCEEEEE--EEECCCCBCSCCBCTTSCBCCCBCEEEEE---EEETTEEEEEECCCSSCCSSCEEEEEEECCSC------
T ss_pred             CCCcEEEE--EEeECCCCccccccccCCcCchHheEEEE---EEECCEEEEEEEeCCccccCCeEEEEEecCCC------
Confidence            34445544  479999899976           566553   2223333333344454  3677 777665433      


Q ss_pred             eeeeeeeEEEEeCCCceEEEEEEe
Q 025457          217 RGSYSAKSKFVDDDNKCYLEINYT  240 (252)
Q Consensus       217 RG~Y~akSkFvDDDk~~hL~~eWs  240 (252)
                       |.  .+...+|++|..+ +-++.
T Consensus        84 -g~--l~v~~~Dn~G~~~-~~~~~  103 (107)
T 1v8h_A           84 -GT--FTIKLKDTDGDTG-EASVK  103 (107)
T ss_dssp             -EE--EEEEEEETTSCEE-EEEEE
T ss_pred             -ce--EEEEEEECCCCEE-EEEEE
Confidence             44  6789999999988 44443


No 15 
>2bn8_A CEDA, cell division activator CEDA; cell division activator protein, cell cycle protein; NMR {Escherichia coli} PDB: 2d35_A
Probab=20.99  E-value=66  Score=24.25  Aligned_cols=38  Identities=21%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             ccccccccccCCCCCCe--eeeCCCCCCCceeeeeeeeee
Q 025457          185 DSTKMMLGTFSPQAEPY--TQELPEDTTPSGFFARGSYSA  222 (252)
Q Consensus       185 dk~e~MiGSY~P~~e~Y--~~~fp~EeAPSGmLaRG~Y~a  222 (252)
                      ......|-||-|+.||-  ++..-.+.---=++.||+|-|
T Consensus        13 rqqnrpvisyvprvepapp~ha~kmd~frdvw~lrgkyva   52 (87)
T 2bn8_A           13 RQQNRQIISYVPRTEPAPPEHAIKMDSFRDVWMLRGKYVA   52 (87)
T ss_dssp             --------CCCCCCCCBTTBSCBCTTTCTTEEEETTEEEE
T ss_pred             HhcCCcceeeccCCCCCCchHhhhcccchhheeeccceEE
Confidence            34445677999999863  334344444556899999986


No 16 
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction, regulation, phosphorylation, G proteins, thioredoxin, vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Probab=20.82  E-value=73  Score=26.55  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             CCcccCHHHHHhcC---CcchhHHHHHHHh
Q 025457           74 LGPQYTLKEQFEKD---KDDESLRRWKEQL  100 (252)
Q Consensus        74 ~~~~ksl~E~~~lD---~eDESL~kwKesL  100 (252)
                      ...++||+|+-.++   .+|+-|++|.++=
T Consensus        55 ~~~~~~~~e~~~~~~d~~d~~fl~~~r~~R   84 (217)
T 2trc_P           55 MSRKMSIQEYELIHQDKEDEGCLRKYRRQC   84 (217)
T ss_dssp             CCCSSCHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             hhccCChhhhhhhccccccHHHHHHHHHHH
Confidence            45689999888776   5678899997764


No 17 
>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A
Probab=20.31  E-value=1e+02  Score=23.16  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=26.0

Q ss_pred             eeeeeeeeeeEEEEeCCCceEEEEEEeEEEe
Q 025457          214 FFARGSYSAKSKFVDDDNKCYLEINYTFDIG  244 (252)
Q Consensus       214 mLaRG~Y~akSkFvDDDk~~hL~~eWsfeI~  244 (252)
                      -|.-|.|++.=+.+-.|++.- +=.|+|.|+
T Consensus        73 ~L~~G~YtV~WrvvS~DGH~~-~G~~~FtV~  102 (102)
T 2c9r_A           73 PLTAGTYKVDWRAVSSDTFPI-TGSVTFKVK  102 (102)
T ss_dssp             CCCSEEEEEEEEECCTTCCCE-EEEEEEEEC
T ss_pred             CCCCceEEEEEEEEecCCCcc-CCEEEEEEC
Confidence            577899999999999999987 778888764


No 18 
>1r17_A Fibrinogen-binding protein SDRG; SDRG, mscramm-ligand complex, SDRG-fibrinopeptide complex, cell adhesion; 1.86A {Staphylococcus epidermidis} SCOP: b.2.3.4 b.2.3.4 PDB: 1r19_A 2ral_A
Probab=20.06  E-value=3.4e+02  Score=24.42  Aligned_cols=107  Identities=19%  Similarity=0.254  Sum_probs=54.0

Q ss_pred             CcEEEEEEEEEcCCCCCeEEeCCCCCCCCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecccccccccc
Q 025457          115 PEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTF  194 (252)
Q Consensus       115 p~V~I~~L~l~~egr~~i~l~L~~~~~~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkK~GI~Vdk~e~MiGSY  194 (252)
                      ..|.|..+.|.+.....            ...+..-.|..++|.+.|.+.+.|-.|=.+.=.+         .+.+.   
T Consensus        26 dki~vt~~~i~~~~~~~------------~~~v~p~~~e~~~l~~~f~i~~~vk~GD~Fti~L---------p~~l~---   81 (343)
T 1r17_A           26 HLIKVTDQSITEGYDDS------------DGIIKAHDAENLIYDVTFEVDDKVKSGDTMTVNI---------DKNTV---   81 (343)
T ss_dssp             GGEEEEEEEEEESCSSS------------TTEEETTBTCCEEEEEEEEECTTCCTTCEEEEEC---------CTTEE---
T ss_pred             ccEEEeeeEEEeccCCC------------CccCccCCCCEEEEEEEEEcCCCCCCCCEEEEEC---------CCCee---
Confidence            36888888887643210            1133344677788888888875544443222111         11111   


Q ss_pred             CCCCCCeeeeCCCCCCCce-eeeeeee-----eeeEEEEeC---CCceEEEEEEeEEEecc
Q 025457          195 SPQAEPYTQELPEDTTPSG-FFARGSY-----SAKSKFVDD---DNKCYLEINYTFDIGKE  246 (252)
Q Consensus       195 ~P~~e~Y~~~fp~EeAPSG-mLaRG~Y-----~akSkFvDD---Dk~~hL~~eWsfeI~Kd  246 (252)
                       |..-...+..++-.+|.| .+|.|+|     +++.+|+|-   -..+..+|.....|-++
T Consensus        82 -~~~~~~~~~~~di~d~~G~vIA~a~vd~~~~~it~TFTdYVe~~~ni~Gs~~~~~~id~~  141 (343)
T 1r17_A           82 -PSDLTDSFAIPKIKDNSGEIIATGTYDNTNKQITYTFTDYVDKYENIKAHLKLTSYIDKS  141 (343)
T ss_dssp             -SCSSCSCCCCCCEEETTCCEEEEEEEETTTTEEEEEECGGGGTCEEEEEEEEECCEECTT
T ss_pred             -eccccccccccccCCCCCCEEEEEEEeCCCCEEEEEechhhcccCCeEEEEEEEEEECcc
Confidence             110001122222234566 8888988     456677653   44455555554444443


Done!