BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 025458
(252 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 37.0 bits (84), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 7 NHHQEHSHGHGHGHGHGRHPSSFNATTPNQSN-----------GNSITLAERWSAILKHN 55
N Q S H + G+ + S + + T + N + T+A+ +++
Sbjct: 227 NIDQSDSPQHCYCCGNKFNESYYQSQTAQKYNVCISCYQQNRFPSPTTIADYKEVAIQNK 286
Query: 56 PGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALR 104
WT +E +L +G++ Y+ D +AK+A H+N K+V + L+
Sbjct: 287 IEDDDTWTAQELVLLSEGVEMYSDD-----WAKVASHVNTKSVEECILK 330
>sp|Q69Z66|MYSM1_MOUSE Histone H2A deubiquitinase MYSM1 OS=Mus musculus GN=Mysm1 PE=2 SV=2
Length = 819
Score = 37.0 bits (84), Expect = 0.15, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 14/82 (17%)
Query: 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVAL--------RCRWMTK 110
S +WT+EE+ + E GL K+ R+ KIA L ++TV V + +W +
Sbjct: 115 SVKWTVEEKELFEQGLAKFGR-----RWTKIATLLKSRTVLQVKSYARQYFKNKVKWDVE 169
Query: 111 KEN-SKRRKEELSRKSKDKKER 131
KE +++ +L K+KD + +
Sbjct: 170 KETPTQKSSSDLQVKNKDDRTK 191
>sp|Q6KAQ7|ZZZ3_MOUSE ZZ-type zinc finger-containing protein 3 OS=Mus musculus GN=Zzz3
PE=2 SV=2
Length = 910
Score = 36.6 bits (83), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 62 WTLEEQAILEDGLQKYASDRTLT-RYAKIAVHLNNKTVRDVALR 104
WT+EEQ LE L KY + + R+ KIA L N+T + VA R
Sbjct: 662 WTVEEQKKLEQLLLKYPPEEVESRRWQKIADELGNRTAKQVASR 705
>sp|Q8IYH5|ZZZ3_HUMAN ZZ-type zinc finger-containing protein 3 OS=Homo sapiens GN=ZZZ3
PE=1 SV=1
Length = 903
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 62 WTLEEQAILEDGLQKYASDRTLT-RYAKIAVHLNNKTVRDVALR 104
WT+EEQ LE L KY + + R+ KIA L N+T + VA R
Sbjct: 655 WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASR 698
>sp|Q5VVJ2|MYSM1_HUMAN Histone H2A deubiquitinase MYSM1 OS=Homo sapiens GN=MYSM1 PE=1 SV=1
Length = 828
Score = 34.3 bits (77), Expect = 0.82, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 46 ERWSAILKHNP----GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDV 101
++ + I+ H+P S +WT+EE+ + E GL K+ R+ KI+ + ++TV V
Sbjct: 101 QKTAKIMVHSPTKPASYSVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQV 155
Query: 102 ALRCRW---------MTKKENSKRRKEELSRKSKDKKERVIDPS 136
R + K+ +++ L K++DK + PS
Sbjct: 156 KSYARQYFKNKVKCGLDKETPNQKTGHNLQVKNEDKGTKAWTPS 199
>sp|Q5F3F2|MYSM1_CHICK Histone H2A deubiquitinase MYSM1 OS=Gallus gallus GN=MYSM1 PE=2
SV=1
Length = 832
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Query: 56 PG-ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR--WMTKKE 112
PG S +WT EE+ + E GL KY R+ KIA + ++TV V R + K +
Sbjct: 115 PGSYSLKWTSEEKELFEQGLVKYGR-----RWTKIAKLIGSRTVLQVKSYARQYFKNKAK 169
Query: 113 NSKRRKEELSR 123
N +EE S+
Sbjct: 170 NDGSEREEQSQ 180
>sp|Q6P116|RCOR2_DANRE REST corepressor 2 OS=Danio rerio GN=rcor2 PE=2 SV=1
Length = 536
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 55 NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVA 102
N I+S WT EEQ + +++Y D +A IA + NKTV V+
Sbjct: 326 NQKINSRWTTEEQLLAVQAVRRYGKD-----FAAIADVIGNKTVAQVS 368
>sp|A2RM32|FABH_LACLM 3-oxoacyl-[acyl-carrier-protein] synthase 3 OS=Lactococcus lactis
subsp. cremoris (strain MG1363) GN=fabH PE=3 SV=1
Length = 325
Score = 32.3 bits (72), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 164 FSLKAIGGNIGDTLEKNARALNQISANL---AAFQIQDNISL-LCQTRDNILRILNEMNN 219
F+++ + NI TLEK+ A +I L A +I D ++ L TRD L+ + E N
Sbjct: 221 FAVRDVPKNIQATLEKSDLAAEEIDYYLLHQANSRILDKMAKKLGVTRDKFLQNMQEYGN 280
Query: 220 TSAIMRQMPPLPVHLNEELSNTIL 243
TSA +P+ L+E + N I
Sbjct: 281 TSA-----ASIPILLSESVKNGIF 299
>sp|Q9P2K3|RCOR3_HUMAN REST corepressor 3 OS=Homo sapiens GN=RCOR3 PE=1 SV=2
Length = 495
Score = 32.3 bits (72), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 55 NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDV 101
N I++ WT EEQ + G++KY D + IA + NKTV V
Sbjct: 283 NQKINARWTTEEQLLAVQGVRKYGKD-----FQAIADVIGNKTVGQV 324
>sp|B0G0Y5|MYBAA_DICDI Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1
Length = 971
Score = 32.3 bits (72), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 16/83 (19%)
Query: 46 ERWSAILKHNPGISSE-WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALR 104
ERWS L +P I + WTLEE I+ D KY + ++A+I+ L +T + A++
Sbjct: 797 ERWSNQL--DPSIKRDAWTLEEDRIILDAHSKYGN-----KWAEISKLLPGRT--NCAIK 847
Query: 105 CRWMTKKENSKRRKEELSRKSKD 127
W + K +LS+K D
Sbjct: 848 NHW------NSTMKRKLSKKQYD 864
>sp|P54103|DNJC2_MOUSE DnaJ homolog subfamily C member 2 OS=Mus musculus GN=Dnajc2 PE=1
SV=2
Length = 621
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 37 SNGNSITLAERWSAILKHNPGI-SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNN 95
S +S +ER+ P I S+ WT EEQ +LE L+ Y + T R+ KIA +
Sbjct: 533 SQADSAAPSERF-----EGPCIDSTPWTTEEQKLLEQALKTYPVN-TPERWEKIAEAVPG 586
Query: 96 KTVRDVALRCRWMTKKENSKRRKEE 120
+T +D R + + + +K+ +E
Sbjct: 587 RTKKDCMRRYKELVEMVKAKKAAQE 611
>sp|Q1RMH9|DNJC2_BOVIN DnaJ homolog subfamily C member 2 OS=Bos taurus GN=DNAJC2 PE=2 SV=1
Length = 621
Score = 31.2 bits (69), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 62 WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
WT EEQ +LE L+ Y + T R+ KIA + +T +D R + + + +K+ +E
Sbjct: 554 WTTEEQKLLEQALKTYPVN-TPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611
>sp|Q4R8H2|DNJC2_MACFA DnaJ homolog subfamily C member 2 OS=Macaca fascicularis GN=DNAJC2
PE=2 SV=1
Length = 621
Score = 31.2 bits (69), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 62 WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
WT EEQ +LE L+ Y + T R+ KIA + +T +D R + + + +K+ +E
Sbjct: 554 WTTEEQKLLEQALKTYPVN-TPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611
>sp|Q14NV1|FOLD_SPICI Bifunctional protein FolD OS=Spiroplasma citri GN=folD PE=3 SV=1
Length = 286
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 32/47 (68%), Gaps = 5/47 (10%)
Query: 206 TRDNILRILNEMNNTS---AIMRQMPPLPVHLN-EELSNTILPPPNI 248
T +++I+N++NN S AI+ Q+ PLP H+N E++ NTI+ ++
Sbjct: 76 TESALIKIINDLNNNSKIDAILVQL-PLPSHINSEKVINTIITKKDV 121
>sp|Q7TQ20|DNJC2_RAT DnaJ homolog subfamily C member 2 OS=Rattus norvegicus GN=Dnajc2
PE=2 SV=1
Length = 621
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 56 PGISS-EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALR 104
P I S WT EEQ +LE L+ Y + T R+ KIA + +T +D R
Sbjct: 547 PCIDSIPWTTEEQKLLEQALKTYPVN-TPERWEKIAEAVPGRTKKDCMRR 595
>sp|Q99543|DNJC2_HUMAN DnaJ homolog subfamily C member 2 OS=Homo sapiens GN=DNAJC2 PE=1
SV=4
Length = 621
Score = 31.2 bits (69), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 62 WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
WT EEQ +LE L+ Y + T R+ KIA + +T +D R + + + +K+ +E
Sbjct: 554 WTTEEQKLLEQALKTYPVN-TPERWEKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQE 611
>sp|Q54PP6|MYBY_DICDI Myb-like protein Y OS=Dictyostelium discoideum GN=mybY PE=4 SV=1
Length = 572
Score = 31.2 bits (69), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 62 WTLEEQAILEDGLQKYASDR--TLTRYAKIAVHLNNKTVRDVALRCRWM 108
WT+E+Q LED L KY R +++R+ ++ L + + VALR M
Sbjct: 312 WTVEDQKKLEDALTKYPPSRFSSVSRWQMVSKEL-GISPKAVALRYNQM 359
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,477,840
Number of Sequences: 539616
Number of extensions: 3870795
Number of successful extensions: 20014
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 17712
Number of HSP's gapped (non-prelim): 1858
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)