Query 025458
Match_columns 252
No_of_seqs 102 out of 111
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 10:45:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/025458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/025458hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eef_G F-HB80.4, designed hema 99.1 4.3E-12 1.5E-16 95.9 -0.6 48 58-106 19-66 (74)
2 1wgx_A KIAA1903 protein; MYB D 99.1 1E-10 3.4E-15 88.0 5.9 52 59-111 8-59 (73)
3 2cjj_A Radialis; plant develop 99.0 6.3E-10 2.1E-14 86.8 6.3 52 59-111 8-59 (93)
4 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.2E-09 4E-14 81.5 6.2 49 59-109 8-56 (72)
5 2cqr_A RSGI RUH-043, DNAJ homo 98.9 2.7E-09 9.1E-14 79.8 7.3 52 58-110 17-68 (73)
6 2yum_A ZZZ3 protein, zinc fing 98.8 7.1E-09 2.4E-13 76.2 6.3 53 59-111 8-61 (75)
7 2eqr_A N-COR1, N-COR, nuclear 98.7 3.4E-08 1.2E-12 70.7 6.0 44 58-106 11-54 (61)
8 2yqk_A Arginine-glutamic acid 98.3 7.3E-07 2.5E-11 64.3 5.8 47 59-111 9-56 (63)
9 2crg_A Metastasis associated p 98.3 7.6E-07 2.6E-11 65.6 5.6 44 58-106 7-51 (70)
10 2cu7_A KIAA1915 protein; nucle 98.3 5.5E-07 1.9E-11 65.9 4.8 48 59-111 9-56 (72)
11 2yus_A SWI/SNF-related matrix- 98.2 1.2E-06 4E-11 66.1 5.3 50 54-108 13-62 (79)
12 1x41_A Transcriptional adaptor 98.1 3.1E-06 1.1E-10 59.9 4.7 48 59-110 8-55 (60)
13 2elk_A SPCC24B10.08C protein; 98.0 1.2E-05 4.2E-10 56.6 5.6 46 59-108 9-55 (58)
14 2iw5_B Protein corest, REST co 97.9 1.8E-05 6E-10 70.9 6.5 49 58-111 132-180 (235)
15 2d9a_A B-MYB, MYB-related prot 97.9 1.7E-05 5.7E-10 55.8 5.1 49 59-111 8-56 (60)
16 1guu_A C-MYB, MYB proto-oncoge 97.9 1.7E-05 5.7E-10 54.1 4.8 45 60-108 4-48 (52)
17 2din_A Cell division cycle 5-l 97.8 1.3E-05 4.6E-10 57.3 3.9 47 59-111 9-55 (66)
18 4a69_C Nuclear receptor corepr 97.8 3.5E-05 1.2E-09 59.7 5.7 50 50-105 35-84 (94)
19 1w0t_A Telomeric repeat bindin 97.8 3.3E-05 1.1E-09 53.1 5.0 47 60-110 3-51 (53)
20 1gvd_A MYB proto-oncogene prot 97.8 2.9E-05 1E-09 53.0 4.5 44 60-107 4-47 (52)
21 2ltp_A Nuclear receptor corepr 96.9 4.4E-06 1.5E-10 63.8 0.0 47 60-111 17-63 (89)
22 1gv2_A C-MYB, MYB proto-oncoge 97.6 4.9E-05 1.7E-09 58.3 4.7 48 59-111 56-103 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 97.6 5.8E-05 2E-09 58.5 4.8 48 59-111 53-100 (107)
24 2dim_A Cell division cycle 5-l 97.6 6.6E-05 2.3E-09 54.3 4.7 48 60-111 10-57 (70)
25 1h8a_C AMV V-MYB, MYB transfor 97.5 7.6E-05 2.6E-09 59.4 4.6 48 59-111 79-126 (128)
26 3osg_A MYB21; transcription-DN 97.5 0.0001 3.4E-09 58.8 4.3 47 60-111 63-109 (126)
27 1ity_A TRF1; helix-turn-helix, 97.4 0.00014 4.7E-09 52.5 4.6 50 58-111 9-60 (69)
28 3sjm_A Telomeric repeat-bindin 97.4 0.00019 6.4E-09 51.8 5.3 46 59-108 11-58 (64)
29 2llk_A Cyclin-D-binding MYB-li 97.4 0.00022 7.7E-09 53.1 5.5 46 59-110 23-68 (73)
30 1gv2_A C-MYB, MYB proto-oncoge 97.4 0.00016 5.4E-09 55.4 4.4 46 60-109 5-50 (105)
31 2k9n_A MYB24; R2R3 domain, DNA 97.3 0.00024 8.2E-09 55.0 4.8 45 60-108 2-46 (107)
32 1h89_C C-MYB, MYB proto-oncoge 97.3 0.0002 7E-09 58.7 4.7 48 59-111 110-157 (159)
33 3osg_A MYB21; transcription-DN 97.2 0.00034 1.2E-08 55.7 4.8 46 59-109 11-56 (126)
34 1h8a_C AMV V-MYB, MYB transfor 97.2 0.00048 1.7E-08 54.7 5.3 48 59-110 27-74 (128)
35 3zqc_A MYB3; transcription-DNA 97.0 0.00062 2.1E-08 54.4 4.3 48 60-112 55-102 (131)
36 2xag_B REST corepressor 1; ami 96.9 0.0011 3.7E-08 64.6 6.6 47 58-109 379-425 (482)
37 1x58_A Hypothetical protein 49 96.8 0.002 6.7E-08 47.1 5.6 51 58-113 7-60 (62)
38 1ug2_A 2610100B20RIK gene prod 96.7 0.0073 2.5E-07 47.4 8.2 55 52-108 26-80 (95)
39 3zqc_A MYB3; transcription-DNA 96.7 0.00065 2.2E-08 54.3 2.1 46 60-109 3-48 (131)
40 2ckx_A NGTRF1, telomere bindin 96.6 0.0018 6.1E-08 49.2 4.3 47 61-111 2-52 (83)
41 1h89_C C-MYB, MYB proto-oncoge 96.6 0.0019 6.6E-08 52.8 4.6 49 59-111 58-106 (159)
42 2aje_A Telomere repeat-binding 96.2 0.0048 1.6E-07 48.9 4.6 52 56-111 10-65 (105)
43 2xag_B REST corepressor 1; ami 96.2 0.00083 2.8E-08 65.4 0.0 41 58-103 188-228 (482)
44 2roh_A RTBP1, telomere binding 95.5 0.011 3.8E-07 48.0 4.1 51 57-111 29-83 (122)
45 1ign_A Protein (RAP1); RAP1,ye 95.5 0.013 4.5E-07 52.8 4.9 53 60-112 9-62 (246)
46 2juh_A Telomere binding protei 95.2 0.033 1.1E-06 45.1 5.9 49 58-110 16-68 (121)
47 2lr8_A CAsp8-associated protei 93.8 0.0052 1.8E-07 45.9 0.0 54 52-108 7-60 (70)
48 3hm5_A DNA methyltransferase 1 93.5 0.12 4.1E-06 40.2 5.4 54 60-118 31-89 (93)
49 1ofc_X ISWI protein; nuclear p 91.7 0.13 4.3E-06 47.5 3.9 40 59-102 110-149 (304)
50 1irz_A ARR10-B; helix-turn-hel 88.8 0.89 3E-05 33.1 5.6 52 58-110 6-58 (64)
51 1fex_A TRF2-interacting telome 88.4 0.73 2.5E-05 32.5 4.8 49 59-109 2-55 (59)
52 4b4c_A Chromodomain-helicase-D 84.3 0.93 3.2E-05 38.0 4.2 43 59-103 7-51 (211)
53 4iej_A DNA methyltransferase 1 75.2 3.8 0.00013 31.9 4.6 47 60-111 31-82 (93)
54 2y9y_A Imitation switch protei 69.4 3.3 0.00011 39.2 3.6 40 59-102 123-163 (374)
55 2dmt_A Homeobox protein BARH-l 67.6 28 0.00095 24.8 7.6 50 57-111 19-68 (80)
56 1ofc_X ISWI protein; nuclear p 59.4 20 0.00069 32.8 6.8 54 56-109 209-273 (304)
57 2dmp_A Zinc fingers and homeob 52.1 46 0.0016 24.4 6.6 45 62-111 20-64 (89)
58 2da3_A Alpha-fetoprotein enhan 51.4 34 0.0012 24.0 5.6 49 58-111 20-68 (80)
59 1wh5_A ZF-HD homeobox family p 45.6 82 0.0028 22.6 7.5 50 58-111 20-72 (80)
60 2hi3_A Homeodomain-only protei 42.4 63 0.0021 22.5 5.8 50 58-111 5-54 (73)
61 2cuf_A FLJ21616 protein; homeo 39.8 52 0.0018 24.1 5.2 37 57-94 9-45 (95)
62 1uhs_A HOP, homeodomain only p 39.4 92 0.0031 21.5 6.4 49 59-111 5-53 (72)
63 2ecb_A Zinc fingers and homeob 38.8 72 0.0025 23.8 5.9 46 61-111 17-62 (89)
64 2h1k_A IPF-1, pancreatic and d 36.4 82 0.0028 21.2 5.4 48 59-111 7-54 (63)
65 2dmn_A Homeobox protein TGIF2L 36.2 77 0.0026 22.8 5.5 49 59-111 11-61 (83)
66 2hzd_A Transcriptional enhance 34.4 51 0.0017 24.9 4.4 52 59-111 6-74 (82)
67 3a02_A Homeobox protein arista 33.3 92 0.0032 20.6 5.2 49 58-111 2-50 (60)
68 1ezj_A Nucleocapsid phosphopro 33.2 48 0.0017 26.3 4.2 37 174-215 65-101 (115)
69 2ecc_A Homeobox and leucine zi 33.2 1.4E+02 0.0048 21.8 6.5 48 59-111 7-54 (76)
70 3o6q_A Stage II sporulation pr 33.0 32 0.0011 29.0 3.3 26 170-195 5-30 (157)
71 1wh7_A ZF-HD homeobox family p 32.2 1.4E+02 0.0048 21.5 7.5 49 58-111 20-72 (80)
72 2dmu_A Homeobox protein goosec 31.6 1.2E+02 0.004 20.8 5.7 49 58-111 10-58 (70)
73 2ebi_A DNA binding protein GT- 31.5 58 0.002 23.5 4.2 36 59-94 4-44 (86)
74 2da1_A Alpha-fetoprotein enhan 30.3 1.1E+02 0.0039 20.7 5.4 49 58-111 10-58 (70)
75 2da6_A Hepatocyte nuclear fact 30.3 80 0.0027 24.5 5.0 35 58-93 9-43 (102)
76 1x2m_A LAG1 longevity assuranc 29.6 62 0.0021 22.9 4.0 43 65-111 10-52 (64)
77 2ko4_A Mediator of RNA polymer 28.9 17 0.00059 27.6 0.9 25 212-236 11-38 (81)
78 3v2d_2 50S ribosomal protein L 27.7 1.7E+02 0.0059 21.1 6.3 42 177-219 25-66 (72)
79 2kxn_B Transformer-2 protein h 27.2 47 0.0016 25.3 3.2 26 50-78 46-71 (129)
80 2cra_A Homeobox protein HOX-B1 27.1 1.5E+02 0.0052 20.2 5.7 48 59-111 11-58 (70)
81 1ign_A Protein (RAP1); RAP1,ye 27.0 1.1E+02 0.0039 27.3 6.0 19 58-76 93-111 (246)
82 4hw8_A Bacterial extracellular 26.6 17 0.00059 31.9 0.7 42 62-103 48-99 (420)
83 2cpz_A CUG triplet repeat RNA- 25.3 1.1E+02 0.0037 22.0 4.8 25 52-79 27-51 (115)
84 2dms_A Homeobox protein OTX2; 25.3 1.7E+02 0.006 20.4 5.8 49 58-111 10-58 (80)
85 1x2n_A Homeobox protein pknox1 24.5 1.7E+02 0.0059 20.0 5.8 49 59-111 11-61 (73)
86 2e1o_A Homeobox protein PRH; D 24.4 1.7E+02 0.0059 19.9 5.9 48 59-111 11-58 (70)
87 1b72_B Protein (PBX1); homeodo 23.8 1.9E+02 0.0064 20.5 5.8 49 59-111 5-55 (87)
88 4b4c_A Chromodomain-helicase-D 23.5 45 0.0016 27.5 2.7 29 59-91 134-162 (211)
89 2dmq_A LIM/homeobox protein LH 23.0 1.9E+02 0.0066 20.0 5.9 49 58-111 10-58 (80)
90 1zq3_P PRD-4, homeotic bicoid 20.9 2E+02 0.0069 19.5 5.7 48 59-111 6-53 (68)
91 3fia_A Intersectin-1; EH 1 dom 20.8 86 0.003 24.7 3.7 21 60-80 23-45 (121)
92 2ly9_A Zinc fingers and homeob 20.5 2.1E+02 0.0073 19.5 6.1 49 58-111 9-57 (74)
93 2e5h_A Zinc finger CCHC-type a 20.3 80 0.0028 21.7 3.1 25 51-78 17-41 (94)
94 3a03_A T-cell leukemia homeobo 20.3 1.9E+02 0.0065 18.8 5.3 47 60-111 2-48 (56)
No 1
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=99.12 E-value=4.3e-12 Score=95.91 Aligned_cols=48 Identities=23% Similarity=0.331 Sum_probs=42.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR 106 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r 106 (252)
.+..||.||+++||.+|+.|+.+ .++||.|||+.+|+||+.||.-+++
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~-tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKD-TPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSS-CCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-CCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 35689999999999999999988 7999999999999999999987664
No 2
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.10 E-value=1e-10 Score=88.05 Aligned_cols=52 Identities=10% Similarity=0.182 Sum_probs=47.7
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||+++||++|+.|+.+ .+.||.+||+.+|+||+.||.-|+..+.+.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~-tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKH-KPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSS-SSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-CccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 3579999999999999999988 789999999999999999999999988543
No 3
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.98 E-value=6.3e-10 Score=86.77 Aligned_cols=52 Identities=23% Similarity=0.433 Sum_probs=47.2
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||+++|+++|++|+.+ ...||.+||+.||+||+.+|..|+.-+..+
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~-~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKD-TPDRWANVARAVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4689999999999999999988 679999999999999999999998877543
No 4
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.94 E-value=1.2e-09 Score=81.50 Aligned_cols=49 Identities=31% Similarity=0.535 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~ 109 (252)
...||.||+++||.+|++|+.+ ...||.+||+.| +||+.||.-|++-+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~-t~~RW~~IA~~l-gRt~~eV~~~y~~L~ 56 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGG-TPGRWEKIAHEL-GRSVTDVTTKAKQLK 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-CCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 4579999999999999999988 789999999998 899999998877664
No 5
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.92 E-value=2.7e-09 Score=79.83 Aligned_cols=52 Identities=27% Similarity=0.427 Sum_probs=46.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK 110 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~ 110 (252)
....||.||+++|+++|.+|+.+ ...||.+||+.||+||+.+|-.|+.-+..
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~-~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRG-SSDCWDKIARCVPSKSKEDCIARYKLLVS 68 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSS-SHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999987 78999999999999999999999876643
No 6
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=7.1e-09 Score=76.21 Aligned_cols=53 Identities=38% Similarity=0.488 Sum_probs=47.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||+.+|++++.+|..+. .+.+|.+||..||++|.++|..|++++..+
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 35899999999999999999763 578999999999999999999999877655
No 7
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=3.4e-08 Score=70.68 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR 106 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r 106 (252)
....||.||.++|+++|.+|+. +|.+||..||+||+.||..++-
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHH
Confidence 4578999999999999999975 4999999999999999876543
No 8
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.34 E-value=7.3e-07 Score=64.33 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV-HLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa-~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||.++||++|.+|..+ |.+||. +||+||+.||. +.=.+-||
T Consensus 9 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v-~fYY~wKk 56 (63)
T 2yqk_A 9 EKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELI-TFYYYWKK 56 (63)
T ss_dssp CCSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHH-HHHHHHHC
T ss_pred CCCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHH-HHHhcccC
Confidence 4689999999999999999998 999998 69999999995 33334444
No 9
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.32 E-value=7.6e-07 Score=65.63 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCccHHHHHHHHH
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV-HLNNKTVRDVALRCR 106 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa-~Lp~KTvrDVAlR~r 106 (252)
....||+||.++||++|.+|..+ |-+||. +||+|||.||..=+-
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYY 51 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHH
Confidence 35689999999999999999998 999999 699999999986554
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.32 E-value=5.5e-07 Score=65.88 Aligned_cols=48 Identities=35% Similarity=0.609 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.+++..|.. +|.+||..||++|..+|--|++.+.++
T Consensus 9 ~~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~ 56 (72)
T 2cu7_A 9 SVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN 56 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 358999999999999999987 799999999999999999988887655
No 11
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.25 E-value=1.2e-06 Score=66.10 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=42.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458 54 HNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108 (252)
Q Consensus 54 ~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm 108 (252)
........||.||..+|.+++.+|. .+|.+||..+|+||.++|..|..-+
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 3344567999999999999999998 4799999999999999998776554
No 12
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=98.10 E-value=3.1e-06 Score=59.92 Aligned_cols=48 Identities=15% Similarity=0.225 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK 110 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~ 110 (252)
...||.||..+|.+++.+|.. .+|.+||..||++|.+++.-|...+..
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 357999999999999999974 479999999999999999888776543
No 13
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.96 E-value=1.2e-05 Score=56.64 Aligned_cols=46 Identities=20% Similarity=0.289 Sum_probs=39.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CccHHHHHHHHHhh
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-NKTVRDVALRCRWM 108 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-~KTvrDVAlR~rwm 108 (252)
...||.||..+|.+++.+|. ..+|.+||..+| ++|.+++..|...+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G----~~~W~~IA~~~~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG----LGNWADIADYVGNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT----TTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC----cCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35799999999999999996 357999999999 99999997776543
No 14
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.89 E-value=1.8e-05 Score=70.90 Aligned_cols=49 Identities=27% Similarity=0.415 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
....||.||.++|+++|.+|..+ |.+||..|++||+.+|--.+.+..+|
T Consensus 132 ~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 132 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 45699999999999999999987 99999999999999997766655443
No 15
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.88 E-value=1.7e-05 Score=55.76 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.++..+|.. .+|.+||..||++|..++--|.+.+.+.
T Consensus 8 k~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p 56 (60)
T 2d9a_A 8 KVKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLSG 56 (60)
T ss_dssp CSCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred CCCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence 358999999999999999963 4799999999999999887776655443
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.87 E-value=1.7e-05 Score=54.15 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm 108 (252)
..||.||..+|.++..+|.. .+|.+||..||++|..++--|.+-+
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1guu_A 4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKV 48 (52)
T ss_dssp CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 57999999999999999975 3699999999999999887776544
No 17
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.82 E-value=1.3e-05 Score=57.33 Aligned_cols=47 Identities=19% Similarity=0.310 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.++...|.. +|.+||. +|++|.++|--|++.+.++
T Consensus 9 k~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~ 55 (66)
T 2din_A 9 KTEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDK 55 (66)
T ss_dssp CCCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence 358999999999999888864 7999999 9999999998887776655
No 18
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.77 E-value=3.5e-05 Score=59.66 Aligned_cols=50 Identities=20% Similarity=0.396 Sum_probs=41.6
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHH
Q 025458 50 AILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRC 105 (252)
Q Consensus 50 ~~lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~ 105 (252)
.-+|.. .....||.||..+|+++|..|+.+ |-+||..||+||+.|+..=+
T Consensus 35 ~~~~~r-~~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 35 KVYKDR-QVMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHHHHH-HHTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred HHHhcc-CCCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence 334433 235789999999999999999887 89999999999999998544
No 19
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.77 E-value=3.3e-05 Score=53.12 Aligned_cols=47 Identities=34% Similarity=0.538 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhhcc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWMTK 110 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm~~ 110 (252)
..||.||..+|.++..+|.. .+|.+||..+| ++|..++--|.+-+.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 47999999999999999963 47999999999 9998888777665544
No 20
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=97.76 E-value=2.9e-05 Score=53.03 Aligned_cols=44 Identities=32% Similarity=0.438 Sum_probs=37.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHh
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRW 107 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rw 107 (252)
..||.||..+|.+++.+|.. .+|.+||..||++|..++-.|...
T Consensus 4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHN 47 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHHH
Confidence 47999999999999999964 469999999999998877666543
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=96.91 E-value=4.4e-06 Score=63.78 Aligned_cols=47 Identities=26% Similarity=0.294 Sum_probs=40.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..||.||..+|.+++..|.. +|.+||..||++|.++|-.|...+.++
T Consensus 17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 47999999999999999964 599999999999999888777665544
No 22
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.64 E-value=4.9e-05 Score=58.31 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.+++..|.. +|.+||..||++|..+|.-|.+-+.++
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999974 699999999999988777766655443
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.61 E-value=5.8e-05 Score=58.53 Aligned_cols=48 Identities=21% Similarity=0.512 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.+++..|.. +|.+||..||++|-.+|.-|.+-+.++
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 368999999999999999985 699999999999988887776665544
No 24
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=6.6e-05 Score=54.25 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
-.||.||..+|.++..+|.. .+|.+||..||++|.+++-.|.+.+.+.
T Consensus 10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p 57 (70)
T 2dim_A 10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWLDP 57 (70)
T ss_dssp CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTSCS
T ss_pred CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHcCC
Confidence 48999999999999999973 4799999999999999987776665544
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.53 E-value=7.6e-05 Score=59.36 Aligned_cols=48 Identities=25% Similarity=0.378 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.+++..|.. +|.+||..||++|..+|.-|.+-+.+|
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999985 699999999999988887777665544
No 26
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.45 E-value=0.0001 Score=58.82 Aligned_cols=47 Identities=30% Similarity=0.460 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..||.||..+|.+++..|.. +|.+||..||++|-.+|--|.+.+.+|
T Consensus 63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999985 599999999999988776666555444
No 27
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.44 E-value=0.00014 Score=52.54 Aligned_cols=50 Identities=32% Similarity=0.476 Sum_probs=41.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm~~K 111 (252)
....||.||..+|.++..+|.. .+|.+||..|| ++|..++--|.+-+.+.
T Consensus 9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 4568999999999999999963 47999999999 99988877766655544
No 28
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.44 E-value=0.00019 Score=51.83 Aligned_cols=46 Identities=33% Similarity=0.523 Sum_probs=36.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhh
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWM 108 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm 108 (252)
...||.||..+|.++..+|.. ..|.+||..+| ++|..|+--|.+=|
T Consensus 11 k~~WT~eED~~L~~~V~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 11 KQKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHccCC----CchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 357999999999999999964 35999999977 88877754444434
No 29
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=97.41 E-value=0.00022 Score=53.08 Aligned_cols=46 Identities=30% Similarity=0.422 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK 110 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~ 110 (252)
...||.||..+|.++..+|... |.+||..| ++|..+|--|++.+.+
T Consensus 23 k~~wT~EED~~L~~l~~~~G~k-----W~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 23 VGKYTPEEIEKLKELRIKHGND-----WATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCSSCHHHHHHHHHHHHHHSSC-----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC-----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 3589999999999999999853 99999999 9998877777665543
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=97.37 E-value=0.00016 Score=55.43 Aligned_cols=46 Identities=28% Similarity=0.385 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~ 109 (252)
..||.||..+|.++..+|.. .+|.+||..||++|.+++.-|.+-+.
T Consensus 5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 47999999999999999975 36999999999999998876655443
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=97.31 E-value=0.00024 Score=55.00 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm 108 (252)
..||.||..+|.++..+|.. .+|.+||..||++|.+++.-|..-+
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHHH
Confidence 36999999999999999975 4699999999999999987665443
No 32
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=97.31 E-value=0.0002 Score=58.71 Aligned_cols=48 Identities=23% Similarity=0.376 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.+++..|.. +|.+||..||++|--+|--|.+-+.+|
T Consensus 110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~ 157 (159)
T 1h89_C 110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR 157 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999985 799999999999987777776665554
No 33
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=97.20 E-value=0.00034 Score=55.67 Aligned_cols=46 Identities=22% Similarity=0.317 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~ 109 (252)
...||.||..+|.++..+|.. +|.+||..||++|.+++.-|.+-..
T Consensus 11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 457999999999999999964 6999999999999998876665443
No 34
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=97.17 E-value=0.00048 Score=54.67 Aligned_cols=48 Identities=27% Similarity=0.429 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK 110 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~ 110 (252)
...||.||..+|.+++.+|... +|.+||..||++|..++--|..-+..
T Consensus 27 k~~Wt~eED~~L~~~v~~~g~~----~W~~Ia~~l~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 27 KGPWTKEEDQRVIEHVQKYGPK----RWSDIAKHLKGRIGKQCRERWHNHLN 74 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHTCSC----CHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence 3589999999999999999753 69999999999999987766554433
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.97 E-value=0.00062 Score=54.42 Aligned_cols=48 Identities=23% Similarity=0.284 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKE 112 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke 112 (252)
..||.||..+|.++...|.. +|.+||..||++|-.+|--|.+-+.++.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~~ 102 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISKR 102 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999985 5999999999999887766655555553
No 36
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.95 E-value=0.0011 Score=64.62 Aligned_cols=47 Identities=28% Similarity=0.395 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~ 109 (252)
+...||.||..+|.++|.+|..+ |.+||..+++||+..|---+.|+.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57899999999999999999987 999999999999999988766543
No 37
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=96.84 E-value=0.002 Score=47.09 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=43.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH---HcCCccHHHHHHHHHhhcccch
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV---HLNNKTVRDVALRCRWMTKKEN 113 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa---~Lp~KTvrDVAlR~rwm~~Ke~ 113 (252)
..-.||.||...|.++..+|.. .|.+|+. .++++|-=|+.=|+|-|.++++
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence 4568999999999999999964 5999994 6788998888888888887754
No 38
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.70 E-value=0.0073 Score=47.38 Aligned_cols=55 Identities=22% Similarity=0.247 Sum_probs=44.7
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458 52 LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108 (252)
Q Consensus 52 lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm 108 (252)
+++.......||.||.+++-....+-. ++..+|..||..|.||+.-+|--|.+-+
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G--~s~~tFa~iA~~L~Nks~nqV~~RFq~L 80 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQG--AQPHTFSVISQQLGNKTPVEVSHRFREL 80 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHTT--SCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhcC--CChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence 556666889999999998766655532 3567888999999999999999999875
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.66 E-value=0.00065 Score=54.29 Aligned_cols=46 Identities=13% Similarity=0.231 Sum_probs=39.1
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~ 109 (252)
-.||.||..+|.+++.+|... .|.+||..||++|.+++.-|++-+.
T Consensus 3 g~Wt~eED~~L~~~v~~~g~~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENGPQ----NWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHCSC----CGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCcC----CHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 369999999999999999643 6999999999999999877665443
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.64 E-value=0.0018 Score=49.20 Aligned_cols=47 Identities=11% Similarity=0.302 Sum_probs=38.6
Q ss_pred CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCccHHHHHHHHHhhccc
Q 025458 61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVH----LNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~----Lp~KTvrDVAlR~rwm~~K 111 (252)
.||.||..+|.++..+|.. -+|.+||.. |+++|-.|+--|.|=|.++
T Consensus 2 ~WT~eEd~~L~~gv~k~G~----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCS----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCC----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 6999999999999999965 479999997 9999977766665555544
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=96.60 E-value=0.0019 Score=52.84 Aligned_cols=49 Identities=27% Similarity=0.363 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...||.||..+|.++..+|.. .+|.+||..||++|..++..|.+-+...
T Consensus 58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p 106 (159)
T 1h89_C 58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNP 106 (159)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence 468999999999999999975 3699999999999998887766544433
No 42
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.21 E-value=0.0048 Score=48.92 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=40.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhccc
Q 025458 56 PGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 56 ~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~K 111 (252)
......||.||..+|.++..+|.. -+|.+|+..+ +++|-.|+--|.|=|.++
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGT----GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCS----SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 345678999999999999999965 4799999976 788866655555545544
No 43
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.17 E-value=0.00083 Score=65.44 Aligned_cols=41 Identities=20% Similarity=0.487 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHH
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVAL 103 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAl 103 (252)
....||.||.++|+++|..|..+ |.+|+..||+||+.||..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V~ 228 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLVK 228 (482)
T ss_dssp ----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHHH
Confidence 34589999999999999999998 799999999999999974
No 44
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=95.52 E-value=0.011 Score=48.01 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhccc
Q 025458 57 GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 57 ~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~K 111 (252)
.....||.||..+|.++..+|.. -+|.+||..+ +++|-.|+--|.|=|.++
T Consensus 29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 35679999999999999999965 4799999985 899876665555445543
No 45
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=95.50 E-value=0.013 Score=52.76 Aligned_cols=53 Identities=28% Similarity=0.315 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhcccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTKKE 112 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke 112 (252)
..||.||..+|-+...+|+... .-.-|.+||..||++|.+.|=-|.+..-++.
T Consensus 9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ 62 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 62 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence 4899999999999999997752 2333999999999999998877777655553
No 46
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=95.20 E-value=0.033 Score=45.14 Aligned_cols=49 Identities=12% Similarity=0.295 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhcc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTK 110 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~ 110 (252)
....||.||..+|.++..+|. .-+|.+||..+ +++|-.|+--|.|=|.+
T Consensus 16 ~r~~WT~EEd~~L~~gV~k~G----~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 16 IRRPFSVAEVEALVEAVEHLG----TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp SSCCCCHHHHHHHHHHHHHHG----GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHC----CCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 456899999999999999995 45899999995 89986666555554554
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=93.77 E-value=0.0052 Score=45.88 Aligned_cols=54 Identities=22% Similarity=0.302 Sum_probs=43.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458 52 LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108 (252)
Q Consensus 52 lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm 108 (252)
+++...+..-||.||.+++-....+-. ++...|..||..| +||.-+|--|.+.+
T Consensus 7 ~~~~ge~vvlWTReeDR~IL~~cq~~G--~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 7 IKKKGEIIILWTRNDDRVILLECQKRG--PSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 566677889999999998766554333 3558999999999 99999999999875
No 48
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=93.48 E-value=0.12 Score=40.19 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-----CCccHHHHHHHHHhhcccchhhhhh
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL-----NNKTVRDVALRCRWMTKKENSKRRK 118 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L-----p~KTvrDVAlR~rwm~~Ke~~kRRK 118 (252)
.+||.||-..|-+...+|+- ||+.||..+ +++||-||--|+--+.++-...|.+
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~ 89 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV 89 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred CCCCHHHHHHHHHHHHHhCC-----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 79999999999999999975 699999999 5899999988877766665444443
No 49
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.66 E-value=0.13 Score=47.52 Aligned_cols=40 Identities=25% Similarity=0.367 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHH
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVA 102 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVA 102 (252)
-.+||..|-..|..|+.+|..+ .|.+||+.+++||+-+|.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~----~~~~IA~ev~~Kt~eEV~ 149 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVI 149 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHH----HHHHHHHHhcCCCHHHHH
Confidence 4689999999999999999886 488999999999999994
No 50
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=88.78 E-value=0.89 Score=33.08 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTK 110 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~ 110 (252)
....||+|....|.+++..+..|. .+.+-.++ +..++.|...|+.+.+-+.-
T Consensus 6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~-M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDL-MNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH-HCCTTCCHHHHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH-cCCCCCCHHHHHHHHHHHHH
Confidence 357899999999999999998663 44454444 34689999999999987653
No 51
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=88.42 E-value=0.73 Score=32.49 Aligned_cols=49 Identities=10% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC----chhhHHHHHHH-HcCCccHHHHHHHHHhhc
Q 025458 59 SSEWTLEEQAILEDGLQKYASD----RTLTRYAKIAV-HLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e----~~v~Ry~KIAa-~Lp~KTvrDVAlR~rwm~ 109 (252)
-+.+|.||..+|-+-+..|... ....-|..+|. .+|+-|-. +.|.||..
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~Htwq--SwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQ--SLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSH--HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHH--HHHHHHHH
Confidence 3679999999999999999654 36678999999 79998876 67888865
No 52
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=84.27 E-value=0.93 Score=38.00 Aligned_cols=43 Identities=21% Similarity=0.244 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCccHHHHHH
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV--HLNNKTVRDVAL 103 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa--~Lp~KTvrDVAl 103 (252)
...||..|...|..++.+|.. .-.||-.|++ .|++||..||--
T Consensus 7 ~~~~t~~E~r~fira~~kfG~--~~~r~~~I~~da~L~~Ks~~~v~~ 51 (211)
T 4b4c_A 7 IKGFSDAEIRRFIKSYKKFGG--PLERLDAIARDAELVDKSETDLRR 51 (211)
T ss_dssp -CCSCHHHHHHHHHHHTTCSS--GGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCC--chhHHHHHHHHhccCCCCHHHHHH
Confidence 468999999999999999974 2358888885 599999998863
No 53
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=75.19 E-value=3.8 Score=31.85 Aligned_cols=47 Identities=23% Similarity=0.370 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-----CccHHHHHHHHHhhccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-----NKTVRDVALRCRWMTKK 111 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-----~KTvrDVAlR~rwm~~K 111 (252)
.+||.||-.-|=+...+|+ .||+-|+.... .+||-|+--|.--+.+|
T Consensus 31 ~~WT~eETd~LfdLc~~fd-----lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD-----LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT-----TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcC-----CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999997 47889998874 68999987776554443
No 54
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=69.44 E-value=3.3 Score=39.21 Aligned_cols=40 Identities=25% Similarity=0.292 Sum_probs=35.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CccHHHHH
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-NKTVRDVA 102 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-~KTvrDVA 102 (252)
-.+||.-|-..|-.|+.+|..+ -|.+||+.+. +||+-+|.
T Consensus 123 F~~WnrrDF~~FI~a~~kyGR~----d~~~IA~ev~~~Kt~eEV~ 163 (374)
T 2y9y_A 123 FTNWNKLEFRKFITVSGKYGRN----SIQAIARELAPGKTLEEVR 163 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHCTT----CHHHHHSSCCCSSSHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHh----HHHHHHHHHccCCCHHHHH
Confidence 3589999999999999999875 5789999998 99999998
No 55
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.62 E-value=28 Score=24.81 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 57 GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 57 ~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
...+.+|.+...+||..... ...++...-..||..|. -|.+.|-+ |+.++
T Consensus 19 r~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-L~~~qV~v---WFqNR 68 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKRFEK-QKYLSTPDRIDLAESLG-LSQLQVKT---WYQNR 68 (80)
T ss_dssp CSCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhC-CCHHHeee---ccHHH
Confidence 35678999999999998876 33456666678888875 77777754 77655
No 56
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=59.44 E-value=20 Score=32.84 Aligned_cols=54 Identities=19% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHH----------HHcCCccHHHHHHHHHhhc
Q 025458 56 PGISSEWTLEEQAILEDGLQKYASDR-TLTRYAKIA----------VHLNNKTVRDVALRCRWMT 109 (252)
Q Consensus 56 ~~~~~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIA----------a~Lp~KTvrDVAlR~rwm~ 109 (252)
+...-.||.||.+.|--+|.+|.-+. ....-|+.+ --+-.+|+-+|+-||.-+-
T Consensus 209 ~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi 273 (304)
T 1ofc_X 209 NNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLI 273 (304)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHH
Confidence 34556899999999999999998752 444444422 2466799999999999975
No 57
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.14 E-value=46 Score=24.40 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 62 WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 62 WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.|.+...+||....+ ...+....-..||..|. -|.+.|-+ |+.++
T Consensus 20 ~t~~Ql~~Le~~F~~-~~yp~~~~r~~La~~~~-l~~~qV~v---WFqNR 64 (89)
T 2dmp_A 20 KTQGQVKILEDSFLK-SSFPTQAELDRLRVETK-LSRREIDS---WFSER 64 (89)
T ss_dssp CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCHHHHHHHHHHHcc-CCCCCHHHHHHHHHHhC-CCHHhccH---hhHhH
Confidence 699999999999865 34455666677888875 67777753 88765
No 58
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=51.41 E-value=34 Score=24.00 Aligned_cols=49 Identities=22% Similarity=0.233 Sum_probs=34.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+.+|.+...+||.....- ..++...-..||..|. -|.+.|-+ |+.++
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 68 (80)
T 2da3_A 20 LRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEVG-LKKRVVQV---WFQNT 68 (80)
T ss_dssp CCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHC-cCHHHhHH---HhHHH
Confidence 45778999999999887543 3455666678888874 67777644 77655
No 59
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=45.60 E-value=82 Score=22.63 Aligned_cols=50 Identities=6% Similarity=0.133 Sum_probs=36.3
Q ss_pred CCCCCCHHHHHHHHHHHhhh---cCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKY---ASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y---~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..+..|.+...+||....+. ...+....-..||..| +-+.+.|-+ |+.++
T Consensus 20 ~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~l-gL~~~~Vkv---WFqNr 72 (80)
T 1wh5_A 20 HRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQET-GVPRQVLKV---WLHNN 72 (80)
T ss_dssp CSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHS-CCCHHHHHH---HHHHH
T ss_pred CCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHh-CCCcccccC---Ccccc
Confidence 45789999999999987762 3345556667889988 477777655 87654
No 60
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=42.36 E-value=63 Score=22.47 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=38.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..+.+|.+...+||....+....++...-..||..|. -|.+.|-. |+.++
T Consensus 5 ~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~-l~~~qV~~---WFqNR 54 (73)
T 2hi3_A 5 TVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 54 (73)
T ss_dssp CCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 3467899999999999877666666666678888875 77777763 87765
No 61
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=39.76 E-value=52 Score=24.13 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=28.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC
Q 025458 57 GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN 94 (252)
Q Consensus 57 ~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp 94 (252)
..-+.||.++..+||..... ...++...-..||..|.
T Consensus 9 r~R~~ft~~ql~~Le~~F~~-~~yP~~~~r~~lA~~l~ 45 (95)
T 2cuf_A 9 GSRFTWRKECLAVMESYFNE-NQYPDEAKREEIANACN 45 (95)
T ss_dssp CCSCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHC
Confidence 34678999999999999877 45566666778888765
No 62
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=39.40 E-value=92 Score=21.46 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.+..|.+...+||....+....++...-..||..|. -|.+.|-. |+.++
T Consensus 5 Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 53 (72)
T 1uhs_A 5 AATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAG-LTEEQTQK---WFKQR 53 (72)
T ss_dssp CCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHC-cCHHHhhH---HhHHH
Confidence 467899999999999876566666666778898875 77777754 87765
No 63
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=38.77 E-value=72 Score=23.82 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..|.+...+||..... ...+...+-..||+.|. -|-+.|-+ |+.++
T Consensus 17 ~~t~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~lg-Lte~qVkv---WFqNR 62 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLN-SSVLTDEELNRLRAQTK-LTRREIDA---WFTEK 62 (89)
T ss_dssp CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTC-CCHHHHHH---HHHHH
T ss_pred cCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHhC-cChHHCee---ccccc
Confidence 6799999999998854 44567777788999976 88888876 88766
No 64
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=36.41 E-value=82 Score=21.16 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
-+..|.+...+||..... ...++...-..||..|. -|.+.|- .|+.++
T Consensus 7 Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~---~WFqNr 54 (63)
T 2h1k_A 7 RTAYTRAQLLELEKEFLF-NKYISRPRRVELAVMLN-LTERHIK---IWFQNR 54 (63)
T ss_dssp CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-CCHHHHH---HHHHHH
T ss_pred CCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhC-cCHHHhh---HHHHhh
Confidence 467899999999998854 34456666678888875 7777775 377655
No 65
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=36.22 E-value=77 Score=22.79 Aligned_cols=49 Identities=14% Similarity=0.184 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHHhhh--cCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKY--ASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y--~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.+..|.+...+||+.+..+ ...++...-..||..+. -|.+.|-. |+.++
T Consensus 11 R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~g-Ls~~qV~~---WFqNr 61 (83)
T 2dmn_A 11 KGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTN-LSLLQISN---WFINA 61 (83)
T ss_dssp CSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC-cCHHHhhH---Hhhhh
Confidence 4668999999999999876 33455666667888874 88888875 88765
No 66
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=34.42 E-value=51 Score=24.92 Aligned_cols=52 Identities=15% Similarity=0.390 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCc-----------------hhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDR-----------------TLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~-----------------~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..-|+++=-..|.++|+.|+... -|.+|+++... .-.|-..|+-|++-+.+.
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHH
Confidence 45799998899999999999641 35678887654 567888888888877654
No 67
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=33.34 E-value=92 Score=20.61 Aligned_cols=49 Identities=12% Similarity=0.215 Sum_probs=34.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+.+|.+...+||..... ...++...-..||..|. -|.+.|- .|+.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 50 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSR-THYPDVFTREELAMKIG-LTEARIQ---VWFQNR 50 (60)
T ss_dssp ---CCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-SCHHHHH---HHHHHH
T ss_pred CCcccCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHC-cCHHHHH---HHhhhh
Confidence 3467899999999999865 33456666678888874 7777776 377655
No 68
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=33.21 E-value=48 Score=26.32 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHH
Q 025458 174 GDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILN 215 (252)
Q Consensus 174 ~~LLEqNaqlLnQI~aNL~t~k~qeNidLf~r~RdNI~~IL~ 215 (252)
..-.|+|-++|.||-.-+.+++ |+..|+-+|-..-+.
T Consensus 65 ~~kv~en~~~L~QIQ~ei~s~r-----d~hkR~~E~QkEQ~S 101 (115)
T 1ezj_A 65 ARKVDENKQLLKQIQESVESFR-----DIYKRFSEYQKEQNS 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHhHHHHHH
Confidence 4567899999999999999997 888888888665443
No 69
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.16 E-value=1.4e+02 Score=21.77 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
....|.+-..+||..... ...++...+..||..+. -|.+.|-. |+.++
T Consensus 7 r~kfT~~Ql~~Le~~F~~-~~YPs~~er~~LA~~tg-Lte~qIkv---WFqNr 54 (76)
T 2ecc_A 7 GKRKTKEQLAILKSFFLQ-CQWARREDYQKLEQITG-LPRPEIIQ---WFGDT 54 (76)
T ss_dssp CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTC-CCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHHC-cCHHHhhH---HhHhh
Confidence 456899999999999874 45678888889999976 88888865 88765
No 70
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin - antitoxin toxin-antitoxin complex; HET: MSE; 2.50A {Bacillus subtilis}
Probab=32.96 E-value=32 Score=28.96 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=21.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhhc
Q 025458 170 GGNIGDTLEKNARALNQISANLAAFQ 195 (252)
Q Consensus 170 ~~~~~~LLEqNaqlLnQI~aNL~t~k 195 (252)
-.-|.+|||+|.++|.--..-+.+||
T Consensus 5 e~dT~~lle~Nn~ll~s~~~klKt~~ 30 (157)
T 3o6q_A 5 ETDTREILEENNEMLHMYLNRLKTYQ 30 (157)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34689999999999988877788776
No 71
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=32.18 E-value=1.4e+02 Score=21.47 Aligned_cols=49 Identities=8% Similarity=0.212 Sum_probs=33.8
Q ss_pred CCCCCCHHHHHHHHHHHhhh----cCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKY----ASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y----~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+..|.+...+|| .+..- ...+....-..||..|. -+.+.|-+ |+.++
T Consensus 20 ~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lg-L~e~qVkv---WFqNr 72 (80)
T 1wh7_A 20 FRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETG-VRRQVLKI---WMHNN 72 (80)
T ss_dssp CCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSC-CCHHHHHH---HHHTT
T ss_pred CCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhC-cCcCcccc---ccccc
Confidence 35779999999999 66651 23345566678898874 66666654 88655
No 72
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.63 E-value=1.2e+02 Score=20.76 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+.+|.+...+||..... ...++...-..||..|. -|.+.|-. |+.++
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 58 (70)
T 2dmu_A 10 HRTIFTDEQLEALENLFQE-TKYPDVGTREQLARKVH-LREEKVEV---WFKNR 58 (70)
T ss_dssp CCCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHC-CCHHHeeh---ccccc
Confidence 3577999999999999866 34456666678888875 77777764 87655
No 73
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=31.50 E-value=58 Score=23.46 Aligned_cols=36 Identities=11% Similarity=0.132 Sum_probs=25.0
Q ss_pred CCCCCHHHHHHHHHHHhhhcCC-----chhhHHHHHHHHcC
Q 025458 59 SSEWTLEEQAILEDGLQKYASD-----RTLTRYAKIAVHLN 94 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e-----~~v~Ry~KIAa~Lp 94 (252)
...||.+|-.+|-++....... ..-..|..||..|-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~ 44 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMR 44 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHH
Confidence 4689999999998887643322 23446777777654
No 74
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=30.29 E-value=1.1e+02 Score=20.72 Aligned_cols=49 Identities=8% Similarity=0.125 Sum_probs=34.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+..|.+...+||..... ...++...-..||..|. -|.+.|-. |+.++
T Consensus 10 ~Rt~ft~~q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNr 58 (70)
T 2da1_A 10 PRTRITDDQLRVLRQYFDI-NNSPSEEQIKEMADKSG-LPQKVIKH---WFRNT 58 (70)
T ss_dssp CSCCCCHHHHHHHHHHHHH-CSSCCTTHHHHHHHHHC-CCHHHHHH---HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH-CCCCCHHHHHHHHHHhC-CCHHHHHH---Hhhhh
Confidence 3577999999999998854 23345555567888875 77777754 87755
No 75
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.26 E-value=80 Score=24.45 Aligned_cols=35 Identities=11% Similarity=0.153 Sum_probs=28.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL 93 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L 93 (252)
.-+.||.+.+.+||....+=. .++..+-..||..|
T Consensus 9 ~Rt~ft~~ql~~Le~~F~~~~-yPs~~~Re~LA~~l 43 (102)
T 2da6_A 9 NRFKWGPASQQILYQAYDRQK-NPSKEEREALVEEC 43 (102)
T ss_dssp CCCCCCHHHHHHHHHHHTTCS-SCCHHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHHcCCC-CCCHHHHHHHHHHH
Confidence 467899999999999976533 56777777899888
No 76
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=29.62 E-value=62 Score=22.90 Aligned_cols=43 Identities=21% Similarity=0.391 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 65 EEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 65 eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
+...+||.....+...++..+-..||..|. -|.|.|-+ |+.++
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~-LterQVkv---WFqNR 52 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLD-WDVRSIQR---WFRQR 52 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHC-SCHHHHHH---HHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhC-CCHHHHHH---HHHHH
Confidence 347889999866666666676777999987 99999976 88765
No 77
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=28.90 E-value=17 Score=27.60 Aligned_cols=25 Identities=20% Similarity=0.655 Sum_probs=19.7
Q ss_pred HHHHHHhhh---HHhhccCCCCccccch
Q 025458 212 RILNEMNNT---SAIMRQMPPLPVHLNE 236 (252)
Q Consensus 212 ~IL~~M~~m---pgiM~qMPPLPVklNe 236 (252)
-++++|+.. +.+.++||.||.-||.
T Consensus 11 ql~n~mrn~PIP~~LL~kIPnLPpgVnT 38 (81)
T 2ko4_A 11 QLVNQMKVAPIPKQLLQRIPNIPPNINT 38 (81)
T ss_dssp HHHGGGGSCBCCHHHHTTSSSCCTTTCB
T ss_pred HHHHHHhcCCCCHHHHhhCCCCCCCcch
Confidence 356777755 4789999999998884
No 78
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=27.69 E-value=1.7e+02 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHhh
Q 025458 177 LEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNN 219 (252)
Q Consensus 177 LEqNaqlLnQI~aNL~t~k~qeNidLf~r~RdNI~~IL~~M~~ 219 (252)
|.+=-.-|-+++-..++.|+ +|+..|..+|.+|-.|+.-+++
T Consensus 25 L~elk~ELf~LR~q~atgql-~n~~~ir~vRr~IARi~Tvl~e 66 (72)
T 3v2d_2 25 VREKKRELMELRFQASIGQL-SQNHKIRDLKRQIARLLTVLNE 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-CCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 33333445567777788888 8999999999999998877664
No 79
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=27.25 E-value=47 Score=25.27 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=18.9
Q ss_pred cccccCCCCCCCCCHHHHHHHHHHHhhhc
Q 025458 50 AILKHNPGISSEWTLEEQAILEDGLQKYA 78 (252)
Q Consensus 50 ~~lk~~~~~~~~WT~eEq~iLe~~L~~y~ 78 (252)
..--+..+++.++|.+| |++.+.+|.
T Consensus 46 ~~~l~V~nLp~~~te~~---L~~~F~~~G 71 (129)
T 2kxn_B 46 NCCLGVFGLSLYTTERD---LREVFSKYG 71 (129)
T ss_dssp SSCBCEETCTTSCCHHH---HHHHHTTTS
T ss_pred CCEEEEeCCCCCCCHHH---HHHHHHhcC
Confidence 34556778888888887 667777774
No 80
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.05 E-value=1.5e+02 Score=20.19 Aligned_cols=48 Identities=15% Similarity=0.228 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
-+..|.+...+||..... ...++...-..||..|. -|.+.|-. |+.++
T Consensus 11 Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 58 (70)
T 2cra_A 11 RIPYSKGQLRELEREYAA-NKFITKDKRRKISAATS-LSERQITI---WFQNR 58 (70)
T ss_dssp CCCSCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTC-CCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHC-CCHHHhhH---hhHhH
Confidence 577999999999998865 33456666678898875 77777754 77655
No 81
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=26.99 E-value=1.1e+02 Score=27.31 Aligned_cols=19 Identities=21% Similarity=0.363 Sum_probs=16.7
Q ss_pred CCCCCCHHHHHHHHHHHhh
Q 025458 58 ISSEWTLEEQAILEDGLQK 76 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~ 76 (252)
+-..||.||...|-....+
T Consensus 93 iK~rftaeeDy~L~~~i~~ 111 (246)
T 1ign_A 93 IKRKFSADEDYTLAIAVKK 111 (246)
T ss_dssp SCCCCCHHHHHHHHHHHHH
T ss_pred ccCccchhccHHHHHHHHH
Confidence 5678999999999998877
No 82
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A*
Probab=26.64 E-value=17 Score=31.93 Aligned_cols=42 Identities=10% Similarity=0.064 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHHHhhhcCC----------chhhHHHHHHHHcCCccHHHHHH
Q 025458 62 WTLEEQAILEDGLQKYASD----------RTLTRYAKIAVHLNNKTVRDVAL 103 (252)
Q Consensus 62 WT~eEq~iLe~~L~~y~~e----------~~v~Ry~KIAa~Lp~KTvrDVAl 103 (252)
|+..+...+++.+..|-.+ +.-.-+.||.+.+-..+.=||..
T Consensus 48 ~~~~~~~~~~~~~~~f~~~~gi~V~~~~~~~~~~~~kl~~~~~sg~~pDv~~ 99 (420)
T 4hw8_A 48 DGDKQMAFYKKITDQYTKKTGIKVKLVNIGQNDQLENISLDAPAGKGPDIFF 99 (420)
T ss_dssp SSHHHHHHHHHHHHHHHHHHCCEEEEEECCTTTHHHHHHHHGGGTCSCSEEE
T ss_pred CCCcchHHHHHHHHHHHHHhCCEEEEEecCchhHHHHHHHHHhcCCCCCEEE
Confidence 4788888899988888654 12244778888875555556654
No 83
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=25.31 E-value=1.1e+02 Score=22.04 Aligned_cols=25 Identities=8% Similarity=0.041 Sum_probs=17.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHhhhcC
Q 025458 52 LKHNPGISSEWTLEEQAILEDGLQKYAS 79 (252)
Q Consensus 52 lk~~~~~~~~WT~eEq~iLe~~L~~y~~ 79 (252)
--|..++..++|.+| |.+.+.+|..
T Consensus 27 ~l~V~nLp~~~t~~~---l~~~F~~~G~ 51 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQD---LLQMFMPFGN 51 (115)
T ss_dssp CEEEESCCSSCCHHH---HHHHHGGGSC
T ss_pred EEEEeCCCCCCCHHH---HHHHHHhcCC
Confidence 446778888999877 5566777743
No 84
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=25.26 E-value=1.7e+02 Score=20.41 Aligned_cols=49 Identities=16% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+.+|.+...+||..... ...++...-..||..|. -|.+.|- .|+.++
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~---~WFqNR 58 (80)
T 2dms_A 10 ERTTFTRAQLDVLEALFAK-TRYPDIFMREEVALKIN-LPESRVQ---VWFKNR 58 (80)
T ss_dssp CCSSCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTT-CCHHHHH---HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHC-cCHHHhh---hhhHHH
Confidence 4578999999999998865 33456666778888875 7777774 377655
No 85
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.52 E-value=1.7e+02 Score=19.99 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=34.8
Q ss_pred CCCCCHHHHHHHHHHHhhh--cCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKY--ASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y--~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.+..|.+...+||..+... ...++...-..||..+. -|.+.|-. |+.++
T Consensus 11 R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~-L~~~qV~~---WFqNr 61 (73)
T 1x2n_A 11 RGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN-LTLLQVNN---WFINA 61 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHC-cCHHHHHH---HhHHH
Confidence 4678999999999999652 33445555567787764 77887764 77655
No 86
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=24.42 E-value=1.7e+02 Score=19.90 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.+.+|.+...+||..... ...++...-..||..|. -|.+.|-. |+.++
T Consensus 11 R~~ft~~q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~~---WFqNr 58 (70)
T 2e1o_A 11 QVRFSNDQTIELEKKFET-QKYLSPPERKRLAKMLQ-LSERQVKT---WFQNR 58 (70)
T ss_dssp CCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHTT-CCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHC-CCHHHhhH---hhHhh
Confidence 467999999999999865 33456666678888875 77777753 77655
No 87
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=23.77 E-value=1.9e+02 Score=20.46 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHh--hhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQ--KYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~--~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.+.+|.+...+||..+. .....++...-..||..|. -|.+.|-. |+.++
T Consensus 5 R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~-l~~~qV~~---WFqNr 55 (87)
T 1b72_B 5 RRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCG-ITVSQVSN---WFGNK 55 (87)
T ss_dssp CCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHT-SCHHHHHH---HHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHC-cCHHHHHH---HHHHH
Confidence 35688999999999984 2233345555567888874 77777764 77655
No 88
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=23.54 E-value=45 Score=27.52 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV 91 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa 91 (252)
+..||.+|...|--|+.+|.= -+|-.|-+
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~----g~w~~Ir~ 162 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGY----GSWEMIKM 162 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCT----TCHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCc----CcHHHHHh
Confidence 457999999999999999963 45777765
No 89
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.04 E-value=1.9e+02 Score=20.04 Aligned_cols=49 Identities=8% Similarity=0.168 Sum_probs=36.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
.-+..|.+...+||.....- ..++...-..||..|. -|.+.|- .|+.++
T Consensus 10 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 58 (80)
T 2dmq_A 10 MRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKTG-LTKRVLQ---VWFQNA 58 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHTC-CCHHHHH---HHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhC-CCHHHhh---HccHHH
Confidence 35779999999999988643 3456666678888875 7777775 388765
No 90
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=20.93 E-value=2e+02 Score=19.46 Aligned_cols=48 Identities=21% Similarity=0.304 Sum_probs=35.1
Q ss_pred CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
-+.+|.+...+||..... ...++...-..||..|. -|.+.|- .|+.++
T Consensus 6 Rt~ft~~Q~~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~---~WFqNR 53 (68)
T 1zq3_P 6 RTTFTSSQIAELEQHFLQ-GRYLTAPRLADLSAKLA-LGTAQVK---IWFKNR 53 (68)
T ss_dssp SCCCCHHHHHHHHHHHTT-CSSCCHHHHHHHHHHHT-SCHHHHH---HHHHHH
T ss_pred CCCcCHHHHHHHHHHHhc-CCCcCHHHHHHHHHHhC-cCHHHhh---HhhHHH
Confidence 467899999999998765 33456666678888875 7777775 387655
No 91
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=20.85 E-value=86 Score=24.68 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=17.5
Q ss_pred CCC--CHHHHHHHHHHHhhhcCC
Q 025458 60 SEW--TLEEQAILEDGLQKYASD 80 (252)
Q Consensus 60 ~~W--T~eEq~iLe~~L~~y~~e 80 (252)
.+| |.||.+.+++....|+..
T Consensus 23 ~~W~it~ee~~~y~~iF~~lD~~ 45 (121)
T 3fia_A 23 DTWAITVEERAKHDQQFHSLKPI 45 (121)
T ss_dssp TTSCCCHHHHHHHHHHHHHTCCB
T ss_pred CCCCCCHHHHHHHHHHHHHhCCC
Confidence 355 679999999999999864
No 92
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.48 E-value=2.1e+02 Score=19.52 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=36.4
Q ss_pred CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
..+..|.+...+||....+ ...++......||..|. -+.+.|- .|+.++
T Consensus 9 ~Rt~ft~~Ql~~Le~~F~~-~~yp~~~~r~~La~~l~-l~~~qV~---~WFqNr 57 (74)
T 2ly9_A 9 IRAKKTKEQLAELKVSYLK-NQFPHDSEIIRLMKITG-LTKGEIK---KWFSDT 57 (74)
T ss_dssp TTCCCCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHC-CCHHHHH---HHHHHH
T ss_pred CCcCCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHhC-cCHHHee---eCChhH
Confidence 4678999999999999874 33456666678888874 7777774 477655
No 93
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=80 Score=21.69 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=17.9
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHhhhc
Q 025458 51 ILKHNPGISSEWTLEEQAILEDGLQKYA 78 (252)
Q Consensus 51 ~lk~~~~~~~~WT~eEq~iLe~~L~~y~ 78 (252)
.--+..+++.++|.+| |.+.+.+|.
T Consensus 17 ~~l~V~nlp~~~t~~~---l~~~f~~~G 41 (94)
T 2e5h_A 17 STVYVSNLPFSLTNND---LYRIFSKYG 41 (94)
T ss_dssp TSEEEESCCTTSCHHH---HHHHTTTTS
T ss_pred CEEEEECCCCCCCHHH---HHHHHHhcC
Confidence 3456678888899888 566677774
No 94
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=20.25 E-value=1.9e+02 Score=18.84 Aligned_cols=47 Identities=17% Similarity=0.226 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458 60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111 (252)
Q Consensus 60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K 111 (252)
+.+|.+...+||..... ...++...-..||..|. -|.+.|-. |+.++
T Consensus 2 T~ft~~Ql~~Le~~F~~-~~yp~~~~r~~LA~~l~-l~~~qV~~---WFqNR 48 (56)
T 3a03_A 2 TSFSRSQVLELERRFLR-QKYLASAERAALAKALR-MTDAQVKT---WFQNR 48 (56)
T ss_dssp --CCHHHHHHHHHHHHH-CSSCCHHHHHHHHHHHT-CCHHHHHH---HHHHH
T ss_pred CccCHHHHHHHHHHHHh-cCCcCHHHHHHHHHHhC-cCHHHhhH---hhHHh
Confidence 45788999999998854 33455555667888875 77777753 77655
Done!